Query 021528
Match_columns 311
No_of_seqs 163 out of 701
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 7.2E-44 2.5E-48 327.4 39.7 270 28-310 10-293 (295)
2 3emn_X Voltage-dependent anion 99.6 5.6E-12 1.9E-16 115.4 29.6 164 95-259 123-292 (295)
3 3pgu_A Long-chain fatty acid t 95.5 0.79 2.7E-05 43.4 17.8 96 164-261 268-378 (427)
4 3dwo_X Probable outer membrane 92.6 7.2 0.00024 37.0 23.4 99 160-261 277-390 (451)
5 3bry_A TBUX; beta barrel, oute 91.7 8.5 0.00029 36.0 20.4 97 163-261 273-389 (441)
6 3bs0_A TODX; beta barrel, oute 90.6 11 0.00038 35.2 19.6 95 165-261 275-387 (439)
7 3dwo_X Probable outer membrane 89.0 16 0.00053 34.6 25.6 57 213-269 278-357 (451)
8 3pgu_A Long-chain fatty acid t 88.7 16 0.00054 34.3 20.0 29 216-244 268-296 (427)
9 3bry_A TBUX; beta barrel, oute 83.7 28 0.00096 32.4 23.1 53 217-269 275-356 (441)
10 1i78_A Protease VII; integral 83.1 25 0.00086 31.4 17.9 180 110-297 41-255 (297)
11 2x55_A Coagulase/fibrinolysin; 75.3 44 0.0015 29.7 20.9 180 110-297 42-249 (293)
12 3vy8_X Outer membrane protein; 71.4 32 0.0011 31.4 10.9 64 197-260 271-355 (355)
13 3bs0_A TODX; beta barrel, oute 68.2 76 0.0026 29.4 18.5 50 220-269 278-354 (439)
14 2por_A Porin; HET: C8E; 1.80A 59.1 93 0.0032 27.3 18.4 63 198-260 230-301 (301)
15 2x55_A Coagulase/fibrinolysin; 50.9 1.3E+02 0.0045 26.6 20.1 85 220-309 111-195 (293)
16 3a2s_X Outer membrane protein 49.2 1.3E+02 0.0046 26.8 10.8 39 222-260 311-355 (355)
17 3aeh_A Hemoglobin-binding prot 47.8 90 0.0031 27.3 9.2 42 220-261 263-307 (308)
18 4aui_A Porin (PORB); membrane 43.4 1.4E+02 0.0047 26.2 9.8 63 198-260 245-327 (327)
19 2vdf_A OPCA, outer membrane pr 41.6 57 0.002 28.0 6.3 21 291-311 178-198 (253)
20 1i78_A Protease VII; integral 35.5 2.3E+02 0.008 25.0 16.0 85 220-309 111-199 (297)
21 3qq2_A BRKA autotransporter; b 32.1 95 0.0032 26.7 6.6 15 151-165 130-144 (284)
22 2lme_A Adhesin YADA; trimeric 31.3 1.3E+02 0.0046 22.1 6.4 38 221-259 67-104 (105)
23 2wjr_A Probable N-acetylneuram 30.9 2.4E+02 0.0081 23.6 9.0 30 218-247 51-80 (214)
24 1qjp_A Outer membrane protein 28.4 1.4E+02 0.0049 22.9 6.6 24 222-245 122-145 (171)
25 1p4t_A Outer membrane protein 27.6 1.8E+02 0.0062 22.1 7.0 22 223-244 110-131 (155)
26 3slt_A Serine protease ESPP; b 25.3 1.5E+02 0.0052 26.1 6.8 23 223-245 273-295 (313)
27 1qd5_A Outer membrane phosphol 25.1 3.5E+02 0.012 23.7 9.2 70 222-310 202-271 (275)
28 3qq2_A BRKA autotransporter; b 24.0 3.3E+02 0.011 23.1 9.6 36 171-206 244-282 (284)
29 1qd6_C Protein (outer membrane 23.4 3.5E+02 0.012 23.1 10.1 16 295-310 221-236 (240)
30 2x27_X Outer membrane protein 20.6 3.5E+02 0.012 22.1 14.8 29 112-140 41-69 (212)
31 3qra_A AIL, attachment invasio 20.1 3.1E+02 0.011 21.3 12.9 39 222-260 117-157 (157)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=7.2e-44 Score=327.42 Aligned_cols=270 Identities=16% Similarity=0.228 Sum_probs=230.0
Q ss_pred cCCCCCCCcHHHhHHHHhhccC-ccccceEEEEEeccCCCCeEEEEEEEeCCccCCCCCccccccCCcceEEEEEEeCCc
Q 021528 28 YMNLPCPIPYEEIHREALMSLK-PELFEGLRFDFTKGLNQKFSLSHSVIMGPTEIPSQSTETIKIPTAHYEFGANYIDPK 106 (311)
Q Consensus 28 ~~~l~~Pg~f~dl~ke~~~~l~-~~~f~G~kl~~~k~~s~~f~~sh~~~lg~~~~p~~~~~~~K~~~~~y~f~~~y~~~~ 106 (311)
...+.+||.|.||+|.|||+|. +|+|+..||++++..++.+.++-+..-.. +.......+++.|..++
T Consensus 10 ~~~~~~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~-----------~~~~v~g~le~kyk~~~ 78 (295)
T 3emn_X 10 HGSMAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANT-----------ETTKVNGSLETKYRWTE 78 (295)
T ss_dssp ---CCSCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEET-----------TTCCEEEEEEEEEEETT
T ss_pred CCCcCCCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecC-----------CCCceeeEEEEEEEecC
Confidence 4568899999999999999985 67888899999998777555443332221 01234577899998876
Q ss_pred --eEEEEEECCCccEEEEEEe--eccccceeEEEEEecCCCCcceeeEEEEEEeCCeEEEEE--E--cCCCeeEEEEEEe
Q 021528 107 --LMLIGRVLTDGRLNARVKC--DLSDNLSLKANAQLTNEPHMSHGMINFDYKGKDYRTQFQ--F--GNGALFGASYIQN 178 (311)
Q Consensus 107 --~~l~~~~d~dg~L~~~~~~--~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d~t~~lk--~--~n~~~~~~s~lq~ 178 (311)
+.+..+||+|++|.+++.. .+.+++++.+.+.+.|++..+..+++++|+.+++++.+. + .+|.+...-.+
T Consensus 79 ~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~-- 156 (295)
T 3emn_X 79 YGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVL-- 156 (295)
T ss_dssp TTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEE--
T ss_pred CcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEE--
Confidence 7899999999999998864 499999999999998876667899999999999988554 4 56844332233
Q ss_pred ecCceeeeeEEEEeccCC-ceeeEEEEEEeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEE
Q 021528 179 VSPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYD 257 (311)
Q Consensus 179 vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~ 257 (311)
.+++|.+|+|+.|+...+ .+.++++++|+.++|++++++++...+.+|||||++|++++|+|+.|+.+.+++.++||++
T Consensus 157 g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~k 236 (295)
T 3emn_X 157 GYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAK 236 (295)
T ss_dssp EETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEE
Confidence 479999999999998764 5889999999999999999999988999999999999999999999999999999999999
Q ss_pred EEec-ceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC---CCeeeeEEEEe
Q 021528 258 YILR-QCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK---KDYKFGFGLTV 310 (311)
Q Consensus 258 y~~~-~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~---~~~kfG~gl~~ 310 (311)
