BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021529
(311 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359487708|ref|XP_002278964.2| PREDICTED: flap endonuclease 1-like [Vitis vinifera]
Length = 384
Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/307 (88%), Positives = 297/307 (96%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR+S+RADAT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+E GNKE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+
Sbjct: 113 TEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEARRLFKEP+V +D
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+EQL IKWSAPDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKPV ++
Sbjct: 293 DEQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSS 352
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 353 SIPIKRK 359
>gi|296089863|emb|CBI39682.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/307 (88%), Positives = 297/307 (96%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR+S+RADAT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGLKPVYVFDGKPPDLKKQELAKRFSRRADATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+E GNKE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+
Sbjct: 113 TEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEARRLFKEP+V +D
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPQVFSD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+EQL IKWSAPDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKPV ++
Sbjct: 293 DEQLDIKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKTAKNKSSQGRLESFFKPVVSS 352
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 353 SIPIKRK 359
>gi|356575281|ref|XP_003555770.1| PREDICTED: flap endonuclease 1-like [Glycine max]
Length = 382
Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust.
Identities = 271/307 (88%), Positives = 295/307 (96%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+EA+E NKEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+
Sbjct: 113 SEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFG+P+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGSPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGG TALKLIRQHGSIE ILEN+N+ERYQIP++WPYQEARRLFKEP V+TD
Sbjct: 233 CDYCDSIRGIGGLTALKLIRQHGSIENILENLNKERYQIPDNWPYQEARRLFKEPMVITD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E++L IKWS+PDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKP N
Sbjct: 293 EKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFFKPTVNP 352
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 353 SVPIKRK 359
>gi|238481386|ref|NP_001154740.1| flap endonuclease-1 [Arabidopsis thaliana]
gi|317374929|sp|O65251.2|FEN1_ARATH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|332006194|gb|AED93577.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 383
Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust.
Identities = 271/307 (88%), Positives = 293/307 (95%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL
Sbjct: 53 MLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+EAGNKEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+
Sbjct: 113 TGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSG
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EEQL IKW++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352
Query: 301 SAPIKRK 307
S P KRK
Sbjct: 353 SVPAKRK 359
>gi|297812863|ref|XP_002874315.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
gi|297320152|gb|EFH50574.1| hypothetical protein ARALYDRAFT_489493 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/307 (88%), Positives = 293/307 (95%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL
Sbjct: 53 MLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+EAGNKEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+
Sbjct: 113 TGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSG
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EEQL IKW++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352
Query: 301 SAPIKRK 307
S P KRK
Sbjct: 353 SVPAKRK 359
>gi|42570539|ref|NP_850877.2| flap endonuclease-1 [Arabidopsis thaliana]
gi|332006193|gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana]
Length = 453
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 271/307 (88%), Positives = 293/307 (95%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL
Sbjct: 53 MLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+EAGNKEDIEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+
Sbjct: 113 TGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSG
Sbjct: 173 VYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TD
Sbjct: 233 CDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EEQL IKW++PDEEG++ FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPVAN+
Sbjct: 293 EEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKTAKNKSSQGRLESFFKPVANS 352
Query: 301 SAPIKRK 307
S P KRK
Sbjct: 353 SVPAKRK 359
>gi|449510827|ref|XP_004163772.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Cucumis
sativus]
Length = 382
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/307 (87%), Positives = 293/307 (95%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLK QELAKRYSKRADAT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKXQELAKRYSKRADATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A+E GNK+DIEKFSKRTVKVTKQHNDDCKRLL+LMGVPV+EAPSEAEAQCAALCK G+
Sbjct: 113 ADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+IRGIGG TALKLIRQHGSIE+ILENIN+ERYQIP+DWPY+EAR+LFKEP V TD
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EEQL IKW+ PDEEGL+ FLV+ENGFNS+RVTKA+EKIKAAKNKSSQGR+ESFFKPV N
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352
Query: 301 SAPIKRK 307
S IKRK
Sbjct: 353 SVSIKRK 359
>gi|363806970|ref|NP_001242313.1| flap endonuclease 1 [Glycine max]
gi|317376195|sp|C6TEX6.1|FEN1_SOYBN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|255640175|gb|ACU20378.1| unknown [Glycine max]
Length = 382
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 269/307 (87%), Positives = 292/307 (95%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+EA+E NKEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+
Sbjct: 113 SEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY V SEDMDSLTFGAP+FLRHLMDPSS+KIPVMEFEVAKILEELN+TMDQFIDLCILSG
Sbjct: 173 VYGVVSEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEVAKILEELNMTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGG TALKLIRQHGSIE I EN+N+ERYQIP++WPYQEARRLFKEP V+TD
Sbjct: 233 CDYCDSIRGIGGLTALKLIRQHGSIENIPENLNKERYQIPDNWPYQEARRLFKEPLVITD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E++L IKWS+PDEEGLI FLV+ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKP AN
Sbjct: 293 EKELDIKWSSPDEEGLITFLVNENGFNRDRVTKAIEKIKVAKNKSSQGRLESFFKPTANP 352
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 353 SVPIKRK 359
>gi|449435964|ref|XP_004135764.1| PREDICTED: flap endonuclease 1-like [Cucumis sativus]
Length = 377
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/302 (88%), Positives = 291/302 (96%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRADAT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A+E GNK+DIEKFSKRTVKVTKQHNDDCKRLL+LMGVPV+EAPSEAEAQCAALCK G+
Sbjct: 113 ADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFG+PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+IRGIGG TALKLIRQHGSIE+ILENIN+ERYQIP+DWPY+EAR+LFKEP V TD
Sbjct: 233 CDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EEQL IKW+ PDEEGL+ FLV+ENGFNS+RVTKA+EKIKAAKNKSSQGR+ESFFKPV N
Sbjct: 293 EEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNP 352
Query: 301 SA 302
S+
Sbjct: 353 SS 354
>gi|388498254|gb|AFK37193.1| unknown [Lotus japonicus]
Length = 366
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/306 (87%), Positives = 293/306 (95%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMFTRTIRLLE+GMKP+YVFDG+PPD+KKQELAKR SKRA+AT+DL+
Sbjct: 38 LTNEAGEVTSHLQGMFTRTIRLLESGMKPVYVFDGKPPDMKKQELAKRLSKRAEATEDLS 97
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++A NKEDIEKFSKRTVKVTKQHN+D K+LL+LMGVPVVEAPSEAEAQCAALCK+G V
Sbjct: 98 EALKADNKEDIEKFSKRTVKVTKQHNEDYKKLLRLMGVPVVEAPSEAEAQCAALCKAGMV 157
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAVASEDMDSLTFGAP+FLRHLMDPSS+K+PVMEFEVAKILEELNLTMDQFIDLCILSGC
Sbjct: 158 YAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGC 217
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+IRGIGGQTALKLIRQHGSIE ILENIN+ERYQIPEDWPYQEARRLFKEP V T +
Sbjct: 218 DYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARRLFKEPMVTTGD 277
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
++L +KWSAPDEEGLI FLV+ENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP ++S
Sbjct: 278 DELNLKWSAPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAPSSS 337
Query: 302 APIKRK 307
PIKRK
Sbjct: 338 VPIKRK 343
>gi|357441985|ref|XP_003591270.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480318|gb|AES61521.1| Flap endonuclease 1a [Medicago truncatula]
Length = 384
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/307 (87%), Positives = 289/307 (94%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAGMKP+YVFDG+PP++K QEL KR SKRA+AT L
Sbjct: 53 MLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+EA NKEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+
Sbjct: 113 TEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGAP+FLRHLMDPSS+KIPVMEF+VAKILEEL+LTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+IRGIGG TALKLIRQHGSIE ILENI++ERYQ+P+DWPYQEARRLFKEPEV TD
Sbjct: 233 CDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+E L +KWS PDEEGLI FLV+ENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP AN
Sbjct: 293 DEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANP 352
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 353 SVPIKRK 359
>gi|357441987|ref|XP_003591271.1| Flap endonuclease 1a [Medicago truncatula]
gi|355480319|gb|AES61522.1| Flap endonuclease 1a [Medicago truncatula]
Length = 369
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/307 (87%), Positives = 289/307 (94%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF RTIRLLEAGMKP+YVFDG+PP++K QEL KR SKRA+AT L
Sbjct: 38 MLTNEAGEVTSHLQGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGL 97
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+EA NKEDIEKFSKRTVKVTKQHNDDCKRLL+LMGVPVVEAPSEAEAQCAALCK+G+
Sbjct: 98 TEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGK 157
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGAP+FLRHLMDPSS+KIPVMEF+VAKILEEL+LTMDQFIDLCILSG
Sbjct: 158 VYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSG 217
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+IRGIGG TALKLIRQHGSIE ILENI++ERYQ+P+DWPYQEARRLFKEPEV TD
Sbjct: 218 CDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVSTD 277
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+E L +KWS PDEEGLI FLV+ENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP AN
Sbjct: 278 DEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANP 337
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 338 SVPIKRK 344
>gi|242091235|ref|XP_002441450.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
gi|317374865|sp|C5YUK3.1|FEN11_SORBI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|241946735|gb|EES19880.1| hypothetical protein SORBIDRAFT_09g026950 [Sorghum bicolor]
Length = 380
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/306 (83%), Positives = 286/306 (93%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KK+ELAKR+SKR DAT+DL
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKEELAKRFSKREDATNDLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVEAG+K+ +EK SKRTVKVT QHNDDCKRLL+LMGVPVVEAPSEAEA+CAALCK+ +V
Sbjct: 114 EAVEAGDKDAVEKLSKRTVKVTAQHNDDCKRLLRLMGVPVVEAPSEAEAECAALCKNDKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GC
Sbjct: 174 FAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDV 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+ PDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKPVA TS
Sbjct: 294 PEL--KWTPPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPVATTS 351
Query: 302 APIKRK 307
AP+KRK
Sbjct: 352 APLKRK 357
>gi|115465159|ref|NP_001056179.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|62510701|sp|Q9SXQ6.1|FEN11_ORYSJ RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A; AltName:
Full=OsFEN-1a
gi|4587225|dbj|BAA36171.1| FEN-1 [Oryza sativa Japonica Group]
gi|113579730|dbj|BAF18093.1| Os05g0540100 [Oryza sativa Japonica Group]
gi|222632398|gb|EEE64530.1| hypothetical protein OsJ_19381 [Oryza sativa Japonica Group]
Length = 380
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/306 (84%), Positives = 282/306 (92%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + V
Sbjct: 114 EAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGC
Sbjct: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDI 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS
Sbjct: 294 PEL--KWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTS 351
Query: 302 APIKRK 307
P+KRK
Sbjct: 352 VPLKRK 357
>gi|317374863|sp|B8AW67.1|FEN11_ORYSI RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|218197185|gb|EEC79612.1| hypothetical protein OsI_20807 [Oryza sativa Indica Group]
Length = 380
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/306 (84%), Positives = 282/306 (92%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKR DAT +L
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + V
Sbjct: 114 EAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGC
Sbjct: 174 YAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDI 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS
Sbjct: 294 PEL--KWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTS 351
Query: 302 APIKRK 307
P+KRK
Sbjct: 352 VPLKRK 357
>gi|317374910|sp|B4FHY0.1|FEN1_MAIZE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194695278|gb|ACF81723.1| unknown [Zea mays]
Length = 379
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/306 (83%), Positives = 284/306 (92%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V
Sbjct: 114 EAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GC
Sbjct: 174 FAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDI 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TS
Sbjct: 294 PEL--KWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTS 351
Query: 302 APIKRK 307
AP+KRK
Sbjct: 352 APLKRK 357
>gi|413946273|gb|AFW78922.1| flap endonuclease 1a [Zea mays]
Length = 523
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/306 (83%), Positives = 284/306 (92%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL
Sbjct: 198 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLT 257
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V
Sbjct: 258 EAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKV 317
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GC
Sbjct: 318 FAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGC 377
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 378 DYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDI 437
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TS
Sbjct: 438 PEL--KWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTS 495
Query: 302 APIKRK 307
AP+KRK
Sbjct: 496 APLKRK 501
>gi|195629924|gb|ACG36603.1| flap endonuclease 1a [Zea mays]
Length = 379
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/306 (83%), Positives = 283/306 (92%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRYSKR DAT DL
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYSKRDDATKDLT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+K+ IEK SKRTVKVT+QHN+DCKRLL+LMGVPVVEAPSEAEA+CAALC + +V
Sbjct: 114 EAVEVGDKDAIEKLSKRTVKVTRQHNEDCKRLLRLMGVPVVEAPSEAEAECAALCINDKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVASEDMDSLTFGAPR LRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GC
Sbjct: 174 FAVASEDMDSLTFGAPRXLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGGQTALKLIRQHGSIE+ILEN+N++RYQIPEDWPYQEARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGQTALKLIRQHGSIESILENLNKDRYQIPEDWPYQEARRLFKEPNVTLDI 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGLI+FLV +NGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP A TS
Sbjct: 294 PEL--KWTAPDEEGLISFLVKDNGFNEDRVTKAIEKIKSAKNKSSQGRLESFFKPTATTS 351
Query: 302 APIKRK 307
AP+KRK
Sbjct: 352 APLKRK 357
>gi|357132761|ref|XP_003567997.1| PREDICTED: flap endonuclease 1-A-like [Brachypodium distachyon]
Length = 380
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/306 (82%), Positives = 279/306 (91%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPD+KKQELAKRY+KR DAT++L
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDMKKQELAKRYAKREDATEELT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G+ + IE+FSKRTVKVTKQHNDDCKRLL+LMGVPVVEAP EAEAQCAALC +V
Sbjct: 114 KAVETGDTDAIERFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPCEAEAQCAALCIKDKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAVASEDMDSLTFGAPRF+RHLMDPSSRKIP+MEFEVAKILEEL TMDQFIDLCIL GC
Sbjct: 174 YAVASEDMDSLTFGAPRFVRHLMDPSSRKIPIMEFEVAKILEELEFTMDQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIGG TALKLIRQHGSIE ILENIN+++YQIPEDWPY+EARRLFKEP V D
Sbjct: 234 DYCDSIKGIGGLTALKLIRQHGSIEGILENINKDKYQIPEDWPYEEARRLFKEPNVTLDL 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+L KW+APDEEGL+NFLV ENGFN DRVTKAIEKIK+AKNKSSQGRLESFFKP +TS
Sbjct: 294 PEL--KWTAPDEEGLVNFLVKENGFNQDRVTKAIEKIKSAKNKSSQGRLESFFKPTVSTS 351
Query: 302 APIKRK 307
P+KRK
Sbjct: 352 VPLKRK 357
>gi|55733906|gb|AAV59413.1| putative flap endonuclease 1 [Oryza sativa Japonica Group]
Length = 380
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/309 (83%), Positives = 279/309 (90%), Gaps = 8/309 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR---YSKRADATD 58
LTNEAGEVTSHLQGMF RTIRLLEAG+KP+YVFDG+PPDLKKQELAKR YSKR DAT
Sbjct: 54 LTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRHDMYSKREDATK 113
Query: 59 DLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
+L EAVE G+K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC +
Sbjct: 114 ELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCIN 173
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 178
VYAVASEDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCIL
Sbjct: 174 DMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCIL 233
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
SGCDYCDSI+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V
Sbjct: 234 SGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVT 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
D +L KW+APDEEGL+ FLV ENGFN DR AIEKIK AKNKSSQGRLESFFKPV
Sbjct: 294 LDIPEL--KWNAPDEEGLVEFLVKENGFNQDR---AIEKIKFAKNKSSQGRLESFFKPVV 348
Query: 299 NTSAPIKRK 307
+TS P+KRK
Sbjct: 349 STSVPLKRK 357
>gi|3047083|gb|AAC13596.1| similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana]
Length = 362
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/263 (87%), Positives = 251/263 (95%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HLQGMF RTIRLLEAG+KP+YVFDG+PP+LK+QELAKRYSKRADAT DL A+EAGNKED
Sbjct: 97 HLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLTGAIEAGNKED 156
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
IEK+SKRTVKVTKQHNDDCKRLL+LMGVPVVEA SEAEAQCAALCKSG+VY VASEDMDS
Sbjct: 157 IEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDS 216
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 191
LTFGAP+FLRHLMDPSSRKIPVMEFEVAKILEEL LTMDQFIDLCILSGCDYCDSIRGIG
Sbjct: 217 LTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIG 276
Query: 192 GQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAP 251
GQTALKLIRQHGSIETILEN+N+ERYQIPE+WPY EAR+LFKEP+V+TDEEQL IKW++P
Sbjct: 277 GQTALKLIRQHGSIETILENLNKERYQIPEEWPYNEARKLFKEPDVITDEEQLDIKWTSP 336
Query: 252 DEEGLINFLVSENGFNSDRVTKA 274
DEEG++ FLV+ENGFN DRVTK
Sbjct: 337 DEEGIVQFLVNENGFNIDRVTKV 359
>gi|343172070|gb|AEL98739.1| endonuclease, partial [Silene latifolia]
gi|343172072|gb|AEL98740.1| endonuclease, partial [Silene latifolia]
Length = 325
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/273 (84%), Positives = 258/273 (94%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRADAT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+ A+E G+KE IEKFSKRTVKVTKQHN+DCK+LL LMGVPVVEAPSEAEAQCAALCK+G+
Sbjct: 113 SAAIEEGDKEGIEKFSKRTVKVTKQHNEDCKKLLGLMGVPVVEAPSEAEAQCAALCKNGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGA +FLRHLMDPSS+KIPVMEF++AK+LEELNLTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDSLTFGACKFLRHLMDPSSKKIPVMEFDMAKVLEELNLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+I+GIGG TALKLIRQHGSIETILEN+N+ERYQI +DWPYQEARRLFKEP V +
Sbjct: 233 CDYCDNIKGIGGMTALKLIRQHGSIETILENLNKERYQIADDWPYQEARRLFKEPHVFPE 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 273
E+ ++KWS PDEEGL+NFLV ENGFN DRVTK
Sbjct: 293 NEEPELKWSPPDEEGLVNFLVKENGFNIDRVTK 325
>gi|302796239|ref|XP_002979882.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
gi|302813529|ref|XP_002988450.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300143852|gb|EFJ10540.1| hypothetical protein SELMODRAFT_128023 [Selaginella moellendorffii]
gi|300152642|gb|EFJ19284.1| hypothetical protein SELMODRAFT_111465 [Selaginella moellendorffii]
Length = 377
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/298 (76%), Positives = 270/298 (90%), Gaps = 1/298 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGE+TSHLQGMFTRT+RLLE+GMKP+YVFDG+PP+LKK EL KR ++R +AT+ L
Sbjct: 50 MLTNEAGEITSHLQGMFTRTVRLLESGMKPVYVFDGKPPELKKAELVKRGARREEATEGL 109
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+E G DIEK+SKRTVKVTKQHN+DC++LL+LMG+PV+EAP EAEA+CAALCK+ +
Sbjct: 110 TEAIEKGEVADIEKYSKRTVKVTKQHNEDCQKLLRLMGIPVIEAPCEAEAECAALCKADK 169
Query: 121 V-YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
V YAVASEDMDSLTFG+PRFLRHLM+P+SRKIPVMEF+++ L+ELNL+MDQFIDLCIL
Sbjct: 170 VVYAVASEDMDSLTFGSPRFLRHLMEPASRKIPVMEFQISTALQELNLSMDQFIDLCILC 229
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
GCDYCD+IRGIG QTALKLIRQH ++E +LEN+N++RYQIPE WPYQEARRLFKEP V+
Sbjct: 230 GCDYCDTIRGIGPQTALKLIRQHSTLEAVLENLNKDRYQIPESWPYQEARRLFKEPIVLP 289
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
DEE ++KW+APDEEGL FLV ENGFN DRVTKAIE+IK+AKNKSSQGR+ESFFKPV
Sbjct: 290 DEELPELKWNAPDEEGLKKFLVEENGFNIDRVTKAIERIKSAKNKSSQGRMESFFKPV 347
>gi|255543058|ref|XP_002512592.1| flap endonuclease-1, putative [Ricinus communis]
gi|223548553|gb|EEF50044.1| flap endonuclease-1, putative [Ricinus communis]
Length = 345
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/307 (77%), Positives = 259/307 (84%), Gaps = 38/307 (12%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTS YS+RADAT++L
Sbjct: 53 MLTNEAGEVTS--------------------------------------YSRRADATEEL 74
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A AVE GNKEDIEKFSKRTVKVTKQHN+DCKRLL+LMGVPV+EAPSEAEA+CAALCKSG+
Sbjct: 75 AAAVETGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAECAALCKSGK 134
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGAPRFLRHLMDPSSRK+PVMEFE +KILEELNLTMDQFIDLCILSG
Sbjct: 135 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFETSKILEELNLTMDQFIDLCILSG 194
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGG TALKLIRQHGSIE ILEN+N+ERYQIPEDWPYQEARRLFKEP V+ D
Sbjct: 195 CDYCDSIRGIGGMTALKLIRQHGSIENILENMNKERYQIPEDWPYQEARRLFKEPLVLAD 254
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
EE+ ++KW+APD+EGLI FLV+ENGFN+DRVTKAIEKIKAAKNKSSQGRLESFFKPVAN+
Sbjct: 255 EEEPELKWTAPDQEGLITFLVNENGFNNDRVTKAIEKIKAAKNKSSQGRLESFFKPVANS 314
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 315 SIPIKRK 321
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/307 (77%), Positives = 257/307 (83%), Gaps = 39/307 (12%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTS YVFDG+PPDLKKQELAKR+S+RADAT+DL
Sbjct: 89 MLTNEAGEVTS--------------------YVFDGKPPDLKKQELAKRFSRRADATEDL 128
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA+E GNKE+IEKFSKRTVKVTKQHN+DCK+LL+LMGVPV+EAPSEAEAQCAALCKSG+
Sbjct: 129 TEALETGNKEEIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKSGK 188
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFGA +FLRHLMDPSSRKIPVMEF++ KILEELNLTMDQFIDLCILSG
Sbjct: 189 VYAVASEDMDSLTFGASKFLRHLMDPSSRKIPVMEFDITKILEELNLTMDQFIDLCILSG 248
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIGGQTALKLIRQHGSIE ILENINRERYQIP+DWPYQEAR LFKEP+V +D
Sbjct: 249 CDYCDSIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARCLFKEPQVFSD 308
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+EQL IKWSAPDEE AIEKIK AKNKSSQGRLESFFKPV ++
Sbjct: 309 DEQLDIKWSAPDEE-------------------AIEKIKTAKNKSSQGRLESFFKPVVSS 349
Query: 301 SAPIKRK 307
S PIKRK
Sbjct: 350 SIPIKRK 356
>gi|168014475|ref|XP_001759777.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374864|sp|A9S0B8.1|FEN11_PHYPA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|162688907|gb|EDQ75281.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 215/294 (73%), Positives = 263/294 (89%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGEVTSHLQGMF RTIR+LEAG+KP+YVFDGQPPDLKK+ELAKR+++R DA +DL
Sbjct: 53 LLTNDAGEVTSHLQGMFNRTIRVLEAGLKPVYVFDGQPPDLKKRELAKRFARREDAAEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E GN+ D+EK+SK+TVKVTKQHN+DC++LL+LMGVPVVEAPSEAEA+CA+LCK+ +
Sbjct: 113 VTAKETGNEADVEKYSKKTVKVTKQHNEDCRKLLRLMGVPVVEAPSEAEAECASLCKAEK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+AVASEDMDSLT+G+ RFLRHLM+P+SRK+PV+EF++AK+LE L L MDQF+DLCIL G
Sbjct: 173 VFAVASEDMDSLTYGSTRFLRHLMEPTSRKLPVLEFDIAKVLEGLGLNMDQFVDLCILCG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+IRGIG QTALK+IRQHGS+E +LEN+N++RYQ+P+ WPYQEARRLFKEP V
Sbjct: 233 CDYCDTIRGIGPQTALKMIRQHGSLEIVLENLNKDRYQVPDPWPYQEARRLFKEPLVTPP 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E+ + KW+APD EGL LV ENGFN+DRV KAIEK+K AKNK+SQGRLESFF
Sbjct: 293 EKVPEFKWTAPDTEGLRQLLVEENGFNNDRVMKAIEKLKVAKNKASQGRLESFF 346
>gi|168066677|ref|XP_001785260.1| predicted protein [Physcomitrella patens subsp. patens]
gi|317374868|sp|A9U328.1|FEN12_PHYPA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|162663130|gb|EDQ49912.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 349
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/290 (72%), Positives = 252/290 (86%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGEVTSHL GMF RTIR+LEAG+KP+YVFDG+PP++K ELAKR ++R +A + L
Sbjct: 53 MLTNDAGEVTSHLIGMFNRTIRVLEAGLKPVYVFDGKPPEMKGGELAKRLARREEAVESL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A A GN+ D+EK+SKRTVKVTKQHN+DC++LL+LMGVPVVEAPSEAEA+CA+LCK+G+
Sbjct: 113 ATAKLEGNEADMEKYSKRTVKVTKQHNEDCRKLLRLMGVPVVEAPSEAEAECASLCKTGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMDSLTFG+ RFLRHLM+P SRK+PVMEF++ K+LE L+LTMDQF+DLCIL G
Sbjct: 173 VYAVASEDMDSLTFGSTRFLRHLMEPVSRKLPVMEFDMNKVLEGLSLTMDQFVDLCILCG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDY D+IRGIG QTALKLIRQHGS+E ILEN+N++RYQIP+ WPY+EARRLFKEP V
Sbjct: 233 CDYIDTIRGIGAQTALKLIRQHGSLEKILENLNKDRYQIPDPWPYEEARRLFKEPLVTQA 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
E+ KW+APD EGLI FLV ENGFN DRV AI+KI+ AKNKSSQGR
Sbjct: 293 EDVPDFKWTAPDAEGLIKFLVEENGFNHDRVQTAIKKIQLAKNKSSQGRF 342
>gi|357122637|ref|XP_003563021.1| PREDICTED: flap endonuclease 1-B-like [Brachypodium distachyon]
Length = 413
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/307 (67%), Positives = 256/307 (83%), Gaps = 4/307 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGEVTSHLQGM RT+RLLEAG+KP++VFDG+PPDLKK+ELAKR +R DA++DL
Sbjct: 53 VLTNEAGEVTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKRELAKRSLRRDDASEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G+++ IEKFSKRTVK+TK+HNDDCK+LL+LMGVPVVEAP EAEAQCA+LCK+ +
Sbjct: 113 NRAIEVGDEDSIEKFSKRTVKITKKHNDDCKKLLRLMGVPVVEAPGEAEAQCASLCKNHK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
YAVASEDMDSLTFG+ RFLRH+ D S ++ PV EFEV K+LEEL LTMDQFIDLCILSG
Sbjct: 173 AYAVASEDMDSLTFGSLRFLRHITDLSFKRSPVTEFEVPKVLEELGLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC++I+GIGGQ ALKLIRQHG IE +++N+N R+ +PEDWPYQE R LFKEP V T+
Sbjct: 233 CDYCENIKGIGGQRALKLIRQHGCIEEVVQNLN-NRFTVPEDWPYQEVRTLFKEPNVCTE 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
Q W++ D+EG++NFL EN F+SDRV KA++KIKAA+++ S GR++ PVAN
Sbjct: 292 IPDFQ--WTSVDKEGIVNFLAIENSFSSDRVEKAVQKIKAARDRYSPGRVK-LLTPVANL 348
Query: 301 SAPIKRK 307
S I +K
Sbjct: 349 SGSITKK 355
>gi|115456427|ref|NP_001051814.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B; AltName:
Full=OsFEN-1b
gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica
Group]
gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group]
gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group]
gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
Length = 412
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/302 (68%), Positives = 250/302 (82%), Gaps = 3/302 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGEVTSHLQGM RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR KR +++DL
Sbjct: 53 VLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G+++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +
Sbjct: 113 NRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A+ASEDMDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSG
Sbjct: 173 VFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC++IRGIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
W+ PDEEGLINFL +EN F+ DRV K++EKIKAA +K S GR PVAN
Sbjct: 293 IPDFL--WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR-GKLLAPVANL 349
Query: 301 SA 302
+
Sbjct: 350 TG 351
>gi|29467052|dbj|BAC66965.1| flap endonuclease-1b [Oryza sativa Japonica Group]
gi|37496995|dbj|BAC98428.1| flap endonuclease-1b [Oryza sativa Japonica Group]
Length = 412
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/302 (68%), Positives = 250/302 (82%), Gaps = 3/302 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGEVTSHLQGM RT+R+LEAG+KP++VFDG+PPD+KK+ELAKR KR +++DL
Sbjct: 53 VLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G+++ IEKFSKRTVKVTK+HN+DCKRLL LMGVPVV+AP EAEAQCAALC++ +
Sbjct: 113 NRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCENHK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A+ASEDMDSLTFGA RFLRHL D S ++ PV EFEV+K+LEEL LTMDQFIDLCILSG
Sbjct: 173 VFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELGLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC++IRGIGGQ ALKLIRQHG IE +++N+++ RY +PEDWPYQE R LFKEP V TD
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWPYQEVRALFKEPNVCTD 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
W+ PDEEGLINFL +EN F+ DRV K++EKIKAA +K S GR PVAN
Sbjct: 293 IPDFL--WTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFSLGR-GKLLAPVANL 349
Query: 301 SA 302
+
Sbjct: 350 TG 351
>gi|413932541|gb|AFW67092.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 411
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/299 (68%), Positives = 247/299 (82%), Gaps = 3/299 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGE+TSHLQGM RTIR+LEAG+KP++VFDG+PP++KK+ELAKR KR DA DL
Sbjct: 53 LLTNEAGEITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G++ IEKFSKRTVKVT +HNDDCKRLL+LMGVPVVEAP EAEAQCAALC++ Q
Sbjct: 113 NRAMEIGDENAIEKFSKRTVKVTGRHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQ 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMD+LTFGA RFLRHL D +K PV EF+V+K+LEEL LTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC++IRGIGGQ ALKLIRQHG IE +L+N+N+ R+ +PEDWPYQE R LFKEP V
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTRFSVPEDWPYQEVRTLFKEPNVCAG 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
W++PD EGL++FL +EN F+ DRVTKA+EKIK A+++ S GR++ PVA+
Sbjct: 293 IPDFT--WTSPDPEGLMDFLSTENSFSPDRVTKAVEKIKVARDRYSPGRMKH-LTPVAS 348
>gi|149390675|gb|ABR25355.1| endonuclease putative [Oryza sativa Indica Group]
Length = 262
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/241 (84%), Positives = 221/241 (91%), Gaps = 2/241 (0%)
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G K+ IEKFSKRTVKVTKQHN++CKRLL+LMGVPVVEAP EAEA+CAALC + VYAVAS
Sbjct: 1 GVKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVAS 60
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMDSLTFGAPRFLRHLMDPSS+KIPVMEFEVAK+LEEL LTMDQFIDLCILSGCDYCDS
Sbjct: 61 EDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDS 120
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIGGQTALKLIRQHGSIE+ILENIN++RYQIPEDWPYQEARRLFKEP V D +L
Sbjct: 121 IKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPEL-- 178
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 306
KW+APDEEGL+ FLV ENGFN DRVTKAIEKIK AKNKSSQGRLESFFKPV +TS P+KR
Sbjct: 179 KWNAPDEEGLVQFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPVVSTSVPLKR 238
Query: 307 K 307
K
Sbjct: 239 K 239
>gi|317374937|sp|C5WU23.2|FEN12_SORBI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
Length = 428
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/326 (63%), Positives = 250/326 (76%), Gaps = 30/326 (9%)
Query: 1 MLTNEAGEVT---------------------------SHLQGMFTRTIRLLEAGMKPIYV 33
+LTNEAGEVT SHLQGM RT+R+LEAG+KP++V
Sbjct: 53 LLTNEAGEVTRQETSLALPVSDHCIPAYLTFHLCELCSHLQGMLNRTVRMLEAGIKPVFV 112
Query: 34 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 93
FDG+PP++KK+ELAKR KR DAT DL A+E G+++ +EKFSKRTVKVT++HNDDCKRL
Sbjct: 113 FDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIGDEDAVEKFSKRTVKVTRKHNDDCKRL 172
Query: 94 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 153
L+LMGVPVVEAP EAEAQCAALC++ QVYAVASEDMDSLTFGA RFLRHL D +K PV
Sbjct: 173 LRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPV 232
Query: 154 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213
EF+V+K+LEEL LTMDQFIDLCILSGCDYC++I+GIGGQ ALKLIRQHG IE +L+N+N
Sbjct: 233 TEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLN 292
Query: 214 RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 273
+ R+ +PEDWPYQE R LFKEP V W++PD EGL+ FL +EN F+ DRVTK
Sbjct: 293 QTRFSVPEDWPYQEVRTLFKEPNVSAGISDFT--WTSPDTEGLMGFLSTENSFSPDRVTK 350
Query: 274 AIEKIKAAKNKSSQGRLESFFKPVAN 299
A+EKIKAA+++ S GRL+ PVA+
Sbjct: 351 AVEKIKAARDRYSPGRLK-HLTPVAS 375
>gi|242032391|ref|XP_002463590.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
gi|241917444|gb|EER90588.1| hypothetical protein SORBIDRAFT_01g002580 [Sorghum bicolor]
Length = 477
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/326 (63%), Positives = 250/326 (76%), Gaps = 30/326 (9%)
Query: 1 MLTNEAGEVT---------------------------SHLQGMFTRTIRLLEAGMKPIYV 33
+LTNEAGEVT SHLQGM RT+R+LEAG+KP++V
Sbjct: 102 LLTNEAGEVTRQETSLALPVSDHCIPAYLTFHLCELCSHLQGMLNRTVRMLEAGIKPVFV 161
Query: 34 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 93
FDG+PP++KK+ELAKR KR DAT DL A+E G+++ +EKFSKRTVKVT++HNDDCKRL
Sbjct: 162 FDGEPPEMKKKELAKRSLKRDDATKDLNRAIEIGDEDAVEKFSKRTVKVTRKHNDDCKRL 221
Query: 94 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 153
L+LMGVPVVEAP EAEAQCAALC++ QVYAVASEDMDSLTFGA RFLRHL D +K PV
Sbjct: 222 LRLMGVPVVEAPGEAEAQCAALCENHQVYAVASEDMDSLTFGARRFLRHLTDLGYKKSPV 281
Query: 154 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213
EF+V+K+LEEL LTMDQFIDLCILSGCDYC++I+GIGGQ ALKLIRQHG IE +L+N+N
Sbjct: 282 TEFDVSKVLEELGLTMDQFIDLCILSGCDYCENIKGIGGQRALKLIRQHGCIEEVLQNLN 341
Query: 214 RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 273
+ R+ +PEDWPYQE R LFKEP V W++PD EGL+ FL +EN F+ DRVTK
Sbjct: 342 QTRFSVPEDWPYQEVRTLFKEPNVSAGISDFT--WTSPDTEGLMGFLSTENSFSPDRVTK 399
Query: 274 AIEKIKAAKNKSSQGRLESFFKPVAN 299
A+EKIKAA+++ S GRL+ PVA+
Sbjct: 400 AVEKIKAARDRYSPGRLKH-LTPVAS 424
>gi|307102466|gb|EFN50740.1| hypothetical protein CHLNCDRAFT_37697 [Chlorella variabilis]
Length = 389
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/307 (62%), Positives = 247/307 (80%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLT+E GEVTSHLQGMF RT+R+LEAGMKP++VF+G+ P+LK++ELAKR ++R DA +L
Sbjct: 53 MLTSETGEVTSHLQGMFFRTVRMLEAGMKPVFVFEGKAPELKREELAKRSNRREDANTEL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A EAGN ED+EK+SKRTV+VT++HN++CKRLL+LMGVPV+EAPSEAEAQCA LCK G
Sbjct: 113 EAAKEAGNAEDVEKYSKRTVRVTREHNEECKRLLRLMGVPVLEAPSEAEAQCAQLCKDGL 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY +++EDMDSLTFG P+ +RHLM PSS+K MEF+ +L+EL LT DQFIDLCIL G
Sbjct: 173 VYGISTEDMDSLTFGTPKLIRHLMAPSSQKPLAMEFDHELVLKELELTEDQFIDLCILCG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDY I GIG AL LI++HGSIE +L ++ ++YQIPE +PYQEARRLFKEP+VV
Sbjct: 233 CDYTAKISGIGAVRALSLIKKHGSIEGVLAALDSKKYQIPEPFPYQEARRLFKEPDVVKG 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
++ Q+KW++PD EGLI+FLV E F DR+ KA+E+I AAK K+SQGRLESFF P
Sbjct: 293 DQIPQLKWTSPDTEGLIDFLVKEKTFAEDRIRKAVERINAAKGKASQGRLESFFGPAKVV 352
Query: 301 SAPIKRK 307
S+ + ++
Sbjct: 353 SSTMGKR 359
>gi|384245741|gb|EIE19234.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 384
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/307 (61%), Positives = 246/307 (80%), Gaps = 1/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E+G+VTSHLQGMF RT ++LE GMKP+YVFDG+PP LKK+EL++R +R DATD L
Sbjct: 54 LTSESGDVTSHLQGMFFRTAKMLEVGMKPVYVFDGKPPALKKEELSRRVERRGDATDLLT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G DIEK+SKRTV+VT QHN++C+RLL+LMGVPVVEAPSEAEAQCA +CK G V
Sbjct: 114 EAKETGADADIEKYSKRTVRVTPQHNEECRRLLRLMGVPVVEAPSEAEAQCAQMCKEGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y +ASEDMDSLTF P+ +R+LM P ++ +P+ E++ K+LE LNLT DQF+DLCIL GC
Sbjct: 174 YGIASEDMDSLTFATPKLIRNLMKPQTQNVPINEYDYDKVLEGLNLTSDQFVDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +I+GIGG TALKLI++H +E +L ++ RY+IP+ +P++EARRLFKEP+V+ +
Sbjct: 234 DYCGTIKGIGGVTALKLIQKHKRLEDVLASMEGGRYEIPDPFPFEEARRLFKEPDVLKGD 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA-NT 300
Q+KW+ DEEGL+ FLV + FN DRV KA++++ AAK+KS+QGRLESFF PV+ T
Sbjct: 294 SMPQLKWTTADEEGLVQFLVGDKSFNEDRVRKAVQRVNAAKSKSTQGRLESFFGPVSIKT 353
Query: 301 SAPIKRK 307
S KRK
Sbjct: 354 SDTGKRK 360
>gi|302843818|ref|XP_002953450.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
gi|300261209|gb|EFJ45423.1| nuclease, Rad2 family [Volvox carteri f. nagariensis]
Length = 397
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/309 (59%), Positives = 241/309 (77%), Gaps = 2/309 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAG++TSHLQGMF RT R+LEAG+KP+YVFDG+PP LK+ +LA R +RADA + L
Sbjct: 53 LLTNEAGDITSHLQGMFFRTARMLEAGIKPVYVFDGKPPQLKQDQLAMRSERRADANEAL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG+ E +EK+SKR+V+VTK+HN+DCKRLL+LMGVPVVEAPSEAEAQCA + K+G
Sbjct: 113 EKAKEAGDAEAVEKYSKRSVRVTKEHNEDCKRLLRLMGVPVVEAPSEAEAQCAEMAKAGL 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY +A+EDMD+LTFGAPR +RHLM PSS +PV E + A L+EL L DQFID+CIL G
Sbjct: 173 VYGLATEDMDALTFGAPRVIRHLMAPSSSNVPVQEIDRAVALQELGLDDDQFIDMCILMG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +IRGIG AL+LI++HGSIE ILE +++ ++ +PE +PY+E+ FK PEV
Sbjct: 233 CDYCGTIRGIGAVRALQLIKKHGSIEAILEELDKAKFPVPEPFPYKESHEFFKNPEVTPA 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVA 298
E Q+KWS+PDEEGL+ FLV+E F+ RV A+ +IK K K++QGR+++FF P +
Sbjct: 293 AELPQLKWSSPDEEGLVQFLVNEKNFSEQRVRAAVSRIKQHKGKANQGRMDTFFTALPKS 352
Query: 299 NTSAPIKRK 307
NT + K K
Sbjct: 353 NTDSAAKTK 361
>gi|159475218|ref|XP_001695720.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
gi|317374883|sp|A8J2Z9.1|FEN1_CHLRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158275731|gb|EDP01507.1| nuclease, Rad2 family [Chlamydomonas reinhardtii]
Length = 396
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/294 (61%), Positives = 236/294 (80%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGE+TSHLQGMF RT ++LEAG+KP+YVFDG+PP LK+ +LA+R +RADA + L