|.++ +++|||+||++|++++.||++|+|+++|+||++||+++ +.||||+||+|
T Consensus 237 y~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l 293 (295)
T 3emn_X 237 YQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEF 293 (295)
T ss_dssp ECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEE
Confidence 9995 78999999999999999999999999999999999986 78999999986
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=99.57 E-value=5.6e-12 Score=115.44 Aligned_cols=164 Identities=16% Similarity=0.288 Sum_probs=127.0
Q ss_pred ceEEEEEEeCCceEEEEEECC--Cc-cEEEEEEeeccccceeEEEEEecCC-CCcceeeEEEEEEeCCeEEEEEEcCCCe
Q 021528 95 HYEFGANYIDPKLMLIGRVLT--DG-RLNARVKCDLSDNLSLKANAQLTNE-PHMSHGMINFDYKGKDYRTQFQFGNGAL 170 (311)
Q Consensus 95 ~y~f~~~y~~~~~~l~~~~d~--dg-~L~~~~~~~~~~~l~~k~~~~~~~~-~~~~~~~~~~dy~g~d~t~~lk~~n~~~ 170 (311)
..++.+.|..+...+.+.+|- .+ .+++..... .+++.+-.++.+.-. .....+.+.+.|..+||.+++++.+...
T Consensus 123 s~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g-~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~~~~ 201 (295)
T 3emn_X 123 NAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG-YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTE 201 (295)
T ss_dssp EEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEETTTE
T ss_pred ceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe-eCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECCCCe
Confidence 467888999988777666654 23 333322221 367766666665432 3345688899999999999999988788
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCC-CeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecc-c
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYEND-KMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMS-R 248 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~-~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~-~ 248 (311)
+.+||+|+|++++++|+|+.|....+.+.+++|++|..+ +.+++++|++.+.+++.|.|+++|++.+....+.+... .
T Consensus 202 ~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~ 281 (295)
T 3emn_X 202 FGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVN 281 (295)
T ss_dssp EEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTT
T ss_pred EEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccC
Confidence 999999999999999999999987778999999999996 68899999999999999999999999888888887653 1
Q ss_pred eeEEEEEEEEE
Q 021528 249 DVTSSVGYDYI 259 (311)
Q Consensus 249 ~~~~~vG~~y~ 259 (311)
+....+|....
T Consensus 282 ~~~~K~Gl~l~ 292 (295)
T 3emn_X 282 AGGHKLGLGLE 292 (295)
T ss_dssp TSCCEEEEEEE
T ss_pred CCCCcEEEEEE
Confidence 23344444443
No 3
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=95.53 E-value=0.79 Score=43.41 Aligned_cols=96 Identities=10% Similarity=0.121 Sum_probs=61.7
Q ss_pred EEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEEE--EEEcccceEEEEEEEEccCCeEEEEEe
Q 021528 164 QFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVAT--GQVASTGMVALSYVQKLSEKVSLATDL 241 (311)
Q Consensus 164 k~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~~--~~~~~~g~~~~sY~~kvs~~l~lg~el 241 (311)
++.-|..+.++..+.++++|.+.+++.|..-+....+. ..+........ ....+.-.+.++-.++++|++++-+-+
T Consensus 268 ~~~lP~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~--~~~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~ 345 (427)
T 3pgu_A 268 TLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLK--ATSTSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI 345 (427)
T ss_dssp EEEECEEEEEEEEEEEETTEEEEEEEEEEEESSCSCEE--EEEETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEE
T ss_pred EecCCcEEEEEEEEecCCCEEEEEEEEEEEeccccceE--EEcCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEE
Confidence 33348889999999999999999999998544322111 12211111111 112234466777788888888888888
Q ss_pred eeeec-------------cceeEEEEEEEEEec
Q 021528 242 MYNYM-------------SRDVTSSVGYDYILR 261 (311)
Q Consensus 242 ~~~~~-------------~~~~~~~vG~~y~~~ 261 (311)
.|+.. .....+++|+.|++.
T Consensus 346 ~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~ 378 (427)
T 3pgu_A 346 AFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFN 378 (427)
T ss_dssp EEEECCCCGGGCBTTBCCSCEEEEEEEEEEESS
T ss_pred EEccCCCCcccccccccCCCCEEEEEeEEEEcC
Confidence 88654 124457888888874
No 4
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=92.59 E-value=7.2 Score=36.97 Aligned_cols=99 Identities=13% Similarity=0.215 Sum_probs=60.8
Q ss_pred EEEEEEcCCCeeEEEEEEeecCceeeeeEEEEeccCCceeeEEEEEEeCCCeEE--EEEEcccceEEEEEEEEccCCeEE
Q 021528 160 RTQFQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDKMVA--TGQVASTGMVALSYVQKLSEKVSL 237 (311)
Q Consensus 160 t~~lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~~~~--~~~~~~~g~~~~sY~~kvs~~l~l 237 (311)
....++.-|..+.++..+.++++|.+.+++.|..-+....+. .+... .... .....+.-.+.++-.++++|++++
T Consensus 277 ~~~~~~~lP~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~--~~~~~-~~~~~~~~~~~d~~~~~lG~eY~~~~~~tl 353 (451)
T 3dwo_X 277 SASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLT--LKSHG-NTIVSIPYTYRNTWTLAVGGDYKVTDQWTM 353 (451)
T ss_dssp EEEEECCBCCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEE--EEETT-EEEEEEECCCCCEEEEEEEEEEESSSSEEE
T ss_pred ceEEEecCCcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeE--EEcCC-ccccccccCceeeeEEEEEEEEEeCCCEEE
Confidence 344555668899999999999999999999998644321111 11111 0111 111223445666777777777777
Q ss_pred EEEeeeeec-------------cceeEEEEEEEEEec
Q 021528 238 ATDLMYNYM-------------SRDVTSSVGYDYILR 261 (311)
Q Consensus 238 g~el~~~~~-------------~~~~~~~vG~~y~~~ 261 (311)
-+-+.|+.. .....+++|..|.+.
T Consensus 354 RaG~~yd~sp~~~~~~~~~~P~~~~~~~s~G~~y~~~ 390 (451)
T 3dwo_X 354 RAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQ 390 (451)
T ss_dssp EEEEEEECCSCCTTTCCSSSCCCCEEEEEEEEEEECS
T ss_pred EEEEEEccCCCCcccccccccCCCCEEEEEeEEEEec
Confidence 777777543 123456777777765
No 5
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=91.75 E-value=8.5 Score=36.00 Aligned_cols=97 Identities=8% Similarity=0.083 Sum_probs=59.6
Q ss_pred EEEcCCCeeEEEEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCC------eEEEEEEcccceEEEEEEEEccCCe
Q 021528 163 FQFGNGALFGASYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDK------MVATGQVASTGMVALSYVQKLSEKV 235 (311)
Q Consensus 163 lk~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~------~~~~~~~~~~g~~~~sY~~kvs~~l 235 (311)
.++.-|..+.++..++++++|.+.+++.|..-.. ... +..++..+. ........+.-.+.++--+++++++
T Consensus 273 ~~~~lP~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~ 350 (441)
T 3bry_A 273 RNFQMPAQLTVGISHQFNDQLSVSADYQRVFWSSVMKD--MNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKW 350 (441)
T ss_dssp ECCCBCCEEEEEEEEESSSSEEEEEEEEEECGGGCCSE--EEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTE
T ss_pred cccCCccEEEEeEEEEeCCCEEEEEEEEEEEccchhhh--eeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCe
Confidence 3344588899999999999999999999976333 221 222332211 1122222334456667777777877
Q ss_pred EEEEEeeeeecc-------------ceeEEEEEEEEEec
Q 021528 236 SLATDLMYNYMS-------------RDVTSSVGYDYILR 261 (311)
Q Consensus 236 ~lg~el~~~~~~-------------~~~~~~vG~~y~~~ 261 (311)
++-+-+.|+... .+..+++|+.|.+.
T Consensus 351 ~lRaG~~yd~s~~~~~~~~~~~P~~~~~~~s~G~gy~~~ 389 (441)
T 3bry_A 351 TFRGGFHYAQEAIPGNMLLAVVPATPTTSLTGGVSYAIG 389 (441)
T ss_dssp EEEEEEEEEEC---------------CEEEEEEEEEESS
T ss_pred EEEEeeecccCCCCcccccccccCcCceEEEeeeEEEcC
Confidence 777777775531 24456777777764
No 6
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=90.56 E-value=11 Score=35.23 Aligned_cols=95 Identities=8% Similarity=0.069 Sum_probs=56.2
Q ss_pred EcCCCeeEEEEEEeecCceeeeeEEEEeccCC-ceeeEEEEEEeCCCeEE----EEEEcccceEEEEEEEEccCCeEEEE
Q 021528 165 FGNGALFGASYIQNVSPHLSLGGEVFWAGQHR-KSGIGYAARYENDKMVA----TGQVASTGMVALSYVQKLSEKVSLAT 239 (311)
Q Consensus 165 ~~n~~~~~~s~lq~vt~~l~lG~e~~~~~~~~-~t~~~~~~rY~~~~~~~----~~~~~~~g~~~~sY~~kvs~~l~lg~ 239 (311)
+.-|..+.++..++++++|.+.+++.|..-+. ...+ .+++..+.-.. .....+.-.+.++--++++|++++-+
T Consensus 275 ~~lP~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l--~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa 352 (439)
T 3bs0_A 275 FEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSM--NVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRA 352 (439)
T ss_dssp CCCCCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-C--CCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEE
T ss_pred cCCCcEEEEeEEEEeCCCEEEEEEEEEEEccchhhhe--eeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEE
Confidence 44588899999999999999999999875332 1100 01111000000 00112334566667777778777777
Q ss_pred Eeeeeec-------------cceeEEEEEEEEEec
Q 021528 240 DLMYNYM-------------SRDVTSSVGYDYILR 261 (311)
Q Consensus 240 el~~~~~-------------~~~~~~~vG~~y~~~ 261 (311)
-+.|+.. ..+..+++|+.|.+.
T Consensus 353 G~~yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~ 387 (439)
T 3bs0_A 353 GYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFD 387 (439)
T ss_dssp EEEECC------CCCTTSCCCCSEEEEEEEEEESS
T ss_pred eeEcccCCCCcccccccccCccceEEEeeeEEEcC
Confidence 7777543 134567777777764
No 7
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=89.02 E-value=16 Score=34.61 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=40.5
Q ss_pred EEEEEcccceEEEEEEEEccCCeEEEEEeeeeec----------------------cceeEEEEEEEEEe-cceEEEEEE
Q 021528 213 ATGQVASTGMVALSYVQKLSEKVSLATDLMYNYM----------------------SRDVTSSVGYDYIL-RQCRLRGKI 269 (311)
Q Consensus 213 ~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~----------------------~~~~~~~vG~~y~~-~~s~vk~~i 269 (311)
....+.--..+.++..+++++++.+.+++.|..- +....+++|.+|++ +++++|+-+
T Consensus 278 ~~~~~~lP~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~ 357 (451)
T 3dwo_X 278 ASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGV 357 (451)
T ss_dssp EEEECCBCCEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEE
T ss_pred eEEEecCCcEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEE
Confidence 3444554567888999999999999999887531 12356788888888 566777644
No 8
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=88.70 E-value=16 Score=34.31 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.5
Q ss_pred EEcccceEEEEEEEEccCCeEEEEEeeee
Q 021528 216 QVASTGMVALSYVQKLSEKVSLATDLMYN 244 (311)
Q Consensus 216 ~~~~~g~~~~sY~~kvs~~l~lg~el~~~ 244 (311)
.+.-...+.++..++++|++.+.++++|.