Sbjct: 53 LLTNEAGEITSHLQGMFFRTAKMLEAGIKPVYVFDGKPPQLKQDQLAQRTERRADANEAL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG++E IEK+SKR+V+VT++HND+CKRLL+LMGVPVVEAP+EAEAQCA + KSG
Sbjct: 113 EKAKEAGDQEAIEKYSKRSVRVTREHNDECKRLLRLMGVPVVEAPTEAEAQCAEMAKSGL 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY +A+EDMD+LTFGAPR +RHLM PSS+ +PV EF+ L EL LT DQFIDLCIL G
Sbjct: 173 VYGLATEDMDALTFGAPRVIRHLMAPSSQNVPVQEFDREVALRELELTDDQFIDLCILMG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +IRGIG AL++I++HGSIE +L+ ++ +Y +PE +P++E+ FK PEV
Sbjct: 233 CDYCGTIRGIGAVRALQMIKKHGSIEGMLKELDPAKYPVPEPFPHKESHEFFKNPEVTPS 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +KW+APDEEGL+ FLV+E FN RV A+ +IKA K K++QGRLESFF
Sbjct: 293 AEIPPLKWTAPDEEGLVQFLVNEKQFNEQRVRNAVGRIKANKTKANQGRLESFF 346
>gi|328773336|gb|EGF83373.1| hypothetical protein BATDEDRAFT_22008 [Batrachochytrium
dendrobatidis JAM81]
Length = 388
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 235/310 (75%), Gaps = 4/310 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GM RTIR++E G+KP YVFDG+PP LK EL KR +RA+A +
Sbjct: 54 LTNEAGETTSHLMGMLYRTIRMVENGIKPAYVFDGKPPTLKSGELQKRGERRAEAQKEAD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ E+ +FS+RTVKVTK+ N +C+RLLKLMG+P+VEAP EAEAQCAAL K+G+V
Sbjct: 114 TALETGDTENFNRFSRRTVKVTKEQNQECRRLLKLMGIPIVEAPCEAEAQCAALAKAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA SEDMD+LTFGAP LRHL ++KIP+ EF K+LE LN + D+FIDLCIL GC
Sbjct: 174 YAAGSEDMDTLTFGAPVLLRHLTFSEAKKIPISEFNTQKVLEGLNFSHDEFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSIRGIG A++L+++H +IE I+++I++ +Y++PE+WP++EAR+LFKEP+V+ D
Sbjct: 234 DYCDSIRGIGPHRAVQLMKEHRTIENIIKSIDKTKYKVPENWPFKEARQLFKEPDVL-DP 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---A 298
+++ W+ PDE GL+ FLV+E GF+ DRV KA E++ ++QGRL+ FFK + A
Sbjct: 293 ATVELNWTKPDEAGLLQFLVTEKGFSEDRVKKAAERLSKLMGTATQGRLDGFFKAIPRPA 352
Query: 299 NTSAPIKRKV 308
+ +KRK
Sbjct: 353 SDPLTLKRKA 362
>gi|255076159|ref|XP_002501754.1| flap endonuclease-1 [Micromonas sp. RCC299]
gi|317374911|sp|C1E3X9.1|FEN1_MICSR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226517018|gb|ACO63012.1| flap endonuclease-1 [Micromonas sp. RCC299]
Length = 384
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/306 (56%), Positives = 233/306 (76%), Gaps = 1/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGMFTRT+R+L+AG+KP+YVFDG+PP +K ELAKR KR A L
Sbjct: 54 LTNEAGEVTSHLQGMFTRTLRMLKAGIKPVYVFDGKPPTMKGGELAKRKDKREAAESALE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG++E+IEK SKRTV+V+K H+++ +L + +G+PV EAP EAEA CAALCK+G V
Sbjct: 114 KAKEAGDQEEIEKLSKRTVRVSKVHSEEVMKLARFLGLPVFEAPCEAEATCAALCKAGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P+ R+LM PSS++ P++EF+ K+L L LT DQFID+CIL GC
Sbjct: 174 YAAASEDMDTLCFSTPKLARNLMAPSSQEKPILEFDFDKLLAGLELTWDQFIDVCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG ALK I+Q+G+IE +LE++++E+Y +P+DWPY+EAR LFK PEVV
Sbjct: 234 DYCDSIKGIGPVNALKYIKQYGNIEGLLEHLDKEKYPVPDDWPYKEARVLFKNPEVV-QT 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ L +KW+APDEE ++ FL E FN DR+ K + +K A+++ Q RLE+FF S
Sbjct: 293 DGLTLKWTAPDEEAVVAFLCGEKSFNEDRIRKQLADLKKARSQGGQNRLETFFGAATVKS 352
Query: 302 APIKRK 307
+ + ++
Sbjct: 353 STVGKR 358
>gi|58390636|ref|XP_317855.2| AGAP011448-PA [Anopheles gambiae str. PEST]
gi|74802123|sp|Q7Q323.2|FEN1_ANOGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55237026|gb|EAA13029.2| AGAP011448-PA [Anopheles gambiae str. PEST]
Length = 383
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/307 (58%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRLLE G+KP+YVFDG+PPDLK EL KR +R +A L
Sbjct: 53 LTSVDGETTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELNKRAERREEAQKALD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG EDIEKF++R VKVTK H ++ K LL+LMGVP VEAP EAEAQCAAL ++G+V
Sbjct: 113 KATEAGATEDIEKFNRRLVKVTKHHANEAKELLRLMGVPYVEAPCEAEAQCAALVRAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV EF K+L+ LT D+FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSNILLRHLTFSEARKMPVQEFAYEKVLKGFELTQDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+IRGIG + A++LI +H SIE ILE+++R++Y +PE W Y++AR+LFKEPE V D
Sbjct: 233 DYCDTIRGIGPKKAIELINKHRSIEKILEHLDRQKYIVPEGWNYEQARKLFKEPE-VQDA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +++KWS PDEEGL+ FL + FN DR+ +KI KN ++QGRL+SFFK + +T
Sbjct: 292 DTIELKWSEPDEEGLVKFLCGDRQFNEDRIRSGAKKILKTKNTATQGRLDSFFKVLPSTG 351
Query: 302 APIKRKV 308
P KRKV
Sbjct: 352 TP-KRKV 357
>gi|82187497|sp|Q6TNU4.1|FEN1A_DANRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|37362214|gb|AAQ91235.1| flap structure-specific endonuclease 1 [Danio rerio]
gi|47940409|gb|AAH71488.1| Fen1 protein [Danio rerio]
Length = 380
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 230/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG +E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG LRHL ++K+P+ EF ++IL+++ LT QFIDLCIL G
Sbjct: 172 VYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF EPEVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHPAPEDWLYKEARGLFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KW+ PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL++FF +
Sbjct: 291 GTSVDLKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSI 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|198417766|ref|XP_002129714.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 380
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/306 (55%), Positives = 234/306 (76%), Gaps = 1/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GEVTSH+ G+F RTIRLL G+KP++VFDG+PP +K ELAKR +R A +LA
Sbjct: 53 LTNEDGEVTSHIAGLFYRTIRLLGNGIKPVFVFDGKPPQMKSGELAKRAERREQAEKELA 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E+G D+EK+S+R VKVT++H DDCK+LL+LMG+PVVEAP+EAEAQCA+L KSG+V
Sbjct: 113 KAQESGEAADVEKYSRRLVKVTREHMDDCKKLLRLMGIPVVEAPTEAEAQCASLVKSGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTF + R LRHL +RK+P+ EF K+LEE+ +T +QF+DLCIL GC
Sbjct: 173 YATATEDMDALTFHSSRLLRHLTFSEARKMPIQEFVYEKVLEEMEMTHEQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+ IRG+G + A LI+Q+ SI+ IL+NI+ ++Y +P+ W Y++AR+LF P+V E
Sbjct: 233 DYCEHIRGVGPKRAYDLIKQYRSIDEILKNIDLKKYTVPDGWVYKDARQLFLAPDVAASE 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +++KW+ PDEEG++ F+V E GFN DRV I+KI + KS+QGRL+ FFK + +T
Sbjct: 293 D-VELKWNDPDEEGIVKFMVEEKGFNEDRVRSGIKKILQNRQKSTQGRLDDFFKVLPSTP 351
Query: 302 APIKRK 307
KRK
Sbjct: 352 KTKKRK 357
>gi|327278874|ref|XP_003224185.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Anolis
carolinensis]
Length = 515
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/307 (54%), Positives = 236/307 (76%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R +A L
Sbjct: 185 MLQNEEGETTSHLMGMFYRTIRMVENGLKPVYVFDGKPPQLKSGELAKRIERRTEAEKQL 244
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG +E++EKFSKR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+ +
Sbjct: 245 QEAKEAGEEENVEKFSKRLVKVTKQHNEECKKLLTLMGIPYVDAPGEAEASCAALVKANK 304
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL++L+LT ++F+DLCIL G
Sbjct: 305 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQDLSLTQEEFVDLCILLG 364
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC+SIRGIG + A++LI+QH SIE I++ I+ ++Y +PE+W ++EA++LF EPEV+ D
Sbjct: 365 CDYCESIRGIGPKRAVELIKQHKSIEKIIQQIDTKKYSLPENWLHKEAQQLFLEPEVI-D 423
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+NF+ E FN +R+ ++++ ++ S+QGRL+ FFK + +
Sbjct: 424 AEAVELKWSEPNEEELVNFMCGEKQFNEERIRNGVKRLNKSRQGSTQGRLDDFFK-ITGS 482
Query: 301 SAPIKRK 307
KRK
Sbjct: 483 ITSAKRK 489
>gi|157169412|ref|XP_001651504.1| flap endonuclease-1 [Aedes aegypti]
gi|122094730|sp|Q178M1.1|FEN1_AEDAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|108878396|gb|EAT42621.1| AAEL005870-PA [Aedes aegypti]
Length = 380
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/307 (59%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRLLE G+KP+YVFDG+PPDLK EL KR KR +A L
Sbjct: 53 LTSVDGETTSHLMGTFYRTIRLLENGIKPVYVFDGKPPDLKSGELTKRAEKREEAQKALD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG EDI+KF++R VKVTKQH+++ K LLKLMGVP V+AP EAEAQCAAL K G+V
Sbjct: 113 KATEAGVTEDIDKFNRRLVKVTKQHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV EF KIL+ L LT D+FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSNILLRHLTFSEARKMPVQEFNYDKILQGLELTRDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSIRGIG + A++LI +H +IE ILEN++ ++Y +PE+W YQ+AR LFKEPEV E
Sbjct: 233 DYCDSIRGIGPKKAVELINKHRTIEKILENLDTKKYVVPENWNYQQARVLFKEPEVANPE 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E +++KW PDEEGL+ +L + FN DR+ +KI K+ ++QGRL+SFFK + +T
Sbjct: 293 E-VELKWGEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKSTATQGRLDSFFKVLPSTP 351
Query: 302 APIKRKV 308
P KRK+
Sbjct: 352 NP-KRKI 357
>gi|49619155|gb|AAT68162.1| flap structure specific endonuclease 1 [Danio rerio]
Length = 380
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/307 (57%), Positives = 230/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG +E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDM LTFG LRHL ++K+P+ EF ++IL+++ LT QFIDLCIL G
Sbjct: 172 VYATATEDMAGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+QHGSIE ILENI+ +++ PEDW Y+EAR LF EPEVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDPNKHRAPEDWLYKEARGLFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KW+ PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL++FF +
Sbjct: 291 GTSVDLKWNEPDEDGLIQFMCAEKQFSEDRIRNGCKKITKSRQGSTQGRLDTFFTVTGSI 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|405953608|gb|EKC21238.1| Flap endonuclease 1-A [Crassostrea gigas]
Length = 376
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/290 (57%), Positives = 229/290 (78%), Gaps = 1/290 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PPD+K ELAKR +R +A L
Sbjct: 53 LMNEDGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPDMKSGELAKRKERREEAQKQLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG++E+IEKF++R VKV+KQHN++CK LLK MG+P + AP EAEAQCAAL K+G+V
Sbjct: 113 KAEEAGDEENIEKFNRRLVKVSKQHNEECKELLKYMGIPFINAPGEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA +EDMD+LTFG LR+L +RK+P+ E+ ++LEEL LT D+FIDLCIL GC
Sbjct: 173 YATGTEDMDALTFGTTVLLRNLTVAEARKLPIKEYYYNRVLEELGLTKDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSIRGIG + A+ LI+QH +I+ IL++++ ++Y +PEDW Y+EARRLF+EPE V D
Sbjct: 233 DYCDSIRGIGPKRAIDLIKQHKTIDEILKHLDSKKYTVPEDWMYKEARRLFQEPE-VADP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
E+L++KWS PDEEGLI+F+V++ F+ DR+ ++K++ AK ++QGRL+
Sbjct: 292 EELELKWSEPDEEGLIDFMVTQKNFSEDRIRNGMKKLQKAKQGTTQGRLD 341
>gi|312385968|gb|EFR30352.1| hypothetical protein AND_00127 [Anopheles darlingi]
Length = 385
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/308 (58%), Positives = 228/308 (74%), Gaps = 3/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRLLE G+KP+YVFDG+PP+LK EL KR +R +A L
Sbjct: 53 LTSVDGETTSHLMGTFYRTIRLLENGIKPVYVFDGKPPELKSGELNKRAERREEAQKALD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG EDIEKF++R VKVTKQH ++ K LL+LMGVP VEAP EAEAQCAAL K+G+V
Sbjct: 113 KATEAGAVEDIEKFNRRLVKVTKQHANEAKELLRLMGVPYVEAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV EF K+L+ LT D+FID+CIL GC
Sbjct: 173 YATATEDMDALTFGSNILLRHLTFSEARKMPVQEFHYEKVLKGFELTADEFIDMCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+IRGIG + A++LI +H SIE ILE++++ +Y +PEDW YQ+ARRLFKEPEV D
Sbjct: 233 DYCDTIRGIGPKKAIELINKHRSIEQILEHLDKSKYVVPEDWNYQQARRLFKEPEVA-DA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVAN 299
++++KWS PDEEGL+ +L + FN DR+ +KI K ++QGRL+SFFK P
Sbjct: 292 AEIELKWSEPDEEGLVKYLCGDRQFNEDRIRAGAKKILKTKTSATQGRLDSFFKVLPSTA 351
Query: 300 TSAPIKRK 307
SA KRK
Sbjct: 352 GSATPKRK 359
>gi|317374918|sp|C1BM18.1|FEN1_OSMMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|225708450|gb|ACO10071.1| Flap endonuclease 1-B [Osmerus mordax]
Length = 380
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 231/307 (75%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG +E+I+KFSKR VKVT+QHND+CK+LL LMGVP VEAP EAEA CAAL K+G+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTRQHNDECKKLLTLMGVPYVEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF ++IL+++ L+ +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFHFSRILQDIGLSHEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LIRQHGSIE IL+NI+ ++ +PEDW Y+EAR LF P+VV D
Sbjct: 232 CDYCGTIKGIGPKRAMDLIRQHGSIEEILDNIDLSKHPVPEDWLYKEARGLFLTPDVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
L++KWS PDEEGL+ F+ +E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSCLELKWSEPDEEGLVQFMCAEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSVTGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|145349446|ref|XP_001419144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|317374919|sp|A4S1G4.1|FEN1_OSTLU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|144579375|gb|ABO97437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 389
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/309 (60%), Positives = 232/309 (75%), Gaps = 3/309 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGM RT R+LEAG+KPIYVFDG+PP +K ELAKR KR +A L
Sbjct: 54 LTNEAGEVTSHLQGMLNRTCRMLEAGIKPIYVFDGKPPVMKGGELAKRKDKREEAEAALK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN+E++EK SKRTV+V+KQH+ + +L L+GVPV EAP EAEA CAA+CK+G V
Sbjct: 114 AAREAGNQEEVEKLSKRTVRVSKQHSQEVMKLASLLGVPVFEAPCEAEASCAAMCKAGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVA+EDMD+LTF APR R+LM P S+ PV+EF+ K+L L LT +QFID+CIL GC
Sbjct: 174 WAVATEDMDTLTFAAPRLARNLMAPKSQDKPVLEFDYDKVLAGLGLTPEQFIDMCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+IRGIG +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D
Sbjct: 234 DYCDTIRGIGPKTALKLIKEHGSIEKILEEIDTEKYPPPQDWDFAGARELFKNPEVM-DT 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLESFFKPVANT 300
+ + W AP+EEGLI+FLV E FN +RV K+K A+ K+SQ RLESFF P
Sbjct: 293 TGIALSWKAPNEEGLIDFLVKEKQFNEERVRAVCAKVKKARQGKASQNRLESFFGPPTII 352
Query: 301 SAPI-KRKV 308
S+ I KRKV
Sbjct: 353 SSTIGKRKV 361
>gi|156398094|ref|XP_001638024.1| predicted protein [Nematostella vectensis]
gi|317374916|sp|A7RRJ0.1|FEN1_NEMVE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156225141|gb|EDO45961.1| predicted protein [Nematostella vectensis]
Length = 377
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/294 (58%), Positives = 226/294 (76%), Gaps = 1/294 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL G+F RTIR++E G+KP+YVFDG+PP LK ELAKR +R +A L+
Sbjct: 53 LTNEAGETTSHLMGLFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERREEAQKALS 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG+ E+I+KFS+R V+VTK+HN++CK+LLKLMG+P VEAP EAEAQCAAL KSG+V
Sbjct: 113 KAEEAGDTENIDKFSRRLVRVTKEHNEECKQLLKLMGIPYVEAPCEAEAQCAALVKSGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA +EDMD+LTFG LRHL ++K+P+ EF + +L E L+ D+FIDLCIL GC
Sbjct: 173 YATGTEDMDALTFGTTVMLRHLTFSEAKKMPIKEFHLQNVLSEAGLSQDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG + ++ LIRQH SI+ ILENI+ ++ PE+W Y+EAR LFK PEV E
Sbjct: 233 DYCDSIKGIGPKRSVDLIRQHRSIDKILENIDTSKHPPPENWLYKEARELFKNPEVRNPE 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
E +++KW P+EE L+ F+ E GF+ DR+ I+K+ A++ S+QGRL+SFFK
Sbjct: 293 E-IELKWEEPNEEALVTFMCQEKGFSEDRIRSGIKKLTKARHGSTQGRLDSFFK 345
>gi|317376191|sp|B9EMY6.1|FEN1_SALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|221220444|gb|ACM08883.1| Flap endonuclease 1-B [Salmo salar]
gi|221221934|gb|ACM09628.1| Flap endonuclease 1-B [Salmo salar]
Length = 380
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 230/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG +E+I+KFSKR VKVT+QHND+CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTQQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF+ ++L+++NLT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTGVLLRHLTASEAKKLPIQEFQFTRLLQDINLTHEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LIRQHGSIE ILENI+ ++ PEDW Y+EAR LF +P+VV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDSSKHPAPEDWLYKEARGLFLQPDVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KWS PDE+ LI F+ +E F+ DR+ +KI ++ S+QGRL++FF +
Sbjct: 291 CSTVDLKWSEPDEDALIQFMCAEKQFSEDRIKNGCKKILKSRQGSTQGRLDTFFTITGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|432927428|ref|XP_004081007.1| PREDICTED: flap endonuclease 1-like [Oryzias latipes]
Length = 380
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 229/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E++EKF+KR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K G+
Sbjct: 112 AQAQEMGEQENVEKFTKRLVKVTKQHNDECKKLLSLMGVPYIEAPCEAEASCAALVKEGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF +IL++++LT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFNRILQDMDLTKEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LIRQHG IE ILENI+ +++ PEDW Y+EAR LF +PEVV D
Sbjct: 232 CDYCGTIKGIGPKRAVDLIRQHGCIEEILENIDSKKHSAPEDWLYKEARGLFLKPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KW+ PDEEGL+ F+ +E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSSVELKWNEPDEEGLVQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|193659550|ref|XP_001944971.1| PREDICTED: flap endonuclease 1 [Acyrthosiphon pisum]
Length = 380
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 167/293 (56%), Positives = 223/293 (76%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSH+ G F RTIRLLE G+KP+YVFDG+PP +K EL KR +R +A L
Sbjct: 53 LTSADGETTSHIMGTFYRTIRLLENGIKPVYVFDGKPPQMKSSELEKRADRRQEAQKSLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG+ I+KFSKR VKVT H +CK LLKLMGVP VEAP EAEAQCAA+ K+G+V
Sbjct: 113 KAEEAGDATGIDKFSKRLVKVTSTHTTECKELLKLMGVPFVEAPCEAEAQCAAMVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+P LRH+ +RK+P+ EF++ +LE + ++ D+FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSPVLLRHMTFSEARKMPIQEFQLDSVLETMEMSRDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+SI+G+G + A++L+RQ+ S+E I+EN++ ++YQ+PEDWPY+EARRLF EPE +TD
Sbjct: 233 DYCNSIKGVGPKRAIELMRQYKSLENIIENLDTKKYQVPEDWPYKEARRLFIEPE-ITDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E + +KW PDEEGL+ FL GFN DRV +K+ A++ ++QGRL+SFF
Sbjct: 292 ETIDLKWIDPDEEGLVKFLCGNRGFNEDRVRNGAKKLIKARSGTTQGRLDSFF 344
>gi|348540973|ref|XP_003457961.1| PREDICTED: flap endonuclease 1-like [Oreochromis niloticus]
Length = 380
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 176/307 (57%), Positives = 229/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKML 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+I+KF+KR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEIGEQENIDKFTKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF ++IL+++ LT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTNILLRHLTASEAKKLPIQEFHFSRILQDIGLTNEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF +PEVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSNKHPAPEDWLYKEARGLFLKPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KW+ PDEEGLI F+ E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSTVELKWNEPDEEGLIQFMCEEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|317419778|emb|CBN81814.1| Flap endonuclease 1-B [Dicentrarchus labrax]
Length = 380
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 229/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+I+KFSKR VKVTKQHNDDCK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEMGEQENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPCEAEATCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF +++L+++ LT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRMLQDIGLTNEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LIRQHG IE ILENI+ ++ PEDW Y+EARRLF +PEVV D
Sbjct: 232 CDYCATIKGIGPKRAIDLIRQHGCIEEILENIDPNKHPSPEDWLYKEARRLFLKPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KWS PDE+ LI F+ +E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSTVELKWSEPDEDALIQFMCNEKQFSEDRMRNGCKKIMKSRQGSTQGRLDSFFTITGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|82231650|sp|Q5I4H3.1|FEN1_XIPMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57639537|gb|AAW55636.1| flap endonuclease-1 [Xiphophorus maculatus]
gi|57639539|gb|AAW55637.1| flap endonuclease-1 [Xiphophorus maculatus]
Length = 380
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 225/307 (73%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L +E GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQSEDGETTSHLMGMFYRTIRMLENGIKPVYVFDGKPPQLKSAELEKRGERRAEAEKML 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+I+KFSKR VKVTKQHNDDCK+LL LMGVP +EAP EAEA CAAL K G+
Sbjct: 112 AKAQELGEQENIDKFSKRLVKVTKQHNDDCKKLLTLMGVPYIEAPCEAEASCAALVKEGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+PV EF +IL+++ LT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTNVLLRHLTASEAKKLPVQEFHFNRILQDIGLTSEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LIRQHGSIE ILENI+ ++ PEDW Y+EAR LF +PEVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIRQHGSIEEILENIDTSKHPAPEDWLYKEARNLFLKPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KW PDEE LI F+ SE F+ DR+ +K+ ++ S+QGRL+SFF +
Sbjct: 291 SSTVDLKWREPDEEALIQFMCSEKQFSEDRIRNGCKKMMKSRQGSTQGRLDSFFSVTGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|410909029|ref|XP_003967993.1| PREDICTED: flap endonuclease 1-like [Takifugu rubripes]
Length = 380
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/307 (57%), Positives = 227/307 (73%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR KRA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSELEKRGEKRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+IEKFSKR VKVTKQH+D+CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQETGEQENIEKFSKRLVKVTKQHSDECKKLLTLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ EF +++L+E LT +QFIDLCIL G
Sbjct: 172 VFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQEFHFSRVLQETGLTNEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+QHGSIE ILENI+ +Y PEDW ++EAR LF P+VV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDTNKYPSPEDWLFKEARGLFVNPDVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KW PDE+GLI F+ +E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSTVELKWGEPDEDGLIQFMCNEKQFSEDRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|260798636|ref|XP_002594306.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
gi|317374877|sp|C3ZBT0.1|FEN1_BRAFL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229279539|gb|EEN50317.1| hypothetical protein BRAFLDRAFT_275596 [Branchiostoma floridae]
Length = 380
Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/307 (57%), Positives = 237/307 (77%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL GMF RTIR+++ G+KP+YVFDG+PP++K ELAKR +R +A L
Sbjct: 52 MLTNDAGEATSHLMGMFYRTIRMVDNGIKPVYVFDGKPPNMKSGELAKRAERREEAQKAL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG ED+ KF KR VKVTK+HN +CK+LL LMG+P V+AP EAEAQCA L K G+
Sbjct: 112 EKAEEAGEAEDVNKFQKRLVKVTKEHNAECKKLLTLMGIPYVDAPCEAEAQCAELAKKGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA +EDMD LTFG LRHL +RK+P+ E+ ++L EL+LT DQFIDLCIL G
Sbjct: 172 VYAAGTEDMDVLTFGTNIMLRHLTFSEARKMPIKEYYYDRLLAELDLTQDQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIG + A++LIRQ+ SIE IL++I+ +++ +PEDWPY +AR+LFKEPE VT
Sbjct: 232 CDYCDSIRGIGPKRAIELIRQYKSIEEILKHIDTKKFPVPEDWPYDQARKLFKEPE-VTP 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+Q+++KW PDEEGL+ ++ +E GF+ DR+ +K+K A++ S+QGRL+SFFK +++
Sbjct: 291 ADQVELKWVDPDEEGLVQYMSNEKGFSEDRIKNGAKKLKNARHTSTQGRLDSFFKVMSSP 350
Query: 301 SAPIKRK 307
S +KRK
Sbjct: 351 S--VKRK 355
>gi|340367941|ref|XP_003382511.1| PREDICTED: flap endonuclease 1-like [Amphimedon queenslandica]
Length = 373
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 169/307 (55%), Positives = 232/307 (75%), Gaps = 1/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L E+GE TSHL G F RTIR+++ G+KP+YVFDG+PP +K ELAKR +RA+A +L
Sbjct: 52 VLMTESGETTSHLMGFFYRTIRMVDNGIKPVYVFDGKPPTMKSGELAKRADRRAEAQKEL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A E G+ +++EKF KR VKVT +H + K+LL LMG+P VEAP EAEAQCAAL K+G+
Sbjct: 112 LKAEEQGDIQEVEKFQKRLVKVTPEHVSEAKKLLSLMGIPYVEAPCEAEAQCAALTKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTFG+ +R+L +RK+PV E ++K L EL++ QFIDLCIL G
Sbjct: 172 VYATATEDMDALTFGSSILVRNLTASEARKLPVREINLSKALTELDMDQSQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSI+GIG A+KL+RQHG+IE IL+ ++ ++YQIPE+WP++EARRLF EP+ V+
Sbjct: 232 CDYCDSIKGIGPVNAMKLLRQHGNIEKILKGLSGKKYQIPENWPFEEARRLFVEPD-VSP 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KW PDEEG++ FLV E GF+ DR+ ++K+ +K S+QGRL+SFFK +
Sbjct: 291 ADDIELKWGNPDEEGIVKFLVEEKGFSEDRIRNGVKKLLKSKQGSTQGRLDSFFKAAPSP 350
Query: 301 SAPIKRK 307
A IKRK
Sbjct: 351 KAGIKRK 357
>gi|347838761|emb|CCD53333.1| similar to flap endonuclease 1 [Botryotinia fuckeliana]
Length = 395
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 179/314 (57%), Positives = 223/314 (71%), Gaps = 7/314 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A AT+ L
Sbjct: 52 MLTNEDGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCAAL ++G+
Sbjct: 112 EEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAALARAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+L F +P LRHL RK P+ E + K+L LN+ QF+DLCIL G
Sbjct: 172 VYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV 237
CDY D I IG TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF +P+V
Sbjct: 232 CDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDARELFFKPDV 291
Query: 238 -VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
D E KW APD EGL+ FLV E GF+ DRV A +++ S Q RLE FFKP
Sbjct: 292 RPADHEDCDFKWEAPDVEGLVKFLVIEKGFSEDRVRSAAQRLTKNLKSSQQARLEGFFKP 351
Query: 297 VANTS---APIKRK 307
+ T A +KRK
Sbjct: 352 IPKTDEERANLKRK 365
>gi|449283444|gb|EMC90086.1| Flap endonuclease 1 [Columba livia]
Length = 382
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 235/307 (76%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E+G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMVESGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG + +IEK+SKR VKVT+QHND+CK+LL LMG+P +EAP EAEA CAAL K+G+
Sbjct: 112 QEAQEAGEENNIEKYSKRLVKVTQQHNDECKKLLTLMGIPYLEAPGEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC+SIRGIG + A++LI++H +IE I++ I+ ++Y +PE+W ++EA++LF EP+VV D
Sbjct: 232 CDYCESIRGIGPKRAVELIKEHKTIEKIVQQIDTKKYPLPENWLHKEAQKLFLEPDVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KW+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PDAVELKWTEPNEEELVRFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 ITSAKRK 356
>gi|226478114|emb|CAX72750.1| Flap endonuclease 1 [Schistosoma japonicum]
Length = 389
Score = 363 bits (932), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 169/309 (54%), Positives = 229/309 (74%), Gaps = 6/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSHL GMF RTIR++E+G+KP+YVF+G+PP +K ELAKR +R ++T +LA
Sbjct: 53 LMNAEGESTSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKRADRRIESTKELA 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A + E IEKFSKR VKVT HN+DCK+LL+LMGVP V AP EAEAQCAAL KSG+V
Sbjct: 113 KAEAEEDLEAIEKFSKRLVKVTPAHNEDCKQLLRLMGVPFVNAPGEAEAQCAALAKSGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAV +EDMD+L FG P LRHL +RK+ + EF +A +LE L+LTMDQF+DLCIL GC
Sbjct: 173 YAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEFNLASVLEGLSLTMDQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY D+IRGIG + AL L+ ++ SI+ +L+NI++ +Y +P DWPY++A++LF PE VTD
Sbjct: 233 DYVDTIRGIGPKKALDLLHKYHSIDCVLKNIDKSKYPVPNDWPYEDAKKLFLNPE-VTDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+++KW PDEEGL+ FL ++GFN +R+ +K+ AKN ++QGR+++FF TS
Sbjct: 292 SLIELKWDEPDEEGLVEFLCHKHGFNEERIRNGAKKLFKAKNTTTQGRIDNFF-----TS 346
Query: 302 APIKRKVYL 310
P K + +
Sbjct: 347 IPSKNNLLI 355
>gi|321473340|gb|EFX84308.1| hypothetical protein DAPPUDRAFT_47502 [Daphnia pulex]
Length = 374
Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 171/314 (54%), Positives = 230/314 (73%), Gaps = 7/314 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLT+ GE TSHL G+F RTIR+++ G+KP+YVFDG+PPD+K EL KR KR +A+ L
Sbjct: 52 MLTSADGETTSHLMGIFYRTIRMVDNGIKPVYVFDGKPPDMKGGELTKRAEKREEASKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A +AG+ ++EK +KR VKV K H D+CK+LL LMG+P VEAP EAEAQCAAL K+G+
Sbjct: 112 VLATDAGDAVEMEKMNKRLVKVNKGHTDECKQLLTLMGIPYVEAPCEAEAQCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMDSLTFG+ LR+L ++K+P+ EF + KIL+ L+ TMD+FIDLCI+ G
Sbjct: 172 VYATATEDMDSLTFGSNVLLRYLTYSEAKKMPIKEFHLDKILDGLSYTMDEFIDLCIMLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+I+GIG + A +LI +H IE ++EN++ ++Y +PE+WPYQEARRLFK P+V D
Sbjct: 232 CDYCDTIKGIGAKRAKELIDKHRCIEKVIENLDTKKYTVPENWPYQEARRLFKTPDVA-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVA 298
E L +KW+ PDEEGL+ F+ + FN +R+ +K+ AK +QGRL+SFFK P +
Sbjct: 291 AETLDLKWTQPDEEGLVKFMCGDKNFNEERIRSGAKKLCKAKTGQTQGRLDSFFKVLPSS 350
Query: 299 NTSAP----IKRKV 308
S P KRKV
Sbjct: 351 KPSTPSTPASKRKV 364
>gi|318055766|ref|NP_001187811.1| flap endonuclease 1-b [Ictalurus punctatus]
gi|308324033|gb|ADO29152.1| flap endonuclease 1-b [Ictalurus punctatus]
Length = 380
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 170/307 (55%), Positives = 230/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L N+ GE TSHL GMF RTIR+L++G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNDDGETTSHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+I+KFSKR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEMGEQENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
YA A+EDMD LTFG LRHL ++K+ + EF +++L+E++L+ QFIDLCIL G
Sbjct: 172 AYATATEDMDGLTFGTSVLLRHLTASEAKKLSIQEFHFSRVLQEMSLSHQQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+Q+GSIE IL+NI++ ++ PEDW Y+EAR LF EPEVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQYGSIEEILDNIDQSKHPAPEDWLYKEARALFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KW+ PDE+GL+ F+ SE F+ DR+ +KI ++ S+QGRL++FF +
Sbjct: 291 CTAMELKWNEPDEDGLVQFMCSEKQFSEDRIRNGCKKIMKSRRGSTQGRLDTFFTVTGSI 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|443720454|gb|ELU10206.1| hypothetical protein CAPTEDRAFT_21886 [Capitella teleta]
Length = 377
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 175/307 (57%), Positives = 235/307 (76%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN GE TSHL G+F RT+R+++ G+KP+YVFDG+PPD+K EL+KR +R +A L
Sbjct: 52 MLTNADGETTSHLMGIFYRTLRMIDHGIKPVYVFDGKPPDMKSGELSKRAGRREEAQKAL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG E++EKFSKR VKVTK+HN++CK+LL LMG+P VEAP EAEAQCA+L K G
Sbjct: 112 EKAEEAGEAENVEKFSKRLVKVTKEHNEECKQLLGLMGIPFVEAPCEAEAQCASLVKGGH 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA +EDMD+LTFG+ LRHL +RK+P+ EF + K+L L L+ ++FIDLCIL G
Sbjct: 172 VYATGTEDMDALTFGSTVLLRHLTFSEARKMPIKEFSLEKVLAGLELSYEEFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIG + A+ LI+QH SIE +L+NI+ ++Y IPEDWP+++AR LFK+P+V+ D
Sbjct: 232 CDYCDSIRGIGPKRAVDLIKQHRSIEAVLKNIDTKKYTIPEDWPFEQARELFKQPDVLKD 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KW+ P EE LI F+V E GFN DR+ +K++ A++ S+QGRL+SFFK + T
Sbjct: 292 SE-VELKWTEPKEEELIKFMVEEKGFNEDRIRNGCKKLQKARHGSTQGRLDSFFKVTSTT 350
Query: 301 SAPIKRK 307
S KRK
Sbjct: 351 ST--KRK 355
>gi|317374875|sp|C3KJE6.1|FEN1_ANOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|229367576|gb|ACQ58768.1| Flap endonuclease 1-A [Anoplopoma fimbria]
Length = 380
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/307 (57%), Positives = 226/307 (73%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR KRA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSAELEKRGEKRAEAEKML 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G +E+I+KFSKR VKVTKQHND+CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQELGEQENIDKFSKRLVKVTKQHNDECKKLLTLMGVPYIEAPCEAEATCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A A+EDMD LTFG LRHL ++K+P+ E ++IL+++ LT +QFIDLCI G
Sbjct: 172 VFATATEDMDGLTFGTNVLLRHLTASEAKKLPIQELHYSRILQDIGLTNEQFIDLCIPLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A+ LI+QHGSIE ILENI+ ++ PEDW Y+EAR LF + EVV D
Sbjct: 232 CDYCGTIKGIGPKRAIDLIKQHGSIEEILENIDSSKHPAPEDWLYKEARGLFLKAEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KWS PDEEGLI F+ +E F+ DR+ +KI ++ S+QGRL+SFF +
Sbjct: 291 CSTVDLKWSEPDEEGLIQFMCNEKQFSEDRMRNGCKKILKSRQGSTQGRLDSFFSITGSL 350
Query: 301 SAPIKRK 307
S+ KRK
Sbjct: 351 SS--KRK 355
>gi|341882587|gb|EGT38522.1| hypothetical protein CAEBREN_12338 [Caenorhabditis brenneri]
gi|341895701|gb|EGT51636.1| hypothetical protein CAEBREN_24192 [Caenorhabditis brenneri]
Length = 382
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 224/293 (76%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L
Sbjct: 53 LQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALT 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ ++ EKF +R VKVTKQ N++ K LL LMG+PVVEAP EAEAQCA L K+G+V
Sbjct: 113 EAKEKGDAKEAEKFERRLVKVTKQQNEEVKHLLGLMGIPVVEAPCEAEAQCAHLVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ A+EDMD+LTFG+ LRHL+ P S+KIP+ EF +A++LEE+ L+ D+FIDLCIL GC
Sbjct: 173 FGTATEDMDALTFGSSVLLRHLLAPESKKIPIKEFHLARVLEEMKLSEDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +IRG+G + A++LIRQH +IET+LENI++ +Y PEDWPY+ AR LF+EPE VT
Sbjct: 233 DYCGTIRGVGPKKAVELIRQHKNIETVLENIDQTKYPPPEDWPYKRARELFREPE-VTKG 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +++ W PD EG++ F+ + F+ +R+ A+ +++ ++N +QGR++SFF
Sbjct: 292 EDVELTWKEPDVEGIVKFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFF 344
>gi|440797493|gb|ELR18579.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 434
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 234/310 (75%), Gaps = 8/310 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+EAGE TSHL G+++RT+RL+ G+KP+YVFDG+PP +K EL KR +K+ +A L
Sbjct: 18 LTDEAGETTSHLMGIWSRTLRLIAYGIKPVYVFDGRPPVMKGTELKKRSAKKKEAEQGLE 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ E + K KRTV VT +HN++CK+LL+LMG+PVVEAP+EAEAQCA LC++G+V
Sbjct: 78 EATELGDTETMRKLEKRTVHVTPKHNEECKKLLRLMGIPVVEAPTEAEAQCAELCRAGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMDSLTF P LRHL ++K P++E ++ K+L+ +TM+QFIDLCIL+GC
Sbjct: 138 FATGSEDMDSLTFATPILLRHLNYAEAQKKPIIEIDLEKVLKGFGMTMEQFIDLCILAGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+IRGIG + AL++IR++GSIE L+N+++ +Y +PE +PY+ R LFK P+ VT
Sbjct: 198 DYCDTIRGIGPKRALEMIRKYGSIEGTLKNLDKAKYPLPEPFPYEAVRELFKHPD-VTPG 256
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN-- 299
+Q+++KW PDEEGL+ +LV E FN +RV K IEK+K A+ + QGRL+ F VAN
Sbjct: 257 DQVELKWGEPDEEGLLQYLVKEKQFNEERVRKGIEKLKKARGSAVQGRLDGF---VANMG 313
Query: 300 --TSAPIKRK 307
TS+P K+K
Sbjct: 314 KATSSPQKKK 323
>gi|303279240|ref|XP_003058913.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460073|gb|EEH57368.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 360
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 183/307 (59%), Positives = 241/307 (78%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+AGEVTSHLQGMF RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A LA
Sbjct: 54 LTNDAGEVTSHLQGMFMRTCRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKRDEAEAALA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG++E+IEK SKRTV+VT+Q + + +L +LMG+PV EAP EAEA CAALCK+G V
Sbjct: 114 KAKEAGDQEEIEKMSKRTVRVTRQQSQEVMQLARLMGLPVFEAPCEAEASCAALCKAGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P+ R+LM P+S+ P++EF+ KIL EL++T +QFID+CIL GC
Sbjct: 174 YAAASEDMDTLCFACPKLARNLMSPASQGKPILEFDYEKILTELDMTWEQFIDVCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+G+G A+ LI++HG+IET+L++++ E+Y +PEDWPY+EAR LFK P+VV +
Sbjct: 234 DYCDSIKGVGPVKAVSLIKKHGNIETLLQHLDTEKYPVPEDWPYKEARELFKHPDVV-NT 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA-NT 300
+ L++KW+APDEEG++ FLV E F +RV ++K+KAAK KSSQ RLESFF V +
Sbjct: 293 DGLELKWTAPDEEGIVAFLVGEKQFGEERVRNTLKKLKAAKGKSSQNRLESFFGAVTVKS 352
Query: 301 SAPIKRK 307
S KRK
Sbjct: 353 STTGKRK 359
>gi|358333862|dbj|GAA32436.2| flap endonuclease-1 [Clonorchis sinensis]
Length = 350
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/304 (56%), Positives = 229/304 (75%), Gaps = 6/304 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSHL GMF RTIR++E G+KP+YVF+G+PP +K ELAKR +R +++ +LA
Sbjct: 17 LMNSEGESTSHLMGMFYRTIRMIENGIKPVYVFEGKPPSMKAGELAKRTERRIESSRELA 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E + E IEKFSKR VKVT QHNDDCK LL+LMGVP ++AP EAEAQCAAL K+G+V
Sbjct: 77 KAEEEEDLEAIEKFSKRLVKVTPQHNDDCKELLRLMGVPYIKAPGEAEAQCAALAKAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAV +EDMD+L FG P LRHL +RK+P+ EF + +L L L+MDQF+DLCIL GC
Sbjct: 137 YAVGTEDMDALAFGCPVLLRHLTFSEARKLPIQEFNLPSVLAGLELSMDQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY D+IRGIG + A+ L+R+H SIE +L+NI+ +Y +PE+WPY+EA++LF PE + D
Sbjct: 197 DYVDTIRGIGPKKAIDLLRKHKSIEEVLKNIDHSKYPVPEEWPYEEAKKLFVTPE-IEDP 255
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF-----KP 296
E+++IKWS PDEEGL+ FL ++GFN +RV +K+ AKN ++QGR++SFF KP
Sbjct: 256 EKIEIKWSEPDEEGLVAFLCHKHGFNEERVRNGAKKLMKAKNTNTQGRIDSFFQALPSKP 315
Query: 297 VANT 300
N+
Sbjct: 316 SVNS 319
>gi|16758170|ref|NP_445882.1| flap endonuclease 1 [Rattus norvegicus]
gi|8896169|gb|AAF81265.1|AF281018_1 flag structure-specific endonuclease [Rattus norvegicus]
Length = 380
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+Y+FDG+PP LK +LAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSAQLAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+S+RGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EAR+LF EPEVV D
Sbjct: 232 SDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|118405170|ref|NP_001072959.1| flap endonuclease 1 [Gallus gallus]
gi|82082625|sp|Q5ZLN4.1|FEN1_CHICK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53129083|emb|CAG31359.1| hypothetical protein RCJMB04_5g12 [Gallus gallus]
Length = 381
Score = 360 bits (924), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 233/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R++A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG + +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+
Sbjct: 112 QEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + ++L++L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC+SIRGIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+V+
Sbjct: 232 CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINP 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
++ +++KW+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 292 DD-VELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 ITSAKRK 356
>gi|268564494|ref|XP_002639126.1| C. briggsae CBR-CRN-1 protein [Caenorhabditis briggsae]
gi|317374879|sp|A8XL25.1|FEN1_CAEBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 382
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 162/293 (55%), Positives = 224/293 (76%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ +E GE TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L
Sbjct: 53 MQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRTERRAEAEKALT 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ ++ EKF +R VKVTKQ N++ K+LL LMG+PVVEAP EAEAQCA L K+G+V
Sbjct: 113 EAKEKGDAKEAEKFERRLVKVTKQQNEEVKQLLGLMGIPVVEAPCEAEAQCANLVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y A+EDMD+LTFG+ LRHL+ P ++KIP+ EF +A++LEE+ LT DQFIDLCIL GC
Sbjct: 173 YGTATEDMDALTFGSCVLLRHLLAPEAKKIPIKEFHLARVLEEMQLTKDQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +IRGIG + A++LI+QH +IET+LENI++ +Y P DWPY+ AR LF EPEV+ +
Sbjct: 233 DYCGTIRGIGPKKAVELIKQHKNIETVLENIDQTKYPPPADWPYKRARELFHEPEVMKCD 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +++ W PD EG++ F+ E F+ DR+ A+ +++ ++N +QGR++SFF
Sbjct: 293 E-VELTWKDPDVEGIVKFMCGEKNFSEDRIRSAMVRMQKSRNAGTQGRIDSFF 344
>gi|15778123|dbj|BAB68507.1| FEN-1 nuclease [Gallus gallus]
Length = 381
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 233/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +R++A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRSEAEKHL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG + +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+
Sbjct: 112 QEAQEAGEEANIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + ++L++L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRVLQDLGLTWEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC+SIRGIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+V+
Sbjct: 232 CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVINP 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
++ +++KW+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 292 DD-VELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 ITSAKRK 356
>gi|326919868|ref|XP_003206199.1| PREDICTED: flap endonuclease 1-like [Meleagris gallopavo]
Length = 381
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 233/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELA+R +R++A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELARRTERRSEAEKHL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG + +IEKFSKR VKVT+QH D+CK+LL LMG+P VEAP EAEA CA L K+G+
Sbjct: 112 QEAQEAGEETNIEKFSKRLVKVTQQHTDECKKLLMLMGIPYVEAPGEAEASCATLVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLGLTWEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC+SIRGIG + A++LI+QH +IE I+++I+ ++Y +PE+W ++EA++LF EP+VV
Sbjct: 232 CDYCESIRGIGPKRAVELIKQHKTIEEIIQHIDTKKYPLPENWLHKEAQKLFLEPDVVNP 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
++ +++KW+ P+EE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 292 DD-VELKWTEPNEEELVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 ITSAKRK 356
>gi|81883819|sp|Q5XIP6.1|FEN1_RAT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|53733451|gb|AAH83630.1| Fen1 protein [Rattus norvegicus]
gi|149062370|gb|EDM12793.1| flap structure-specific endonuclease 1 [Rattus norvegicus]
Length = 380
Score = 360 bits (923), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+Y+FDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+S+RGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EAR+LF EPEV+ D
Sbjct: 232 SDYCESVRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEARQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLNKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|126344550|ref|XP_001362314.1| PREDICTED: flap endonuclease 1-like [Monodelphis domestica]
Length = 380
Score = 359 bits (922), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 228/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 MLQNEEGEATSHLVGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAERQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A++AG +E+ +KFSKR VKVTK+HND+CK+LL+LMG+P +EAP EAEA CAAL K+G+
Sbjct: 112 QQALDAGAQEEADKFSKRLVKVTKEHNDECKQLLRLMGIPYLEAPGEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+ L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQGLGLTQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI+QH SIE I+ ++ +Y +PE+W ++EA+ LF EP+V+ D
Sbjct: 232 SDYCESIRGIGPKRAIDLIQQHKSIEEIIRKLDPSKYPVPENWLHKEAQHLFLEPDVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+++KW PDEEGL+ F+ E FN DRV + ++ ++ S+QGRL+ FFK V
Sbjct: 291 VNTVELKWGEPDEEGLVQFMCGEKQFNEDRVRNGVRRLSKSRQGSTQGRLDDFFK-VTGC 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 LTSAKRK 356
>gi|148709394|gb|EDL41340.1| flap structure specific endonuclease 1, isoform CRA_a [Mus
musculus]
Length = 396
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 68 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 127
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 128 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 187
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 188 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 247
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 248 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 306
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 307 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 365
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 366 LSSAKRK 372
>gi|46048490|ref|NP_032025.2| flap endonuclease 1 [Mus musculus]
gi|410025484|ref|NP_001258543.1| flap endonuclease 1 [Mus musculus]
gi|410025486|ref|NP_001258544.1| flap endonuclease 1 [Mus musculus]
gi|16307328|gb|AAH10203.1| Flap structure specific endonuclease 1 [Mus musculus]
gi|26337949|dbj|BAC32660.1| unnamed protein product [Mus musculus]
gi|26347483|dbj|BAC37390.1| unnamed protein product [Mus musculus]
gi|53791234|dbj|BAD52443.1| flap endonuclease 1 [Mus musculus]
gi|74145457|dbj|BAE36169.1| unnamed protein product [Mus musculus]
gi|74150381|dbj|BAE32236.1| unnamed protein product [Mus musculus]
gi|74185061|dbj|BAE39135.1| unnamed protein product [Mus musculus]
gi|148709396|gb|EDL41342.1| flap structure specific endonuclease 1, isoform CRA_c [Mus
musculus]
Length = 380
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|20071071|gb|AAH27295.1| Fen1 protein [Mus musculus]
Length = 380
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGVKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|317374903|sp|D3TQJ5.1|FEN1_GLOMM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|289742451|gb|ADD19973.1| 5'-3' exonuclease [Glossina morsitans morsitans]
Length = 382
Score = 358 bits (920), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/309 (57%), Positives = 220/309 (71%), Gaps = 4/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GE TSHL GMF RTIRLLE G+KP+YVFDG+PP K ELAKR +R DA L
Sbjct: 53 LTNVDGETTSHLMGMFYRTIRLLENGIKPVYVFDGKPPISKSGELAKRAERREDAQKALE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAGN+ D++KF++R VKVTK+H ++ K LLKLMGVP VEAP EAEAQCAAL K+G+V
Sbjct: 113 KATEAGNEADMDKFNRRLVKVTKEHANEAKELLKLMGVPYVEAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV EF AK+L+ LT +FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSGILLRHLTFSEARKMPVKEFSYAKVLDGFGLTSQEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD IRGIG + A +L+ + IETILE I+R++Y +PEDW YQ AR LF PEV D
Sbjct: 233 DYCDGIRGIGPKRATELMNSYKDIETILEKIDRKKYTVPEDWNYQIARELFVNPEVA-DP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK--PVAN 299
L++KW PDE+GL+ F + FN DRV +KI K+ +QGRL+SFFK P A
Sbjct: 292 SSLELKWFDPDEDGLVRFFCGDRQFNEDRVRSGAKKILKCKSSQTQGRLDSFFKVIPAAC 351
Query: 300 TSAPIKRKV 308
+ P KRK
Sbjct: 352 GTTP-KRKA 359
>gi|391334775|ref|XP_003741776.1| PREDICTED: flap endonuclease 1-like [Metaseiulus occidentalis]
Length = 379
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/308 (55%), Positives = 223/308 (72%), Gaps = 4/308 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN GE TSHL G F RTIR++E G+KP+YVFDG+PPD+K EL KR +R +A +L
Sbjct: 52 MLTNADGETTSHLVGFFYRTIRMIENGIKPLYVFDGKPPDMKSGELEKRAERREEAQKEL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A E GN+EDI KF +R VKV+KQHN D +RLL LMGVP + AP EAEAQCA L K+ +
Sbjct: 112 DKATEVGNQEDINKFQRRLVKVSKQHNADAQRLLALMGVPFLVAPCEAEAQCAELVKAQK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFGA LRH+ +RK+P+ EF + KIL ELN T +FIDLCIL G
Sbjct: 172 VYAAATEDMDCLTFGASVLLRHMTFSEARKMPIKEFNLPKILAELNFTQREFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A++L+R H IE +L+NI+ ++Y PEDW ++ AR LF++P+V
Sbjct: 232 CDYCGTIKGIGPKRAIELMRSHRCIENVLKNIDTKKYPPPEDWQFERARELFEKPDVTPG 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E L KW+ PDEEGL+ FL ENGFN +R+ +K++ K+ S QGRL+S+FK AN
Sbjct: 292 SE-LDFKWTEPDEEGLVKFLCEENGFNEERIRNGAKKLQKGKSSSQQGRLDSYFK--ANP 348
Query: 301 SAP-IKRK 307
S P +KRK
Sbjct: 349 STPAVKRK 356
>gi|148709395|gb|EDL41341.1| flap structure specific endonuclease 1, isoform CRA_b [Mus
musculus]
Length = 432
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 104 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 163
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 164 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 223
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 224 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 283
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 284 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 342
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 343 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 401
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 402 LSSAKRK 408
>gi|26345786|dbj|BAC36544.1| unnamed protein product [Mus musculus]
Length = 411
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|354503001|ref|XP_003513570.1| PREDICTED: flap endonuclease 1-like [Cricetulus griseus]
Length = 380
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGVEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|412993680|emb|CCO14191.1| predicted protein [Bathycoccus prasinos]
Length = 390
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/308 (57%), Positives = 232/308 (75%), Gaps = 3/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E G+VT+HL G+ +RT R+LEAG+KP+YVFDG+PP LK ELAKR KR A DL
Sbjct: 54 LTDENGQVTAHLIGVLSRTCRMLEAGIKPVYVFDGKPPTLKGGELAKRKDKRDQAEKDLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G+K+ IEK +KRTV+V+K+ N + RL+KL+GVPV EAP EAEA CAA+CK+G V
Sbjct: 114 VARETGDKDAIEKAAKRTVRVSKEQNQEVMRLVKLLGVPVFEAPCEAEATCAAMCKAGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ A+EDMD+LTF PR +R+LM P+S+K + E++ K+L+ L+L DQFIDLCIL GC
Sbjct: 174 HGAATEDMDTLTFACPRLIRNLMAPASQKKDIAEYDFDKVLKGLDLDYDQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY DSIRGIG TAL+LIR++ +IETILENI ++Y +PE++ Y+EAR+LFKEPEV+ D
Sbjct: 234 DYTDSIRGIGPVTALQLIREYKNIETILENIKDKKYVVPENFMYKEARQLFKEPEVI-DT 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLESFFKPVANT 300
L++KWS P+EEG+I FLV E FN +RV A+ +IK AK +SQ RLESFF
Sbjct: 293 NNLELKWSKPNEEGVIEFLVKEKSFNEERVRNALARIKKAKAGVASQNRLESFFGAATVK 352
Query: 301 SAPI-KRK 307
S+ I KRK
Sbjct: 353 SSTIGKRK 360
>gi|342882941|gb|EGU83505.1| hypothetical protein FOXB_05915 [Fusarium oxysporum Fo5176]
Length = 395
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 170/305 (55%), Positives = 217/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLNMERKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HGS+E ++E I ++ +Y IPEDWPY++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGSLEKVVEAIEKDPKKKYTIPEDWPYKDARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV
Sbjct: 293 QADHHDCDFKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTDA 357
>gi|431910392|gb|ELK13465.1| Flap endonuclease 1 [Pteropus alecto]
Length = 381
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKRL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A + G +ED+EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQDVGTEEDVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|242014497|ref|XP_002427926.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
gi|212512410|gb|EEB15188.1| Flap endonuclease 1-B, putative [Pediculus humanus corporis]
Length = 380
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 169/307 (55%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ +GE TSHL G F RTIR++E G+KP+YVFDG+PP+LK EL+KR KR +A LA
Sbjct: 53 LTDSSGETTSHLMGTFYRTIRMVENGIKPVYVFDGKPPELKSGELSKRAEKREEAQKALA 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E+GN E+++KFS+R VKVTK H +CK LLKLMG+P +EAP EAEAQCAAL K+G+V
Sbjct: 113 KAEESGNTEEVDKFSRRLVKVTKDHVAECKELLKLMGIPYIEAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV E + K+L EL +T ++FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSNIILRHLTFSEARKMPVQEIYLDKVLAELEMTQNEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG + A++LI++H S+E ILEN++ +Y +PEDW +QEAR+LF P+V D
Sbjct: 233 DYCDSIKGIGPKRAIELIKKHKSLEKILENLDSGKYVVPEDWIFQEARKLFINPDVC-DA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+++KW+ PD EGL+ +L + FN +RV +K+ + +QGRL++FFK V +TS
Sbjct: 292 SNVELKWNEPDTEGLVKYLCGDKLFNEERVRNGAKKLLKGRTGQTQGRLDTFFK-VISTS 350
Query: 302 APIKRKV 308
KRKV
Sbjct: 351 PAKKRKV 357
>gi|440633913|gb|ELR03832.1| flap endonuclease-1 [Geomyces destructans 20631-21]
Length = 395
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/308 (55%), Positives = 220/308 (71%), Gaps = 4/308 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++A+AT+ L
Sbjct: 53 LMNESGETTSHLLGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFARKAEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+V++QHN +C++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVSRQHNAECQQLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P +RHL +RK P+ E V K+LE L + QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILIRHLTFSEARKEPIQEIHVDKVLEGLGMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALK+IR+HGS+E ++E IN + +Y IPEDWPY +AR LF P+V
Sbjct: 233 DYLDPIPKIGPNTALKMIREHGSLEKVVEWINNDGKNKYTIPEDWPYADARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW PD EGLI FLV EN F+ +RV I K++ S Q RLE FFKP+
Sbjct: 293 PADHAECDFKWEQPDVEGLIKFLVVENAFSEERVRGGIAKLQKNLKSSQQARLEGFFKPI 352
Query: 298 ANTSAPIK 305
T A IK
Sbjct: 353 PKTEAEIK 360
>gi|348560389|ref|XP_003465996.1| PREDICTED: flap endonuclease 1-like [Cavia porcellus]
Length = 380
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A G +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAVGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+ L+LT QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQALDLTQAQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDHSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS PDEE L+ FL E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPDEEQLVKFLCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|383859686|ref|XP_003705323.1| PREDICTED: flap endonuclease 1-like [Megachile rotundata]
Length = 383
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 172/302 (56%), Positives = 224/302 (74%), Gaps = 1/302 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
GE TSHL GMF RTIRL+E G+KPIYVFDG+PP+LK ELAKR KR +A L A EA
Sbjct: 58 GETTSHLMGMFYRTIRLVEQGIKPIYVFDGKPPNLKGGELAKRAEKRDEAQKLLQAAEEA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
GN EDIEKF++R VKVT+ H D+ K+LLKLMG+P VEAP EAEAQCAAL K+G+V+A A+
Sbjct: 118 GNAEDIEKFNRRLVKVTQVHADEAKQLLKLMGIPYVEAPCEAEAQCAALVKAGKVFATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG LR L +RK+PV EF K+LE L L D+FIDLCI+ GCDY +S
Sbjct: 178 EDMDALTFGCNVLLRRLTFSEARKMPVQEFHHDKVLEGLGLNQDEFIDLCIMLGCDYTNS 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+G+G + A++LI+ H S+E ILEN++ +Y +PEDW Y++AR LF+EPEV EE ++
Sbjct: 238 IKGVGPKRAMELIKTHRSLEKILENLDTNKYPVPEDWNYKQARLLFQEPEVANVEE-IEF 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 306
KWS PDE+GL+NFL + F+ +RV +K+ A++ S+QGRL++FFK + N + KR
Sbjct: 297 KWSEPDEDGLVNFLCGDKQFSEERVRNGAKKLYKARHTSTQGRLDTFFKVLPNQNPSPKR 356
Query: 307 KV 308
K
Sbjct: 357 KA 358
>gi|110766831|ref|XP_395769.3| PREDICTED: flap endonuclease 1 [Apis mellifera]
Length = 379
Score = 357 bits (916), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/307 (55%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL GMF RTIRL+E G+KP+YVFDG+PP+LK ELAKR KR +A L
Sbjct: 53 LTSVDGETTSHLMGMFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAEKRDEAQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN EDIEKF++R VKVTK+H D+ K+LLKLMG+P ++AP EAEAQCAA+ K+G+V
Sbjct: 113 AAEEAGNAEDIEKFNRRLVKVTKEHADEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV EF K+LE L L+ D+FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +SI+G+G + A++LI+ H ++E I+EN++ +++ IPEDW Y++AR LF+EPE VTD
Sbjct: 233 DYTNSIKGVGPKRAIELIKTHRTLEKIIENLDTKKFPIPEDWNYKQARLLFQEPE-VTDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E + +KW PDEE L+ +L + FN +RV +K+ A+N S+QGRL++FFK + N S
Sbjct: 292 ETIDLKWIEPDEENLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKVLPN-S 350
Query: 302 APIKRKV 308
P KRK+
Sbjct: 351 TPTKRKI 357
>gi|358054307|dbj|GAA99233.1| hypothetical protein E5Q_05927 [Mixia osmundae IAM 14324]
Length = 389
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 168/309 (54%), Positives = 222/309 (71%), Gaps = 4/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G F RTIR++E G+KP YVFDG+PPDLK L KR++KRA+AT++
Sbjct: 54 LMNESGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPDLKSGVLKKRFAKRAEATEEGE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G E+I+K S+RTV+VTK+HN++C+RLLKLMG+P + APSEAEAQCA LC+ G V
Sbjct: 114 DAKETGTVEEIDKLSRRTVRVTKEHNEECQRLLKLMGIPFIIAPSEAEAQCAELCRGGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y SEDMD+LTF +P LRHL RK+P+ E++++L+ + LTMD+FID+CILSGC
Sbjct: 174 YGTGSEDMDTLTFSSPIILRHLTFSEQRKLPIDVIELSEVLKGMELTMDEFIDMCILSGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY D + IG +TALKLI+ HG ++ ++E + PEDWPY+EAR LFK P+V+ E
Sbjct: 234 DYVDPLPKIGAKTALKLIKDHGDLDAVVEALKDTPRAAPEDWPYREARELFKHPDVLKAE 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E + +KW PD EGL++FLV + GFN DRV K KIK+ QGRL+ FF A +
Sbjct: 294 E-VDLKWEDPDIEGLVDFLVRDKGFNEDRVRKGAAKIKSGLQTKQQGRLDGFFTKAAPSG 352
Query: 302 A---PIKRK 307
P+KRK
Sbjct: 353 EFINPMKRK 361
>gi|395545349|ref|XP_003774565.1| PREDICTED: flap endonuclease 1 [Sarcophilus harrisii]
Length = 380
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 234/307 (76%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGEATSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E+ EKF+KR VKVTKQHN++CKRLL+LMG+P +EAPSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGAEEEAEKFAKRLVKVTKQHNEECKRLLRLMGIPYLEAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+ L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQGLGLTQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI+QH SIE IL ++ ++Y +P++W ++EA+RLF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAMDLIQQHKSIEEILRRLDPKKYPVPDNWLHKEAQRLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS PDEEGL+ F+ E FN DRV A++++ ++ S+QGRL+ FFK V
Sbjct: 291 AEAVELKWSEPDEEGLVEFMCGEKQFNEDRVRNAVKRLSKSRQGSTQGRLDDFFK-VTGC 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 LTSAKRK 356
>gi|26335423|dbj|BAC31412.1| unnamed protein product [Mus musculus]
Length = 380
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YV DG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVLDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|196004300|ref|XP_002112017.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
gi|317376198|sp|B3RVF0.1|FEN1_TRIAD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190585916|gb|EDV25984.1| hypothetical protein TRIADDRAFT_24563 [Trichoplax adhaerens]
Length = 377
Score = 356 bits (914), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 165/308 (53%), Positives = 233/308 (75%), Gaps = 4/308 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGE TSHL G+F RTIR++E G+KP+YVFDG+PP LK ELA+R +R +A
Sbjct: 52 VLTNEAGETTSHLMGLFYRTIRMMENGIKPVYVFDGKPPRLKSGELARRQERREEAQKQA 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+EA + G+ ++I+KF++RTV++T +H ++ K+LLKLMGVPVV+AP EAE+QCAAL K+G+
Sbjct: 112 SEAEKEGDADNIDKFTRRTVRMTPEHCEEGKKLLKLMGVPVVQAPCEAESQCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA +EDMD+LTFG+ LRHL +RK+P+ EF + L+ELN +M+QFIDLCIL G
Sbjct: 172 VYATGTEDMDALTFGSNVMLRHLTFSEARKMPIQEFHLKNALQELNFSMEQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSI+G+G + A+ LI ++ SIE I++NI+ E++ +PE+WPY++AR LF P+V
Sbjct: 232 CDYCDSIKGVGPKRAVGLIEKYKSIEDIVKNISSEKFTVPENWPYKDARMLFLNPDVEKC 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E+ +++KW+ PD + L+ FLV E GF+ DR+ + +EKI A+ S+QGRL+SFF T
Sbjct: 292 ED-MELKWTEPDADELVKFLVEEKGFSEDRIRRGVEKISKARGTSTQGRLDSFF---TIT 347
Query: 301 SAPIKRKV 308
IKRK
Sbjct: 348 PGAIKRKT 355
>gi|62859561|ref|NP_001017005.1| flap endonuclease 1 [Xenopus (Silurana) tropicalis]
Length = 382
Score = 356 bits (913), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 169/308 (54%), Positives = 232/308 (75%), Gaps = 1/308 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L
Sbjct: 52 MLQNEDGETTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A EAG E+IEKF+KR VKVTKQHN++CK+LL LMGVP V+AP EAEA CAAL K+G+
Sbjct: 112 EAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLTLMGVPYVDAPCEAEATCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTFG P LRHL ++K+P+ EF + ++++++ ++ +QF+DLCIL G
Sbjct: 172 VYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC++IRGIG + A+ LIRQH SIE I++NI+ ++Y IPE+W ++EAR+LF EPEVV D
Sbjct: 232 SDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQLFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E ++KW PDEEGL+ F+ +E F+ DR+ +K+ + S+QGRL+ FFK +
Sbjct: 291 TESTELKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLSKNRQGSTQGRLDDFFKVTGSI 350
Query: 301 SAPIKRKV 308
S+ +++V
Sbjct: 351 SSTKRKEV 358
>gi|46138549|ref|XP_390965.1| hypothetical protein FG10789.1 [Gibberella zeae PH-1]
gi|408391605|gb|EKJ70977.1| hypothetical protein FPSE_08836 [Fusarium pseudograminearum CS3096]
Length = 395
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 172/314 (54%), Positives = 221/314 (70%), Gaps = 7/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN DC+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNADCQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMERKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HGS+E + +EN ++++Y IPEDWPY++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPSTALKMIRDHGSLEKVVEAMENDSKKKYVIPEDWPYKDARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKP+
Sbjct: 293 QADHPDCDFKWEKPDMEGLVKFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPI 352
Query: 298 ANT---SAPIKRKV 308
T A KRK+
Sbjct: 353 PKTEEEKAAHKRKL 366
>gi|74219985|dbj|BAE40572.1| unnamed protein product [Mus musculus]
Length = 380
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+E MD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEGMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|317376168|sp|B1H158.1|FEN1_XENTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|169642201|gb|AAI60482.1| flap structure specific endonuclease 1 [Xenopus (Silurana)
tropicalis]
Length = 382
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/308 (54%), Positives = 232/308 (75%), Gaps = 1/308 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L
Sbjct: 52 MLQNEDGETTSHLMGMFYRTIRMIEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A EAG E+IEKF+KR VKVTKQHN++CK+LL LMGVP V+AP EAEA CAAL K+G+
Sbjct: 112 EAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLTLMGVPYVDAPCEAEATCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTFG P LRHL ++K+P+ EF + ++++++ ++ +QF+DLCIL G
Sbjct: 172 VYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVMQDMGVSHEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC++IRGIG + A+ LIRQH SIE I++NI+ ++Y IPE+W ++EAR+LF EPEVV D
Sbjct: 232 SDYCETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENWLHKEARQLFLEPEVV-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E ++KW PDEEGL+ F+ +E F+ DR+ +K+ + S+QGRL+ FFK +
Sbjct: 291 TESTELKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSI 350
Query: 301 SAPIKRKV 308
S+ +++V
Sbjct: 351 SSTKRKEV 358
>gi|301781710|ref|XP_002926265.1| PREDICTED: flap endonuclease 1-like [Ailuropoda melanoleuca]
gi|281345366|gb|EFB20950.1| hypothetical protein PANDA_015901 [Ailuropoda melanoleuca]
Length = 380
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGVEEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|19115884|ref|NP_594972.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe 972h-]
gi|730469|sp|P39750.1|FEN1_SCHPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNA
repair protein rad2; AltName: Full=Flap
structure-specific endonuclease 1
gi|2408077|emb|CAB16282.1| FEN-1 endonuclease Rad2 [Schizosaccharomyces pombe]
gi|4456854|emb|CAB36991.1| RAD2 protein [Schizosaccharomyces pombe]
Length = 380
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 163/299 (54%), Positives = 221/299 (73%), Gaps = 1/299 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL GMF RT+R+++ G+KP +VFDG+PP LK ELAKR ++ A +D
Sbjct: 54 LMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E E G E +++F+KRTVKVT+QHND+ KRLL+LMG+P V AP EAEAQCAAL +SG+V
Sbjct: 114 ETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALARSGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E+ + K L L+++++QF+DLCIL GC
Sbjct: 174 YAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKALNGLDMSVEQFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+ IRG+G A++LIRQ+G+++ ++ +R +Y IPEDWPY++ARRLF + EV+ E
Sbjct: 234 DYCEPIRGVGPARAVELIRQYGTLDRFVKEADRSKYPIPEDWPYEDARRLFLDAEVLPGE 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KW +PD +G+I FLV E GFN DRV I +++ A QGRL+SFFKPV ++
Sbjct: 294 E-IELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSS 351
>gi|380015033|ref|XP_003691516.1| PREDICTED: flap endonuclease 1-like [Apis florea]
Length = 383
Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 168/307 (54%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL GMF RTIRL+E G+KP+Y+FDG+PP+LK ELAKR KR +A L
Sbjct: 53 LTSVDGETTSHLMGMFYRTIRLVEQGIKPVYIFDGKPPNLKGGELAKRAEKRDEAQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN EDIEKF++R VKVTK+H ++ K+LLKLMG+P ++AP EAEAQCAA+ K+G+V
Sbjct: 113 AAEEAGNAEDIEKFNRRLVKVTKEHAEEAKQLLKLMGIPYIDAPCEAEAQCAAMVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV EF K+LE L L+ D+FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHQDKVLEGLELSHDEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +SI+G+G + A++LI+ H ++E I+EN++ +++ IPEDW Y++AR LF++PE +TD
Sbjct: 233 DYTNSIKGVGPKRAIELIKTHRTLEKIVENLDTKKFPIPEDWNYKQARLLFQKPE-ITDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E + +KW PDEEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N S
Sbjct: 292 ETIDLKWIEPDEEGLVKYLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDTFFKVLPN-S 350
Query: 302 APIKRKV 308
P KRK+
Sbjct: 351 TPTKRKI 357
>gi|340966641|gb|EGS22148.1| hypothetical protein CTHT_0016650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 395
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 217/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+AGE TSHL GMF RT+R+++AG+KP+YVFDG+PP LK ELAKR+ ++ +A +DL
Sbjct: 53 LMNDAGETTSHLMGMFYRTLRMVDAGIKPLYVFDGKPPKLKSGELAKRFQRKQEAQEDLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFAEQRKEPIQEIHTDKVLEGLNMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALKLIR+HGS+E ++E I ++RY IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLDPIPKIGPSTALKLIREHGSLEKVVEFIQNDPKKRYTIPEDWPYQDARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ + KW PD EGL+ FLV E GF+ DRV ++++ + Q R+E FFK +
Sbjct: 293 QADDPECDFKWEKPDVEGLVQFLVKEKGFSEDRVRNGAQRLEKNLKGAQQARIEGFFKVI 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTEA 357
>gi|432089490|gb|ELK23431.1| Flap endonuclease 1 [Myotis davidii]
Length = 380
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 228/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMIENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 HQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF PEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLAPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P EE L+ F+ E F+ +R+ + ++ ++ S+QGRLE FFK V +
Sbjct: 291 PEAVELKWSEPKEEELVKFMCGEKQFSEERIRSGVRRLNKSRQGSTQGRLEDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|317374922|sp|Q013G9.2|FEN1_OSTTA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 389
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 180/309 (58%), Positives = 225/309 (72%), Gaps = 3/309 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGM RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A L
Sbjct: 54 LTNEAGEVTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKREEAEAALK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN+E++EK SKRTV+V+K+ + + +L +L+G+P EAP EAEA CAA+CK+G V
Sbjct: 114 AAREAGNQEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTF APR R+LM P S + PV+EF+ K + L LT DQFIDLCIL GC
Sbjct: 174 WAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY D+IRG+G +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D
Sbjct: 234 DYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGARELFKNPEVM-DV 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFKPVANT 300
+ + W APDEEGL+ FLV E F DRV +I KA + +SQ RLESFF P
Sbjct: 293 SGINLSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFFGPPKII 352
Query: 301 SAPI-KRKV 308
S+ I KRKV
Sbjct: 353 SSTIGKRKV 361
>gi|308806964|ref|XP_003080793.1| FEN-1 (ISS) [Ostreococcus tauri]
gi|116059254|emb|CAL54961.1| FEN-1 (ISS) [Ostreococcus tauri]
Length = 428
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 180/309 (58%), Positives = 225/309 (72%), Gaps = 3/309 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHLQGM RT R+LEAG+KP+YVFDG+PP +K ELAKR KR +A L
Sbjct: 93 LTNEAGEVTSHLQGMLMRTSRMLEAGIKPVYVFDGKPPTMKGGELAKRKDKREEAEAALK 152
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN+E++EK SKRTV+V+K+ + + +L +L+G+P EAP EAEA CAA+CK+G V
Sbjct: 153 AAREAGNQEEVEKLSKRTVRVSKEQSMEVMKLAQLLGIPAFEAPCEAEATCAAMCKAGLV 212
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTF APR R+LM P S + PV+EF+ K + L LT DQFIDLCIL GC
Sbjct: 213 WAVGTEDMDTLTFAAPRVARNLMAPKSAEKPVLEFDYEKTIAGLGLTADQFIDLCILCGC 272
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY D+IRG+G +TALKLI++HGSIE ILE I+ E+Y P+DW + AR LFK PEV+ D
Sbjct: 273 DYTDTIRGVGPKTALKLIKEHGSIEKILEAIDTEKYPPPKDWEFAGARELFKNPEVM-DV 331
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFKPVANT 300
+ + W APDEEGL+ FLV E F DRV +I KA + +SQ RLESFF P
Sbjct: 332 SGINLSWKAPDEEGLVEFLVKEKQFQEDRVRGVCARIRKARQGAASQNRLESFFGPPKII 391
Query: 301 SAPI-KRKV 308
S+ I KRKV
Sbjct: 392 SSTIGKRKV 400
>gi|320165003|gb|EFW41902.1| flap endonuclease 1-B [Capsaspora owczarzaki ATCC 30864]
Length = 388
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 164/293 (55%), Positives = 217/293 (74%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+AGE TSHL G F RTIR+LE G+KP+YVFDG+PP +K ELAKR ++R +A L
Sbjct: 53 LMNDAGETTSHLVGFFYRTIRMLENGIKPVYVFDGKPPVMKSGELAKRTARREEAQASLD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAG E +EKF +R VKVTK+HN++CKRLL LMGVP + AP EAEAQCAAL KSG V
Sbjct: 113 AATEAGESETMEKFQRRLVKVTKEHNEECKRLLTLMGVPYISAPCEAEAQCAALVKSGSV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A +EDMD+LTFG+ LRHL +RK+P+ EF + + LE L LTM+QF+DLCIL GC
Sbjct: 173 FAAGTEDMDALTFGSKVLLRHLTFSEARKMPIKEFNLDRALEGLKLTMEQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+SI+GIG A LI+++ +IE I++N++ E+Y +P +W + EAR LF EPE VT
Sbjct: 233 DYCESIKGIGPTRAYALIQEYKTIEEIIKNLDTEKYPLPANWAFAEARTLFLEPE-VTPG 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E+L +KW+APD EGL+ F+V E GF+ DR+ K+ K+ ++QGRL++FF
Sbjct: 292 EELDLKWTAPDVEGLVKFMVQEKGFSEDRIRNNAAKLVDLKSTATQGRLDNFF 344
>gi|308504826|ref|XP_003114596.1| CRE-CRN-1 protein [Caenorhabditis remanei]
gi|308258778|gb|EFP02731.1| CRE-CRN-1 protein [Caenorhabditis remanei]
Length = 382
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 160/293 (54%), Positives = 223/293 (76%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RTIR+++ G+KP+YVFDG+PPD+K EL KR +RA+A L
Sbjct: 53 LQSEDGETTSHLMGMFYRTIRMIDNGIKPVYVFDGKPPDMKSGELEKRSERRAEAEKALT 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ ++ EKF +R VKVTKQ N+D K+LL LMG+PVVEAP EAEAQCA L K+G+V
Sbjct: 113 EAKEKGDAKEAEKFERRLVKVTKQQNEDVKQLLGLMGIPVVEAPCEAEAQCAHLVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ A+EDMD+LTFG+ LRHL+ P S+KIP+ EF +A+ILEE+ LT ++FIDLCIL GC
Sbjct: 173 FGTATEDMDALTFGSCVLLRHLLAPESKKIPIKEFHLARILEEMKLTEEEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +IRG+G + A++LI Q+ +IETILENI+ +Y PEDWPY+ AR LF +P+ VT
Sbjct: 233 DYCGTIRGVGPKRAVELINQYKNIETILENIDLTKYPPPEDWPYKRARELFLQPD-VTKG 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E++++ W PD EG++ F+ + F+ +R+ A+ +++ ++N +QGR++SFF
Sbjct: 292 EEIELTWKEPDVEGIVRFMCGDKNFSEERIRSALTRMQKSRNAGTQGRIDSFF 344
>gi|340717150|ref|XP_003397050.1| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like [Bombus
terrestris]
Length = 381
Score = 353 bits (906), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 169/306 (55%), Positives = 228/306 (74%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PPDLK ELAKR +R + L
Sbjct: 53 LTSVHGETTSHLMGTFYRTIRLVEQGIKPVYVFDGKPPDLKGGELAKRDERRDETQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN +DIEKF++R VKVTK+H + K+LL+LMG+P ++AP EAEAQCAAL K+G+V
Sbjct: 113 AAEEAGNAKDIEKFNRRLVKVTKEHALETKQLLQLMGIPYIDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV EF K+LE+L L ++FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNILLRRLTFSEARKMPVQEFHFDKVLEDLGLNHNEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY SI+G+G + A++LI+ HGS+E I+EN++ +++ IPEDW Y+EAR LF+EPE VTD
Sbjct: 233 DYTSSIKGVGPKRAIELIKTHGSLEKIVENLDTKKFSIPEDWNYKEARLLFQEPE-VTDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E + +KW+ PDEEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N +
Sbjct: 292 ETINMKWTEPDEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPN 351
Query: 302 APIKRK 307
P KRK
Sbjct: 352 PP-KRK 356
>gi|148234716|ref|NP_001080984.1| flap endonuclease 1-B [Xenopus laevis]
gi|82071413|sp|P70054.1|FEN1B_XENLA RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B;
Short=xFEN-1b
gi|1549393|gb|AAB08478.1| XFEN1b [Xenopus laevis]
gi|213623174|gb|AAI69390.1| Flap endonuclease 1 [Xenopus laevis]
gi|213626408|gb|AAI69394.1| Flap endonuclease 1 [Xenopus laevis]
Length = 382
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 166/308 (53%), Positives = 230/308 (74%), Gaps = 1/308 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP +K ELAKR +RA+A L
Sbjct: 52 MLQNEEGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A EAG E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+
Sbjct: 112 EAAEEAGEVENIEKFNKRLVKVTKQHNEECKKLLSLMGIPYVDAPCEAEATCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTFG P LRHL ++K+P+ EF + ++ +++ + +QF+DLCIL G
Sbjct: 172 VYAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVFQDIGINHEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC++IRGIG + A+ LIRQH +IE I++NI+ ++Y IPE+W ++EAR+LF EPEV+ D
Sbjct: 232 SDYCETIRGIGPKRAIDLIRQHKTIEEIIDNIDLKKYPIPENWLHKEARQLFLEPEVI-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ ++KW+ PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK +
Sbjct: 291 ADITELKWTEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFKVTGSI 350
Query: 301 SAPIKRKV 308
S+ +++V
Sbjct: 351 SSTKRKEV 358
>gi|291239422|ref|XP_002739622.1| PREDICTED: flap structure-specific endonuclease 1-like
[Saccoglossus kowalevskii]
Length = 379
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 228/307 (74%), Gaps = 3/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE G+ TSHL GMF RTIR+++ G+KP+YVFDG+PPDLK EL+KR KR +A L
Sbjct: 52 VLTNEDGDTTSHLMGMFYRTIRMVDHGIKPLYVFDGKPPDLKSGELSKRAEKREEAEKAL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A E G E++ K+ +R VKVTK+HN++CK+LL MG+P ++AP EAEAQCA L K+G+
Sbjct: 112 AKAEEEGETENVNKYQRRLVKVTKEHNEECKKLLTFMGIPYLDAPGEAEAQCAELVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMDSLTFG+ +RH+ +RK+P E+ + IL EL L+ D+FIDLCIL G
Sbjct: 172 VYATATEDMDSLTFGSSTVVRHMTFSEARKMPCQEYNLNNILAELELSQDEFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCDSIRGIG + A+ LIRQH +IE ++ +++ ++Y +P+ W Y+EAR LFK+P V
Sbjct: 232 CDYCDSIRGIGPKRAIDLIRQHKTIEEVIAHLDSKKYTVPDGWLYKEARELFKKPNVTAG 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KW PDE+GLI+++ + GF DR+ +K+ A++ S+QGRL+SFF +A+
Sbjct: 292 VD-IELKWIDPDEDGLIDYMSKQKGFAEDRIKNGAKKLLKARHTSTQGRLDSFFSVMASP 350
Query: 301 SAPIKRK 307
S IKRK
Sbjct: 351 S--IKRK 355
>gi|17510005|ref|NP_491168.1| Protein CRN-1 [Caenorhabditis elegans]
gi|75023012|sp|Q9N3T2.1|FEN1_CAEEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Cell
death-related nuclease 1; AltName: Full=Flap
structure-specific endonuclease 1
gi|31747251|gb|AAP57297.1| cell death-related nuclease 1 [Caenorhabditis elegans]
gi|373220153|emb|CCD72553.1| Protein CRN-1 [Caenorhabditis elegans]
Length = 382
Score = 352 bits (904), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 217/293 (74%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GM RT+R+ E G+KP+YVFDG+PPD+K EL KR +RA+A L
Sbjct: 53 LQSEDGETTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALT 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ ++ EKF +R VKVTKQ ND+ KRLL LMG+PVVEAP EAEAQCA L K+G+V
Sbjct: 113 EAKEKGDVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ +EDMD+LTFG+ LRH + P ++KIP+ EF ++ LEE+ L++++FIDLCIL GC
Sbjct: 173 FGTVTEDMDALTFGSTVLLRHFLAPVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +IRG+G + A++LIRQH +IETILENI++ +Y PEDWPY+ AR LF PE VT
Sbjct: 233 DYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKYPPPEDWPYKRARELFLNPE-VTKP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E++++ W D EG+I FL E FN +R+ A+ K+K ++ +QGR++SFF
Sbjct: 292 EEVELTWKEADVEGVIQFLCGEKNFNEERIRNALAKLKTSRKSGTQGRIDSFF 344
>gi|358385848|gb|EHK23444.1| hypothetical protein TRIVIDRAFT_37094 [Trichoderma virens Gv29-8]
Length = 395
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 217/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N++GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNDSGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + K+LE LN+ DQF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMERDQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D + +G TALKLIR+HGS+E ++E I ++ +Y +PEDWPY++AR LF P+V
Sbjct: 233 DYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDPKKKYTLPEDWPYKDARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV
Sbjct: 293 QADDPLCDFKWDKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTDA 357
>gi|358394482|gb|EHK43875.1| hypothetical protein TRIATDRAFT_300264 [Trichoderma atroviride IMI
206040]
Length = 395
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/305 (54%), Positives = 218/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + ++LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDRVLEGLNMERKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV- 237
DY D + +G TALKLIR+HGS+E ++E I ++++Y +PEDWPY++AR LF P+V
Sbjct: 233 DYLDPVPKVGPTTALKLIREHGSLEKVVEAIEKDSKKKYTLPEDWPYKDARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FLV+E GF+ DRV A +++ S Q RLE FFKPV
Sbjct: 293 QADDPLCDFKWEKPDMEGLVTFLVTEKGFSEDRVRSAGARLEKNLKSSQQARLEGFFKPV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTDA 357
>gi|402080846|gb|EJT75991.1| DNA-repair protein rad2 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 394
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 219/303 (72%), Gaps = 3/303 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L
Sbjct: 52 VLTNEDGQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G E++EKFS+RTV VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL ++G+
Sbjct: 112 EEARETGTAEEVEKFSRRTVHVTREHNEECRRLLKLMGIPYIVAPTEAEAQCAALARAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A ASEDMD+L F +P LRHL RK P++E V K+LE LN+ QF+DLCIL G
Sbjct: 172 VFAAASEDMDTLCFDSPVLLRHLTFSEQRKEPILEIHVDKVLEGLNMERKQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEV- 237
CDY D I +G TALKLIR+HGS+ETI+E + + +Y +P+DWP+++AR LF P+V
Sbjct: 232 CDYLDPIPKVGPTTALKLIREHGSLETIVEKMKKGDLKYTVPDDWPFEDARDLFFNPDVR 291
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW PD +GLINFLV+E GF+ DRV +++ S Q RLE FFKPV
Sbjct: 292 PADHPDCDFKWEKPDIDGLINFLVTEKGFSEDRVRSGAARLEKNLKTSQQQRLEGFFKPV 351
Query: 298 ANT 300
A T
Sbjct: 352 ART 354
>gi|195123149|ref|XP_002006071.1| GI18754 [Drosophila mojavensis]
gi|317374891|sp|B4KNM1.1|FEN1_DROMO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193911139|gb|EDW10006.1| GI18754 [Drosophila mojavensis]
Length = 388
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/304 (55%), Positives = 224/304 (73%), Gaps = 4/304 (1%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKAGELAKRAERREEAEKALKVATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G++ +IEKF++R V+VTK+H+++ K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDEAEIEKFNRRLVRVTKEHSNEAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYCDS
Sbjct: 178 EDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCDS 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI+ + IETILENI+ +Y +PE+W YQ AR LF EPE VTD + +
Sbjct: 238 IKGIGPKRAIELIKTYRDIETILENIDTSKYIVPENWNYQRARELFVEPE-VTDASTIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAP 303
KW+APDE+GL+ FL + FN +RV K+ +K +Q RL+SFFK + N +A
Sbjct: 297 KWTAPDEDGLVQFLCGDRQFNEERVRNGARKLLKSKQSQTQVRLDSFFKALPSSPNATAA 356
Query: 304 IKRK 307
KRK
Sbjct: 357 AKRK 360
>gi|322708426|gb|EFZ00004.1| DNA-repair protein rad2 [Metarhizium anisopliae ARSEF 23]
Length = 395
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 219/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N++GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNDSGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERSQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV- 237
DY D + +G TALKLIR+HG++E +++ I ++++Y +PEDWPY++AR LF EP+V
Sbjct: 233 DYLDPVPKVGPTTALKLIREHGTLENVVDAIEKDSKKKYTLPEDWPYKDARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FLV+E GF+ DRV A +++ S Q RLE FFKP+
Sbjct: 293 KADDPLCDFKWDKPDVEGLVTFLVTEKGFSEDRVRGAAARLEKNLKTSQQARLEGFFKPI 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTDA 357
>gi|302900157|ref|XP_003048206.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|317374915|sp|C7Z125.1|FEN1_NECH7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256729138|gb|EEU42493.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 395
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 166/305 (54%), Positives = 218/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N++GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNDSGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAQAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + K+LE L + QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNSPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E I+E + ++ +Y +PEDWPY++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPTTALKLIRDHGSLEKIVEAMEKDPKKKYVLPEDWPYKDARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ + +KW PD EGL+ FLV+E GF+ DRV +++ S Q RLE FFKPV
Sbjct: 293 KADDPECDVKWEKPDMEGLVQFLVTEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKPV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTDA 357
>gi|387916082|gb|AFK11650.1| Flap endonuclease 1-B [Callorhinchus milii]
Length = 382
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 160/307 (52%), Positives = 227/307 (73%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L E+GE TSHL GMF RTIR++E+G+KP+YVFDG+PPD+K ELAKR +R++A L
Sbjct: 52 VLQTESGETTSHLMGMFYRTIRMVESGIKPVYVFDGKPPDMKSGELAKRNERRSEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG+ E++E+F+KR VKVTKQHN++CK LL LMG+P +EAP EAEA CAAL KSG+
Sbjct: 112 AQAQEAGDSENVERFNKRLVKVTKQHNEECKTLLTLMGIPYLEAPCEAEASCAALVKSGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY A+EDMD L FG LR + ++K+P+ EF + KIL+E L+ ++FIDLCIL G
Sbjct: 172 VYGTATEDMDGLAFGTTILLRRMTASEAKKLPIQEFHLNKILQETGLSQEEFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC++IRGIG + A++LIRQH IE +L++I+ +Y +P DW Y +AR LF P+VV +
Sbjct: 232 CDYCETIRGIGPKRAIELIRQHRCIEEVLKHIDGNKYTVPGDWAYSQARSLFLTPDVV-N 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KW+ P+E+ L++FL + GF+ DR+ +K+ ++ S+QGRL+ FFK V +
Sbjct: 291 VDDVELKWTEPEEDKLVSFLCEDKGFSEDRIRNGAKKLVRSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 LTSAKRK 356
>gi|389637772|ref|XP_003716519.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
gi|317374924|sp|A4QS18.2|FEN1_MAGO7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|351642338|gb|EHA50200.1| DNA-repair protein rad2 [Magnaporthe oryzae 70-15]
Length = 394
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 164/304 (53%), Positives = 219/304 (72%), Gaps = 3/304 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L
Sbjct: 52 MLTNEDGQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VT++HN++C++LLKLMG+P + AP+EAEAQCA L ++G+
Sbjct: 112 EEARETGTAEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A ASEDMD+L F +P LRHL +RK P+ E V K+LE L++ QF+DLCIL G
Sbjct: 172 VFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEV- 237
CDY D I +G TALKLIR+HGS+ETI+E + + +Y +PEDWP+++AR LF P V
Sbjct: 232 CDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELKYTVPEDWPFEDARDLFFNPAVH 291
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW PD EGL+ +LV+E GF+ DRV +++ A S Q RLE FFKPV
Sbjct: 292 PADHPDCNFKWEKPDVEGLVKYLVTEKGFSEDRVRPGALRLEKALGTSQQQRLEGFFKPV 351
Query: 298 ANTS 301
A T+
Sbjct: 352 ARTA 355
>gi|317374921|sp|B6QT52.2|FEN1_PENMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 170/313 (54%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +EAGE TSHL GMF RT+R+++ G+KP+YVFDG PP +K ELAKR +++ +A +
Sbjct: 53 LMSEAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P++E + K LE L + M QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IP+DWPYQEAR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ Q KW +PD EGL+ FLV++ GF+ DRV ++ + Q RLE FFKPV
Sbjct: 293 KADDPQCDFKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 AKTDAEKASMKRK 365
>gi|212544870|ref|XP_002152589.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
gi|210065558|gb|EEA19652.1| Flap endonuclease Rad27, putative [Talaromyces marneffei ATCC
18224]
Length = 411
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 170/313 (54%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +EAGE TSHL GMF RT+R+++ G+KP+YVFDG PP +K ELAKR +++ +A +
Sbjct: 69 LMSEAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKMKGGELAKRSARKREAHEAHE 128
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 129 EAKETGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 188
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P++E + K LE L + M QFIDLCIL GC
Sbjct: 189 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLDKALEGLGMDMAQFIDLCILLGC 248
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IP+DWPYQEAR LF P+V
Sbjct: 249 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPDDWPYQEARELFFNPDVR 308
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ Q KW +PD EGL+ FLV++ GF+ DRV ++ + Q RLE FFKPV
Sbjct: 309 KADDPQCDFKWESPDVEGLVKFLVTDKGFSEDRVRNGAARLAKNLKTAQQSRLEGFFKPV 368
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 369 AKTDAEKASMKRK 381
>gi|317376190|sp|D3BN56.1|FEN1_POLPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|281203217|gb|EFA77418.1| XPG [Polysphondylium pallidum PN500]
Length = 388
Score = 349 bits (896), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 158/293 (53%), Positives = 215/293 (73%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSHLQGMF RTI+L+ G+KPIYVFDG+ P LK ELAKRY++R +A L
Sbjct: 54 LMNANGETTSHLQGMFYRTIKLMTRGIKPIYVFDGKAPVLKSGELAKRYARRKEAEQQLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E GN ED++KF KRT+ +++ N++CK+LL+LMGVP+V+AP EAEAQCA LCK G+
Sbjct: 114 EANEVGNSEDVQKFQKRTISASRKQNEECKKLLELMGVPIVQAPCEAEAQCAELCKGGKA 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMDSLT G LR L +RK+P+ME E+ K+L+ L+LT DQF+DLCIL GC
Sbjct: 174 WATGSEDMDSLTLGTTILLRRLTFSEARKLPIMEIELEKVLDGLDLTHDQFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+I+GIG + + +I +H +I+T+++NI+R + IPE +PY+E R LFK P+V+ +
Sbjct: 234 DYCDTIKGIGPKKSFDMITKHKNIQTVIQNIDRTKNPIPESFPYEEVRELFKNPDVIKCQ 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ +I W PD +GLI +LV E GFN RV + IEK+K K+ Q R+++FF
Sbjct: 294 DLPEIVWKEPDVDGLIKYLVGEMGFNETRVQQGIEKLKKYKDTGVQTRIDTFF 346
>gi|350287839|gb|EGZ69075.1| DNA-repair protein rad2, partial [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/303 (55%), Positives = 215/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 49 LMNEAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 109 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKV 168
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GC
Sbjct: 169 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGC 228
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V
Sbjct: 229 DYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVR 288
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK +
Sbjct: 289 PADDPLCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKIL 348
Query: 298 ANT 300
T
Sbjct: 349 PKT 351
>gi|336467513|gb|EGO55677.1| DNA-repair protein rad2 [Neurospora tetrasperma FGSC 2508]
Length = 396
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/303 (55%), Positives = 215/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 55 LMNEAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 115 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIVAPTEAEAQCAVLARAGKV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GC
Sbjct: 175 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGC 234
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V
Sbjct: 235 DYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVR 294
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK +
Sbjct: 295 PADDPLCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKIL 354
Query: 298 ANT 300
T
Sbjct: 355 PKT 357
>gi|156553807|ref|XP_001603401.1| PREDICTED: flap endonuclease 1-like [Nasonia vitripennis]
Length = 381
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 166/307 (54%), Positives = 226/307 (73%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PP LK ELAKR +R +A L
Sbjct: 53 LTSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPTLKGGELAKRAERREEAQKQLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN ED++KF++R VKVTKQH ++ K+LL LMG+P ++AP EAEAQCAA+ KSG+V
Sbjct: 113 AAEEAGNVEDVDKFNRRLVKVTKQHGEEAKQLLTLMGIPFIDAPCEAEAQCAAMVKSGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG LR L +RK+P+ E + K+L L LT D+FIDLCI+ GC
Sbjct: 173 YATATEDMDALTFGCNVLLRRLTFSEARKMPIQEIQYDKVLNGLGLTRDEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY SI+G+G + A++LI+ H S+E ILEN++ +++ +PEDW Y++AR+LF EPE V D
Sbjct: 233 DYTTSIKGVGPKRAIELIKNHKSLEKILENLDTKKFPVPEDWNYKDARQLFIEPE-VKDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E++ +KW+ PDEEGL+ FL + FN DRV +K+ A++ +QGR++SFFK + +T+
Sbjct: 292 EEVDLKWNDPDEEGLVKFLCGDKQFNEDRVRNGAKKLLKARHTGTQGRIDSFFKVLPSTN 351
Query: 302 A-PIKRK 307
P KRK
Sbjct: 352 GTPAKRK 358
>gi|345569735|gb|EGX52564.1| hypothetical protein AOL_s00007g552 [Arthrobotrys oligospora ATCC
24927]
Length = 390
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/310 (53%), Positives = 223/310 (71%), Gaps = 4/310 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG+PP LK ELAKR +++ +A +
Sbjct: 52 VLTSETGETTSHLMGMFYRTLRMVDNGIKPLYVFDGKPPTLKSGELAKRTARKFEAQEAH 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G E+IEKFS+RTV+ T++HN++CKRLLKLMG+P ++AP EAEAQCA L KSG+
Sbjct: 112 EEAKEVGTAEEIEKFSRRTVRATREHNEECKRLLKLMGIPYLDAPCEAEAQCAILAKSGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+L F P LRHL RK P+ E + +++ L++T +QFIDLCIL G
Sbjct: 172 VYAAASEDMDTLCFETPILLRHLTFSEQRKQPIQEIHLDRVMAGLDMTREQFIDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+I +G TALKLIRQ+ SIE ++EN+++++Y++P+ +PYQ+AR L PEVV
Sbjct: 232 CDYCDTIPKVGPTTALKLIRQYKSIEGVIENLDKDKYKVPDYFPYQDARELLMNPEVVPA 291
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+E KW APD EGL++FLV GFN DRV ++ + + Q RLE FFK + T
Sbjct: 292 DE-CDFKWDAPDTEGLVDFLVGGKGFNEDRVRSGAARLSKNQTTAQQSRLEGFFKVIPKT 350
Query: 301 S---APIKRK 307
A +KRK
Sbjct: 351 EEELANLKRK 360
>gi|407916553|gb|EKG09919.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 392
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/311 (53%), Positives = 223/311 (71%), Gaps = 5/311 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP++VFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLFVFDGAPPKLKSGELAKRFQRKSEAQEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P+ E + K+LE L + +QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDKVLEGLEMEREQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI-NRERYQIPEDWPYQEARRLFKEPEV-VT 239
DY D I+G+G TALKL+R+H ++E +++ + +Y IPEDWPYQ+AR LF EP+V
Sbjct: 233 DYLDPIKGVGPSTALKLVREHKNLEGVVKFMQGNSKYTIPEDWPYQDARLLFLEPDVHPA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
D + + KW APD +GLI FLV E GFN DRV ++++ + Q RLE FFKPV
Sbjct: 293 DHPECEFKWDAPDVDGLIKFLVEEKGFNEDRVRSGAQRLQKNIKSAQQSRLEGFFKPVPK 352
Query: 300 TS---APIKRK 307
T+ A +KRK
Sbjct: 353 TAEEQANLKRK 363
>gi|224050601|ref|XP_002192880.1| PREDICTED: flap endonuclease 1 [Taeniopygia guttata]
Length = 386
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMVENGIKPVYVFDGKPPQLKSGELAKRTERRAEAEKHL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG +E+IEK+SKR VKVT QH +CK+LL LMG+P VEAP EAEA CAAL K+G+
Sbjct: 112 QEAQEAGEEENIEKYSKRLVKVTPQHTQECKKLLTLMGIPYVEAPGEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + +IL++L LT +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASETKKLPIQEFHLNRILQDLQLTWEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC SIRGIG + A++LIR+H SIE I++ ++ ++Y +PE+W ++EA++LF EP+V+ D
Sbjct: 232 CDYCASIRGIGPKRAVELIREHKSIERIVQQLDTKKYPLPENWLHREAQKLFLEPDVI-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KWS PDEE L+ F+ E FN +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PDAVELKWSEPDEEQLVQFMCGEKQFNEERIRNGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
KRK
Sbjct: 350 ITSAKRK 356
>gi|330797354|ref|XP_003286726.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
gi|325083324|gb|EGC36780.1| hypothetical protein DICPUDRAFT_31355 [Dictyostelium purpureum]
Length = 383
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 217/293 (74%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHLQGMF RTI+L+ G+KPIYVFDG+PP LK ELAKR +KR +ATD L
Sbjct: 54 LTNQLGETTSHLQGMFYRTIKLISKGIKPIYVFDGKPPTLKSGELAKRQAKRKEATDSLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED++KF+KRT+ V+++ N++C +LL LMGVPVV+AP EAEAQCA + KSG+
Sbjct: 114 EATEVGTSEDVQKFAKRTISVSRKQNEECIKLLTLMGVPVVKAPCEAEAQCAEIVKSGKA 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMDSLT G+ LR L ++K+P++EFE+ +LE L LT ++FIDL IL GC
Sbjct: 174 WATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELPSVLEGLGLTYEEFIDLGILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG + A +LI++H ++E I++++++ +Y IPE +PYQE R LFK P+V+ +
Sbjct: 234 DYCDSIKGIGPKRAFELIQKHKTLEEIIKHLDKSKYPIPEFFPYQEVRELFKHPDVIPGD 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ +W PD EGL FLV E GF+ RV + IEK+K KN S Q R++SF
Sbjct: 294 QLPAFQWKDPDVEGLNEFLVKEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFI 346
>gi|340518918|gb|EGR49158.1| Rad27p/FEN-1 endonuclease-like protein [Trichoderma reesei QM6a]
Length = 395
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 217/305 (71%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N++GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNDSGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + K+LE LN+ +QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIRLDKVLEGLNMEREQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E I ++ +Y +PEDWPY++AR LF P+V
Sbjct: 233 DYLDPIPKVGPTTALKLIREHGTLEKVVEAIEKDPKKKYTLPEDWPYKDARELFFHPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD +GL+ FLV+E GF+ DRV +++ S Q RLE FFKPV
Sbjct: 293 PADDPLCDFKWDKPDIDGLVQFLVTEKGFSEDRVRSGGARLEKNLKNSQQARLEGFFKPV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTEA 357
>gi|378733116|gb|EHY59575.1| flap endonuclease 1 [Exophiala dermatitidis NIH/UT8656]
Length = 395
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 217/303 (71%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++ +A +
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKNEANEQAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVEKFSRRTVRVTREHNEECRRLLKLMGIPYIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLDKTLEGLGMDRTQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEVV 238
DY D I +G TALKLIR+HG++E + +EN ++RY +PEDWPY++AR LF P+V
Sbjct: 233 DYVDPIPKVGPNTALKLIREHGTLEKVVEFIENDPKKRYSLPEDWPYKDARELFLHPDVR 292
Query: 239 T-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ D+ + KW APD EGL+ FLV+E GFN DRV A +K++ + Q RLE FFK V
Sbjct: 293 SADDPECDFKWEAPDVEGLVQFLVNEKGFNEDRVRNAAQKLQKNVKTAQQSRLEGFFKAV 352
Query: 298 ANT 300
T
Sbjct: 353 PKT 355
>gi|350416440|ref|XP_003490949.1| PREDICTED: flap endonuclease 1-like [Bombus impatiens]
Length = 381
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/306 (54%), Positives = 227/306 (74%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R + L
Sbjct: 53 LTSVNGETTSHLMGTFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDETQKLLR 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAGN EDIEKF++R VKVTK+H + K+LL+LMG+P ++AP EAEAQCAAL K+G+V
Sbjct: 113 AAEEAGNAEDIEKFNRRLVKVTKEHAKEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV EF K+L++L L D+FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNVLLRRLTFSEARKMPVQEFHFDKVLKDLGLNHDEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY SI+G+G + A++LI+ H S+E I+EN++ +++ IPEDW Y+EAR LF+EPE VTD
Sbjct: 233 DYTSSIKGVGPKRAIELIKTHRSLEKIVENLDTKKFPIPEDWNYKEARLLFQEPE-VTDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E + +KW+ P+EEGL+ +L + FN +RV +K+ A+N S+QGRL++FFK + N +
Sbjct: 292 ETIDLKWTEPNEEGLVKYLCGDKQFNEERVRNGAKKLYKARNTSTQGRLDTFFKVLPNPN 351
Query: 302 APIKRK 307
P KRK
Sbjct: 352 -PQKRK 356
>gi|307173481|gb|EFN64391.1| Flap endonuclease 1-B [Camponotus floridanus]
Length = 382
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/308 (54%), Positives = 225/308 (73%), Gaps = 2/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT GE TSHL G F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R +A L
Sbjct: 53 LTTVDGETTSHLMGTFHRTIRLVEQGIKPVYVFDGKPPNLKSGELAKRAERRDEAQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN E I+KFS+R VKVTK H D+ K+LL+LMG+P ++AP EAEAQCAAL K+G+V
Sbjct: 113 AAEEDGNVEAIDKFSRRLVKVTKNHADEAKQLLQLMGIPYIDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV E + K+L L L D+FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCDILLRRLTLSEARKLPVQEIHMDKVLTGLELNHDEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY SI+G+G + A++LI+ + S++ I+ENI+ ++Y IPE+W Y+EAR LF+EPEV +
Sbjct: 233 DYTGSIKGVGPKRAIELIKNYRSLDKIIENIDTKKYPIPENWNYKEARLLFQEPEVA-NA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E +Q+KWS PDEEGL+ FL S+ FN +RV +K+ A+N S+QGRL+SFFK + S
Sbjct: 292 EDIQLKWSEPDEEGLVKFLCSDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKVLPTKS 351
Query: 302 API-KRKV 308
+P KRK+
Sbjct: 352 SPTPKRKI 359
>gi|164426998|ref|XP_001728355.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
gi|157071561|gb|EDO65264.1| DNA-repair protein rad2 [Neurospora crassa OR74A]
Length = 396
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/303 (55%), Positives = 215/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 55 LMNEAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 115 EAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GC
Sbjct: 175 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGC 234
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V
Sbjct: 235 DYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARTLFFEPDVR 294
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK +
Sbjct: 295 PADDPLCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKIL 354
Query: 298 ANT 300
T
Sbjct: 355 PKT 357
>gi|317374923|sp|A7UW97.2|FEN1_NEUCR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 394
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/303 (55%), Positives = 215/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNEAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K+LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFNAPILLRHLTFSEQRKEPIQEIHLEKVLEGLGMERKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGTLEKVVEWMKADPKGRYQIPEDWPFEDARTLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGLI FLV E GF+ DRV A K++ S Q R+E FFK +
Sbjct: 293 PADDPLCDFKWDKPDIEGLIQFLVHEKGFSEDRVRSAGTKLEKNMKTSQQARIEGFFKIL 352
Query: 298 ANT 300
T
Sbjct: 353 PKT 355
>gi|729476|sp|P39749.1|FEN1_MOUSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|499649|gb|AAC37664.1| endonuclease-1 [Mus musculus]
Length = 378
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 4/307 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 109
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 110 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 169
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 170 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 229
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D
Sbjct: 230 SDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-D 288
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 289 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 347
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 348 LSSAKRK 354
>gi|213404252|ref|XP_002172898.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
gi|317376192|sp|B6JYI7.1|FEN1_SCHJY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212000945|gb|EEB06605.1| DNA-repair protein rad2 [Schizosaccharomyces japonicus yFS275]
Length = 377
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 164/299 (54%), Positives = 222/299 (74%), Gaps = 1/299 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK ELAKR S++ A ++
Sbjct: 54 LMNDQGETTSHLMGMFYRTLRMVDNGLKPCYVFDGKPPTLKSGELAKRASRQQKAREERE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E ++KF+KRTV+VT+QHND+ K+LL+LMG+P V AP EAEAQCAAL ++G+V
Sbjct: 114 EAKEVGTAEMVDKFAKRTVRVTRQHNDEAKKLLELMGIPYVNAPCEAEAQCAALARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD++ F AP LRHL RK P+ E+ K +E LN T++QF+DLCIL GC
Sbjct: 174 YAAASEDMDTMCFQAPILLRHLTFSEQRKEPISEYSFEKTIEGLNFTIEQFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD IRG+G A++LIRQHG+++ +++ +++++ IPEDWPYQ+ARRLF E E V +
Sbjct: 234 DYCDPIRGVGPARAVELIRQHGNLDNFVKDADKKKFPIPEDWPYQDARRLFLEAE-VQEA 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +++KW APDE+G+I FLV E GFN DRV I ++ A QGRL+SFFK + +T
Sbjct: 293 KDIELKWRAPDEQGIIKFLVEEKGFNEDRVRVGINRLVKASKTIPQGRLDSFFKVLPST 351
>gi|410974093|ref|XP_003993482.1| PREDICTED: flap endonuclease 1 [Felis catus]
Length = 380
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYSVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|148230426|ref|NP_001080960.1| flap endonuclease 1-A [Xenopus laevis]
gi|82071385|sp|P70040.1|FEN1A_XENLA RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A;
Short=xFEN-1a
gi|1490870|gb|AAB06176.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|4106358|gb|AAD02814.1| flap endonuclease 1 [Xenopus laevis]
gi|213623454|gb|AAI69765.1| 5' nuclease xFEN1a [Xenopus laevis]
gi|213625072|gb|AAI69761.1| 5' nuclease xFEN1a [Xenopus laevis]
Length = 382
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 228/306 (74%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L
Sbjct: 53 LQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAG E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+V
Sbjct: 113 AAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G
Sbjct: 173 YAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGS 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC++IRGIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D
Sbjct: 233 DYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DT 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ ++KW PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK V +
Sbjct: 292 DITELKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSV 350
Query: 302 APIKRK 307
+ KRK
Sbjct: 351 SSTKRK 356
>gi|2674207|gb|AAB88707.1| flap endonuclease 1 [Xenopus laevis]
gi|115528353|gb|AAI24978.1| Fen1-A protein [Xenopus laevis]
Length = 382
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 228/306 (74%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP +K ELAKR +RA+A L
Sbjct: 53 LQNEEGETTSHLMGMFYRTIRMVEHGIKPVYVFDGKPPQMKSGELAKRSERRAEAEKLLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAG E+IEKF+KR VKVTKQHN++CK+LL LMG+P V+AP EAEA CAAL K+G+V
Sbjct: 113 AAEEAGEVENIEKFTKRLVKVTKQHNEECKKLLTLMGIPYVDAPCEAEATCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG P LRHL ++K+P+ EF + ++++++ +T +QF+DLCIL G
Sbjct: 173 YAAATEDMDALTFGTPVLLRHLTASEAKKLPIQEFHLNRVIQDIGITHEQFVDLCILLGS 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC++IRGIG + A+ LIRQH +I+ I++NI+ ++Y +PE+W ++EA+ LF EPEVV D
Sbjct: 233 DYCETIRGIGPKRAIDLIRQHKTIDEIIDNIDLKKYPVPENWLHKEAKHLFLEPEVV-DT 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ ++KW PDEEGL+ F+ E F+ DR+ +K+ + S+QGRL+ FFK V +
Sbjct: 292 DITELKWIEPDEEGLVAFMCGEKQFSEDRIRNGAKKLAKNRQGSTQGRLDDFFK-VTGSV 350
Query: 302 APIKRK 307
+ KRK
Sbjct: 351 SSTKRK 356
>gi|311247499|ref|XP_003122675.1| PREDICTED: flap endonuclease 1-like isoform 1 [Sus scrofa]
Length = 380
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PEAVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|311247497|ref|XP_003122676.1| PREDICTED: flap endonuclease 1-like isoform 2 [Sus scrofa]
Length = 393
Score = 347 bits (889), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 65 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 124
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+
Sbjct: 125 QQAQAAGAGEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGK 184
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 185 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 244
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 245 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 303
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 304 PEAVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 362
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 363 LSSAKRK 369
>gi|413932542|gb|AFW67093.1| hypothetical protein ZEAMMB73_718764 [Zea mays]
Length = 294
Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 161/216 (74%), Positives = 189/216 (87%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGE+TSHLQGM RTIR+LEAG+KP++VFDG+PP++KK+ELAKR KR DA DL
Sbjct: 53 LLTNEAGEITSHLQGMLNRTIRMLEAGIKPVFVFDGEPPEMKKKELAKRSLKRDDAIKDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G++ IEKFSKRTVKVT +HNDDCKRLL+LMGVPVVEAP EAEAQCAALC++ Q
Sbjct: 113 NRAMEIGDENAIEKFSKRTVKVTGRHNDDCKRLLRLMGVPVVEAPGEAEAQCAALCENHQ 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYAVASEDMD+LTFGA RFLRHL D +K PV EF+V+K+LEEL LTMDQFIDLCILSG
Sbjct: 173 VYAVASEDMDTLTFGARRFLRHLTDLGYKKSPVTEFDVSKVLEELGLTMDQFIDLCILSG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 216
CDYC++IRGIGGQ ALKLIRQHG IE +L+N+N+ R
Sbjct: 233 CDYCENIRGIGGQRALKLIRQHGCIEEVLQNLNQTR 268
>gi|332376861|gb|AEE63570.1| unknown [Dendroctonus ponderosae]
Length = 380
Score = 346 bits (888), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 223/307 (72%), Gaps = 3/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT GE TSHL G F RTIRLLE G+KP+YVFDG+PP++K EL KR KRA+A L
Sbjct: 53 LTTADGEPTSHLVGTFYRTIRLLEHGIKPVYVFDGKPPEMKGGELNKRMEKRAEAQKALD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+EAG++ +++KF++R VKVT+ H D+ K LL+LMGVP +EAP EAEAQCAA+ K+G++
Sbjct: 113 KAMEAGDQAEVDKFNRRLVKVTRHHADEAKELLRLMGVPYIEAPCEAEAQCAAMVKAGKI 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+P+ E + +L+ELNL+ +FID CIL GC
Sbjct: 173 YATATEDMDALTFGSDIVLRHLTFSEARKMPIQEIHLKIVLQELNLSQTEFIDFCILMGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY DSIRGIG + +++LI+ H SIE ILENI++ +Y PEDW Y+ AR LF +PE ++D
Sbjct: 233 DYTDSIRGIGPKKSIELIKNHRSIEKILENIDKSKYPPPEDWNYEGARGLFVKPE-ISDP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +++KW PDEEG++ FL F+ DRV I+K++ A+ S+Q RL+ FF + T
Sbjct: 292 DSIELKWGEPDEEGMVKFLCGHRQFSEDRVRNGIKKLQKARGTSTQARLDGFFTVLGTT- 350
Query: 302 APIKRKV 308
P KRK
Sbjct: 351 -PAKRKA 356
>gi|13506617|gb|AAK01853.1| flap endonuclease-1 [Mus musculus]
Length = 378
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 229/307 (74%), Gaps = 4/307 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TS L GMF RTIR+ E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 109
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 110 QQAQEAGMEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGK 169
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF ++++L+EL L +QF+DLCIL G
Sbjct: 170 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLG 229
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEVV D
Sbjct: 230 SDYCESIRGIGAKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVV-D 288
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FF V +
Sbjct: 289 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFN-VTGS 347
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 348 LSSAKRK 354
>gi|320036635|gb|EFW18574.1| flap endonuclease [Coccidioides posadasii str. Silveira]
gi|392864029|gb|EAS35174.2| flap endonuclease 1 [Coccidioides immitis RS]
Length = 395
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 53 LMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + ++LE L + QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HGS+E + +EN +++Y IPEDWPY++AR LF EP+V
Sbjct: 233 DYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW +PD EGL+ FLV GF+ DRV +++ + Q RLE FFKPV
Sbjct: 293 PADHPECDFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 AKTEEEKASLKRK 365
>gi|296218462|ref|XP_002755459.1| PREDICTED: flap endonuclease 1 [Callithrix jacchus]
Length = 380
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CKRLL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKRLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL S+K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|367031946|ref|XP_003665256.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
gi|347012527|gb|AEO60011.1| hypothetical protein MYCTH_2308790 [Myceliophthora thermophila ATCC
42464]
Length = 395
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 219/314 (69%), Gaps = 7/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+R+ ++ +AT+ L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +C+RLLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTSEDVEKFSRRTVRVTKEHNAECQRLLKLMGVPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E V+K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDAPILLRHLTFSEQRKEPIQEIHVSKVLEGLNMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HGS+E ++E N + RY +P+DWP+++AR LF P+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKGRYTVPDDWPFEDARELFFSPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FLV E GF+ DRV +++ S Q R+E FFK +
Sbjct: 293 QADDPLCDFKWEKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQSRIEGFFKVL 352
Query: 298 ANT---SAPIKRKV 308
T A KRK+
Sbjct: 353 PKTEEEKAAHKRKL 366
>gi|317376210|sp|C4JDR3.2|FEN1_UNCRE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 53 LMNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTTEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYINAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L + F+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E N +++Y IP+DWPY++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD EGL+ FLV GF+ DRV +++ + Q RLE FFKPV
Sbjct: 293 PADHPECDFKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 AKTDEEKASLKRK 365
>gi|303312977|ref|XP_003066500.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106162|gb|EER24355.1| DNA-repair protein Rad2, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 359
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 17 LMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKETGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + ++LE L + QF+DLCIL GC
Sbjct: 137 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HGS+E + +EN +++Y IPEDWPY++AR LF EP+V
Sbjct: 197 DYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQARDLFFEPDVR 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW +PD EGL+ FLV GF+ DRV +++ + Q RLE FFKPV
Sbjct: 257 PADHPECDFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPV 316
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 317 AKTEEEKASLKRK 329
>gi|406865692|gb|EKD18733.1| DNA-repair protein rad2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 460
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/308 (53%), Positives = 212/308 (68%), Gaps = 3/308 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE GE TSHL GMF RT+R+++ G+KPIYVFDG PP LK ELAKR+ ++A AT+ L
Sbjct: 118 MLTNEDGETTSHLMGMFYRTLRIVDNGIKPIYVFDGAPPKLKSGELAKRFQRKATATEGL 177
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VT++HN +C+RLLK MG+P + AP+EAEAQCA L ++ +
Sbjct: 178 EEAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKCMGIPYIIAPTEAEAQCAVLARADK 237
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+L F AP LRHL RK P+ E + K+LE L + QF+DLCIL G
Sbjct: 238 VYAAASEDMDTLCFDAPVLLRHLTFSEQRKEPIQEIFLPKVLEGLGMDRAQFVDLCILLG 297
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVV 238
CDY D I +G ALK+IR++G+IE + + + +Y IPEDWPY++AR LF P+V
Sbjct: 298 CDYLDPIPKVGPNAALKIIREYGTIEKFVAAVEAGKAKYSIPEDWPYKDARDLFFNPDVT 357
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD +GLI FLV E GF+ DRV +++ S Q RLE FFKP+
Sbjct: 358 PADHADCDFKWEAPDVDGLIKFLVEEKGFSEDRVRSGATRLQKNLKSSQQARLEGFFKPI 417
Query: 298 ANTSAPIK 305
T A +K
Sbjct: 418 PKTEAELK 425
>gi|242813984|ref|XP_002486279.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
gi|218714618|gb|EED14041.1| Flap endonuclease Rad27, putative [Talaromyces stipitatus ATCC
10500]
Length = 399
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++AGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 57 LMSDAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 117 EAKETGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GC
Sbjct: 177 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IP+DWPY+EAR LF P+V
Sbjct: 237 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVR 296
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ Q KW +PD EGLI FLV+E GF+ DRV ++ + Q RLE FFKPV
Sbjct: 297 KADDPQCDFKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPV 356
Query: 298 ANT---SAPIKRK 307
T A +KRK
Sbjct: 357 TKTEAEKASLKRK 369
>gi|116203453|ref|XP_001227537.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88175738|gb|EAQ83206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 378
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 213/305 (69%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L
Sbjct: 36 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEANEGLE 95
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 96 EAKETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYILAPTEAEAQCAVLARAGKV 155
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E V K+LE LN+ QF+DLCIL GC
Sbjct: 156 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHVEKVLEGLNMERKQFVDLCILLGC 215
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HGS+E ++E N + RY +P+DWP+++AR LF P+V
Sbjct: 216 DYLDPIPKVGPSTALKLIREHGSLEKVVEFMKNDPKSRYTVPDDWPFEDARDLFFSPDVR 275
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FLV E GF+ DRV +++ S Q R+E FFK V
Sbjct: 276 QADDPLCDFKWDKPDMEGLVKFLVQEKGFSEDRVRSGGARLEKNLKSSQQSRIEGFFKVV 335
Query: 298 ANTSA 302
T A
Sbjct: 336 PKTEA 340
>gi|429854713|gb|ELA29705.1| DNA-repair protein rad2 [Colletotrichum gloeosporioides Nara gc5]
Length = 394
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/314 (52%), Positives = 222/314 (70%), Gaps = 7/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A ++L
Sbjct: 53 LMNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEANENLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P+ E + K+LE L + +QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLEGLGMEREQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG+++ ++E I + +YQIPEDWPYQ+AR LF +P+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGTLDKLVEAIKEDPKGKYQIPEDWPYQDARELFFKPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD +GL+ FLV+E GF+ DRV A +++ S Q RL+ FFK +
Sbjct: 293 PADDPLCDFKWEKPDMDGLVQFLVTEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVI 352
Query: 298 ANT---SAPIKRKV 308
T A KRK+
Sbjct: 353 PKTEEQKADAKRKL 366
>gi|317376211|sp|B8MNF2.2|FEN1_TALSN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++AGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 53 LMSDAGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKGGELAKRSARKREAHEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDMEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + K LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLDKALEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IP+DWPY+EAR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPDDWPYKEARELFFNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ Q KW +PD EGLI FLV+E GF+ DRV ++ + Q RLE FFKPV
Sbjct: 293 KADDPQCDFKWESPDVEGLIQFLVTEKGFSEDRVRNGAARLAKNLKSAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
T A +KRK
Sbjct: 353 TKTEAEKASLKRK 365
>gi|261244970|ref|NP_001159668.1| flap endonuclease 1 [Ovis aries]
gi|317376193|sp|C8BKD0.1|FEN1_SHEEP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|256665367|gb|ACV04829.1| flap structure-specific endonuclease 1 [Ovis aries]
Length = 380
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAETEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVRFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|320590957|gb|EFX03398.1| DNA-repair protein rad2 [Grosmannia clavigera kw1407]
Length = 856
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/304 (53%), Positives = 219/304 (72%), Gaps = 4/304 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLT++AGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +AT+ L
Sbjct: 514 MLTSDAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYMRKQEATEGL 573
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+
Sbjct: 574 EEAKETGTAEDIEKFSRRTVRVTREHNTECQRLLKLMGIPFIVAPTEAEAQCAELARAGK 633
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+L F P LRHL RK P+ E + K+L LN+ +QF+DLCIL G
Sbjct: 634 VYAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKLLLGLNMEREQFVDLCILLG 693
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV 237
CDY D I +G TALKLIR+HGS+E ++E + ++++ IP+DWPY++AR LF +P+V
Sbjct: 694 CDYLDPIPKVGPNTALKLIREHGSLEKVVEFMKTDKKQKFVIPDDWPYEDARELFFKPDV 753
Query: 238 VT-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
+ + + KW PD GL+ FLV+E GF+ DRV A +++ + Q RLE FFKP
Sbjct: 754 RSASDPECDFKWEKPDVPGLVQFLVNEKGFSEDRVRSAAARLEKHLKGTQQQRLEGFFKP 813
Query: 297 VANT 300
V T
Sbjct: 814 VPKT 817
>gi|258573689|ref|XP_002541026.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
gi|237901292|gb|EEP75693.1| DNA-repair protein rad2 [Uncinocarpus reesii 1704]
Length = 413
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 71 LMNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRIARKQEAAEQHE 130
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 131 EAKETGTTEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYINAPTEAEAQCAVLARAGKV 190
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L + F+DLCIL GC
Sbjct: 191 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLGMDRKTFVDLCILLGC 250
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E N +++Y IP+DWPY++AR LF EP+V
Sbjct: 251 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAMKNDPKQKYTIPDDWPYEQARDLFFEPDVR 310
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD EGL+ FLV GF+ DRV +++ + Q RLE FFKPV
Sbjct: 311 PADHPECDFKWEAPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNMKTAQQSRLEGFFKPV 370
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 371 AKTDEEKASLKRK 383
>gi|67524613|ref|XP_660368.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|74597180|sp|Q5B9L6.1|FEN1_EMENI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40744016|gb|EAA63198.1| hypothetical protein AN2764.2 [Aspergillus nidulans FGSC A4]