T Consensus 268 ~~~lP~~~~~g~~~~~~~~~~l~~d~~~~ 296 (427)
T 3pgu_A 268 TLNLPEMWEVSGYNRVDPQWAIHYSLAYT 296 (427)
T ss_dssp EEEECEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EecCCcEEEEEEEEecCCCEEEEEEEEEE
Confidence 33335678899999999999999999884
No 9
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=83.68 E-value=28 Score=32.36 Aligned_cols=53 Identities=11% Similarity=0.271 Sum_probs=37.6
Q ss_pred EcccceEEEEEEEEccCCeEEEEEeeeeec----------------------------cceeEEEEEEEEEe-cceEEEE
Q 021528 217 VASTGMVALSYVQKLSEKVSLATDLMYNYM----------------------------SRDVTSSVGYDYIL-RQCRLRG 267 (311)
Q Consensus 217 ~~~~g~~~~sY~~kvs~~l~lg~el~~~~~----------------------------~~~~~~~vG~~y~~-~~s~vk~ 267 (311)
+.-...+.++..+++++++.+.+++.|..- +....+++|++|.+ ++.++|+
T Consensus 275 ~~lP~~~~~g~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRa 354 (441)
T 3bry_A 275 FQMPAQLTVGISHQFNDQLSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRG 354 (441)
T ss_dssp CCBCCEEEEEEEEESSSSEEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEE
T ss_pred cCCccEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEE
Confidence 333457889999999999999998887321 11456788888888 5567776
Q ss_pred EE
Q 021528 268 KI 269 (311)
Q Consensus 268 ~i 269 (311)
-+
T Consensus 355 G~ 356 (441)
T 3bry_A 355 GF 356 (441)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 10
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=83.11 E-value=25 Score=31.41 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=95.4
Q ss_pred EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCC-------eEEEEE--E--cCCCeeEEEEE
Q 021528 110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKD-------YRTQFQ--F--GNGALFGASYI 176 (311)
Q Consensus 110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d-------~t~~lk--~--~n~~~~~~s~l 176 (311)
+-+|..+ ..+.+++..++.+.+.+.+.....-. .....+-+-||..++ ++.+-+ + .+.--+.+.+.
T Consensus 41 qL~W~~~n~~~~~~~~~~~l~~~~~l~~~g~~~~~-~~sG~M~D~DW~~~~~~~~~t~~S~h~~t~l~~a~~~dl~~~~~ 119 (297)
T 1i78_A 41 QLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLG-SRGGNMVDQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGW 119 (297)
T ss_dssp EEEEEEEEEEEEEEEEEECCSSSEEEEEEEEEESS-CEEEEEEEEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEeccCCCceEEEEEEEEecCCEEEEEEEEEecc-CCCCceeeccCCCCCCCCCCccceecCCCCCcceEEEEEEeEEE
Confidence 3366654 45667777888888888777765432 123333456664332 232211 1 11111223334
Q ss_pred EeecCceeeeeEEEEeccCCceeeEEEEEEeCCC------eEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeecccee
Q 021528 177 QNVSPHLSLGGEVFWAGQHRKSGIGYAARYENDK------MVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDV 250 (311)
Q Consensus 177 q~vt~~l~lG~e~~~~~~~~~t~~~~~~rY~~~~------~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~ 250 (311)
--..+.+.+|..+-|+.. +..-.+.++.|.-++ .+.+. +.+...++|.|+.. -.-+|+..+|... ..
T Consensus 120 ll~~~~~~lg~~~Gy~y~-~~~w~A~gG~~~Y~~~~~~~~~~~~~---P~~~~~I~Y~Q~~~-~pyiGL~g~y~~~--~~ 192 (297)
T 1i78_A 120 LLNEPNYRLGLMAGYQES-RYSFTARGGSYIYSSEEGFRDDIGSF---PNGERAIGYKQRFK-MPYIGLTGSYRYE--DF 192 (297)
T ss_dssp EEECSSEEEEEEEEEEEE-EEEEEEECCEEEBCCTTCSSCBCCBC---CTTCSEEEEEEEEE-EEEEEEEEEEEET--TE
T ss_pred EecCCceEEeEEcccEEE-eeeeeecCceEEcCCCCccccccccc---CCCccceeEEEEEE-eeeeeEEEEEeeC--cE
Confidence 345677788888877763 222233333333221 12221 34567899999995 4555555555543 24
Q ss_pred EEEEEEEEEe--------------cceEEEEEEcC--CceEEeeeeecccCceEEEEEEEEec
Q 021528 251 TSSVGYDYIL--------------RQCRLRGKIDS--NGCAAAYLEERLNMGLNFILSAEIDH 297 (311)
Q Consensus 251 ~~~vG~~y~~--------------~~s~vk~~ids--~g~v~~~~e~~l~p~~~l~lS~~ld~ 297 (311)
.+++.++|.. ++-+++-+.++ ...+++.+...|.|.+.|-+.+..+.
T Consensus 193 ~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 255 (297)
T 1i78_A 193 ELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNR 255 (297)
T ss_dssp EEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 4444444421 22334444443 23366677777888888888887774
No 11
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=75.33 E-value=44 Score=29.70 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=99.7
Q ss_pred EEEECCC--ccEEEEEEeeccccceeEEEEEecCCCCcceeeEEEEEEeCC------eEEE----EEEcCCCeeEEEEEE
Q 021528 110 IGRVLTD--GRLNARVKCDLSDNLSLKANAQLTNEPHMSHGMINFDYKGKD------YRTQ----FQFGNGALFGASYIQ 177 (311)
Q Consensus 110 ~~~~d~d--g~L~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~dy~g~d------~t~~----lk~~n~~~~~~s~lq 177 (311)
+-+|..+ ..+.+++.+++.+++.+.+.....-. .....+-+-||..++ ++.+ ++..+.--+.+.+.=
T Consensus 42 ~L~W~~~n~~~~~~~~~~~~~~~~~l~~~g~~~l~-~~sG~M~D~DW~~~~~~~~T~~S~h~~t~l~~a~~~dl~~~~~l 120 (293)
T 2x55_A 42 QLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLA-SGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWL 120 (293)
T ss_dssp EEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEESS-CEEEEEEEEECCCTTCSSCSEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEeccCCCceEEEEEEEEecCCeEEEEEEEEecc-CCCCceeeccCCCCCCCCCceeeecCCCCCceeEEEEEeeeEEE
Confidence 3466654 35567788888888888777754321 222333355664332 2222 111111112233333
Q ss_pred eecCceeeeeEEEEeccCCceeeEEEEE--EeCCCeEEEEEEcccceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEE
Q 021528 178 NVSPHLSLGGEVFWAGQHRKSGIGYAAR--YENDKMVATGQVASTGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVG 255 (311)
Q Consensus 178 ~vt~~l~lG~e~~~~~~~~~t~~~~~~r--Y~~~~~~~~~~~~~~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG 255 (311)
-..+.+.+|..+-|+.. +..-.++++. |..+..+.+ + +.+...++|.|+.. -.-+|+..+|... ...+++.
T Consensus 121 l~~~~~~lg~~~Gy~y~-~~~w~A~gG~~~Y~~~~~~~~--~-p~~~~~I~Y~Q~~~-~pyiGL~g~yr~~--~~~l~~~ 193 (293)
T 2x55_A 121 LQDENYKAGITAGYQET-RFSWTATGGSYSYNNGAYTGN--F-PKGVRVIGYNQRFS-MPYIGLAGQYRIN--DFELNAL 193 (293)
T ss_dssp EECSSEEEEEEEEEEEE-EEEEEEESCEEEETTTTEEEE--C-CTTCEEEEEEEEEE-EEEEEEEEEEEET--TEEEEEE
T ss_pred EcCCCeEEeEEeceEEE-eccccccCCcEEcCCCCcccc--c-CCCCcceeeEEEEE-eeeeeEEEEEEec--cEEEEEE
Confidence 34678888888888763 2333344443 544443322 2 45577899999995 5555556666553 3445555
Q ss_pred EEEEe------------cceEEEEEEcCC--ceEEeeeeecccCceEEEEEEEEec
Q 021528 256 YDYIL------------RQCRLRGKIDSN--GCAAAYLEERLNMGLNFILSAEIDH 297 (311)
Q Consensus 256 ~~y~~------------~~s~vk~~ids~--g~v~~~~e~~l~p~~~l~lS~~ld~ 297 (311)
.+|.. ++-+++-+.+.. ..+++.+...|.|.+.|-+.+..+.
T Consensus 194 ~~~s~~v~a~~~D~H~~R~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 249 (293)
T 2x55_A 194 FKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK 249 (293)
T ss_dssp EEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EecceeEEEecccHHhccCCccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 55531 222344444432 3467777788888888888888874
No 12
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=71.41 E-value=32 Score=31.35 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=38.4
Q ss_pred ceeeEEEEEEeCCCeEEEEEEcc---------------cceEEEEEEEEccCCeEEEEEeeeeecc------ceeEEEEE
Q 021528 197 KSGIGYAARYENDKMVATGQVAS---------------TGMVALSYVQKLSEKVSLATDLMYNYMS------RDVTSSVG 255 (311)
Q Consensus 197 ~t~~~~~~rY~~~~~~~~~~~~~---------------~g~~~~sY~~kvs~~l~lg~el~~~~~~------~~~~~~vG 255 (311)
...+.+++.|+.+.+.+.+.... ...+.+.|.+.+++++.+=++..|.... .+..++||
T Consensus 271 ~~~~~l~a~Y~~g~~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~Ya~y~~~~n~~~~~~~~~~~~~vG 350 (355)
T 3vy8_X 271 QTQVAATAAYRFGNVTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVG 350 (355)
T ss_dssp EEEEEEEEEECBTTEEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEEEEEEESSTTSCEEEEEEEEE
T ss_pred eeEEEEEEEEEcCCeEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEEEEEEEEEEcCCCcccccceEEEee
Confidence 35677777777776655443321 1245677777777777777777664432 24555667
Q ss_pred EEEEe
Q 021528 256 YDYIL 260 (311)
Q Consensus 256 ~~y~~ 260 (311)
.+|+|
T Consensus 351 l~hkF 355 (355)
T 3vy8_X 351 LRHKF 355 (355)
T ss_dssp EEEEC
T ss_pred eEEeC
Confidence 66654
No 13
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=68.16 E-value=76 Score=29.39 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=37.7
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeec--------------------------cceeEEEEEEEEEe-cceEEEEEE
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYM--------------------------SRDVTSSVGYDYIL-RQCRLRGKI 269 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~--------------------------~~~~~~~vG~~y~~-~~s~vk~~i 269 (311)
...+.++..+++++++.+.+++.|..= +....+.+|.+|.+ ++.++|+-+
T Consensus 278 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~ 354 (439)
T 3bs0_A 278 PASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGY 354 (439)
T ss_dssp CCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEE
T ss_pred CcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEee
Confidence 457889999999999999999887321 11245788999988 567777655
No 14
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=59.07 E-value=93 Score=27.29 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=36.2
Q ss_pred eeeEEEE--EEeCCCeE-EEEEEcc-----cceEEEEEEEEccCCeEEEEEeeeeecc-ceeEEEEEEEEEe
Q 021528 198 SGIGYAA--RYENDKMV-ATGQVAS-----TGMVALSYVQKLSEKVSLATDLMYNYMS-RDVTSSVGYDYIL 260 (311)
Q Consensus 198 t~~~~~~--rY~~~~~~-~~~~~~~-----~g~~~~sY~~kvs~~l~lg~el~~~~~~-~~~~~~vG~~y~~ 260 (311)
..+.+++ .|...... +.+.... ...+.+.|.|.|++++.+-++...+... .+..+.+|.||+|
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~~~~~~~~~Gvr~~F 301 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMVADLGVKFKF 301 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSSSCCCEEEEEEEEEC
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCCCCceeEEEEeEEeC
Confidence 3356666 66555443 4444321 2356677777777777777776654432 1345777777764
No 15
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=50.91 E-value=1.3e+02 Score=26.56 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=50.9
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCC
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRK 299 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~ 299 (311)
.-.+.+.|+--..+++.+|+.+-|+.. +..-...|+.|......-.+++ .++..+..|+|++..+ -+.|.++.-.