gi|259486319|tpe|CBF84062.1| TPA: 5' to 3' exonuclease, 5' flap endonuclease (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 395
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 165/313 (52%), Positives = 221/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRSARKHEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + +QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRNQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HG++E ++E+I +++Y IPE WPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIRDHGTLEKVVESIEKDPKQKYVIPESWPYQDARELFLNPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD EGL++FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 DANDPECDFKWEAPDIEGLVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 AKTDAEKATLKRK 365
>gi|400598682|gb|EJP66391.1| DNA-repair protein rad2 [Beauveria bassiana ARSEF 2860]
Length = 394
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 216/305 (70%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ A + L
Sbjct: 53 LMNDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTAQEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L K+G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAVLAKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + K+LE LN+ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMKRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HGS+E ++E + ++++Y IPEDWPY++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPTTALKLIREHGSLEKVVEAMESDSKKKYTIPEDWPYKDARDLFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ +KW PD +GL+ FLV+E GF+ DRV +++ S Q RLE FFK +
Sbjct: 293 PADDPLCDVKWDKPDMDGLVQFLVAEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKVM 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTEA 357
>gi|380479712|emb|CCF42855.1| XPG domain-containing protein [Colletotrichum higginsianum]
Length = 394
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 166/314 (52%), Positives = 220/314 (70%), Gaps = 7/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LTNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN DC++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVEKFSRRTVRVTREHNADCQKLLKLMGIPFIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P+ E + K+LE L + QF+D CIL GC
Sbjct: 173 YAAASEDMDTLTFDTPILLRHLTFSEQRKEPIQEVHIDKVLEGLGMERKQFVDFCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG +ET++E N +++Y IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGDLETLVEAFKNDPKQKYVIPEDWPYQDARELFLNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ +LV+E GF+ DRV A +++ S Q RL+ FFK +
Sbjct: 293 PADDPLCDFKWEKPDMEGLVQYLVTEKGFSEDRVRGAGARLEKNLKSSQQVRLDGFFKVI 352
Query: 298 ANT---SAPIKRKV 308
T A KRK+
Sbjct: 353 PKTEEEKAAHKRKL 366
>gi|403255047|ref|XP_003920260.1| PREDICTED: flap endonuclease 1 isoform 1 [Saimiri boliviensis
boliviensis]
gi|403255049|ref|XP_003920261.1| PREDICTED: flap endonuclease 1 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 380
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL S+K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASESKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPTKYPVPENWLHREAHQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|317374926|sp|Q0CBS0.2|FEN1_ASPTN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 165/313 (52%), Positives = 221/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E +++ LE L++ +FIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIPEDWPYQDARELFLHPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 DANDPECDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A + A +KRK
Sbjct: 353 ARSDEEKATLKRK 365
>gi|332021297|gb|EGI61676.1| Flap endonuclease 1-B [Acromyrmex echinatior]
Length = 381
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 165/306 (53%), Positives = 222/306 (72%), Gaps = 1/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT GE TSHL G F RTIR++E G+KP+YVFDG+PP+LK EL KR +R +A L
Sbjct: 53 LTTVDGETTSHLMGTFYRTIRMVEQGIKPVYVFDGKPPNLKSGELTKRAERRDEAQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN E I+KF++R VKVTK H D+ K LL+LMG+P V+AP EAEAQCAAL K+G+V
Sbjct: 113 AAEEDGNVEAIDKFNRRLVKVTKTHADEAKELLQLMGIPYVDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV E K+L L L ++FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLAGLELNHNEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +SI+G+G + A++LI+ H S+E I+ENI+ ++Y IPEDW Y++AR LF+EPE V++
Sbjct: 233 DYTNSIKGVGPKRAIELIKNHRSLEKIIENIDVKKYPIPEDWNYKDARLLFQEPE-VSNP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +Q+KWS PDEEGL+ FL + FN +RV +K+ A+N S+QGRL+SFFK + N++
Sbjct: 292 DDVQLKWSEPDEEGLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKVLPNST 351
Query: 302 APIKRK 307
KRK
Sbjct: 352 PTPKRK 357
>gi|75775305|gb|AAI05256.1| Flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|4758356|ref|NP_004102.1| flap endonuclease 1 [Homo sapiens]
gi|114637922|ref|XP_001149352.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan troglodytes]
gi|297688500|ref|XP_002821719.1| PREDICTED: flap endonuclease 1 isoform 1 [Pongo abelii]
gi|297688502|ref|XP_002821720.1| PREDICTED: flap endonuclease 1 isoform 2 [Pongo abelii]
gi|332836633|ref|XP_001149490.2| PREDICTED: flap endonuclease 1 isoform 4 [Pan troglodytes]
gi|397516600|ref|XP_003828512.1| PREDICTED: flap endonuclease 1 isoform 1 [Pan paniscus]
gi|397516602|ref|XP_003828513.1| PREDICTED: flap endonuclease 1 isoform 2 [Pan paniscus]
gi|410045196|ref|XP_003951955.1| PREDICTED: flap endonuclease 1 [Pan troglodytes]
gi|426368750|ref|XP_004051365.1| PREDICTED: flap endonuclease 1 isoform 1 [Gorilla gorilla gorilla]
gi|426368752|ref|XP_004051366.1| PREDICTED: flap endonuclease 1 isoform 2 [Gorilla gorilla gorilla]
gi|426368754|ref|XP_004051367.1| PREDICTED: flap endonuclease 1 isoform 3 [Gorilla gorilla gorilla]
gi|729475|sp|P39748.1|FEN1_HUMAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=DNase
IV; AltName: Full=Flap structure-specific endonuclease
1; AltName: Full=Maturation factor 1; Short=MF1;
Short=hFEN-1
gi|21668123|gb|AAM74238.1|AF523117_1 flap structure-specific endonuclease 1 [Homo sapiens]
gi|642090|gb|AAA91331.1| endonuclease [Homo sapiens]
gi|704377|gb|AAB32522.1| DNase IV=nuclear 42 kda 5' -> 3' exonuclease [human, HeLa cells,
Peptide, 380 aa]
gi|3169155|gb|AAC23394.1| FEN1_HUMAN [Homo sapiens]
gi|3980293|emb|CAA54166.1| flap endonuclease-1 [Homo sapiens]
gi|12653113|gb|AAH00323.1| Flap structure-specific endonuclease 1 [Homo sapiens]
gi|49168608|emb|CAG38799.1| FEN1 [Homo sapiens]
gi|54695918|gb|AAV38331.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|60813555|gb|AAX36265.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|60813577|gb|AAX36266.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355090|gb|AAX41100.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61355958|gb|AAX41194.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61362985|gb|AAX42314.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|119594378|gb|EAW73972.1| flap structure-specific endonuclease 1 [Homo sapiens]
gi|189053461|dbj|BAG35627.1| unnamed protein product [Homo sapiens]
gi|208968397|dbj|BAG74037.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|410220904|gb|JAA07671.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410267972|gb|JAA21952.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410301536|gb|JAA29368.1| flap structure-specific endonuclease 1 [Pan troglodytes]
gi|410335329|gb|JAA36611.1| flap structure-specific endonuclease 1 [Pan troglodytes]
Length = 380
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|115402747|ref|XP_001217450.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
gi|114189296|gb|EAU30996.1| DNA-repair protein rad2 [Aspergillus terreus NIH2624]
Length = 402
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/313 (52%), Positives = 221/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +AT+
Sbjct: 60 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKTEATEAHE 119
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 120 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 179
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E +++ LE L++ +FIDLCIL GC
Sbjct: 180 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLSRALEGLDMDRAKFIDLCILLGC 239
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 240 DYLEPIPKVGPNTALKLIRDHGSLEKVVEYIQNDPKKKYVIPEDWPYQDARELFLHPDVR 299
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 300 DANDPECDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 359
Query: 298 ANTS---APIKRK 307
A + A +KRK
Sbjct: 360 ARSDEEKATLKRK 372
>gi|61365237|gb|AAX42675.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61365242|gb|AAX42676.1| flap structure-specific endonuclease 1 [synthetic construct]
gi|61369466|gb|AAX43341.1| flap structure-specific endonuclease 1 [synthetic construct]
Length = 381
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|61680058|pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680059|pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
gi|61680060|pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 51 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 110
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 111 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 170
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 171 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 230
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 231 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 289
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 290 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 348
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 349 LSSAKRK 355
>gi|194377686|dbj|BAG63206.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 343 bits (879), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 16 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 75
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 76 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 135
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 136 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 195
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 196 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 254
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 255 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 313
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 314 LSSAKRK 320
>gi|195025439|ref|XP_001986060.1| GH21157 [Drosophila grimshawi]
gi|317374890|sp|B4J6M4.1|FEN1_DROGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|193902060|gb|EDW00927.1| GH21157 [Drosophila grimshawi]
Length = 388
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 220/304 (72%), Gaps = 4/304 (1%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG PPD+K ELAKR +R +A L A EA
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGAPPDMKSGELAKRAERRDEAEKALKAATEA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G++ IEKF++R V+VTK+H+ + K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDEAQIEKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
IRG+G + A++LI+ + IETILENI+ +Y +PE+W Y+ AR LF EP+ VTD + +
Sbjct: 238 IRGVGPKRAIELIKSYRDIETILENIDTNKYAVPENWNYKRARELFIEPD-VTDASTIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV---ANTSAP 303
KW+ PDE+GL+ FL + FN +RV +K+ +K +Q RL+SFFK + N A
Sbjct: 297 KWTDPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFKTLPSSPNAIAA 356
Query: 304 IKRK 307
KRK
Sbjct: 357 AKRK 360
>gi|452004834|gb|EMD97290.1| hypothetical protein COCHEDRAFT_1220743 [Cochliobolus
heterostrophus C5]
Length = 395
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 218/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A
Sbjct: 53 LMNETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +C+RLLKLMG+P + AP+EAEAQCAAL K G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTKEHNAECQRLLKLMGIPYIIAPTEAEAQCAALAKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDQKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V+
Sbjct: 233 DYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVL 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 293 PADAPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPI 352
Query: 298 ANTS---APIKRK 307
T+ A +KRK
Sbjct: 353 EKTAEEKATLKRK 365
>gi|344258300|gb|EGW14404.1| Flap endonuclease 1 [Cricetulus griseus]
Length = 412
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 232/339 (68%), Gaps = 34/339 (10%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR----------- 49
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 50 ---------------------YSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHND 88
+RA+A L +A EAG +E++EKF+KR VKVTKQHND
Sbjct: 112 QQAQEAGVEEEVEKFTKLLLKSERRAEAEKQLQQAQEAGVEEEVEKFTKRLVKVTKQHND 171
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+CK LL LMG+P ++APSEAEA CAAL K+G+VYA A+EDMD LTFG+P +RHL +
Sbjct: 172 ECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEA 231
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
+K+P+ EF ++++L+EL L +QF+DLCIL G DYC+SIRGIG + A+ LI++H SIE I
Sbjct: 232 KKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEI 291
Query: 209 LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 268
+ ++ +Y +PE+W ++EA++LF EPEV+ D E +++KWS P+EE L+ F+ E F+
Sbjct: 292 VRRLDPNKYPVPENWLHKEAQQLFLEPEVL-DPESVELKWSEPNEEELVKFMCGEKQFSE 350
Query: 269 DRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
+R+ ++++ ++ S+QGRL+ FFK V + + KRK
Sbjct: 351 ERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGSLSSAKRK 388
>gi|75057714|sp|Q58DH8.1|FEN1_BOVIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|61553325|gb|AAX46387.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61553832|gb|AAX46466.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|61554710|gb|AAX46602.1| flap structure-specific endonuclease 1 [Bos taurus]
gi|296471658|tpg|DAA13773.1| TPA: flap endonuclease 1 [Bos taurus]
Length = 380
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|240273940|gb|EER37459.1| DNA repair protein RAD2 [Ajellomyces capsulatus H143]
Length = 519
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 177 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 236
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 237 EAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 296
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 297 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 356
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V
Sbjct: 357 DYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVR 416
Query: 239 T-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 417 NADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 476
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 477 AKTEQEKAVLKRK 489
>gi|154286840|ref|XP_001544215.1| flap endonuclease [Ajellomyces capsulatus NAm1]
gi|317374874|sp|A6QV55.1|FEN1_AJECN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150407856|gb|EDN03397.1| flap endonuclease [Ajellomyces capsulatus NAm1]
Length = 395
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V
Sbjct: 233 DYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 293 KADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 AKTEQEKAVLKRK 365
>gi|317374936|sp|C6HQJ2.2|FEN1_AJECH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V
Sbjct: 233 DYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVR 292
Query: 239 T-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 293 NADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 AKTEQEKAVLKRK 365
>gi|332249905|ref|XP_003274094.1| PREDICTED: flap endonuclease 1 isoform 1 [Nomascus leucogenys]
gi|332249907|ref|XP_003274095.1| PREDICTED: flap endonuclease 1 isoform 2 [Nomascus leucogenys]
gi|441604271|ref|XP_004087863.1| PREDICTED: flap endonuclease 1 [Nomascus leucogenys]
Length = 380
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHHLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|325094624|gb|EGC47934.1| DNA repair protein RAD2 [Ajellomyces capsulatus H88]
Length = 359
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 17 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 137 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V
Sbjct: 197 DYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVR 256
Query: 239 T-DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 257 NADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 316
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 317 AKTEQEKAVLKRK 329
>gi|225555317|gb|EEH03609.1| DNA-repair protein rad2 [Ajellomyces capsulatus G186AR]
Length = 359
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 17 LTSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN++CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKEVGTAEEVEKFSRRTVRVTREHNEECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 137 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY+EAR LF +P+V
Sbjct: 197 DYLDPIPKVGPNTALKLIRDHGSLEQVVEAIKSDPKKKYTIPEDWPYKEARELFFDPDVR 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 257 KADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 316
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 317 AKTEQEKAVLKRK 329
>gi|440901464|gb|ELR52399.1| Flap endonuclease 1 [Bos grunniens mutus]
Length = 380
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|336259381|ref|XP_003344492.1| hypothetical protein SMAC_08742 [Sordaria macrospora k-hell]
gi|317376194|sp|D1ZT73.1|FEN1_SORMK RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|380087456|emb|CCC05373.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/303 (53%), Positives = 212/303 (69%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNEAGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E K+LE L + QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFHTPILLRHLTFSEQRKEPIQEIHTDKVLEGLGMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR+HG++E ++E + + RYQIPEDWP+++AR LF EP+V
Sbjct: 233 DYLDPIPKVGPSTALKLIREHGTLEEVVEWMKADPKGRYQIPEDWPFEDARALFFEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD EGL+ FL E GF+ DRV A K++ S Q R+E FFK +
Sbjct: 293 PADDPLCDFKWEKPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQTSQQARIEGFFKVL 352
Query: 298 ANT 300
T
Sbjct: 353 PKT 355
>gi|78042574|ref|NP_001030285.1| flap endonuclease 1 [Bos taurus]
gi|61553249|gb|AAX46374.1| flap structure-specific endonuclease 1 [Bos taurus]
Length = 380
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA AG + ++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QEAQAAGAEAEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAMDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+E+ LI F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEKELIKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|261193829|ref|XP_002623320.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239588925|gb|EEQ71568.1| DNA-repair protein rad2 [Ajellomyces dermatitidis SLH14081]
gi|239613756|gb|EEQ90743.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ER-3]
Length = 406
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 64 LMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 123
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 124 EAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKV 183
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 184 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 243
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 244 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFDPDVR 303
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV +++ + Q RLE FFKP+
Sbjct: 304 KADHPDCNFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPI 363
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 364 AKTEQEKATLKRK 376
>gi|295663294|ref|XP_002792200.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279375|gb|EEH34941.1| DNA-repair protein rad2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 381
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 39 LMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 99 EAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 158
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE+L++ QF+DLCIL GC
Sbjct: 159 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEDLDMDRKQFVDLCILLGC 218
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 219 DYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDARELFFDPDVR 278
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 279 KADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 338
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 339 AKTQEEKATLKRK 351
>gi|195382111|ref|XP_002049775.1| GJ21778 [Drosophila virilis]
gi|317374896|sp|B4LM90.1|FEN1_DROVI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194144572|gb|EDW60968.1| GJ21778 [Drosophila virilis]
Length = 386
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 223/307 (72%), Gaps = 7/307 (2%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDGQPPDLK ELAKR +R +A L A EA
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGQPPDLKSGELAKRAERREEAEKALKAATEA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G++ +I+KF++R V+VTK+H+ + K LLKLMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDEAEIDKFNRRLVRVTKEHSREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+L+ L LT +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSCKLLRYLTYSEARKMPVKEFSYDKVLQGLELTSKEFIDLCILMGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+G+G + A++LI+ + IETILENI+ +Y +PE+W Y+ AR LF EP+V D + +
Sbjct: 238 IKGVGPKRAIELIKSYRDIETILENIDTSKYPVPENWNYKRARELFIEPDVA-DASAIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF-----KPVANTS 301
KW+ PDE+GL+ FL + FN +RV +K+ +K +Q RL+SFF P A+TS
Sbjct: 297 KWTEPDEDGLVQFLCGDRQFNEERVRNGAKKLLKSKQAQTQVRLDSFFTTLPSTPNASTS 356
Query: 302 APIKRKV 308
A KRK
Sbjct: 357 AA-KRKA 362
>gi|145245469|ref|XP_001395002.1| DNA repair protein rad2 [Aspergillus niger CBS 513.88]
gi|317374885|sp|A5ABU3.1|FEN1_ASPNC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134079702|emb|CAK97128.1| unnamed protein product [Aspergillus niger]
Length = 395
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++++AT+
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL---ENINRERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HGS+E +L EN ++++ +PEDWPY++AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLNPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD GL++FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 DANDPECDFKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKASLKRK 365
>gi|167536429|ref|XP_001749886.1| hypothetical protein [Monosiga brevicollis MX1]
gi|317374912|sp|A9VB27.1|FEN1_MONBE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|163771601|gb|EDQ85265.1| predicted protein [Monosiga brevicollis MX1]
Length = 368
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/301 (51%), Positives = 219/301 (72%), Gaps = 3/301 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL G+F RTIR++ G+KP+YVFDG+PP +K EL KR ++R +A +L
Sbjct: 53 LVNEAGEATSHLSGLFYRTIRMVNHGIKPLYVFDGKPPTMKSGELLKRGARRKEAQANLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ E +EKFS+R V VT++HN+ C++LL LMG+P + AP+EAEAQCA L K G+V
Sbjct: 113 EATEQGDTEQMEKFSRRLVHVTREHNEQCRQLLTLMGIPFIIAPTEAEAQCAELVKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LRH+ +RK+P+ EF + K L ++M++FID+CIL GC
Sbjct: 173 FATATEDMDALTFGTTVLLRHMTFSEARKMPIQEFRLQK--GGLEMSMEEFIDMCILLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG Q A +LI++H +IET+L++++ ++Y IPEDW + EAR LF P+ VT
Sbjct: 231 DYCDSIKGIGRQKAYQLIKEHKNIETVLKHLDPKKYVIPEDWHFAEARELFLRPD-VTPA 289
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ + KW+ PD +GL+ F+ ENGF DR+ K+ EK+ A+ QGRL+SFF + + S
Sbjct: 290 AECEFKWTTPDIDGLVKFMCQENGFAEDRIRKSAEKLVKARKGGQQGRLDSFFTAIPSGS 349
Query: 302 A 302
A
Sbjct: 350 A 350
>gi|350631707|gb|EHA20078.1| hypothetical protein ASPNIDRAFT_48158 [Aspergillus niger ATCC 1015]
Length = 359
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++++AT+
Sbjct: 17 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 137 YAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL---ENINRERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HGS+E +L EN ++++ +PEDWPY++AR LF P+V
Sbjct: 197 DYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLNPDVR 256
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD GL++FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 257 DANDPECDFKWEAPDVPGLVDFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPV 316
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 317 ARTDEEKASLKRK 329
>gi|444513068|gb|ELV10260.1| Flap endonuclease 1 [Tupaia chinensis]
Length = 380
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 232/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE G+ TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 MLQNEEGDTTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKFSKR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFSKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L+ +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLSQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|327350064|gb|EGE78921.1| DNA-repair protein rad2 [Ajellomyces dermatitidis ATCC 18188]
Length = 402
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 60 LMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 119
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 120 EAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKV 179
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 180 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 239
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 240 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFDPDVR 299
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV +++ + Q RLE FFKP+
Sbjct: 300 KADHPDCNFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPI 359
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 360 AKTEQEKATLKRK 372
>gi|388454741|ref|NP_001252879.1| flap endonuclease 1 [Macaca mulatta]
gi|402893159|ref|XP_003909769.1| PREDICTED: flap endonuclease 1 isoform 1 [Papio anubis]
gi|402893161|ref|XP_003909770.1| PREDICTED: flap endonuclease 1 isoform 2 [Papio anubis]
gi|75076152|sp|Q4R5U5.1|FEN1_MACFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|67970375|dbj|BAE01530.1| unnamed protein product [Macaca fascicularis]
gi|355566422|gb|EHH22801.1| Flap endonuclease 1 [Macaca mulatta]
gi|355752043|gb|EHH56163.1| Flap endonuclease 1 [Macaca fascicularis]
gi|380787489|gb|AFE65620.1| flap endonuclease 1 [Macaca mulatta]
gi|383413161|gb|AFH29794.1| flap endonuclease 1 [Macaca mulatta]
gi|384939550|gb|AFI33380.1| flap endonuclease 1 [Macaca mulatta]
Length = 380
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/307 (52%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF +PEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAHQLFLKPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|358369087|dbj|GAA85702.1| DNA-repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 395
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR++++++AT+
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFARKSEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFETPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL---ENINRERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR HGS+E +L EN ++++ +PEDWPY++AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIRDHGSLEKVLEFMENDPKKKFVVPEDWPYEDARELFLNPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ + KW APD GL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 DANDPECDFKWEAPDVPGLVEFLVKDKGFNEDRVKNGAARLQKNLKSAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKASLKRK 365
>gi|317374933|sp|C5GPA7.2|FEN1_AJEDR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317374934|sp|C5JVG7.2|FEN1_AJEDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R++E G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMSETGETTSHLMGMFYRTLRIVENGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKEVGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGVPYINAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 233 DYLDPIPKVGPNTALKLIRDHGSLEKVVEAIQSDPKKKYTIPEDWPYKDARELFFDPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV +++ + Q RLE FFKP+
Sbjct: 293 KADHPDCNFKWEAPDVEGLVKFLVEEKAFSEDRVRNGAARLQKNLKTAQQSRLEGFFKPI 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 AKTEQEKATLKRK 365
>gi|453084814|gb|EMF12858.1| flap endonuclease [Mycosphaerella populorum SO2202]
Length = 393
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 161/311 (51%), Positives = 219/311 (70%), Gaps = 5/311 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQEQHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++E+FS+RTV+VTK+HN + +RLLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVERFSRRTVRVTKEHNAEAQRLLKLMGVPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF AP LRHL RK P+ E + ++LE L+ ++QFID+CIL GC
Sbjct: 173 YAAASEDMDTLTFNAPVLLRHLTFSEQRKEPIQEIHLDRVLEGLDFDLNQFIDMCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VT 239
DY D ++GIG + A LI++H ++E ++E+I + +Y +PEDWPYQEAR LF+EP+V
Sbjct: 233 DYLDPVKGIGPKNAHALIKEHKTLEKVVEHIEKTGKYTLPEDWPYQEARLLFQEPDVRAA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
D + KW APD EGL+ FLV E GF+ DRV A +++ Q RLE FFK
Sbjct: 293 DAPECDFKWEAPDVEGLVKFLVEEKGFSEDRVRSAATRLQKNLKSGQQSRLEGFFKVKEK 352
Query: 300 T---SAPIKRK 307
T A +KRK
Sbjct: 353 TEDEKASLKRK 363
>gi|367047833|ref|XP_003654296.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
gi|347001559|gb|AEO67960.1| hypothetical protein THITE_2117171 [Thielavia terrestris NRRL 8126]
Length = 359
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 214/305 (70%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+R+ ++ +A + L
Sbjct: 17 LMNESGDTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRFQRKQEANEGLE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +C+RLL+LMG+P + AP+EAEAQCA L ++G+V
Sbjct: 77 EAKETGTAEDVEKFSRRTVRVTKEHNAECQRLLRLMGIPYIVAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F P LRHL RK P+ E +AK+LE LN+ QF+DLCIL GC
Sbjct: 137 YAAASEDMDTLCFDTPILLRHLTFSEQRKEPIQEIHLAKVLEGLNMDRKQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEVV 238
DY D I +G TALKLIR+HG++E ++E N + RY IP+DWP+Q+AR LF P+V
Sbjct: 197 DYLDPIPKVGPSTALKLIREHGTLEKVVEFMRNDPKGRYTIPDDWPFQDARELFFSPDVR 256
Query: 239 TDEEQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
++ L KW PD EGL+ FLV E GF+ DRV +++ S Q R+E FFK +
Sbjct: 257 QPDDPLCDFKWDKPDIEGLVQFLVHEKGFSEDRVRAGGARLEKNLKSSQQARIEGFFKVL 316
Query: 298 ANTSA 302
T A
Sbjct: 317 PKTEA 321
>gi|225685184|gb|EEH23468.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb03]
Length = 359
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 222/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 17 LMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 137 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 197 DYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDARELFFDPDVR 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 257 KADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 316
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 317 AKTQEEKATLKRK 329
>gi|351699147|gb|EHB02066.1| Flap endonuclease 1 [Heterocephalus glaber]
Length = 380
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/306 (54%), Positives = 230/306 (75%), Gaps = 2/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 53 LQSEEGETTSHLMGMFYRTIRMMEHGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+V
Sbjct: 113 QAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD LTFG+P +RHL +RK+P+ EF +++IL+ LNLT +QF+DLCIL G
Sbjct: 173 YAAATEDMDCLTFGSPVLMRHLTASEARKLPIQEFHLSRILQALNLTQEQFVDLCILLGS 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 233 DYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQQLFLEPEVL-DP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E +++KWS P+EE L+ FL E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 292 ESVELKWSEPNEEELVKFLCGEKQFSEERIRGGVRRLSKSRQGSTQGRLDDFFK-VTGSL 350
Query: 302 APIKRK 307
+ KRK
Sbjct: 351 SSAKRK 356
>gi|302652986|ref|XP_003018331.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
gi|291181960|gb|EFE37686.1| hypothetical protein TRV_07676 [Trichophyton verrucosum HKI 0517]
Length = 376
Score = 340 bits (872), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 215/304 (70%), Gaps = 4/304 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 33 ILTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAA 92
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VTK+HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+
Sbjct: 93 EEAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGK 152
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL G
Sbjct: 153 VFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG 212
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV 237
CDY D I +G TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V
Sbjct: 213 CDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIPDDWPYLQARELFFNPDV 272
Query: 238 -VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
D + KWSAPD EGL+ FLV E GF+ DRV ++ + Q RLE FFKP
Sbjct: 273 RPADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKP 332
Query: 297 VANT 300
VA T
Sbjct: 333 VAKT 336
>gi|296804544|ref|XP_002843124.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
gi|317374914|sp|C5FZT5.1|FEN1_NANOT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238845726|gb|EEQ35388.1| DNA-repair protein rad2 [Arthroderma otae CBS 113480]
Length = 394
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 214/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 52 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAE 111
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CKRLLKLMG+P ++AP+EAEAQCA L K G+V
Sbjct: 112 EAKETGTAEDVEKFSRRTVRVTREHNAECKRLLKLMGIPYIDAPTEAEAQCAVLAKEGKV 171
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GC
Sbjct: 172 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMEMTQFVDLCILLGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V
Sbjct: 232 DYLDPIPKVGPNTALKMIRDHGTLEKVVETIESDPKKKYVIPDDWPYLQARDLFFNPDVR 291
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW+APD EGL+ FLV E GF+ DRV ++ + Q RLE FFKPV
Sbjct: 292 PADAPECDFKWTAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPV 351
Query: 298 ANT 300
A T
Sbjct: 352 AKT 354
>gi|310800740|gb|EFQ35633.1| XPG domain-containing protein [Glomerella graminicola M1.001]
Length = 394
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 164/314 (52%), Positives = 218/314 (69%), Gaps = 7/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT L
Sbjct: 53 LTNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATVGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN DC++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNADCQKLLKLMGIPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL +RK P+ E + K+L L + QF+D CIL GC
Sbjct: 173 YAAASEDMDTLTFDTPILLRHLTFSEARKEPIQEVHIDKVLAGLGMERKQFVDFCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALKLIR+HG +ET++E N +++Y +P+DWPYQ+AR LF P+V
Sbjct: 233 DYLDPIPKIGPSTALKLIREHGDLETLVEAFKNDPKQKYVVPDDWPYQDARELFLNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ KW PD +GL+ +LV E GF+ DRV A +++ S Q RL+ FFK +
Sbjct: 293 PADDPLCDFKWEKPDMDGLVQYLVMEKGFSEDRVRSAGARLEKNLKSSQQVRLDGFFKVI 352
Query: 298 ANT---SAPIKRKV 308
T A KRK+
Sbjct: 353 PKTEEEKASAKRKL 366
>gi|121704724|ref|XP_001270625.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119398771|gb|EAW09199.1| Flap endonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 401
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 59 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 118
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E+IEKFS+RTV+VT++HN +CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 119 EAKETGTAEEIEKFSRRTVRVTREHNAECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 178
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + ++LE L++ QFID+CIL GC
Sbjct: 179 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLGC 238
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 239 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDARELFHHPDVR 298
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L++FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 299 AADHPECDFKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 358
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 359 AKTDAEKASLKRK 371
>gi|226294510|gb|EEH49930.1| DNA-repair protein rad2 [Paracoccidioides brasiliensis Pb18]
Length = 528
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 222/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 186 LMSETGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFMRKSEAAEAHE 245
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 246 EAKEIGTAEDVEKFSRRTVRVTREHNEECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 305
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P++E + ++LE L++ QF+DLCIL GC
Sbjct: 306 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPILEIHLDRVLEGLDMDRKQFVDLCILLGC 365
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I IG TALKLIR HGS+E ++E I +++Y IPEDWPY++AR LF +P+V
Sbjct: 366 DYLDPIPKIGPNTALKLIRDHGSLEKVVEAIESDPKKKYVIPEDWPYKDARELFFDPDVR 425
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW APD EGL+ FLV E F+ DRV A +++ + Q RLE FFKP+
Sbjct: 426 KADHPDCDFKWEAPDVEGLVKFLVEEKAFSEDRVRNAAARLQKNLKTAQQSRLEGFFKPI 485
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 486 AKTQEEKATLKRK 498
>gi|392566068|gb|EIW59244.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 406
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 162/317 (51%), Positives = 223/317 (70%), Gaps = 19/317 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ KR +A +D
Sbjct: 53 LLTNDAGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDN 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTAEDMDRFSRRTVKVTREHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTFGAP RHL +RK P+ E + K LE L + M QF +LCIL G
Sbjct: 173 VYAAGSEDMDTLTFGAPILYRHLTFSEARKTPISEINLQKALEGLEMNMSQFTELCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI----------------NRERYQIPEDWP 224
CDY + I+G+G ++ALKLIR+HGS+ ILE++ + QIPE+WP
Sbjct: 233 CDYLEPIKGVGPKSALKLIREHGSLGKILEHLKEKAAEKEEAAEEGKKKKGGVQIPEEWP 292
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
+++A+ +F +P+ VT ++L+++W +P+ +GL++FLV E GFN +RV K EK+ N
Sbjct: 293 WEQAKAIFLKPD-VTPADELELEWKSPNVDGLVDFLVREKGFNEERVRKGAEKLAKFLNA 351
Query: 285 SSQGRLESFF--KPVAN 299
QGRL+ FF KP A+
Sbjct: 352 KQQGRLDGFFTAKPKAS 368
>gi|355688549|gb|AER98539.1| flap structure-specific endonuclease 1 [Mustela putorius furo]
Length = 379
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 165/307 (53%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMGVP ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGVPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L+ +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLSQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPRRAVGLIQKHKSIEEIVRQLDPSKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|302504898|ref|XP_003014670.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
gi|291177976|gb|EFE33767.1| hypothetical protein ARB_07232 [Arthroderma benhamiae CBS 112371]
Length = 359
Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 214/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 17 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V
Sbjct: 77 EAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GC
Sbjct: 137 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V
Sbjct: 197 DYLDPIPKVGPNTALKMIRDHGTLEKVVEAIQSDPKKKYVIPDDWPYLQARELFFNPDVR 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KWSAPD EGL+ FLV E GF+ DRV ++ + Q RLE FFKPV
Sbjct: 257 PADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPV 316
Query: 298 ANT 300
A T
Sbjct: 317 AKT 319
>gi|194756700|ref|XP_001960614.1| GF13444 [Drosophila ananassae]
gi|317374888|sp|B3MDA3.1|FEN1_DROAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190621912|gb|EDV37436.1| GF13444 [Drosophila ananassae]
Length = 388
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/294 (54%), Positives = 216/294 (73%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A EA
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATEA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ +IEKF++R V+VTK+H + K LLKLMGVP VEAP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVEAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+L+ L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLDGLGVNNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV + + +++
Sbjct: 238 IKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKIARELFIEPEVA-NADAIEL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW+ PDEEGL+ FL + FN DRV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWTEPDEEGLVKFLCGDRQFNEDRVRSGAKKLLKSKQSQTQVRLDSFFKTLPST 350
>gi|91085979|ref|XP_971921.1| PREDICTED: similar to flap endonuclease-1 [Tribolium castaneum]
gi|270009935|gb|EFA06383.1| hypothetical protein TcasGA2_TC009261 [Tribolium castaneum]
Length = 381
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/306 (52%), Positives = 225/306 (73%), Gaps = 3/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PP+LK EL+KR +R +A L
Sbjct: 53 LTSVDGETTSHLLGTFYRTIRLIENGIKPVYVFDGKPPELKSAELSKRQERRDEAQKALD 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ +++KF++R VKVT+ H D+ K+LL LMGVP +EAP EAEAQCAA+ K G V
Sbjct: 113 KATELGDATEVDKFNRRLVKVTRHHADEAKQLLTLMGVPYIEAPCEAEAQCAAMVKGGLV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ LRHL +RK+PV E ++K+LE L L F+DLCIL GC
Sbjct: 173 YATATEDMDALTFGSNVLLRHLTFSEARKMPVQEIHLSKVLEGLELDQKAFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +SIRGIG + A++LI++H SIE IL+NI+ ++Y PE+W Y+ AR+LF+EPEV+ D
Sbjct: 233 DYTESIRGIGPKRAIELIKKHKSIEEILKNIDVKKYPPPENWNYEGARQLFEEPEVM-DA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
++++KW+ PDEEG++ FL + FN +RV ++K+ +++ S+QGRL+ FF ++ T
Sbjct: 292 AKIELKWTDPDEEGMVKFLCGDKQFNEERVRNGVKKLLKSRSTSTQGRLDGFFTVLSTT- 350
Query: 302 APIKRK 307
P KRK
Sbjct: 351 -PAKRK 355
>gi|346322835|gb|EGX92433.1| DNA-repair protein rad2 [Cordyceps militaris CM01]
Length = 394
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 214/305 (70%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ A + L
Sbjct: 53 LTNDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQTALEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLL LMG+P + AP+EAEAQCA L K+G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLALMGIPFIVAPTEAEAQCAVLAKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L F +P LRHL RK P+ E + K+LE LN+ QF+DLCIL GC
Sbjct: 173 FAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERKQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR++G++E ++E N ++++Y IPEDWPY++AR LF P+V
Sbjct: 233 DYLDPIPKVGPTTALKLIREYGTLEKVVEAMQNDSKKKYIIPEDWPYEDARDLFFSPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ +KW PD +GL+ FLV E GF+ DRV +++ S Q RLE FFK V
Sbjct: 293 PADDPLCDVKWDKPDMDGLVKFLVGEKGFSEDRVRSGGARLEKNLKSSQQARLEGFFKVV 352
Query: 298 ANTSA 302
T A
Sbjct: 353 PKTEA 357
>gi|317374931|sp|A1CJ75.2|FEN1_ASPCL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 223/313 (71%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E+IEKFS+RTV+VT++HN +CK+LLKLMGVP ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEIEKFSRRTVRVTREHNAECKKLLKLMGVPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + ++LE L++ QFID+CIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRVLEGLDMDRSQFIDMCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIESDPKKKYVIPEDWPYQDARELFHHPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L++FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 AADHPECDFKWEAPDIEALVDFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 AKTDAEKASLKRK 365
>gi|326429821|gb|EGD75391.1| flap endonuclease-1 [Salpingoeca sp. ATCC 50818]
Length = 380
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/308 (52%), Positives = 219/308 (71%), Gaps = 4/308 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GE TSHL G+F RTIR++ G+KP+YVFDG+PP LK ELAKR +R +A L
Sbjct: 53 LTNAEGETTSHLSGIFYRTIRMVNNGVKPVYVFDGKPPTLKSGELAKRTERRKEAQSKLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G + D+EKF++R VKVT +HN C+ LL LMG+P + AP EAEAQCA L K+G+V
Sbjct: 113 AATEEGVQADMEKFTRRLVKVTPEHNRQCQELLDLMGIPYIVAPCEAEAQCAELVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LRH+ +RK+P+ +FE+ K+LE L+L+ D+FIDLCIL GC
Sbjct: 173 FATATEDMDALTFGTSVLLRHMTFSEARKMPIQQFELKKVLEGLDLSQDEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEVVT 239
DYCD I GIG A LI++H SIE ILE I +E +Y +P+DW + EAR LFK PEV
Sbjct: 233 DYCDKIGGIGRVRAYSLIKEHHSIEAILEAIKKEKKKYTVPDDWKFAEARELFKNPEVAP 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
++ + +KW+ PD + L++F+ +++GF R+ + EK+ A++ S+QGRL+SFFK V
Sbjct: 293 AKD-IDLKWNIPDVDKLVDFMCNKHGFEEGRIRRGAEKLVKARSTSTQGRLDSFFK-VLP 350
Query: 300 TSAPIKRK 307
AP KRK
Sbjct: 351 GGAPKKRK 358
>gi|326470331|gb|EGD94340.1| flap endonuclease [Trichophyton tonsurans CBS 112818]
Length = 376
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/304 (54%), Positives = 215/304 (70%), Gaps = 4/304 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 33 ILTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAA 92
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VT++HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+
Sbjct: 93 EEAKETGTTEDVEKFSRRTVRVTREHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGK 152
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL G
Sbjct: 153 VFGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLG 212
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV 237
CDY D I +G TALK+IR HG++E ++E I +++Y IPEDWPY +AR LF P+V
Sbjct: 213 CDYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPYLQARELFFNPDV 272
Query: 238 -VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
D + KWSAPD EGL+ FLV E GF+ DRV ++ + Q RLE FFKP
Sbjct: 273 RPADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKP 332
Query: 297 VANT 300
+A T
Sbjct: 333 LAKT 336
>gi|403162368|ref|XP_003322600.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375172578|gb|EFP78181.2| flap endonuclease 1-A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 387
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 217/298 (72%), Gaps = 2/298 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL G+F RTIR+++ G+KP YVFDG+PP +K L+KR+ +R +A ++
Sbjct: 54 LMNEAGETTSHLMGLFYRTIRMVDNGIKPAYVFDGKPPAMKAGVLSKRFERRQEAKEEGE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDI+K S+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA LC+ G V
Sbjct: 114 EAKETGTTEDIDKLSRRTVKVTREHNEECRRLLTLMGIPWVVAPSEAEAQCAELCRGGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y SEDMD+LTFG P LRHL +RK+P++ + K+L L LTM+QFI+ C+L GC
Sbjct: 174 YGAGSEDMDTLTFGTPILLRHLTFSEARKMPILTVNLEKVLSGLELTMEQFIEFCVLCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINR-ERYQIPEDWPYQEARRLFKEPEVVTD 240
DY D ++G+ +TA KL+ +HGS+E ++E++ + PEDWP++EAR LF++PE VT
Sbjct: 234 DYVDPLKGVAAKTAHKLMMEHGSLEKVVEHLRESSKNPPPEDWPWEEARALFQKPE-VTP 292
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
+L+++W PD EGL++FLV E GF+ +RV K K+ A + QGRL+ FFKP+A
Sbjct: 293 SSELKLEWKKPDVEGLVDFLVKEKGFDEERVKKGAAKLTQAMTQKQQGRLDGFFKPIA 350
>gi|440470255|gb|ELQ39332.1| DNA-repair protein rad2 [Magnaporthe oryzae Y34]
gi|440487391|gb|ELQ67182.1| DNA-repair protein rad2 [Magnaporthe oryzae P131]
Length = 416
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 221/326 (67%), Gaps = 25/326 (7%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELA+RY ++ +A + L
Sbjct: 52 MLTNEDGQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELARRYQRKQEALEGL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VT++HN++C++LLKLMG+P + AP+EAEAQCA L ++G+
Sbjct: 112 EEARETGTAEDVEKFSRRTVRVTREHNEECRQLLKLMGIPYIIAPTEAEAQCAVLARAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-------TMD--- 170
V+A ASEDMD+L F +P LRHL +RK P+ E V K+LE L++ T D
Sbjct: 172 VFAAASEDMDTLCFDSPILLRHLTFSEARKEPIQEIHVDKVLEGLDMDRKQVRCTSDMVN 231
Query: 171 ------------QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--R 216
QF+DLCIL GCDY D I +G TALKLIR+HGS+ETI+E + + +
Sbjct: 232 VYQERPADSFNKQFVDLCILLGCDYLDPIPKVGPSTALKLIREHGSLETIVEKMKKGELK 291
Query: 217 YQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
Y +PEDWP+++AR LF P V D KW PD EGL+ +LV+E GF+ DRV
Sbjct: 292 YTVPEDWPFEDARDLFFNPAVHPADHPDCNFKWEKPDVEGLVKYLVTEKGFSEDRVRPGA 351
Query: 276 EKIKAAKNKSSQGRLESFFKPVANTS 301
+++ A S Q RLE FFKPVA T+
Sbjct: 352 LRLEKALGTSQQQRLEGFFKPVARTA 377
>gi|291409580|ref|XP_002721064.1| PREDICTED: flap structure-specific endonuclease 1 [Oryctolagus
cuniculus]
Length = 380
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 230/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYAVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSRSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|322700750|gb|EFY92503.1| DNA-repair protein rad2 [Metarhizium acridum CQMa 102]
Length = 426
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/336 (49%), Positives = 218/336 (64%), Gaps = 35/336 (10%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +AT+ L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEATEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECQRLLKLMGIPFIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ---------- 171
YA ASEDMD+L F P LRHL RK P+ E + K+LE LN+ Q
Sbjct: 173 YAAASEDMDTLCFNTPILLRHLTFSEQRKEPIQEIHLDKVLEGLNMERSQVSFPTSKIEI 232
Query: 172 ---------------------FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILE 210
F+DLCIL GCDY D + IG TALKLIR+HG++E +++
Sbjct: 233 LGYYDGKFVRLTKALRLQKTKFVDLCILLGCDYLDPVPKIGPTTALKLIREHGTLEKVVD 292
Query: 211 NINRE---RYQIPEDWPYQEARRLFKEPEV-VTDEEQLQIKWSAPDEEGLINFLVSENGF 266
I R+ +Y +PEDWPY++AR LF EP+V D+ KW PD EGL+ FLV+E GF
Sbjct: 293 AIERDPKKKYTLPEDWPYKDARDLFFEPDVRKADDPLCDFKWDKPDVEGLVTFLVTEKGF 352
Query: 267 NSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 302
+ DRV A +++ S Q RLE FFKP+ T A
Sbjct: 353 SEDRVRGAAARLEKNLKTSQQARLEGFFKPIPKTDA 388
>gi|379991146|ref|NP_001244014.1| flap endonuclease 1 [Equus caballus]
Length = 380
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 231/307 (75%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRGERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PETVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|451853401|gb|EMD66695.1| hypothetical protein COCSADRAFT_35197 [Cochliobolus sativus ND90Pr]
Length = 395
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 217/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A
Sbjct: 53 LMSETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +C++LLKLMG+P + AP+EAEAQCA L K G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTKEHNAECQQLLKLMGIPYIVAPTEAEAQCATLAKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFASPILLRHLTFSEQRKEPILEIHLDKVLEGLEMDQKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V+
Sbjct: 233 DYLDPIKGIGPSTALKLIREHKDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVL 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 293 PADAPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPI 352
Query: 298 ANTS---APIKRK 307
T+ A +KRK
Sbjct: 353 EKTAEEKATLKRK 365
>gi|327306185|ref|XP_003237784.1| flap endonuclease [Trichophyton rubrum CBS 118892]
gi|326460782|gb|EGD86235.1| flap endonuclease [Trichophyton rubrum CBS 118892]
Length = 447
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/303 (54%), Positives = 215/303 (70%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 105 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAE 164
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +CKRLL+LMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 165 EAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLELMGIPYLDAPTEAEAQCAVLARAGKV 224
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GC
Sbjct: 225 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGC 284
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HG++E ++E I +++Y IP+DWPY +AR LF P+V
Sbjct: 285 DYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPDDWPYLQARELFFNPDVR 344
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KWSAPD EGL+ FLV E GF+ DRV ++ + Q RLE FFKPV
Sbjct: 345 PADAPECDFKWSAPDVEGLVRFLVEEKGFSEDRVRNGAARLTKNLKSAQQSRLEGFFKPV 404
Query: 298 ANT 300
A T
Sbjct: 405 AKT 407
>gi|395852526|ref|XP_003798789.1| PREDICTED: flap endonuclease 1 [Otolemur garnettii]
Length = 380
Score = 337 bits (865), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+Y+FDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + +IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y IPE+W ++EA +LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPIPENWLHKEAHQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ ++++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|57099749|ref|XP_533271.1| PREDICTED: flap endonuclease 1 isoform 1 [Canis lupus familiaris]
Length = 380
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/307 (53%), Positives = 229/307 (74%), Gaps = 2/307 (0%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 52 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG +E++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 112 QQAQAAGAEEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF + +IL+EL L +QF+DLCIL G
Sbjct: 172 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLNRILQELGLNQEQFVDLCILLG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA++LF EPEV+ D
Sbjct: 232 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAQQLFLEPEVL-D 290
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E +++KWS P+EE L+ F+ E F+ +R+ + ++ ++ S+QGRL+ FFK V +
Sbjct: 291 PESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVRRLSKSRQGSTQGRLDDFFK-VTGS 349
Query: 301 SAPIKRK 307
+ KRK
Sbjct: 350 LSSAKRK 356
>gi|317376212|sp|B2VTT3.2|FEN1_PYRTR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/312 (52%), Positives = 217/312 (69%), Gaps = 7/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A
Sbjct: 53 LMSETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I+GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V
Sbjct: 233 DYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 293 PADDPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPI 352
Query: 298 ANTS---APIKR 306
T+ A +KR
Sbjct: 353 EKTAEQKATLKR 364
>gi|301117906|ref|XP_002906681.1| flap endonuclease 1 [Phytophthora infestans T30-4]
gi|317374909|sp|D0MY34.1|FEN1_PHYIT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|262108030|gb|EEY66082.1| flap endonuclease 1 [Phytophthora infestans T30-4]
Length = 389
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/308 (53%), Positives = 218/308 (70%), Gaps = 11/308 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GEVTSHLQGMF+RTIR++E G+KP+YVFDG+PP +K ELAKR +R +A L
Sbjct: 59 LTNADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALE 118
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E GN EDI++F+KR V+ T QHN+DCK LL+LMGVP + AP EAEA CAAL K G+V
Sbjct: 119 EATEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPCEAEASCAALAKGGRV 178
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA +EDMD+LTFG P R L ++KIP++E + + L+EL +T +QF+DLCIL GC
Sbjct: 179 YAAGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQELEMTHEQFVDLCILCGC 238
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ---IPEDW-----PYQEARRLFK 233
DYCDSIRG+G + A I++H SIE LE + + + + IP++W Y+ AR +F
Sbjct: 239 DYCDSIRGVGPKKAYAGIKEHKSIENFLEVLQKNKSKGVVIPDEWLGENPIYKNAREMFI 298
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
+PEVV D ++ +IKW P E L++FLV ++GF DRV AI ++K +K+ SQ RL+SF
Sbjct: 299 KPEVV-DAKETEIKWRDPQETELVDFLVKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSF 357
Query: 294 FK--PVAN 299
F P AN
Sbjct: 358 FTVMPSAN 365
>gi|328852744|gb|EGG01887.1| hypothetical protein MELLADRAFT_110505 [Melampsora larici-populina
98AG31]
Length = 385
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/295 (53%), Positives = 216/295 (73%), Gaps = 2/295 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL G F RTIR+ E G+KP YVFDG+PP LK LAKR+ KR +A ++
Sbjct: 54 LMNEAGETTSHLMGFFYRTIRMAENGIKPAYVFDGKPPQLKSGVLAKRFEKRTEAAEEGE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED++K ++RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA LCK G V
Sbjct: 114 EAKEVGTTEDLDKLTRRTVKVTREHNEECRRLLTLMGIPWVIAPSEAEAQCAELCKGGLV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y SEDMD+LTFG P LRHL +RK+P+ ++K+L L+LTM++FID CIL GC
Sbjct: 174 YGAGSEDMDTLTFGTPLLLRHLTFSEARKVPINTVNLSKVLAGLDLTMERFIDFCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVVTD 240
DY D ++G+ +TALKLI++HGS+E +++++ + + PEDWP+ EA+ LF +P+V+
Sbjct: 234 DYVDPLKGVAAKTALKLIKEHGSLEAVVDHLQQTGKNPPPEDWPWAEAKELFVKPDVIKS 293
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
E+ ++++W+ PD +GL+ FLV E GF+ +RV K K+K A + QGRL+ FFK
Sbjct: 294 ED-IKLEWNMPDVDGLVEFLVKEKGFDEERVRKGTNKLKLAMTQKQQGRLDGFFK 347
>gi|290997255|ref|XP_002681197.1| predicted protein [Naegleria gruberi]
gi|317374913|sp|D2V434.1|FEN1_NAEGR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|284094820|gb|EFC48453.1| predicted protein [Naegleria gruberi]
Length = 387
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 156/302 (51%), Positives = 220/302 (72%), Gaps = 1/302 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT++ GEVT+HLQG+ RT ++LE G+KP YVFDG+PP LK EL KR ++ +A + A
Sbjct: 53 LTDKDGEVTNHLQGLLARTTKMLEYGIKPCYVFDGKPPQLKSGELEKRKERQKEAMEQFA 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G++E + ++KRT ++TK+ ++D K+LL+LMGVPVVEAP EAEAQCA LCK G V
Sbjct: 113 LAQEEGDEEKMVMWNKRTTRMTKEQSNDGKKLLRLMGVPVVEAPGEAEAQCAELCKGGLV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LT+ P RHL +RK P+ EF +++E L +T+DQFID+CIL GC
Sbjct: 173 YATATEDMDALTYATPVLARHLTFSEARKQPIQEFTFKQVIEGLGVTVDQFIDICILCGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY DSI+GIG + AL +I+++G+IE +L+NI + YQ P ++PY+E R +FK P+V
Sbjct: 233 DYTDSIKGIGPKKALAMIKKYGNIENLLKNIEGKHYQAPSEFPYEEVRNIFKNPDVTPSS 292
Query: 242 EQLQ-IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E + +KW+ PDEEGLI FLV E F+ +RV I++IK+++ K +Q RL+ FF PVA++
Sbjct: 293 ELVDTMKWTEPDEEGLIEFLVKEKQFDEERVRGYIKRIKSSRGKPTQTRLDGFFTPVASS 352
Query: 301 SA 302
S
Sbjct: 353 ST 354
>gi|189191944|ref|XP_001932311.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973917|gb|EDU41416.1| DNA-repair protein rad2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 395
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 165/312 (52%), Positives = 217/312 (69%), Gaps = 7/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A
Sbjct: 53 LMSETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I+GIG TALKLIR+H +E ++E+I + + IP+DWP+ +AR LF EP+V
Sbjct: 233 DYLDPIKGIGPSTALKLIREHNDLEGVVEHIKSQSSKKLTIPDDWPFADARLLFLEPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 293 PADDPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPI 352
Query: 298 ANTS---APIKR 306
T+ A +KR
Sbjct: 353 EKTAEQKATLKR 364
>gi|307214986|gb|EFN89831.1| Flap endonuclease 1-B [Harpegnathos saltator]
Length = 380
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 222/307 (72%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT GE TSHL G+F RTIRL+E G+KP+YVFDG+PP+LK ELAKR +R +A L
Sbjct: 53 LTTVDGETTSHLMGIFYRTIRLVEQGIKPVYVFDGKPPNLKGGELAKRAERRDEAQKLLQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G+ E I+KF++R VKVTK H ++ K+LLKLMG+P ++AP EAEAQCAAL K+G+V
Sbjct: 113 AAEEDGDAEAIDKFNRRLVKVTKTHAEEAKQLLKLMGIPYIDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFG LR L +RK+PV E K+L L L ++FIDLCI+ GC
Sbjct: 173 FATATEDMDALTFGCNVLLRRLTFSEARKLPVQEIHFDKVLGGLELNHNEFIDLCIMLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY SI+G+G + A++LI+ H S+E I+ENI+ +++ +PEDW Y+EAR LF+EPE V++
Sbjct: 233 DYTGSIKGVGPKRAIELIKNHKSLEKIIENIDTKKFPVPEDWNYKEARLLFQEPE-VSNA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ + +KWS PDEE L+ FL + FN +RV +K+ A+N S+QGRL+SFFK + N +
Sbjct: 292 DDIVLKWSEPDEEDLVKFLCGDKQFNEERVRNGAKKLHKARNTSTQGRLDSFFKILPNPT 351
Query: 302 APIKRKV 308
P KRK
Sbjct: 352 -PTKRKT 357
>gi|330914981|ref|XP_003296859.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
gi|311330789|gb|EFQ95031.1| hypothetical protein PTT_07066 [Pyrenophora teres f. teres 0-1]
Length = 342
Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 165/310 (53%), Positives = 216/310 (69%), Gaps = 7/310 (2%)
Query: 4 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 63
+E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A EA
Sbjct: 2 SETGETTSHLMGLFYRTMRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAHAAAEEA 61
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 123
E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCAAL + G+VYA
Sbjct: 62 KETGTAEDVEKFSRRTVRVTREHNEECQRLLKLMGIPYIVAPTEAEAQCAALARGGKVYA 121
Query: 124 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 183
ASEDMD+LTF P LRHL RK P++E + K+LE L + QFIDLCIL GCDY
Sbjct: 122 AASEDMDTLTFDTPILLRHLTFSEQRKEPILEIHLDKVLEGLQMERKQFIDLCILLGCDY 181
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV-VT 239
D I+GIG TALKLIR+H +E I+E+I + + IP+DWP+ +AR LF EP+V
Sbjct: 182 LDPIKGIGPSTALKLIREHNDLEGIVEHIKSQTSKKLTIPDDWPFADARLLFLEPDVRPA 241
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
D+ + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP+
Sbjct: 242 DDPECDFKWEAPDVEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKTAQQSRLEGFFKPIEK 301
Query: 300 TS---APIKR 306
T+ A +KR
Sbjct: 302 TAEQKASLKR 311
>gi|390603405|gb|EIN12797.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 384
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 8/300 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN++GE TSHL G F RTIR++E G+KP Y+FDG+PP+LK LAKR+ KR +A ++
Sbjct: 53 MLTNDSGETTSHLMGFFYRTIRIVENGIKPAYIFDGKPPELKSGVLAKRFEKREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVT++HN++C++LL+LMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTAEDMDRFSRRTVKVTREHNEECRKLLRLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP LRHL ++K P+ E +AK LE L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILLRHLTFSEAKKTPISEINLAKALEGLQMDMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER------YQIPEDWPYQEARRLFKE 234
CDY + I+G+G +TALKLIR+HG + ++E++ RE+ QIPE WP++EA++LF++
Sbjct: 233 CDYLEPIKGVGPKTALKLIREHGGLAGVMEHL-REKGKGKGGVQIPEYWPWEEAKKLFEK 291
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P+V +E +Q++W PD EGL+ FLV E GFN +RV K EK+ N QGRL+ FF
Sbjct: 292 PDVEPADE-VQLEWKNPDVEGLVQFLVVEKGFNEERVRKGAEKLTKFLNAKQQGRLDGFF 350
>gi|119493310|ref|XP_001263845.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
gi|317374917|sp|A1D8A4.1|FEN1_NEOFI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119412005|gb|EAW21948.1| Flap endonuclease, putative [Neosartorya fischeri NRRL 181]
Length = 395
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRTLEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+HGS+E ++E I +++Y IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEDWPYQDARELFLHPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 EADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKASLKRK 365
>gi|396499081|ref|XP_003845386.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
gi|312221967|emb|CBY01907.1| similar to flap endonuclease 1 [Leptosphaeria maculans JN3]
Length = 423
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/312 (52%), Positives = 216/312 (69%), Gaps = 7/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A
Sbjct: 81 LMNESGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKTEAQAAAE 140
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+V
Sbjct: 141 EAKETGTAEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIVAPTEAEAQCAVLARGGKV 200
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P++E + K+LE L + QFIDLCIL GC
Sbjct: 201 YAAASEDMDTLTFNSPILLRHLTFSEQRKEPILEIHLDKVLEGLAMDRTQFIDLCILLGC 260
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEV- 237
DY D I+GIG TALKLIR+H +E ++++I + + IPEDWP+ +AR LF EP+V
Sbjct: 261 DYLDPIKGIGPSTALKLIREHKDLEGVVKHIQSQPKGKLTIPEDWPFADARLLFLEPDVR 320
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D+ + KW APD EGL+ FLV E F+ DRV K+ + Q RLE FFKP+
Sbjct: 321 PADDPECDFKWEAPDVEGLVKFLVEEKHFSEDRVRNGAAKLNKNMKTAQQSRLEGFFKPI 380
Query: 298 ANT---SAPIKR 306
T A +KR
Sbjct: 381 QKTEEEKASLKR 392
>gi|66811596|ref|XP_639977.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
gi|74854014|sp|Q54NU0.1|FEN1_DICDI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|60466913|gb|EAL64957.1| hypothetical protein DDB_G0284987 [Dictyostelium discoideum AX4]
Length = 384
Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 216/306 (70%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHLQGMF RTI+L+ G+KPIYVFDG P LK ELAKR ++R +A ++L
Sbjct: 54 LTNQLGETTSHLQGMFYRTIKLISRGIKPIYVFDGSAPVLKSGELAKRQARRKEAKENLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E+++KF+KR + VT++ N+DC +LL LMGVP+V+AP EAEAQCA + K G+
Sbjct: 114 EATEVGTNEEVQKFAKRVITVTRKQNEDCIKLLTLMGVPIVKAPCEAEAQCAEIVKKGKA 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMDSLT G+ LR L ++K+P++EFE+ +LE L LT D+FIDL IL GC
Sbjct: 174 WATGSEDMDSLTLGSTVLLRRLFFSEAKKMPILEFELQSVLEGLGLTQDEFIDLSILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCDSI+GIG + A++LI++H S+E +++++++ +Y +PE +PY E R LFK P V+ +
Sbjct: 234 DYCDSIKGIGPKRAIELIQKHKSLEEVIKHLDKSKYPLPEFFPYPEVRELFKNPNVIPAD 293
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +W PD EGL FLV E GF+ RV + IEK+K KN S Q R++SF +
Sbjct: 294 QLPPFQWKDPDVEGLNKFLVEEMGFSDVRVAQGIEKLKKFKNTSVQSRMDSFITVIKKPE 353
Query: 302 APIKRK 307
P +K
Sbjct: 354 DPNDKK 359
>gi|320202935|ref|NP_001188509.1| flap endonuclease-1 [Bombyx mori]
gi|268044461|gb|ACY92094.1| flap endonuclease-1 [Bombyx mori]
Length = 380
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 164/306 (53%), Positives = 222/306 (72%), Gaps = 3/306 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + GE TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L
Sbjct: 53 LVSVDGETTSHLMGTFYRTIRLVENGIKPVYVFDGKPPDMKAHQLNKRAERREEAEKELQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG+ ++KF++R VKVTKQ +++ K+LLKLMGVPVV+AP EAEAQCAAL KSG+V
Sbjct: 113 KATEAGDTASVDKFNRRLVKVTKQRSEEAKQLLKLMGVPVVDAPCEAEAQCAALVKSGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LTFGAP LRHL +RK+PV EF + +L+ L L ++FIDLCIL GC
Sbjct: 173 FAAATEDMDALTFGAPVLLRHLTFSEARKMPVQEFHLNNVLQGLELKQNEFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC SIRG+G + A+ LIRQH +++ +L+NI+ E+YQ P DW Y+ AR LF EPE V D
Sbjct: 233 DYCGSIRGVGPKRAIDLIRQHRTLDEVLKNIDTEKYQPPTDWDYERARSLFMEPE-VADP 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +++KW+ PDEEGL+ FL + FN +RV +K+ A+ ++Q RL+ FF T+
Sbjct: 292 KDIELKWTDPDEEGLVKFLCGDRQFNEERVRNGAKKLIKARTGTTQARLDGFF--TLTTT 349
Query: 302 APIKRK 307
KRK
Sbjct: 350 PNSKRK 355
>gi|395330939|gb|EJF63321.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 429
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 161/321 (50%), Positives = 224/321 (69%), Gaps = 22/321 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ KR +A +D
Sbjct: 71 LLTNDAGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKSGVLSKRFEKREEAKEDG 130
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVT++HN++C++LL LMG+P V APSEAEAQCA L + G+
Sbjct: 131 EEAKETGTAEDVDRFSRRTVKVTREHNEECRKLLTLMGIPFVVAPSEAEAQCAELARGGK 190
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTFGAP LRHL +RK P+ E + K LE L + M QF +LCIL G
Sbjct: 191 VYAAGSEDMDTLTFGAPILLRHLTFSEARKTPISEISLEKALEGLEMDMSQFTELCILLG 250
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER------------------YQIPED 222
CDY + I+G+G + ALKL+R+HG++ ++ ++ RE+ QIP++
Sbjct: 251 CDYLEPIKGVGPKGALKLLREHGTLGKVVAHL-REKAAEKEDAGEDGGKKKKGGVQIPDE 309
Query: 223 WPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK 282
WP++ A+ LF +P+ VT ++L+++W +PD EGL++FLV E GFN +RV K EK+
Sbjct: 310 WPWEAAKALFSKPD-VTPADELELEWKSPDIEGLVDFLVKEKGFNEERVRKGGEKLAKHL 368
Query: 283 NKSSQGRLESFF--KPVANTS 301
N QGRL+ FF KP A+ +
Sbjct: 369 NAKQQGRLDGFFTAKPKASPT 389
>gi|346976080|gb|EGY19532.1| DNA-repair protein rad2 [Verticillium dahliae VdLs.17]
Length = 394
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/303 (52%), Positives = 210/303 (69%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +C++LLKLMGVP + AP+EAEAQCA L K G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECQKLLKLMGVPFIIAPTEAEAQCAVLAKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P+ E + K++E L + +QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D + +G TALKLIR+H ++E +++ I + +Y +PEDWP+ +AR LF P+V
Sbjct: 233 DYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFADARELFLNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D KW PD EGL+ FLV+E GF+ DRV A +++ S Q RL+ FFK +
Sbjct: 293 PADHADCDFKWEKPDIEGLVTFLVTEKGFSEDRVRSAGARLEKNMKGSQQSRLDGFFKMM 352
Query: 298 ANT 300
T
Sbjct: 353 PKT 355
>gi|452981413|gb|EME81173.1| hypothetical protein MYCFIDRAFT_189405 [Pseudocercospora fijiensis
CIRAD86]
Length = 393
Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 218/311 (70%), Gaps = 5/311 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMNESGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA + ++G+V
Sbjct: 113 DAKEIGTAEEVEKFSRRTVRVTREHNQEAQRLLKLMGVPYIIAPTEAEAQCAVIARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LR L RK P+ E + ++LE L++ +QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFASPVLLRKLTFSEQRKEPIQEIHLDRVLEGLDMDQNQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VT 239
DY D ++GIG + AL LI++H ++E ++ I + +Y +PEDWPYQ+AR LF+EP+V
Sbjct: 233 DYLDPVKGIGPKNALALIKEHKNLEGVVAMIEKTGKYTLPEDWPYQDARVLFQEPDVRQA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
D + KW PD +GL+ FLV E GF+ DRV +++ S Q RLE FFK V
Sbjct: 293 DHPECDFKWENPDVDGLVKFLVEEKGFSEDRVRSGAARLQKNLKSSQQSRLEGFFKAVPK 352
Query: 300 T---SAPIKRK 307
T A +KRK
Sbjct: 353 TEEEKASLKRK 363
>gi|17647423|ref|NP_523765.1| flap endonuclease 1 [Drosophila melanogaster]
gi|122102839|sp|Q7K7A9.1|FEN1_DROME RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3929699|emb|CAA21320.1| EG:EG0003.3 [Drosophila melanogaster]
gi|7302871|gb|AAF57944.1| flap endonuclease 1 [Drosophila melanogaster]
gi|261260009|gb|ACX54939.1| MIP14376p [Drosophila melanogaster]
Length = 385
Score = 333 bits (854), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 212/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV D + + +
Sbjct: 238 IKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-DADSIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST 350
>gi|169599851|ref|XP_001793348.1| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
gi|160705335|gb|EAT89482.2| hypothetical protein SNOG_02751 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 165/316 (52%), Positives = 220/316 (69%), Gaps = 8/316 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L +E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A
Sbjct: 33 ILMSETGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAHAAA 92
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+
Sbjct: 93 EEAKETGTAEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIIAPTEAEAQCATLARGGK 152
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMD--QFIDLCIL 178
VYA ASEDMD+LTF P LRHL RK P++E + K+LE L + + QFIDLCIL
Sbjct: 153 VYAAASEDMDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLEGLEMEREQPQFIDLCIL 212
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPE 236
GCDY D I+GIG TALKLIR H ++E ++ +I ++++ +PEDWP+ +AR+LF EP+
Sbjct: 213 LGCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADARQLFLEPD 272
Query: 237 VV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
V D + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFK
Sbjct: 273 VCPADAPECDFKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFK 332
Query: 296 PVANT---SAPIKRKV 308
PV T A +KRK
Sbjct: 333 PVERTPEEKASLKRKA 348
>gi|317374948|sp|Q0UZR3.3|FEN1_PHANO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 396
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/315 (52%), Positives = 219/315 (69%), Gaps = 8/315 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A
Sbjct: 53 LMSETGETTSHLMGLFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAHAAAE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++C+RLLKLMG+P + AP+EAEAQCA L + G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNEECRRLLKLMGIPFIIAPTEAEAQCATLARGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMD--QFIDLCILS 179
YA ASEDMD+LTF P LRHL RK P++E + K+LE L + + QFIDLCIL
Sbjct: 173 YAAASEDMDTLTFNTPILLRHLTFSEQRKEPILEIHLDKVLEGLEMEREQPQFIDLCILL 232
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEV 237
GCDY D I+GIG TALKLIR H ++E ++ +I ++++ +PEDWP+ +AR+LF EP+V
Sbjct: 233 GCDYLDPIKGIGPSTALKLIRDHKTLEGVVAHIQSDQKKLTLPEDWPFADARQLFLEPDV 292
Query: 238 V-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
D + KW APD EGL+ FLV E FN DRV K++ + Q RLE FFKP
Sbjct: 293 CPADAPECDFKWEAPDIEGLVKFLVEEKHFNEDRVRNGAAKLQKNMKSAQQSRLEGFFKP 352
Query: 297 VANT---SAPIKRKV 308
V T A +KRK
Sbjct: 353 VERTPEEKASLKRKA 367
>gi|194882401|ref|XP_001975300.1| GG22240 [Drosophila erecta]
gi|317374889|sp|B3NP61.1|FEN1_DROER RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190658487|gb|EDV55700.1| GG22240 [Drosophila erecta]
Length = 387
Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 213/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L++ +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLSINSREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV + E + +
Sbjct: 238 IKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-NAESIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW PDEEGL+ FL + F+ +RV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST 350
>gi|195155221|ref|XP_002018504.1| GL16728 [Drosophila persimilis]
gi|317374892|sp|B4GIM3.1|FEN1_DROPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194114300|gb|EDW36343.1| GL16728 [Drosophila persimilis]
Length = 386
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 214/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ +IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + +
Sbjct: 238 IKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADASAIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW+ PDEEGL+ FL + F+ +RV +K+ +K+ +Q RL+SFFK + +T
Sbjct: 297 KWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLLKSKHAQTQVRLDSFFKTLPST 350
>gi|195488056|ref|XP_002092153.1| GE14031 [Drosophila yakuba]
gi|317374898|sp|B4P5U9.1|FEN1_DROYA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194178254|gb|EDW91865.1| GE14031 [Drosophila yakuba]
Length = 387
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/294 (53%), Positives = 214/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ IEKF++R V+VTK+H ++ K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHANEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L++ +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYEKLLEGLSINSREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV + + + +
Sbjct: 238 IKGIGPKRAIELINNYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-NADNIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW PDEEGL+ FL + F+ +RV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWVEPDEEGLVKFLCGDRQFSEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST 350
>gi|198477405|ref|XP_002136633.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
gi|317374893|sp|B5DUR8.1|FEN1_DROPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|198142925|gb|EDY71637.1| GA27689 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 214/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ +IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAEIEKFNRRLVRVTKEHAREAKELLSLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLEVNNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D + +
Sbjct: 238 IKGIGPKRAIELINNYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADASAIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW+ PDEEGL+ FL + F+ +RV +K+ +K+ +Q RL+SFFK + +T
Sbjct: 297 KWTEPDEEGLVKFLCGDRQFSEERVRNGAKKLFKSKHAQTQVRLDSFFKTLPST 350
>gi|348688657|gb|EGZ28471.1| hypothetical protein PHYSODRAFT_294028 [Phytophthora sojae]
Length = 390
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/317 (52%), Positives = 219/317 (69%), Gaps = 12/317 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GEVTSHLQGMF+RTIR++E G+KP+YVFDG+PP +K ELAKR +R +A L
Sbjct: 59 LTNADGEVTSHLQGMFSRTIRMMENGLKPVYVFDGKPPVMKSGELAKRSDRRQEAQKALE 118
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E GN EDI++F+KR V+ T QHN+DCK LL+LMGVP + AP EAEA CA L K G+V
Sbjct: 119 EATEKGNAEDIDRFNKRLVRATPQHNEDCKELLRLMGVPHITAPCEAEASCAELAKGGRV 178
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA +EDMD+LTFG P R L ++KIP++E + + L+EL LT +QF+DLCIL GC
Sbjct: 179 YAAGTEDMDALTFGVPVLYRRLTVSPAKKIPILEIRLERALQELELTQEQFVDLCILCGC 238
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ---IPEDW-----PYQEARRLFK 233
DYCDSIRG+G + A I++H +IE LE + + + + IP++W Y+ AR +F
Sbjct: 239 DYCDSIRGVGPKKAFAGIKEHKNIENFLEALQKNKSKGVVIPDEWLGENPIYKSAREMFI 298
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
+PEVV +E ++KW P E L++FL ++GF DRV AI ++K +K+ SQ RL+SF
Sbjct: 299 KPEVVNAKEA-ELKWRDPQETELLDFLCKKHGFQEDRVLSAITRLKKSKSTQSQKRLDSF 357
Query: 294 FK--PVANTSAPIKRKV 308
F P A SA KRK
Sbjct: 358 FTVLPSAGGSAK-KRKA 373
>gi|317374927|sp|Q4WWJ1.2|FEN1_ASPFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 EADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKASLKRK 365
>gi|317374932|sp|B0XZ33.2|FEN1_ASPFC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 395
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 EADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKASLKRK 365
>gi|296411549|ref|XP_002835493.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629277|emb|CAZ79650.1| unnamed protein product [Tuber melanosporum]
Length = 481
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/309 (54%), Positives = 221/309 (71%), Gaps = 5/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL G+F RT+R+++ G+KP+YVFDG+PP LK ELAKR +++A+AT A
Sbjct: 148 LTSETGETTSHLMGLFYRTLRMVDNGIKPLYVFDGRPPTLKSGELAKRSARKAEATAAHA 207
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VTK+ ND+CKRLL MG+P VEAP EAEAQCAAL K+G+V
Sbjct: 208 EAKEVGTAEEVEKFSRRTVRVTKEINDECKRLLTCMGIPYVEAPCEAEAQCAALAKAGKV 267
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA AS+DMD+L F P L+ LM +K PV E + + ++EL T DQFIDLCIL GC
Sbjct: 268 YAAASDDMDTLCFETPILLKKLMLSEMKKEPVQEIYLDRAMQELGFTRDQFIDLCILLGC 327
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+I +G TALKLIR+H SIE +L ++ +Y +P+ WPYQ+AR LFK P ++TD
Sbjct: 328 DYCDTIPKVGPTTALKLIREHKSIENVLSHLG-PKYAVPKKWPYQDARELFKNP-LITDP 385
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
++ + KW APD + L+ FLV E GFN DRV K+ ++Q R+ FFKPV T+
Sbjct: 386 DECEFKWEAPDIDKLVAFLVGEKGFNEDRVRAGAVKLSKNLKGNTQARVNDFFKPVPKTA 445
Query: 302 ---APIKRK 307
A +KRK