T Consensus 111 ~~dl~~~~~ll~~~~~~lg~~~Gy~y~-~~~w~A~gG~~~Y~~~~~~~~~-p~~~~~I~Y~Q~~~~p-yiGL~g~yr~-- 185 (293)
T 2x55_A 111 EYDLNVKGWLLQDENYKAGITAGYQET-RFSWTATGGSYSYNNGAYTGNF-PKGVRVIGYNQRFSMP-YIGLAGQYRI-- 185 (293)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEEEEEE-EEEEEEESCEEEETTTTEEEEC-CTTCEEEEEEEEEEEE-EEEEEEEEEE--
T ss_pred EEEEeeeEEEEcCCCeEEeEEeceEEE-eccccccCCcEEcCCCCccccc-CCCCcceeeEEEEEee-eeeEEEEEEe--
Confidence 346778888777899999999988774 3333445555444322112333 5678888999998542 3444444443
Q ss_pred CCeeeeEEEE
Q 021528 300 KDYKFGFGLT 309 (311)
Q Consensus 300 ~~~kfG~gl~ 309 (311)
+..+|++.+.
T Consensus 186 ~~~~l~~~~~ 195 (293)
T 2x55_A 186 NDFELNALFK 195 (293)
T ss_dssp TTEEEEEEEE
T ss_pred ccEEEEEEEe
Confidence 2455555443
No 16
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening cell membrane, cell outer membrane, ION transport, membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Probab=49.22 E-value=1.3e+02 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=21.1
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeec------cceeEEEEEEEEEe
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYM------SRDVTSSVGYDYIL 260 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~------~~~~~~~vG~~y~~ 260 (311)
++.+.|.+.+++++.+=++..|... ..+..+.+|.||.|
T Consensus 311 ~~~lg~~Y~LSKrT~lY~~~~y~~~~~~~~~~~~~~~~vGirh~F 355 (355)
T 3a2s_X 311 QVIVGADYDFSKRTSALVSAGWLKQGKGAGKVEQTASMVGLRHKF 355 (355)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEEESSTTSCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeeccceEEEEEEEEEEccCCCCCcceEEEEEEEEEeC
Confidence 4556666666666666666655432 12334555555543
No 17
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=47.78 E-value=90 Score=27.31 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=32.6
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeecc---ceeEEEEEEEEEec
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYMS---RDVTSSVGYDYILR 261 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~~---~~~~~~vG~~y~~~ 261 (311)
...++++.--++++++.+.+++.++... ....+.+|.||.|.
T Consensus 263 ~~~~g~G~~~~l~~~~~l~~~~~~~~g~~~~~~~~~~~G~ry~F~ 307 (308)
T 3aeh_A 263 RMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDDAINANIRYSFL 307 (308)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEESCSSEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEeeCCCcccccEEEEEEEEEcC
Confidence 3467788888888899998888887753 35678888888875
No 18
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=43.38 E-value=1.4e+02 Score=26.25 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=35.1
Q ss_pred eeeEEEEEEeCCCeEEEEEEcc--------------cceEEEEEEEEccCCeEEEEEeeeeecc------ceeEEEEEEE
Q 021528 198 SGIGYAARYENDKMVATGQVAS--------------TGMVALSYVQKLSEKVSLATDLMYNYMS------RDVTSSVGYD 257 (311)
Q Consensus 198 t~~~~~~rY~~~~~~~~~~~~~--------------~g~~~~sY~~kvs~~l~lg~el~~~~~~------~~~~~~vG~~ 257 (311)
..+.+++.|....++..+.+.. ..++.+.|-+.+++|+.+=++..|.... ....+.||.|
T Consensus 245 ~~~~~~~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKRT~lY~~~~~~~~~~~~~~~~~~~~~vGir 324 (327)
T 4aui_A 245 TEVATTVAYRFGNVTPRVSYAHGFKGSVYDADHDNTYDQVVVGAEYDFSKRTSALVSAGWLQKGKGAEKFVATVGGVGLR 324 (327)
T ss_dssp EEEEEEEEECBTTBCCEEEEEEECCCCCTTCCCCCCEEEEEEEEEEESSSSEEEEEEEEEEEEECSSEEEEEEEEEEEEE
T ss_pred ceeeeeeeEEeeeeeEEEEEEEEEeeeeeccCCCCccEEEEEEEEEEeccCceeeEEEEEEEccCCcccccccEEEEEEE
Confidence 3455666776665543333210 1246677778888877777776664331 1334456666
Q ss_pred EEe
Q 021528 258 YIL 260 (311)
Q Consensus 258 y~~ 260 (311)
|+|
T Consensus 325 H~F 327 (327)
T 4aui_A 325 HKF 327 (327)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 19
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=41.62 E-value=57 Score=27.99 Aligned_cols=21 Identities=29% Similarity=0.820 Sum_probs=13.1
Q ss_pred EEEEEecCCCCeeeeEEEEeC
Q 021528 291 LSAEIDHRKKDYKFGFGLTVG 311 (311)
Q Consensus 291 lS~~ld~~~~~~kfG~gl~~G 311 (311)
++.+++.+.+.+-||+|+.+|
T Consensus 178 ~~~d~~~kq~G~gvglgv~v~ 198 (253)
T 2vdf_A 178 LKKDINQKTNGWGFGLGANIG 198 (253)
T ss_dssp ---CEEEECCEEEEEEEEEEE
T ss_pred cchhhhhcccCceEEeeeehh
Confidence 555666666678888887765
No 20
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=35.46 E-value=2.3e+02 Score=24.98 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=49.9
Q ss_pred cceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecce-EE---EEEEcCCceEEeeeeecccCceEEEEEEEE
Q 021528 220 TGMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQC-RL---RGKIDSNGCAAAYLEERLNMGLNFILSAEI 295 (311)
Q Consensus 220 ~g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s-~v---k~~ids~g~v~~~~e~~l~p~~~l~lS~~l 295 (311)
.-.+.+.|+-...++..+|+.+-|+.. +..-...|+.|..+.. .+ .+++ .++..+..|+|++..+ -+.|.++.