Sbjct: 446 EELAGLKRK 454
>gi|195584050|ref|XP_002081828.1| GD25512 [Drosophila simulans]
gi|317374895|sp|B4QIG6.1|FEN1_DROSI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194193837|gb|EDX07413.1| GD25512 [Drosophila simulans]
Length = 385
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 212/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV + + + +
Sbjct: 238 IKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-NADSIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST 350
>gi|50556476|ref|XP_505646.1| YALI0F20042p [Yarrowia lipolytica]
gi|74632421|sp|Q6C116.1|FEN1_YARLI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49651516|emb|CAG78455.1| YALI0F20042p [Yarrowia lipolytica CLIB122]
Length = 389
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/308 (52%), Positives = 216/308 (70%), Gaps = 15/308 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA---TD 58
LTNE GE TSHL GMF RT+R+++ G+KP+YVFDG+PP LK ELAKR +R +A +
Sbjct: 54 LTNENGETTSHLMGMFYRTLRMVDNGIKPVYVFDGKPPVLKSGELAKRKERREEALKKIE 113
Query: 59 DLAEAVEAGN--------KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEA 110
+L + VE G +ED+ +F KRTV+VT + ND+ K+LL LMG+P+VEAP EAEA
Sbjct: 114 ELKQQVEDGEEGEETKEAQEDVTRFEKRTVRVTPEQNDEAKKLLTLMGIPIVEAPCEAEA 173
Query: 111 QCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMD 170
QCA L ++G+VYA ASEDMD+L FG+P LRHL ++K+P+ E AKILE L +T
Sbjct: 174 QCAKLAEAGKVYAAASEDMDTLCFGSPVLLRHLTFSEAKKMPISEINFAKILEGLEMTHA 233
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQE 227
QFIDLCIL GCDY D+IRG+G QTALKL+++HGS+E I+E+I + + ++PE+WPYQE
Sbjct: 234 QFIDLCILLGCDYADTIRGVGPQTALKLMKEHGSLEKIVEHIEKNPSGKLKVPENWPYQE 293
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
R L + P+V+ D IKW+ PD EGL++FLV + GF+ DRV ++ Q
Sbjct: 294 VRALLQAPDVL-DSSSCDIKWNNPDVEGLVDFLVRDKGFSEDRVRAGAARLMKQVKVKPQ 352
Query: 288 GRLESFFK 295
RL+ FFK
Sbjct: 353 ARLDGFFK 360
>gi|195335051|ref|XP_002034189.1| GM20026 [Drosophila sechellia]
gi|317374894|sp|B4HTA1.1|FEN1_DROSE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194126159|gb|EDW48202.1| GM20026 [Drosophila sechellia]
Length = 385
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/294 (53%), Positives = 212/294 (72%), Gaps = 1/294 (0%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L A +A
Sbjct: 58 GDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALKAATDA 117
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ IEKF++R V+VTK+H + K LL LMGVP V+AP EAEAQCAAL K+G+VYA A+
Sbjct: 118 GDDAGIEKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATAT 177
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFG+ + LR+L +RK+PV EF K+LE L + +FIDLCIL GCDYC+S
Sbjct: 178 EDMDALTFGSTKLLRYLTYSEARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYCES 237
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPEV + + + +
Sbjct: 238 IKGIGPKRAIELINTYRDIETILDNLDSSKYTVPENWNYKVARELFIEPEVA-NADSIDL 296
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
KW PDEEGL+ FL + FN +RV +K+ +K +Q RL+SFFK + +T
Sbjct: 297 KWVEPDEEGLVKFLCGDRQFNEERVRNGAKKLMKSKQAQTQVRLDSFFKTLPST 350
>gi|159128014|gb|EDP53129.1| Flap endonuclease, putative [Aspergillus fumigatus A1163]
Length = 394
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 52 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 111
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 112 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 171
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 172 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V
Sbjct: 232 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVR 291
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 292 EADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 351
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 352 ARTDEEKASLKRK 364
>gi|71000637|ref|XP_755000.1| Flap endonuclease Rad27 [Aspergillus fumigatus Af293]
gi|66852637|gb|EAL92962.1| Flap endonuclease Rad27, putative [Aspergillus fumigatus Af293]
Length = 394
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 52 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 111
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 112 EAKETGTAEDVEKFSRRTVRVTREHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 171
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P+ E + + LE L + QFIDLCIL GC
Sbjct: 172 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPIQEIHLNRALEGLGMDRKQFIDLCILLGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+HGS+E ++E I +++Y IPE WPYQ+AR LF P+V
Sbjct: 232 DYLEPIPKVGPNTALKLIREHGSLEKVVEAIENDPKKKYVIPEYWPYQDARELFLHPDVR 291
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW APD E L+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 292 EADHPECDFKWEAPDVEALVEFLVKDKGFNEDRVRNGATRLQKNLKTAQQSRLEGFFKPV 351
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 352 ARTDEEKASLKRK 364
>gi|170111659|ref|XP_001887033.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374862|sp|B0DSN9.1|FEN11_LACBS RecName: Full=Flap endonuclease 1-A; Short=FEN-1-A; AltName:
Full=Flap structure-specific endonuclease 1-A
gi|164638076|gb|EDR02356.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 394
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 158/309 (51%), Positives = 228/309 (73%), Gaps = 7/309 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE TSHL G+F RT+R++E G+KP Y+FDG+PP+LKK L+KR +R +A ++
Sbjct: 53 LLTNDAGETTSHLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKRLERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVT++HN++C+RLL+LMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTVEDVDRFSRRTVKVTREHNEECRRLLRLMGIPVVIAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + + LE L++ M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLKEALEGLDMNMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPE 236
CDY + I+G+G ++ALKLIR++G ++ ++ EN QIP++WP++EA+++F++P+
Sbjct: 233 CDYLEPIKGVGPKSALKLIREYGGLKGVVKHLRENSGCRGMQIPDEWPWEEAKKIFEKPD 292
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF-- 294
V+ +E ++++W+ PD +GL+ FLV E GFN DRV K EK++ N QGRL+ FF
Sbjct: 293 VLPADE-VELEWTNPDVDGLVQFLVKEKGFNEDRVRKGAEKLQKFLNSKQQGRLDGFFSV 351
Query: 295 KPVANTSAP 303
KP +AP
Sbjct: 352 KPKEKAAAP 360
>gi|449299844|gb|EMC95857.1| hypothetical protein BAUCODRAFT_109503 [Baudoinia compniacensis
UAMH 10762]
Length = 393
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 151/296 (51%), Positives = 208/296 (70%), Gaps = 2/296 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL G+F RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMSDTGETTSHLMGLFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQESHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVEKFSRRTVRVTREHNAEAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P+ E + +L L + + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFNSPVLLRHLTFSEQRKEPIQEIHLDAVLSGLEMDLPQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VT 239
DY D ++GIG + AL LIR+H ++E ++E++ + +Y P+DWPYQ+AR LF EP+V
Sbjct: 233 DYVDPVKGIGPKVALALIREHKTLEKVVESVTKSGKYTFPDDWPYQDARLLFLEPDVRPA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
D + W+ PD +GL+ FLV E GFN DRV +++ S Q RLE FFK
Sbjct: 293 DAPECDFHWNGPDVDGLVKFLVEEKGFNEDRVRSGAARLQKNLKSSQQARLEGFFK 348
>gi|428169402|gb|EKX38336.1| flap endonuclease 1 [Guillardia theta CCMP2712]
Length = 435
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 157/300 (52%), Positives = 214/300 (71%), Gaps = 2/300 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ +GE TSHLQG F RTI +++AG++P+YVFDG+PP LK E+A R +R + L
Sbjct: 85 LTSASGEETSHLQGFFWRTIAMVKAGIRPLYVFDGKPPSLKSGEIASRNLRRDEGAKRLQ 144
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E GN E++ KF+KRT +VTKQH ++CKRLL+L+GVP V+APSEAEAQCAAL K+G V
Sbjct: 145 EATEEGNVEEMNKFAKRTTRVTKQHAEECKRLLRLLGVPTVDAPSEAEAQCAALAKNGLV 204
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+L G+P +R L +RK+PV+E+ + ++L L L M QF+D CIL GC
Sbjct: 205 YASATEDMDALCCGSPILVRRLTMSEARKLPVLEYHLDQVLSSLGLNMTQFVDFCILCGC 264
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ ++I+GIG ++AL IR+HG+IE+ +E++N ++ +P+ +P E R+L PEVV D
Sbjct: 265 DFSETIKGIGPKSALHGIRKHGNIESFIESLNTSKFVVPDPFPIDEIRQLLTTPEVV-DM 323
Query: 242 EQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
L I W+A PDEEGLI FLV E GF+ RV +E IK AK QG+L+ FF P T
Sbjct: 324 GNLSIDWNAEPDEEGLIEFLVKEKGFSEKRVRGGLEAIKKAKMVKPQGKLDMFFSPKKTT 383
>gi|238506000|ref|XP_002384202.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|317151109|ref|XP_001824453.2| DNA repair protein rad2 [Aspergillus oryzae RIB40]
gi|317374884|sp|B8NV37.1|FEN1_ASPFN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220690316|gb|EED46666.1| Flap endonuclease Rad27, putative [Aspergillus flavus NRRL3357]
gi|391868743|gb|EIT77953.1| 5'-3' exonuclease [Aspergillus oryzae 3.042]
Length = 395
Score = 329 bits (844), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT+ HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTRDHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P++E +++ LE L++ QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+ GS+E ++E++ +++Y IPEDWPYQ+AR LF P+V
Sbjct: 233 DYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPEDWPYQDARELFLNPDVR 292
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 293 EASHPDCDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 352
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 353 ARTDEEKANLKRK 365
>gi|398396234|ref|XP_003851575.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
gi|339471455|gb|EGP86551.1| hypothetical protein MYCGRDRAFT_100567 [Zymoseptoria tritici
IPO323]
Length = 393
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 156/311 (50%), Positives = 215/311 (69%), Gaps = 5/311 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A +
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKSEAQESHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN + +RLLKLMG+P + AP+EAEAQCA L + G+V
Sbjct: 113 EAKETGTAEDVEKFSRRTVRVTREHNAEAQRLLKLMGIPYIIAPTEAEAQCAVLARGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+LTF +P +R L RK PV E + ++LE L + QFID CIL GC
Sbjct: 173 FAAASEDMDTLTFASPVLVRKLTFAEQRKEPVQEIHLDRVLEGLEMDQTQFIDFCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEV-VT 239
DY D ++GIG ++AL LI++H ++E ++ I + +Y +PEDWPYQ+AR+LF EP+V
Sbjct: 233 DYLDPVKGIGPKSALALIKEHKTLENVVVYIEKSGKYTLPEDWPYQDARQLFLEPDVRQA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
DE + + KW APD +GL+ FLV E GF+ DRV +++ Q RLE FFK
Sbjct: 293 DEPECEFKWEAPDVDGLVKFLVEEKGFSEDRVRSGASRLQKNLKSGQQSRLEGFFKVQEK 352
Query: 300 TS---APIKRK 307
T A +KRK
Sbjct: 353 TDEQKASLKRK 363
>gi|344233741|gb|EGV65611.1| PIN domain-like protein [Candida tenuis ATCC 10573]
Length = 376
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 214/311 (68%), Gaps = 5/311 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE+TSHL GMF RT+R++E G+KP+YVFDG+PP LK EL KRY ++ +A +
Sbjct: 54 LTNDKGEITSHLSGMFYRTLRMVENGIKPVYVFDGKPPVLKGGELEKRYLRKEEAIKKME 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ EDI KF KR V+V+++HND+ K+LL+LMG+P + AP EAEAQCA L + G+V
Sbjct: 114 DAKEEGSAEDILKFEKRMVRVSREHNDEAKKLLELMGIPYINAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD++ + P LRHL +RKIP+ + + +E + FIDLCIL GC
Sbjct: 174 FAAASEDMDTICYSPPYLLRHLTFSEARKIPIDQIDCKTAIEGFEMDKKTFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGSI+ I++ IN + +Y++PE+WPY+EAR LF P+
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSIDNIVKFINDNPDKTKYKLPENWPYEEARELFLNPD- 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+T +L KW PD EG+I F+V++ GF+ DRV EK+K QGRL+ FFK V
Sbjct: 293 ITPCSELSFKWKEPDLEGMIEFMVNDKGFSEDRVKSGYEKLKKGLKTGVQGRLDGFFKVV 352
Query: 298 ANTSAPIKRKV 308
KRK
Sbjct: 353 PKKEDDKKRKA 363
>gi|83773193|dbj|BAE63320.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 359
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 17 LMSDTGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTARKAEATEAHE 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT+ HN +CK+LLKLMG+P ++AP+EAEAQCA L ++G+V
Sbjct: 77 EAKETGTAEDVEKFSRRTVRVTRDHNAECKKLLKLMGIPYIDAPTEAEAQCAVLARAGKV 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F AP LRHL RK P++E +++ LE L++ QFIDLCIL GC
Sbjct: 137 YAAASEDMDTLCFEAPILLRHLTFSEQRKEPILEIHLSRALEGLDMDRKQFIDLCILLGC 196
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY + I +G TALKLIR+ GS+E ++E++ +++Y IPEDWPYQ+AR LF P+V
Sbjct: 197 DYLEPIPKVGPNTALKLIREFGSLEKVVEHMESDPKKKYVIPEDWPYQDARELFLNPDVR 256
Query: 239 -TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
KW APD EGL+ FLV + GFN DRV +++ + Q RLE FFKPV
Sbjct: 257 EASHPDCDFKWEAPDIEGLVEFLVKDKGFNEDRVRNGAARLQKNLKTAQQSRLEGFFKPV 316
Query: 298 ANTS---APIKRK 307
A T A +KRK
Sbjct: 317 ARTDEEKANLKRK 329
>gi|353235791|emb|CCA67798.1| probable DNA repair endonuclease rad2 [Piriformospora indica DSM
11827]
Length = 366
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/324 (48%), Positives = 221/324 (68%), Gaps = 20/324 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL G F RTIR++E G+KP YVFDG+PP+LK LAKR+ +R +A ++
Sbjct: 18 LQNEQGETTSHLMGFFYRTIRMVENGIKPCYVFDGKPPELKSGVLAKRFERREEAKEEGD 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+R V+VTK+HN++C++LL LMG+PVV APSEAEAQCA L + G V
Sbjct: 78 EAKEVGTTEEVEKFSRRQVRVTKEHNEECRKLLGLMGIPVVVAPSEAEAQCAELARGGLV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y SEDMD+LTF +P LRHL +RK P++E + +LE L + M QF++LCIL GC
Sbjct: 138 YGAGSEDMDTLTFNSPILLRHLTFSENRKEPILEISLPAVLEGLEMDMPQFVELCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRER------------------YQIPEDW 223
DY + I+G+G ++ALKL+R+HGS+ ++E++ ++ +PE+W
Sbjct: 198 DYLEPIKGVGPKSALKLLREHGSLGAVVEHLRSKQASREDADEEGEGKKKKGGVHVPEEW 257
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN 283
P++ A+ LF +P+ VT + +++W APD +GL+ FLV+E GFN DRV K EK+
Sbjct: 258 PWERAKDLFLQPD-VTPADSFELEWKAPDLDGLVQFLVTEKGFNEDRVRKGAEKLTKHIG 316
Query: 284 KSSQGRLESFFKPVANTSAPIKRK 307
QGRL+SFFK VA + P K++
Sbjct: 317 AKQQGRLDSFFK-VAPKAVPEKKE 339
>gi|339253602|ref|XP_003372024.1| flap endonuclease 1a [Trichinella spiralis]
gi|316967624|gb|EFV52031.1| flap endonuclease 1a [Trichinella spiralis]
Length = 381
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/303 (50%), Positives = 217/303 (71%), Gaps = 11/303 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE----------LAKRYS 51
L+ E+GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK E L KR
Sbjct: 53 LSAESGETTSHLIGMFYRTIRMVENGIKPVYVFDGKPPVLKSDEVHFLICTFVSLDKRTE 112
Query: 52 KRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQ 111
+R +A + A+AV+AG+ E I KFS+R KV+K+H D+CKRLLKLMG+P +EAP EAEAQ
Sbjct: 113 RRTEAEEKYADAVQAGDSEAINKFSRRLTKVSKEHVDECKRLLKLMGIPYIEAPCEAEAQ 172
Query: 112 CAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 171
CAAL K+ +V+A A+EDMD+LTFG+ LR+L ++K+P+ EF +L LN+T ++
Sbjct: 173 CAALVKAKKVFAAATEDMDTLTFGSDIMLRYLTFSEAKKMPIKEFRFDDVLHGLNMTHEE 232
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
F+D CIL GCDYC +I+G+G + A LI+Q+ ++E I+E +++++Y IPE+W Y+ R+L
Sbjct: 233 FVDFCILLGCDYCPTIKGVGPKKAYDLIKQYRNLEVIVEKLDKKKYPIPENWQYKAVRKL 292
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F EPEV+ D +++ W PDE+GLI FLV+E F +RV K+ +A+ S+QGR++
Sbjct: 293 FLEPEVI-DCNTIELTWKDPDEQGLITFLVNEKNFGHNRVVNGCAKLLSARRSSTQGRID 351
Query: 292 SFF 294
SFF
Sbjct: 352 SFF 354
>gi|195431204|ref|XP_002063637.1| GK21315 [Drosophila willistoni]
gi|317374897|sp|B4MR84.1|FEN1_DROWI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194159722|gb|EDW74623.1| GK21315 [Drosophila willistoni]
Length = 388
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/299 (53%), Positives = 216/299 (72%), Gaps = 1/299 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L G+ TSHL GMF RTIRLL+ G+KP+YVFDG+PPDLK ELAKR +R +A L
Sbjct: 53 LATVNGDPTSHLMGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAERREEAEKALK 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAG++ +IEKF++R V+VTK+H + K LLKLMGVP V+AP EAEAQCAAL K+G+V
Sbjct: 113 AATEAGDEAEIEKFNRRLVRVTKEHAREAKELLKLMGVPYVDAPCEAEAQCAALVKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTFG+ + LR+L +RK+PV EF K+L+ L L +FIDLCIL GC
Sbjct: 173 YATATEDMDALTFGSSKLLRYLTYSEARKMPVKEFTYEKLLQGLELNQREFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC+SI+GIG + A++LI + IETIL+N++ +Y +PE+W Y+ AR LF EPE V D
Sbjct: 233 DYCESIKGIGPKRAIELINSYRDIETILDNLDTSKYTVPENWNYKVARELFIEPE-VADA 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+ +KW+ PDEEGL+ FL E F+ +RV +K+ +K +Q RL+SFF+ + ++
Sbjct: 292 SAIDLKWTEPDEEGLVKFLCGERQFSEERVRGGAKKLLKSKKAQTQVRLDSFFQTLPSS 350
>gi|452840124|gb|EME42062.1| hypothetical protein DOTSEDRAFT_174868 [Dothistroma septosporum
NZE10]
Length = 393
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/295 (51%), Positives = 207/295 (70%), Gaps = 2/295 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++++A D
Sbjct: 53 LMSDTGETTSHLMGMFYRTLRIVDNGIKPLYVFDGAPPKLKSGELAKRFQRKSEAQADHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN + +RLLKLMGVP + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVEKFSRRTVRVTREHNAEAQRLLKLMGVPFIIAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF +P LRHL RK P+ E + ++LE L + QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLTFDSPVLLRHLTFSEQRKEPIQEIFLDRVLEGLEMDQKQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINR-ERYQIPEDWPYQEARRLFKEPEV-VT 239
DY D ++GIG + AL+LI++H ++E ++E I + +Y +PEDWP+ +AR LF EP+V
Sbjct: 233 DYLDPVKGIGPKVALELIKKHKTLENVVEEIKKGSKYTLPEDWPFADARALFLEPDVHKA 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
D KW +PD EGL+ FLV E GF+ DRV ++ S Q RLE FF
Sbjct: 293 DHPDCDFKWESPDVEGLVKFLVEEKGFSEDRVRSGAARLSKNMKSSQQARLEGFF 347
>gi|392591810|gb|EIW81137.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 437
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 161/334 (48%), Positives = 233/334 (69%), Gaps = 28/334 (8%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PPDLK L+KR+ KR +A ++
Sbjct: 84 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKSGVLSKRFEKREEAKEEG 143
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTV+VTK+HN++C+RLL+LMG+PV+ APSEAEAQCA L + G+
Sbjct: 144 EEAKETGTAEDVDRFSRRTVRVTKEHNEECRRLLRLMGIPVIVAPSEAEAQCAELARGGK 203
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP LRHL ++K P+ E + + L+ L + M QFIDLCIL G
Sbjct: 204 VYAAGSEDMDTLTFHAPVLLRHLTFSEAKKAPISEIHLERALQGLEMDMSQFIDLCILLG 263
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN-------------------------RE 215
CDY + I+G+G ++ALKLIR++G ++ ++E++
Sbjct: 264 CDYLEPIKGVGPKSALKLIREYGGLKGVVEHLREKQAEKAEAAAAAAEEDGKDGKKKKSG 323
Query: 216 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
Q+PE+WP++EA++LF++P+V+ +E ++++W PD +GL+ FLV+E GFN +RV K
Sbjct: 324 GIQVPEEWPWEEAKKLFEKPDVLPADE-VELEWKDPDVDGLVRFLVTEKGFNEERVRKGA 382
Query: 276 EKIKAAKNKSSQGRLESFF--KPVANTSAPIKRK 307
EK++ N QGRL+ FF KP ++S+P K++
Sbjct: 383 EKLQRFLNTKQQGRLDGFFTVKPKDSSSSPPKKR 416
>gi|300120156|emb|CBK19710.2| unnamed protein product [Blastocystis hominis]
Length = 370
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/297 (51%), Positives = 221/297 (74%), Gaps = 5/297 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN GEVTSH+QG+ ++TI+L+E G+KP++VF+G+PP++K+ EL +R R A ++L
Sbjct: 56 MLTNAEGEVTSHIQGILSKTIKLMEDGIKPVFVFEGKPPEMKQNELERRKQLREKAEEEL 115
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EA N+E+IEK SKRTV + H +DCK LL+LMGVPV++A SEAE+QCA L K +
Sbjct: 116 KDAKEAENQEEIEKLSKRTVHMEGGHINDCKELLRLMGVPVIDAASEAESQCAELAKKKK 175
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---PVMEFEVAKILEELNLTMDQFIDLCI 177
V+A+ASEDMDSLTFG P +RHL K ++E ++A++LE + L+MD+FIDLCI
Sbjct: 176 VWAMASEDMDSLTFGTPVLIRHLTKSQGAKKDAQSILEVDLAEVLEAMKLSMDEFIDLCI 235
Query: 178 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 237
L GCDYCD IRGIG A + I+++ +IE ++EN+ ++YQ+PE+WPYQ+AR LFK P +
Sbjct: 236 LCGCDYCDGIRGIGQVKAYQFIQKYRTIEKVIENLT-DKYQVPENWPYQKARELFKNP-L 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
VT E++++K+ D +GL+ FLV GFN++RV I+++ A++K Q R++SFF
Sbjct: 294 VTPAEEIEVKFGEVDRKGLVEFLVDAKGFNAERVDNYIDRLIKARSKCQQKRMDSFF 350
>gi|449549056|gb|EMD40022.1| hypothetical protein CERSUDRAFT_132799 [Ceriporiopsis subvermispora
B]
Length = 409
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 221/311 (71%), Gaps = 19/311 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ +R +A ++
Sbjct: 53 LLTNDAGETTSHLMGFFYRTIRMVENGIKPAYVFDGKPPELKAGVLSKRFERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+E+F++RTVKVTK+HN++C+RLL LMG+P V APSEAEAQCA L + G+
Sbjct: 113 EEAKEVGTAEDVERFTRRTVKVTKEHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF +P LRHL +RK P+ E + K L+ L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFASPILLRHLTFSEARKTPISEINLQKALDGLEMNMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERY-----------------QIPEDW 223
CDY + I+G+G ++ALKLI++HGS+ ++E++ RE+ QIP++W
Sbjct: 233 CDYLEPIKGVGPKSALKLIKEHGSLGNVIEHL-REKVAAKEEAAEDGKKKKGGIQIPDEW 291
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN 283
P++EA++ F++P+V+ +Q++++W PD EGL+ FLV E GFN +RV K EK+ N
Sbjct: 292 PWEEAKKFFEKPDVMP-ADQVELEWKNPDVEGLVEFLVKEKGFNEERVRKGAEKLTKFLN 350
Query: 284 KSSQGRLESFF 294
QGRL+ FF
Sbjct: 351 AKQQGRLDGFF 361
>gi|393232393|gb|EJD39975.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 400
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/311 (50%), Positives = 225/311 (72%), Gaps = 17/311 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNEAGE TSHL G F RTIR++E G+KP YVFDG+PP+LK L+KR+ +R +A ++
Sbjct: 53 LLTNEAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKSGVLSKRFERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+E+F++RTVKVT++HN++C+RLL+LMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKEVGTAEDVERFTRRTVKVTREHNEECRRLLRLMGIPVVIAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTFGAP RHL ++K P+ E ++ K L+ LN+TMDQFI+LC+L G
Sbjct: 173 VYAAGSEDMDTLTFGAPILYRHLTFSEAKKQPISEIDLQKALDGLNMTMDQFIELCLLLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER----------------YQIPEDWP 224
CDY + I+G+G ++ALK +R+ GS++ I++++ ++ Q+PE WP
Sbjct: 233 CDYLEPIKGVGPKSALKYMREMGSLDKIVDHLREKQADRDEAVDAGKAKKGGVQVPEHWP 292
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
++EA++LF +P+ VT ++++++W PD +GL++FLV E GFN DRV K EK+
Sbjct: 293 WEEAKKLFIKPD-VTPADEVELEWKNPDVDGLVDFLVKEKGFNEDRVRKGAEKLTKFLAA 351
Query: 285 SSQGRLESFFK 295
QGRL+ FFK
Sbjct: 352 KQQGRLDGFFK 362
>gi|170593271|ref|XP_001901388.1| Flap endonuclease-1 [Brugia malayi]
gi|317374878|sp|A8QCH0.1|FEN1_BRUMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|158591455|gb|EDP30068.1| Flap endonuclease-1, putative [Brugia malayi]
Length = 378
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 217/307 (70%), Gaps = 2/307 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +R +A
Sbjct: 53 LQTESGETTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRTERRTEAEKQRN 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G++ + KF KR VKVTK+ +++ KRL+ LMG+PV++AP EAEAQCAAL K+G+V
Sbjct: 113 DAVELGDETSVNKFEKRLVKVTKEQSEEAKRLVTLMGIPVLDAPCEAEAQCAALAKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMD+LTFG+P LR ++ ++K+PV E + ++L++ + M QF+DLCIL GC
Sbjct: 173 FATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +IRGIG + A +LI+++ IE +LE IN+ +Y IP+DW Y+EARRLF EP+V+ +
Sbjct: 233 DYVSTIRGIGPKKAFELIKKYECIENVLETINQTKYPIPQDWQYKEARRLFLEPDVM-NC 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK-PVANT 300
E L++ W PD EG++ FL E FN DRV ++ +++ + + Q R++SFF T
Sbjct: 292 ENLELVWKEPDVEGIVQFLCVEKSFNEDRVRGSLTRMQKGRQAAQQARIDSFFSVSKVVT 351
Query: 301 SAPIKRK 307
S KRK
Sbjct: 352 SETTKRK 358
>gi|330689547|pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
gi|330689551|pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 159/296 (53%), Positives = 221/296 (74%), Gaps = 6/296 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 51 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 110
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 111 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 170
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 171 VYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 230
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 231 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 289
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-LESFFK 295
E +++KWS P+EE LI F+ E F+ +R+ ++++ +KS QG LE F+
Sbjct: 290 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRL----SKSRQGSTLEVLFQ 341
>gi|444323335|ref|XP_004182308.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
gi|387515355|emb|CCH62789.1| hypothetical protein TBLA_0I01290 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/307 (52%), Positives = 213/307 (69%), Gaps = 12/307 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR +RA+ LA
Sbjct: 54 LTNENGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRSERRAETEKQLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + K K +R VKVTK+HN++ K+LL LMG+P + APSEAEAQCA L K+G V
Sbjct: 114 EAQDIAEKI---KHERRLVKVTKEHNEEAKKLLGLMGIPYITAPSEAEAQCAELAKAGVV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E +V +L L+LT++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRVPHLLRHLTFSEAKKEPIHELDVEVVLRGLDLTIEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE--------RYQIPEDWPYQEARRLFK 233
DYCDSIRG+G TALKLI++ GS+E I+E+ + E +Y+IPE+WPY+EAR LF
Sbjct: 231 DYCDSIRGVGPVTALKLIKEFGSLEKIVEHFSEENEQKGGKSKYKIPENWPYKEARELFT 290
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
P+V+ ++ +++KW+ P EE LI FL +E F+ DRV I ++K A +QGRL+ F
Sbjct: 291 NPDVIQGKD-VELKWTPPKEEELIEFLCTEKMFSEDRVKSGIARLKKALKSGTQGRLDGF 349
Query: 294 FKPVANT 300
FK V T
Sbjct: 350 FKAVPKT 356
>gi|255945091|ref|XP_002563313.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|317374920|sp|B6HEM2.1|FEN1_PENCW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|211588048|emb|CAP86119.1| Pc20g07900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 395
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 218/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+AT+
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVARKAEATEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +CK+LL+LMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECKKLLELMGIPFINAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + + LE L++ QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFESPILLRHLTFSEQRKEPIQEIHLDRALEGLDMDRAQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TAL LI++H S+E +LE N ++++ +PEDWPY++AR LF P+V
Sbjct: 233 DYLEPIPKVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVVPEDWPYEDARELFTNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW AP+ EGLI FLV + GFN DRV ++ + Q RLE FFKPV
Sbjct: 293 PADHPECDFKWEAPNVEGLIEFLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 ARTEDEKASLKRK 365
>gi|150866777|ref|XP_001386488.2| hypothetical protein PICST_33791 [Scheffersomyces stipitis CBS
6054]
gi|317376214|sp|A3M056.2|FEN1_PICST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|149388033|gb|ABN68459.2| Exodeoxyribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 381
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/300 (50%), Positives = 210/300 (70%), Gaps = 4/300 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RTIR++E +KP+YVFDG+PP LK EL KR KR +A +
Sbjct: 54 LTNESGETTSHLSGMFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQID 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G ++ KF KR V+V+++ ND+ K+LL+LMG+P V AP EAEAQCA L ++G+V
Sbjct: 114 SIKDTGTVAEVMKFEKRLVRVSREQNDEAKKLLELMGIPYVNAPCEAEAQCAELARTGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + ++ + L +T QFID+CIL GC
Sbjct: 174 FAAASEDMDTLCYEPPYLLRHLTFAEARKMPINQITYSEAIAGLEMTKPQFIDMCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINR---ERYQIPEDWPYQEARRLFKEPEVV 238
DYC++I+G+G TA KLI++HGS+E I+E+IN +Y++PE+WPY EAR+LF +PE V
Sbjct: 234 DYCETIKGVGPVTAYKLIKEHGSLEKIIEHINSNPTSKYKVPENWPYDEARQLFMDPE-V 292
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
T E++ +KW PD EGLI ++V E GF+ DR+ EK+K QGRL+ FF VA
Sbjct: 293 TKGEEVTLKWKEPDVEGLIQYMVREKGFSEDRIRSGAEKLKKGLKTGVQGRLDGFFSVVA 352
>gi|312082398|ref|XP_003143428.1| flap endonuclease-1 [Loa loa]
gi|307761410|gb|EFO20644.1| flap endonuclease-1 [Loa loa]
Length = 345
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 145/293 (49%), Positives = 216/293 (73%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +RA+A +
Sbjct: 53 LQTESGETTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKTSELEKRIERRAEAEKQRS 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G++ + KF++R VKVTK+ N++ KRL+ LMG+PV++AP EAEAQCAAL ++G+V
Sbjct: 113 DAVELGDEASVNKFARRLVKVTKEQNEEAKRLVTLMGIPVLDAPCEAEAQCAALARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMD+LTFG+P LR ++ ++K+PV E + ++L++ + M+QFIDLCIL GC
Sbjct: 173 FATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMEQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +IRGIG + A +LI++H IE +L+ I++ +Y IP++W Y+EARRLF EP+V+ D
Sbjct: 233 DYVSTIRGIGPKKAFELIKKHECIENVLKIIDQTKYAIPKNWQYKEARRLFLEPDVM-DC 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +++ W PD EG++ FL E FN DRV ++ +++ + + Q R++SFF
Sbjct: 292 ENVELVWKEPDVEGIVQFLCGEKSFNEDRVRGSLTRMQKGRQAAQQIRIDSFF 344
>gi|71652611|ref|XP_814958.1| flap endonuclease-1 (FEN-1) [Trypanosoma cruzi strain CL Brener]
gi|122023721|sp|Q4DKQ5.1|FEN1_TRYCC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|70879977|gb|EAN93107.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma cruzi]
Length = 393
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/302 (51%), Positives = 216/302 (71%), Gaps = 1/302 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A
Sbjct: 57 LTNEAGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFD 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K +
Sbjct: 117 TAKEEGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKKKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVA+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GC
Sbjct: 177 WAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F +PE VT
Sbjct: 237 DYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLKPE-VTPA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E+++I++ PDEEGL+ FLV E FN DRV K I++++ A + +QGRL+ FF +
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFFTITRPVT 355
Query: 302 AP 303
P
Sbjct: 356 KP 357
>gi|407414008|gb|EKF35678.1| hypothetical protein MOQ_002324 [Trypanosoma cruzi marinkellei]
Length = 393
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/302 (51%), Positives = 216/302 (71%), Gaps = 1/302 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A
Sbjct: 57 LTNEAGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFD 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K +
Sbjct: 117 TAKEEGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVA+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GC
Sbjct: 177 WAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F PE VT
Sbjct: 237 DYVPKIPGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLTPE-VTPA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E+++I++ PDEEGL+ FLV E FN DRV K I++++ A ++ +QGRL+ FF +
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALSRKTQGRLDQFFTITRPVT 355
Query: 302 AP 303
P
Sbjct: 356 KP 357
>gi|366994432|ref|XP_003676980.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
gi|342302848|emb|CCC70625.1| hypothetical protein NCAS_0F01410 [Naumovozyma castellii CBS 4309]
Length = 379
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/303 (51%), Positives = 215/303 (70%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPTLKSHELSKRTSRREETEKKLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV+ K E+ R VKV+K+HND+ K+LL+LMG+P V AP EAE+QCA L K G+V
Sbjct: 114 EAVDQAEKMKQER---RLVKVSKEHNDEAKKLLELMGIPYVNAPGEAESQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E ++L+ L+LT++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQGLDLTLEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI----NRERYQIPEDWPYQEARRLFKEPEV 237
DYCD+IRG+G TALKLI++HGS+E I+E I +++++PE+WPY+EAR LF +P+V
Sbjct: 231 DYCDNIRGVGPVTALKLIKEHGSLEKIVEFIESDEGNKKWKVPENWPYKEARELFLKPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ D +++ +KW P E+ LI++L E FN +RV I++++ QGRL+ FFK V
Sbjct: 291 I-DGDEITLKWQPPKEQELIDYLCGEKLFNEERVKSGIKRLQKGLKSGVQGRLDGFFKVV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|241958594|ref|XP_002422016.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
gi|317374881|sp|B9WLQ5.1|FEN1_CANDC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|223645361|emb|CAX40017.1| structure-specific endonuclease, putative [Candida dubliniensis
CD36]
Length = 372
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 154/300 (51%), Positives = 209/300 (69%), Gaps = 3/300 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNEDGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+V
Sbjct: 114 ALGDEGTVEEVLKFEKRLVRVTREQNEEAKKLLELMGIPCVDAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GC
Sbjct: 174 YAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVT 239
DYC+SI+GIG TA KLI++HGS++ I+E I N+ +Y +PE+WPY EAR+LF PE VT
Sbjct: 234 DYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPE-VT 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
+ ++ +KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V N
Sbjct: 293 NANEISLKWKEPDVDGLIEFMVRQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVVKN 352
>gi|425778472|gb|EKV16597.1| Flap endonuclease 1 [Penicillium digitatum PHI26]
gi|425784232|gb|EKV22023.1| Flap endonuclease 1 [Penicillium digitatum Pd1]
Length = 395
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/313 (51%), Positives = 216/313 (69%), Gaps = 7/313 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR +++A+A +
Sbjct: 53 LMSESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRVARKAEAAEAHE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +CK+LL LMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECKKLLGLMGIPFINAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + + LE L++ QFIDLCIL GC
Sbjct: 173 YAAASEDMDTLCFESPILLRHLTFSEQRKEPIQEIHLDRALEGLDMDRPQFIDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE---NINRERYQIPEDWPYQEARRLFKEPEV- 237
DY + I +G TAL LI++H S+E +LE N ++++ +PEDWPY++AR LF P+V
Sbjct: 233 DYLEPIPKVGATTALSLIKEHKSLEKVLEFMKNDPKKKFVVPEDWPYEDARELFSNPDVR 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW AP+ EGLI +LV + GFN DRV ++ + Q RLE FFKPV
Sbjct: 293 PADHAECDFKWEAPNVEGLIEYLVGDKGFNEDRVRNGAARLSKHLKTAQQSRLEGFFKPV 352
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 353 ARTEDEKASLKRK 365
>gi|325186427|emb|CCA20932.1| flap endonuclease 1 putative [Albugo laibachii Nc14]
Length = 389
Score = 324 bits (830), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 215/314 (68%), Gaps = 9/314 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHLQGMF+RTIRL+E G+KP+YVFDG+PP +K +EL KR +R A L
Sbjct: 58 LTNQDGEDTSHLQGMFSRTIRLMENGIKPVYVFDGKPPVMKSKELEKRKDRRTAANKSLE 117
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA EAGN +I++FSKR V T QH+ DCK LL+LMGVPV+ AP EAEA CA L K +V
Sbjct: 118 EATEAGNLVEIDRFSKRLVHATSQHSQDCKELLRLMGVPVLTAPCEAEATCATLAKHHKV 177
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA +EDMD LTFG P R + +++K+P++E ++ + L+ L+LT QF+DLCIL GC
Sbjct: 178 YASGTEDMDVLTFGTPVLYRRMTVAANKKVPILEIKLEQALKALDLTEQQFVDLCILCGC 237
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDW-----PYQEARRLFK 233
DYCDSIRGIG + A I++H +IE L+++ N + IPE+W Y+ AR +F
Sbjct: 238 DYCDSIRGIGPKKAFNGIKEHKTIENFLQHLQQSNNKGVVIPEEWLGDDPIYKRAREMFV 297
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
EVV D ++ +KW P + L FLV ++GF +DRVT AI K+K +++ SQ RL+SF
Sbjct: 298 NAEVV-DVNEVDLKWKEPLADELSRFLVDKHGFRADRVTTAIVKLKKSRSSQSQKRLDSF 356
Query: 294 FKPVANTSAPIKRK 307
FK V + P K++
Sbjct: 357 FKAVPGATTPTKKR 370
>gi|407851500|gb|EKG05394.1| hypothetical protein TCSYLVIO_003532 [Trypanosoma cruzi]
Length = 393
Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 156/302 (51%), Positives = 215/302 (71%), Gaps = 1/302 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL +R + +A
Sbjct: 57 LTNEAGEVTSHLNGLFARTLRMVDEGLRPIYVFDGKPPTLKASELQERRQRAEEAQQLFD 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN E +EK SKRTV+V+++ ++ K+LL+LMG+PVV+APSEAEAQCA L K +
Sbjct: 117 TAKEEGNDELMEKMSKRTVRVSREQLEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVA+EDMD+LTFGAP LRHL ++K P+ EF + +IL LTM QFIDLCIL GC
Sbjct: 177 WAVATEDMDALTFGAPVMLRHLTYSEAKKRPIAEFHLDEILGITGLTMTQFIDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG Q A + I++HG IET+L++++ R+ +PE + Y+EAR+ F +PE VT
Sbjct: 237 DYVPKISGIGPQKAWEGIKKHGDIETLLQSLDAGRHSVPEGFHYEEARQFFLKPE-VTPA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E+++I++ PDEEGL+ FLV E FN DRV K I++++ A + +QGRL+ F +
Sbjct: 296 EEIEIQFREPDEEGLVKFLVEEKLFNKDRVLKGIQRLRNALTRKTQGRLDQFLTITRPVT 355
Query: 302 AP 303
P
Sbjct: 356 KP 357
>gi|349579452|dbj|GAA24614.1| K7_Rad27p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 382
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 157/306 (51%), Positives = 213/306 (69%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ LI +L + F+ +RV I ++K S QGRL+ FF
Sbjct: 289 PEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSSIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|330689555|pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
gi|330689556|pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 220/296 (74%), Gaps = 6/296 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR++E G+KP+YVFDG+PP LK ELAKR +RA+A L
Sbjct: 51 VLQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQL 110
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A AG ++++EKF+KR VKVTKQHND+CK LL LMG+P ++APSEAEA CAAL K+G+
Sbjct: 111 QQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGK 170
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDM LTFG+P +RHL ++K+P+ EF +++IL+EL L +QF+DLCIL G
Sbjct: 171 VYAAATEDMACLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG 230
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DYC+SIRGIG + A+ LI++H SIE I+ ++ +Y +PE+W ++EA +LF EPEV+ D
Sbjct: 231 SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVL-D 289
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-LESFFK 295
E +++KWS P+EE LI F+ E F+ +R+ ++++ +KS QG LE F+
Sbjct: 290 PESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRL----SKSRQGSTLEVLFQ 341
>gi|68477053|ref|XP_717504.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
gi|68477234|ref|XP_717410.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|74586103|sp|Q5A6K8.1|FEN1_CANAL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46439119|gb|EAK98441.1| hypothetical protein CaO19.547 [Candida albicans SC5314]
gi|46439217|gb|EAK98538.1| hypothetical protein CaO19.8182 [Candida albicans SC5314]
Length = 372
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/298 (51%), Positives = 208/298 (69%), Gaps = 3/298 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNEDGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+V
Sbjct: 114 ALGDEGTVEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GC
Sbjct: 174 YAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVT 239
DYC+SI+GIG TA KLI++HGS++ I+E I N+ +Y +PE+WPY EAR+LF PE VT
Sbjct: 234 DYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPYDEARQLFMNPE-VT 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ ++ +KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V
Sbjct: 293 NASEINLKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVV 350
>gi|336365482|gb|EGN93832.1| hypothetical protein SERLA73DRAFT_188945 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378041|gb|EGO19200.1| hypothetical protein SERLADRAFT_479560 [Serpula lacrymans var.