T Consensus 111 ~~dl~~~~~ll~~~~~~lg~~~Gy~y~-~~~w~A~gG~~~Y~~~~~~~~~~~~~-P~~~~~I~Y~Q~~~~p-yiGL~g~y 187 (297)
T 1i78_A 111 EFDLNIKGWLLNEPNYRLGLMAGYQES-RYSFTARGGSYIYSSEEGFRDDIGSF-PNGERAIGYKQRFKMP-YIGLTGSY 187 (297)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEEEEEE-EEEEEEECCEEEBCCTTCSSCBCCBC-CTTCSEEEEEEEEEEE-EEEEEEEE
T ss_pred EEEEEeEEEEecCCceEEeEEcccEEE-eeeeeecCceEEcCCCCccccccccc-CCCccceeEEEEEEee-eeeEEEEE
Confidence 345677788888899999998888764 3333344555554321 11 1122 4667888999998642 34444444
Q ss_pred ecCCCCeeeeEEEE
Q 021528 296 DHRKKDYKFGFGLT 309 (311)
Q Consensus 296 d~~~~~~kfG~gl~ 309 (311)
-.. ..+|++.+.
T Consensus 188 ~~~--~~~l~~~~~ 199 (297)
T 1i78_A 188 RYE--DFELGGTFK 199 (297)
T ss_dssp EET--TEEEEEEEE
T ss_pred eeC--cEEEEEEEe
Confidence 332 366655543
No 21
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=32.07 E-value=95 Score=26.68 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=7.2
Q ss_pred EEEEEeCCeEEEEEE
Q 021528 151 NFDYKGKDYRTQFQF 165 (311)
Q Consensus 151 ~~dy~g~d~t~~lk~ 165 (311)
+.+|.+..+.+.+.+
T Consensus 130 ~~~~~~~~~~~~~e~ 144 (284)
T 3qq2_A 130 TADYRTSGAAWSLEG 144 (284)
T ss_dssp EEEEEEEEEEEEEEE
T ss_pred ccccccceEEEEEec
Confidence 344555555554444
No 22
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=31.28 E-value=1.3e+02 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=20.1
Q ss_pred ceEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEE
Q 021528 221 GMVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYI 259 (311)
Q Consensus 221 g~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~ 259 (311)
..+.+++.++.++++.+-+...++. ..+..+.+|..|.
T Consensus 67 ~AvAvG~~~~~n~~~~~~~~~s~~~-~g~~~~gaGv~~~ 104 (105)
T 2lme_A 67 QALAIGSGYRVNESVALKAGVAYAG-SSDVMYNASFNIE 104 (105)
T ss_dssp EEEEEEEEEEESSSBCCEEEEEEET-TTEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCCEEEEEEEEEcC-CCCEEEEEEEEeE
Confidence 3455555566677666655555543 2344445555443
No 23
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=30.91 E-value=2.4e+02 Score=23.65 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=22.3
Q ss_pred cccceEEEEEEEEccCCeEEEEEeeeeecc
Q 021528 218 ASTGMVALSYVQKLSEKVSLATDLMYNYMS 247 (311)
Q Consensus 218 ~~~g~~~~sY~~kvs~~l~lg~el~~~~~~ 247 (311)
.+..++.++|..|++|++.+...+.+...+
T Consensus 51 ~ng~E~~~~Y~~k~~d~~~l~PG~~~~~~s 80 (214)
T 2wjr_A 51 LNDVQVEVNYAIKLDDQWTVRPGMLTHFSS 80 (214)
T ss_dssp -CEEEEEEEECEESSSSEEEEEEEEEEEET
T ss_pred cccEEEEEEEEEEcCCCEEEecceEEEecC
Confidence 344578899999999988888877765543
No 24
>1qjp_A Outer membrane protein A; HET: C8E; 1.65A {Escherichia coli} SCOP: f.4.1.1 PDB: 1bxw_A* 1g90_A 2ge4_A
Probab=28.44 E-value=1.4e+02 Score=22.90 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=16.3
Q ss_pred eEEEEEEEEccCCeEEEEEeeeee
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNY 245 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~ 245 (311)
.+++..-.+++|++.+.+|..+..
T Consensus 122 ~~G~G~~y~~~~~~~~~~ey~~~~ 145 (171)
T 1qjp_A 122 VFAGGVEYAITPEIATRLEYQWTN 145 (171)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEeeEEEEECcceEEEEEEEEEe
Confidence 455666667777877777777643
No 25
>1p4t_A Outer membrane protein NSPA; beta barrel; HET: CXE; 2.55A {Neisseria meningitidis} SCOP: f.4.1.1
Probab=27.65 E-value=1.8e+02 Score=22.06 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=13.4
Q ss_pred EEEEEEEEccCCeEEEEEeeee
Q 021528 223 VALSYVQKLSEKVSLATDLMYN 244 (311)
Q Consensus 223 ~~~sY~~kvs~~l~lg~el~~~ 244 (311)
+++..-..++|++.+.+|..|.
T Consensus 110 ~g~Gv~y~~~~~~~l~~ey~y~ 131 (155)
T 1p4t_A 110 VLTGVSYAVTPNVDLDAGYRYN 131 (155)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEEEEEE
Confidence 3455555667777776666663
No 26
>3slt_A Serine protease ESPP; beta barrel, membrane protein, asparagine cyclization, autoc protein transport; HET: C8E; 2.46A {Escherichia coli} PDB: 3slj_A* 3slo_A* 2qom_A
Probab=25.34 E-value=1.5e+02 Score=26.12 Aligned_cols=23 Identities=4% Similarity=0.198 Sum_probs=10.6
Q ss_pred EEEEEEEEccCCeEEEEEeeeee
Q 021528 223 VALSYVQKLSEKVSLATDLMYNY 245 (311)
Q Consensus 223 ~~~sY~~kvs~~l~lg~el~~~~ 245 (311)
++++.--+|++++.+.+++.+..
T Consensus 273 ~g~G~~~~l~~~~sl~~~~~~~~ 295 (313)
T 3slt_A 273 MSVGLNAEIRDNVRFGLEFEKSA 295 (313)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEEecc
Confidence 44444444444444444444433
No 27
>1qd5_A Outer membrane phospholipase A; anti-parallel beta barrel, membrane protein; HET: BOG; 2.17A {Escherichia coli} SCOP: f.4.2.1 PDB: 1fw2_A* 1fw3_A* 1ilz_A* 1ild_A* 1im0_A*
Probab=25.10 E-value=3.5e+02 Score=23.68 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=35.6
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeeccceeEEEEEEEEEecceEEEEEEcCCceEEeeeeecccCceEEEEEEEEecCCCC
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMSRDVTSSVGYDYILRQCRLRGKIDSNGCAAAYLEERLNMGLNFILSAEIDHRKKD 301 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~~~~~~~vG~~y~~~~s~vk~~ids~g~v~~~~e~~l~p~~~l~lS~~ld~~~~~ 301 (311)
.+.+.|-. . +-.+.+.+.++.......+.+++.|-+..- +++-+ +.-..|-+- .||+....
T Consensus 202 el~~~y~~--~-~~~~sl~~R~n~~~~~G~vel~~sfPl~~~-l~~y~----QyF~GYGES-----------LiDYN~~~ 262 (275)
T 1qd5_A 202 QLKIGYHL--G-DAVLSAKGQYNWNTGYGGAELGLSYPITKH-VRLYT----QVYSGYGES-----------LIDYNFNQ 262 (275)
T ss_dssp CEEEEEEE--T-TEEEEEEEEECTTTCCEEEEEEEEEESSSS-CEEEE----EEEEEECSS-----------STTTTCEE
T ss_pred EEEEEEEc--C-CcEEEEEEecCCCCCcceEEEEEEEEcccC-eEEEE----EEeeccCcc-----------hhhhccCC
Confidence 44444432 2 345555665555544445566666655321 22222 222223222 25676677
Q ss_pred eeeeEEEEe
Q 021528 302 YKFGFGLTV 310 (311)
Q Consensus 302 ~kfG~gl~~ 310 (311)
.++|+|+.|
T Consensus 263 ~riGiG~~l 271 (275)
T 1qd5_A 263 TRVGVGVML 271 (275)
T ss_dssp EEEEEEEES
T ss_pred ceEEEEEEE
Confidence 888888876
No 28
>3qq2_A BRKA autotransporter; beta barrel, transmembrane, membrane protein-protein transpo complex; 3.00A {Bordetella pertussis}
Probab=24.04 E-value=3.3e+02 Score=23.06 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=19.3
Q ss_pred eEEEEEEeecCceeeeeEEEEeccCC---ceeeEEEEEE
Q 021528 171 FGASYIQNVSPHLSLGGEVFWAGQHR---KSGIGYAARY 206 (311)
Q Consensus 171 ~~~s~lq~vt~~l~lG~e~~~~~~~~---~t~~~~~~rY 206 (311)
+++.+--++++++.+.+++.++.... ....++++||
T Consensus 244 ~g~G~~~~~~~~~sl~~~~~~~~g~~~~~~~~~~~G~ry 282 (284)
T 3qq2_A 244 LGAGVDAALGKGHNLYASYEYAAGDRINIPWSFHAGYRY 282 (284)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEESSCEEEEEEEEEEEE
T ss_pred EeeEEEEEECCCEEEEEEEEEccCCCcCCccEEEEEEEE
Confidence 34444455666666666666654332 2344555555
No 29
>1qd6_C Protein (outer membrane phospholipase (ompla)); anti-parallel beta barrel dimer, membrane protein; HET: HDS; 2.10A {Escherichia coli} SCOP: f.4.2.1
Probab=23.35 E-value=3.5e+02 Score=23.13 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred EecCCCCeeeeEEEEe
Q 021528 295 IDHRKKDYKFGFGLTV 310 (311)
Q Consensus 295 ld~~~~~~kfG~gl~~ 310 (311)
||+.....++|+|+.|
T Consensus 221 iDYn~~~~riGiG~~l 236 (240)
T 1qd6_C 221 IDYNFNQTRVGVGVML 236 (240)
T ss_dssp GGTTCEEEEEEEEEES
T ss_pred hhhccCCceEEEEEEE
Confidence 5666667788888765
No 30
>2x27_X Outer membrane protein OPRG; beta barrel, channel; HET: C8E; 2.40A {Pseudomonas aeruginosa}
Probab=20.64 E-value=3.5e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=21.0
Q ss_pred EECCCccEEEEEEeeccccceeEEEEEec
Q 021528 112 RVLTDGRLNARVKCDLSDNLSLKANAQLT 140 (311)
Q Consensus 112 ~~d~dg~L~~~~~~~~~~~l~~k~~~~~~ 140 (311)
++|.+-.+...+.|.+++++++++.+.+.
T Consensus 41 ~~~~~~~~gl~~gY~ftd~~~~El~~~~~ 69 (212)
T 2x27_X 41 TVDSDTQLGLTFTYMFADKWGVELVAATP 69 (212)
T ss_dssp EECCEEEEEEEEEEESSSSEEEEEEEESC
T ss_pred EECCCcEEEEEEEEEecCCEEEEEEEecC
Confidence 45555566678889999999888776543
No 31
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=20.14 E-value=3.1e+02 Score=21.31 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=22.4
Q ss_pred eEEEEEEEEccCCeEEEEEeeeeecc--ceeEEEEEEEEEe
Q 021528 222 MVALSYVQKLSEKVSLATDLMYNYMS--RDVTSSVGYDYIL 260 (311)
Q Consensus 222 ~~~~sY~~kvs~~l~lg~el~~~~~~--~~~~~~vG~~y~~ 260 (311)
.++++.-..++|++.+-+|.+|..-. ....+++|..|+|
T Consensus 117 ~~GaGvey~~~~n~~~~~eY~y~~~~d~~~~~~~vGv~YrF 157 (157)
T 3qra_A 117 AYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF 157 (157)
T ss_dssp EEEEEEEECSSTTEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEecCCEEEEEEEEEEecCCCcccEEEEEEEeEC
Confidence 34566666677777777777664321 2345555655543
Done!