lacrymans S7.9]
Length = 407
Score = 323 bits (827), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 158/317 (49%), Positives = 223/317 (70%), Gaps = 19/317 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP+YVFDG+PP++K L+KR+ KR +A ++
Sbjct: 53 MLTNDAGETTSHLMGFFYRTIRIVENGIKPVYVFDGKPPEMKAGVLSKRFEKREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED++KFS+RTVKVT++HN++C+RLLKLMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKEIGTAEDMDKFSRRTVKVTREHNEECRRLLKLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP LRHL +RK P+ E + + LE L + M F DLCIL G
Sbjct: 173 VYAAGSEDMDTLTFSAPILLRHLTFSEARKAPISEINLQRALEGLEMDMSLFTDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE----------------RYQIPEDWP 224
CDY + I+G+G ++ALKL+R HG + ++E++ + IPE+WP
Sbjct: 233 CDYLEPIKGVGPKSALKLVRDHGGLAGVVEHLRGKAAEKAEAGEDGKKKKGGIHIPEEWP 292
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
++EA+++F +P+ VT ++++++W PD +GL+ FLV+E GFN +RV K +K++ N
Sbjct: 293 WEEAKKIFVKPD-VTPADEVELEWKNPDIDGLVQFLVTEKGFNEERVRKGADKLQKFLNS 351
Query: 285 SSQGRLESFF--KPVAN 299
QGRL+ FF KP A+
Sbjct: 352 KQQGRLDGFFTAKPKAS 368
>gi|409042314|gb|EKM51798.1| hypothetical protein PHACADRAFT_102664 [Phanerochaete carnosa
HHB-10118-sp]
Length = 384
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/297 (52%), Positives = 219/297 (73%), Gaps = 5/297 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE TSHL G F RTIR+++ G+KP+YVFDG+PP+LK L+KR+ +R +A +D
Sbjct: 53 LLTNDAGETTSHLMGFFYRTIRMVDNGIKPLYVFDGKPPELKSGVLSKRFERREEAKEDE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+R VKVT++ N++C+RLL LMGVP V APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTTEDVDRFSRRQVKVTREQNEECRRLLTLMGVPWVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF + LRHL +RK P+ E + K+LE L ++M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNSAILLRHLTFSEARKAPISEINLEKVLEGLEMSMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER---YQIPEDWPYQEARRLFKEPEV 237
CDY + I+G+G ++ALKLIR++G + ++E++ RE+ +P++WP++EA++LF++P+
Sbjct: 233 CDYLEPIKGVGPKSALKLIREYGGLAEVVEHL-REKCGGISVPDEWPWEEAKKLFEKPD- 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
VT +++I+W PD EGL++FLV E GFN DRV K EK+ QGRL+ FF
Sbjct: 291 VTPASEVEIEWKGPDVEGLVDFLVKEKGFNEDRVRKGAEKLTKGVAAKQQGRLDGFF 347
>gi|393213357|gb|EJC98853.1| PIN domain-like protein [Fomitiporia mediterranea MF3/22]
Length = 403
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/310 (50%), Positives = 218/310 (70%), Gaps = 17/310 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE+GE TSHL G F RTIR++E G+KP YVFDG+PPDLK LAKR+ +R +A ++
Sbjct: 53 LLTNESGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKSGVLAKRFERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+E+F++R VKVTK+HN++C++LL LMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTAEDMERFTRRQVKVTKEHNEECRKLLGLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + K LE L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLQKALEGLEMNMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN----------------RERYQIPEDWP 224
CDY + I+GIG ++ALKL+R +G + ++E++ + Q+P++WP
Sbjct: 233 CDYLEPIKGIGPKSALKLVRDYGDLGAVIEHLREKTAAKEEAAEEGKKKKGGIQVPDEWP 292
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
++EA+++F++P+V+ E++ ++W APD +GL+ FLV+E GFN +RV K EK+ N
Sbjct: 293 WEEAKKVFEQPDVIP-AEKVDLEWKAPDVDGLVQFLVTEKGFNEERVRKGAEKLAKYLNA 351
Query: 285 SSQGRLESFF 294
QGRL+ FF
Sbjct: 352 KQQGRLDGFF 361
>gi|294658624|ref|XP_460967.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
gi|317374925|sp|Q6BLF4.2|FEN1_DEBHA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|202953266|emb|CAG89325.2| DEHA2F13882p [Debaryomyces hansenii CBS767]
Length = 379
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 212/312 (67%), Gaps = 7/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHL GMF RTIRL+E +KP+YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNDEGETTSHLSGMFYRTIRLVENSIKPVYVFDGKPPVLKGGELEKRLLRREEAIKQRE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G ED+ ++ KRTV+VT++ ND+ K+LL+LMGVP V AP EAEAQCA L + G+V
Sbjct: 114 NIKDEGTIEDMVRYEKRTVRVTREQNDEAKKLLELMGVPYVNAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD++ + P LRHL +RK+P+ + + K+LE L + + FIDLCIL GC
Sbjct: 174 FAAASEDMDTICYQPPFLLRHLTFSEARKMPIDQIQYEKVLEALEMDRETFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++IRG+G TA KLI++HGS++ I+E N ++ +++PEDWPY EAR+LF P+
Sbjct: 234 DYCETIRGVGPVTAFKLIKEHGSLDKIVEYLTNNPDKTNFKVPEDWPYDEARKLFINPDT 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK-- 295
+ D ++ +KW PD EGLI ++V E GF+ DR+ EK+K QGRL+ FF+
Sbjct: 294 I-DASEVNLKWKEPDVEGLIQYMVKEKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFQSV 352
Query: 296 PVANTSAPIKRK 307
P SA KRK
Sbjct: 353 PKPKDSADKKRK 364
>gi|317376169|sp|B3LQY3.1|FEN1_YEAS1 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|190409721|gb|EDV12986.1| structure-specific endonuclease RAD27 [Saccharomyces cerevisiae
RM11-1a]
Length = 382
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 212/306 (69%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSETKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|357624246|gb|EHJ75100.1| flap endonuclease-1 [Danaus plexippus]
Length = 424
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/351 (47%), Positives = 226/351 (64%), Gaps = 47/351 (13%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L
Sbjct: 54 LTSVDGETTSHLMGTFYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQ 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAAL------ 115
+A EAG+ I+KF++R VKVT+QH + ++LLKLMG+PVVEAP EAEAQCA L
Sbjct: 114 KATEAGDTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELTSEGNL 173
Query: 116 ---------------------------------------CKSGQVYAVASEDMDSLTFGA 136
K G+VYAVA+EDMD+LTFGA
Sbjct: 174 VDGLTNPLLRRGPIPAAARARLPVTHTEVISGPPVGGVPVKGGKVYAVATEDMDALTFGA 233
Query: 137 PRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL 196
LRHL +RK+PV EF + ++L L L +FIDLCIL GCDYC SI+GIG + A+
Sbjct: 234 NVLLRHLTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGSIKGIGPKRAI 293
Query: 197 KLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 256
+LI+QH SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+ + +++KWS PDEEGL
Sbjct: 294 ELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEAKDVELKWSDPDEEGL 352
Query: 257 INFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
+ FL + FN +RV +K+ A+ ++QGRL+ FFK ++ T P KRK
Sbjct: 353 VKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNP-KRK 402
>gi|6322736|ref|NP_012809.1| Rad27p [Saccharomyces cerevisiae S288c]
gi|140964|sp|P26793.1|FEN1_YEAST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1; AltName: Full=RAD2
homolog nuclease 1; Short=RTH1 nuclease; AltName:
Full=Structure-specific endonuclease RAD27
gi|317376170|sp|C7GVJ8.1|FEN1_YEAS2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376171|sp|A6ZZK4.1|FEN1_YEAS7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376172|sp|C8ZC62.1|FEN1_YEAS8 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|248392|gb|AAB21998.1| RAD2 homolog [Saccharomyces cerevisiae]
gi|486190|emb|CAA81953.1| RAD27 [Saccharomyces cerevisiae]
gi|151941690|gb|EDN60052.1| 5'-3'-exonuclease [Saccharomyces cerevisiae YJM789]
gi|256269907|gb|EEU05165.1| Rad27p [Saccharomyces cerevisiae JAY291]
gi|259147728|emb|CAY80978.1| Rad27p [Saccharomyces cerevisiae EC1118]
gi|285813148|tpg|DAA09045.1| TPA: Rad27p [Saccharomyces cerevisiae S288c]
gi|323347750|gb|EGA82014.1| Rad27p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764563|gb|EHN06085.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298324|gb|EIW09422.1| Rad27p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 382
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 212/306 (69%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|390332710|ref|XP_001197560.2| PREDICTED: LOW QUALITY PROTEIN: flap endonuclease 1-like
[Strongylocentrotus purpuratus]
Length = 384
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/313 (50%), Positives = 213/313 (68%), Gaps = 8/313 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTNE GE TSHL G+F RTIR++E G+KP YVFDG+PP++K EL KR RA+A +L
Sbjct: 52 VLTNEEGETTSHLMGIFYRTIRMIEHGLKPCYVFDGKPPEMKSGELTKRKEMRAEAEKEL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A E G++E++ KF KR VKVTKQHN++C+ LLKLMGVP V+AP EAEAQC L K G+
Sbjct: 112 EKAKEQGDQENMNKFEKRLVKVTKQHNEECQHLLKLMGVPYVKAPGEAEAQCCELVKKGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
+Y V +EDMD+LTFG LRHL +RK+P+ EF ++LE L L QFIDLCIL G
Sbjct: 172 LYGVGTEDMDALTFGGNVLLRHLTVSEARKMPIQEFNYQRVLEGLGLNRQQFIDLCILMG 231
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +I+GIG + A +L++ HGSIETILE I++ +Y PEDW Y+EAR LF P+V
Sbjct: 232 CDYCGTIKGIGMKRAFELMKTHGSIETILEKIDQNKYPPPEDWLYKEARELFLSPDVTPG 291
Query: 241 EE------QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
EE L I + + ++ F++ ++ DR+ +K+ A+ ++QGRL+SFF
Sbjct: 292 EEFDVRFXFLCIIXNHXNXNSMVXFVIYM--YSEDRMRNGCKKLVKARTGATQGRLDSFF 349
Query: 295 KPVANTSAPIKRK 307
+ S KRK
Sbjct: 350 TLKPSASPAGKRK 362
>gi|323332740|gb|EGA74145.1| Rad27p [Saccharomyces cerevisiae AWRI796]
Length = 370
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/304 (51%), Positives = 210/304 (69%), Gaps = 9/304 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LA
Sbjct: 42 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLA 101
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA K E+ R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+V
Sbjct: 102 EATTELEKMKQER---RLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKV 158
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GC
Sbjct: 159 YAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGC 218
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPE 236
DYC+SIRG+G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PE
Sbjct: 219 DYCESIRGVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPE 278
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
V+ D ++ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF+
Sbjct: 279 VI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQV 337
Query: 297 VANT 300
V T
Sbjct: 338 VPKT 341
>gi|320582300|gb|EFW96517.1| 5' to 3' exonuclease, 5' flap endonuclease [Ogataea parapolymorpha
DL-1]
Length = 374
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/297 (51%), Positives = 205/297 (69%), Gaps = 4/297 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAG TSHL G F RTIR++ G+KP YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNEAGGTTSHLMGFFYRTIRMVGNGIKPCYVFDGKPPVLKGGELEKRLKRREEAEQKAL 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E E G E++++F KR VKVT++ N+ + LL+LMG+P V AP EAEAQCA L + G+V
Sbjct: 114 ELKETGTVEELQRFEKRQVKVTREQNEQAQHLLRLMGIPYVIAPCEAEAQCAELARKGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P FLR++ S+K+ V EF + +LE + ++ F+DLCIL GC
Sbjct: 174 YAAASEDMDTLCYQPPFFLRNVTAAESKKLKVDEFTTSAVLEGFGMDINTFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DYC++I+GIG TA KLI++HGSIE I+E I + +Y++PE+WPY EAR LF PEV+
Sbjct: 234 DYCETIKGIGPVTAFKLIKEHGSIEKIIEFIENDPKCKYKVPENWPYNEARELFLNPEVL 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
++ + +KW+ PD +GLI F+V ENGFN R+ +EK+K QGRL+ FFK
Sbjct: 294 NGDD-IDLKWTDPDLDGLIEFMVKENGFNEQRIRDGVEKLKKGLKGGVQGRLDGFFK 349
>gi|317374880|sp|C4YLS2.1|FEN1_CANAW RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238879915|gb|EEQ43553.1| structure-specific endonuclease RAD27 [Candida albicans WO-1]
Length = 372
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/298 (51%), Positives = 208/298 (69%), Gaps = 3/298 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RTI+++E +KP+YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNEDGETTSHLSGMFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKT 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G E++ KF KR V+VT++ N++ K+LL+LMG+P V+AP EAEAQCA L + G+V
Sbjct: 114 ALGDEGTVEEVLKFEKRLVRVTREQNEEAKKLLQLMGIPCVDAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL +RK+P+ + E + L++T +QFIDLCIL GC
Sbjct: 174 YAAASEDMDTLCYEPPFLLRHLTFSEARKMPIDQIEYKDAIAGLDMTKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDWPYQEARRLFKEPEVVT 239
DYC+SI+GIG TA KLI++HGS++ I+E I N+ +Y +PE+WP+ EAR+LF PE VT
Sbjct: 234 DYCESIKGIGQATAFKLIKEHGSLDNIVEWIKNNKTKYTLPENWPFDEARQLFMNPE-VT 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ ++ +KW PD +GLI F+V + GF+ DR+ EK+K QGRL+ FFK V
Sbjct: 293 NASEISLKWKEPDVDGLIEFMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFKVV 350
>gi|344303968|gb|EGW34217.1| hypothetical protein SPAPADRAFT_148774 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 213/310 (68%), Gaps = 5/310 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL G+F RTIRL+E +KP+YVFDG+PP LK EL KR +R +A +
Sbjct: 54 LTNEDGETTSHLSGLFYRTIRLVENNIKPVYVFDGKPPVLKGGELEKRLQRREEAQKQMD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G ++ KF KR V+V++Q ND+ ++LL+LMG+P+V AP EAEAQCA L + G+V
Sbjct: 114 SIKDEGTVAEVMKFEKRLVRVSRQQNDEARKLLELMGIPIVNAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + ++ + L++T +QFIDLCIL GC
Sbjct: 174 FAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAIAGLDMTKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+E IN + ++++PE+WPY EAR+LF +PE
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSLDKIVEYINSNPEKTKFKVPENWPYDEARQLFLKPE- 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
VT+ ++ +KW PD EGLI ++V E GF+ +R+ EK+K QGRL+ FF V
Sbjct: 293 VTEASEVTLKWKEPDVEGLIQYMVKEKGFSEERIRSGAEKLKKGLKAGVQGRLDGFFSVV 352
Query: 298 ANTSAPIKRK 307
P +K
Sbjct: 353 KPAGTPDSKK 362
>gi|401424227|ref|XP_003876599.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492842|emb|CBZ28120.1| putative flap endonuclease-1 (FEN-1) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 395
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 214/293 (73%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A +
Sbjct: 57 LTNEKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEARRQKAAEAEKEFE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +AG+ E +EK SKRTV+V+++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+
Sbjct: 117 KAKDAGDDEMMEKMSKRTVRVSREQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTFG+ LRHL ++K PV E + ++L+ L+MDQF+DLCIL GC
Sbjct: 177 WAVGTEDMDALTFGSTIMLRHLNISDAKKRPVAEIHLDEVLQTTGLSMDQFVDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY + GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT
Sbjct: 237 DYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTRA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E++ I++S PDE GLI FLV E FN DRV K I +++ A + +QGRL+SFF
Sbjct: 296 EEIDIQFSEPDEAGLIQFLVKEKLFNPDRVDKGIARLRTALTRKTQGRLDSFF 348
>gi|254567327|ref|XP_002490774.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|317376166|sp|C4QZ20.1|FEN1_PICPG RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238030570|emb|CAY68494.1| 5' to 3' exonuclease, 5' flap endonuclease [Komagataella pastoris
GS115]
gi|328351158|emb|CCA37558.1| flap endonuclease-1 [Komagataella pastoris CBS 7435]
Length = 373
Score = 320 bits (821), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 149/296 (50%), Positives = 204/296 (68%), Gaps = 4/296 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSHL G F RTIR++ G+KP YVFDG+PP LK EL KR +R +A
Sbjct: 54 LANEEGETTSHLMGFFYRTIRMVGYGIKPCYVFDGKPPVLKGGELEKRLKRREEAEKQRL 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ E G DI KF +RTV+VT++ ND K+LL+LMG+P V+AP EAEAQCA L K G+V
Sbjct: 114 DMKETGTLADIAKFERRTVRVTREQNDQAKKLLELMGIPYVDAPCEAEAQCAELAKGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRH+ +RK+PV E + AK++E L + + QFIDLCIL GC
Sbjct: 174 YAAASEDMDTLCYETPYLLRHMTTAEARKLPVTEIDYAKVMEGLEMELPQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DYC++I+G+G TA KLI++HGSIE ++E I + + +IPE+WPY EAR LF PEV+
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSIEKVVEAIENNPKSKQKIPENWPYNEARELFLHPEVI 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +++W PDEE L++++V ++GF+ R+ K++ + +QGRL+ FF
Sbjct: 294 PASE-CELEWKEPDEEALVDYMVRQHGFSEQRIRDGASKLRKSLKTGTQGRLDKFF 348
>gi|389593155|ref|XP_003721831.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
gi|122048622|sp|Q4FYU7.1|FEN1_LEIMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|321438333|emb|CBZ12085.1| putative flap endonuclease-1 (FEN-1) [Leishmania major strain
Friedlin]
Length = 395
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 214/293 (73%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A
Sbjct: 57 LTNEKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAERAFE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +AG+ E +EK SKRTV+V++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+
Sbjct: 117 KAKDAGDDEMMEKMSKRTVRVSRDQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTFG+ LRHL ++K P++E + ++L+ L+MDQF+DLCIL GC
Sbjct: 177 WAVGTEDMDALTFGSTVMLRHLNISDAKKRPIVEIHLDEVLQTTGLSMDQFVDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY + GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT
Sbjct: 237 DYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTRA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E++ I++S PDE GLI FLV E FN DRV K I +++AA + +QGRL+SFF
Sbjct: 296 EEIDIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAAFTRKTQGRLDSFF 348
>gi|401624921|gb|EJS42958.1| rad27p [Saccharomyces arboricola H-6]
Length = 382
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/306 (50%), Positives = 213/306 (69%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPD+K EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDMKSHELTKRSSRREETERKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKL++ HGSIE I+E I + +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLMKTHGSIEKIIEYIESGESSNAKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P+E+ LI +L E F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEVNLKWSPPNEKELIQYLCDEKKFSEERVQSGITRLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|71023659|ref|XP_762059.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
gi|74699231|sp|Q4P1V1.1|FEN1_USTMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46101624|gb|EAK86857.1| hypothetical protein UM05912.1 [Ustilago maydis 521]
Length = 374
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 219/309 (70%), Gaps = 5/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A +
Sbjct: 54 LMTESGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + + E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+V
Sbjct: 114 EQKDVADAEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA SEDMD+LTFG P L+HL +K+PV + ++AK LE L +TM QFIDLCIL GC
Sbjct: 174 YAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLAKALEGLQMTMAQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG +TALKLIR+H ++E ++ ++ ++ QIP+ WP+QEAR++F+ P+V
Sbjct: 234 DYLDPIKGIGPKTALKLIREHKTLENVVHHLKEDGKKSVQIPDHWPFQEARKIFESPDVQ 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
+ L +KW APD E ++ FL + GF+ DRV K EK++ + ++ QGRL+ FF V
Sbjct: 294 KGVD-LDLKWEAPDVEAMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFT-VK 351
Query: 299 NTSAPIKRK 307
SAP KRK
Sbjct: 352 PGSAPPKRK 360
>gi|443894995|dbj|GAC72341.1| hypothetical protein PANT_7d00055 [Pseudozyma antarctica T-34]
Length = 373
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/305 (49%), Positives = 216/305 (70%), Gaps = 4/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A +
Sbjct: 54 LMTESGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLKKRFGRREEAREQEE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + + E +++ ++R V+ T+QHN++ ++LLKLMG+P V APSEAEAQCA L ++G+V
Sbjct: 114 EQKDVADVEKMDQLARRQVRPTRQHNEEVRQLLKLMGIPCVIAPSEAEAQCAELARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA SEDMD+LTFG P L+HL +K+PV + ++ K LE L + M QFIDLCIL GC
Sbjct: 174 YAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMDMPQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG +TALKLIR+H S+E ++E++ E QIPE WP+QEAR++F+ P+V
Sbjct: 234 DYLDPIKGIGPKTALKLIREHKSLENVVEHLKEEAKKSVQIPEHWPFQEARKIFEAPDVQ 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
++ L +KW APD EG++ FL + GF+ DRV K EK++ + ++ QGRL+ FF +
Sbjct: 294 KGKD-LDLKWEAPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLSQKQQGRLDGFFTVKS 352
Query: 299 NTSAP 303
AP
Sbjct: 353 GAPAP 357
>gi|401841744|gb|EJT44085.1| RAD27-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 380
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 213/306 (69%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PP++K EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMGVP + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGVPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKL+R HGSIE I+E I E +++IP+DWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPDDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ LI +L +E F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEIDLKWSPPKEKELIEYLCNEKKFSEERVKSGIARLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|156042752|ref|XP_001587933.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980]
gi|154695560|gb|EDN95298.1| hypothetical protein SS1G_11175 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 205/314 (65%), Gaps = 27/314 (8%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A AT+ L
Sbjct: 64 MLTNEEGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGL 123
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDIEKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+
Sbjct: 124 EEAKETGTAEDIEKFSRRTVRVTREHNAECQKLLKLMGIPFIIAPTEAEAQCAVLARAGK 183
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
E RK P+ E + K+L LN+ QF+DLCIL G
Sbjct: 184 SLCGGDE--------------------QRKEPIQEVILEKVLAGLNMDRKQFVDLCILLG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI---NRERYQIPEDWPYQEARRLFKEPEV 237
CDY D I +G TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF P+V
Sbjct: 224 CDYLDPIPKVGPHTALKLIREHGDLETLVAWIKADKKERYTIPEDWPYQDARELFFNPDV 283
Query: 238 -VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
D E KW APD EGL+ FLV+E GF+ DRV A +K+ S Q RLE FFKP
Sbjct: 284 RPADHEDCDFKWEAPDIEGLVKFLVAEKGFSEDRVRSAAQKLTKNLKSSQQARLEGFFKP 343
Query: 297 VANTS---APIKRK 307
+ T A +KRK
Sbjct: 344 IPKTDEERASLKRK 357
>gi|323354056|gb|EGA85902.1| Rad27p [Saccharomyces cerevisiae VL3]
Length = 382
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 211/306 (68%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PPDLK EL KR S+R + LA
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKE 234
GCDYC+SIR +G TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRXVGPVTALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ LI +L + F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEINLKWSPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|343427426|emb|CBQ70953.1| probable DNA repair endonuclease rad2 [Sporisorium reilianum SRZ2]
Length = 374
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/309 (49%), Positives = 219/309 (70%), Gaps = 5/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A +
Sbjct: 54 LMTESGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQEE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + + E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+V
Sbjct: 114 EQKDVADVEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA SEDMD+LTFG P L+HL +K+PV + ++ K LE L ++M QFIDLCIL GC
Sbjct: 174 YAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLQMSMPQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG +TALKLIR+H ++E ++E++ E QIPE WP+QEAR++F+ P+V
Sbjct: 234 DYLDPIKGIGPKTALKLIREHKTLENVVEHLKEEGKKSVQIPEHWPFQEARKIFENPDVQ 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
++ L +KW APD E ++ FL + GF+ DRV K +K++ + ++ QGRL+ FF V
Sbjct: 294 KGKD-LDLKWEAPDVEAMVKFLCQDKGFSEDRVRKGCDKLQKSLSQKQQGRLDGFFT-VK 351
Query: 299 NTSAPIKRK 307
SAP KRK
Sbjct: 352 PGSAPPKRK 360
>gi|448098848|ref|XP_004199006.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359380428|emb|CCE82669.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 210/303 (69%), Gaps = 5/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RTIR+++ +KP+YVFDG+PP LK EL KR ++ DA +
Sbjct: 18 LTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKRLLRKEDAIKQME 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ ED+ ++ KRTV+VT++ N + K+LL+LMG+P V+AP EAEAQCAAL + G+V
Sbjct: 78 NIKDEATVEDMVRYEKRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAALARKGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD++ + P LRHL +RK+P+ + E +K+LE L + D FIDLCIL GC
Sbjct: 138 FAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+E N ++ +Y++PE+WPY EAR LF PE
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDKIVEYLSANPDKTKYKVPENWPYNEARELFLHPE- 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
V + + + +KW PD EGLI ++V + GF+ +R+ EK+K QGRL+ FF+ +
Sbjct: 257 VQNADDINLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQVI 316
Query: 298 ANT 300
+
Sbjct: 317 PKS 319
>gi|317374928|sp|C4YBJ8.2|FEN1_CLAL4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 376
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 218/310 (70%), Gaps = 7/310 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RTIRL+E+G+KP+YVFDG+PP LK EL KR KR DA +
Sbjct: 54 LTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ E G E++ K+ KRTV+ +++ ND+ K+LL+LMG+P + APSEAEAQCA L ++G+V
Sbjct: 114 DLKETGTVEELMKYEKRTVRASREQNDEAKKLLELMGIPYIVAPSEAEAQCAELARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + LRHL +RK+P+ + + +L+ L++ F+DLCIL GC
Sbjct: 174 FAAASEDMDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN + +Y++PE+WPY EA++LF PE
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPE- 292
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+T +++ +KW+ P+ +GL+ F+V + GF+ +R+ EK+K A QGRL+ FF V
Sbjct: 293 ITKGDEVDVKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTVV 352
Query: 298 ANTSAPIKRK 307
S+P KRK
Sbjct: 353 --KSSPAKRK 360
>gi|146090657|ref|XP_001466297.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|398017392|ref|XP_003861883.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
gi|317374906|sp|A4I2L4.1|FEN1_LEIIN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134070659|emb|CAM69008.1| putative flap endonuclease-1 (FEN-1) [Leishmania infantum JPCM5]
gi|322500111|emb|CBZ35186.1| flap endonuclease-1 (FEN-1), putative [Leishmania donovani]
Length = 395
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 158/323 (48%), Positives = 222/323 (68%), Gaps = 15/323 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A +
Sbjct: 57 LTNEKGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELEMRRQKAAEAEREFE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +AG+ E +EK SKRTV+V++ D+ K+LL+LMG+PV++APSEAEAQCA L K G+
Sbjct: 117 KAKDAGDDEMMEKMSKRTVRVSRDQIDESKKLLRLMGIPVIQAPSEAEAQCAELVKKGKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTFG+ LRHL ++K P+ E + ++L+ L+M QF+DLCIL GC
Sbjct: 177 WAVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQITGLSMGQFVDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY + GIG Q A + I+++GSIE+ LE+++ ++ +P D+ Y+EAR F+ PE VT
Sbjct: 237 DYVPKVPGIGPQKAWEGIQRYGSIESFLESLDTTKHPVPADFYYKEARAFFQNPE-VTPA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK------ 295
E++ I++S PDE GLI FLV E FN DRV K I +++AA + +QGRL+SFF
Sbjct: 296 EEINIQFSEPDEVGLIQFLVKEKLFNPDRVNKGIARLRAALTRKTQGRLDSFFTVTKVPQ 355
Query: 296 -------PVANTSAPIKRKVYLH 311
P+A T P K Y+H
Sbjct: 356 QTAAARAPLAGTKRPRDGK-YVH 377
>gi|407034393|gb|EKE37191.1| flap nuclease, putative [Entamoeba nuttalli P19]
Length = 376
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 223/312 (71%), Gaps = 8/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ +E GE TSH+ G F RTI+L+E+G+KP+YVFDG+PP++K EL KR A + L
Sbjct: 54 MVDEFGETTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E G+KE +K KRT ++TK+ +D+ K+LL+LMG+P +EA EAE CAAL K+G+
Sbjct: 114 KALEEGDKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGSCAALVKAGKC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LT G+ +R ++K P+ E+ ++ ILEE TM+QFIDLCIL GC
Sbjct: 174 YATATEDMDALTLGSEHVVRKFSASDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC++I+G+G TA +LI+Q+ SIE IL++++ ++Y++PE+W Y+EAR LF P+V D
Sbjct: 234 DYCETIKGVGPITAFELIQQYKSIENILQHLS-DKYKVPENWKYKEARELFLHPDVA-DF 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PV 297
+++W+ DEEG+ +LV+E FN +RVTK IEK+K K+K +QGRL+SFF P+
Sbjct: 292 SDYKLEWNKIDEEGIKKYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFNVKKVPL 351
Query: 298 ANTSAP--IKRK 307
+ + A IKRK
Sbjct: 352 SKSEAASGIKRK 363
>gi|365759754|gb|EHN01528.1| Rad27p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 154/306 (50%), Positives = 211/306 (68%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSHL GMF RT+R+++ G+KP YVFDG+PP++K EL KR S+R + LA
Sbjct: 54 LANEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPEMKSHELTKRSSRREETEKKLA 113
Query: 62 EAVEAGNKEDIEKFS--KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
EA ++EK +R VKV+K+HN++ ++LL LMGVP + AP+EAEAQCA L K G
Sbjct: 114 EATT-----ELEKMKQERRLVKVSKEHNEEAQKLLGLMGVPYIIAPTEAEAQCAELAKKG 168
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+VYA ASEDMD+L + P LRHL ++K P+ E + +L L+LT++QF+DLCI+
Sbjct: 169 KVYAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIML 228
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKE 234
GCDYC+SIRG+G TALKL+R HGSIE I+E I E +++IPEDWPY++AR LF +
Sbjct: 229 GCDYCESIRGVGPVTALKLMRTHGSIEKIIEFIESEESSNTKWKIPEDWPYKQARMLFLD 288
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
PEV+ D ++ +KWS P E+ L+ +L E F+ +RV I ++K QGRL+ FF
Sbjct: 289 PEVI-DGNEIDLKWSPPKEKELVEYLCDEKKFSEERVKSGIARLKKGLKSGIQGRLDGFF 347
Query: 295 KPVANT 300
+ V T
Sbjct: 348 QVVPKT 353
>gi|260941263|ref|XP_002614798.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
gi|238851984|gb|EEQ41448.1| hypothetical protein CLUG_05576 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 218/310 (70%), Gaps = 7/310 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RTIRL+E+G+KP+YVFDG+PP LK EL KR KR DA +
Sbjct: 18 LTSEDGETTSHLSGMFYRTIRLVESGLKPMYVFDGKPPVLKGGELEKRLLKRQDALKQIE 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ E G E++ K+ KRTV+ +++ ND+ K+LL+LMG+P + APSEAEAQCA L ++G+V
Sbjct: 78 DLKETGTVEELMKYEKRTVRASREQNDEAKKLLELMGIPYIVAPSEAEAQCAELARAGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + LRHL +RK+P+ + + +L+ L++ F+DLCIL GC
Sbjct: 138 FAAASEDMDTLCYEPKYLLRHLTVAEARKMPIDQIDYEAMLKGLDMDRSTFVDLCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN + +Y++PE+WPY EA++LF PE
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIQENPEKTKYKVPENWPYDEAKQLFMNPE- 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+T +++ +KW+ P+ +GL+ F+V + GF+ +R+ EK+K A QGRL+ FF V
Sbjct: 257 ITKGDEVDVKWNEPNVDGLVEFMVKQKGFSEERIRSGAEKLKKALKGGVQGRLDGFFTVV 316
Query: 298 ANTSAPIKRK 307
S+P KRK
Sbjct: 317 --KSSPAKRK 324
>gi|156845450|ref|XP_001645616.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
gi|317376167|sp|A7TJ59.1|FEN1_VANPO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156116281|gb|EDO17758.1| hypothetical protein Kpol_1033p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 377
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 213/303 (70%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR ++R + L
Sbjct: 54 LTNEAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETEKKLQ 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + K E+ R VKV+K+HND+ K+LL+LMG+P + AP EAE+QCA L K G+V
Sbjct: 114 EATDQAEKMKQER---RLVKVSKEHNDEAKQLLELMGIPYITAPCEAESQCAELAKCGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E + +L+ L+LT++QF+DL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIHEIDTELVLKGLDLTLEQFVDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI----NRERYQIPEDWPYQEARRLFKEPEV 237
DYCDSI+G+G TALKLI+++GS+E I+E I + +++IP DWPY++AR LF +P+V
Sbjct: 231 DYCDSIKGVGPVTALKLIKEYGSLEKIIEYIESDSSNSKWKIPNDWPYKDARELFLKPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ E +++KW P+E+GLI+FL E F+ +RV IE++K QGRL+ FF+ V
Sbjct: 291 INGNE-VELKWQPPNEKGLIDFLCGEKKFSEERVKSGIERLKKGLKSGVQGRLDGFFQVV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|315047298|ref|XP_003173024.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
gi|311343410|gb|EFR02613.1| hypothetical protein MGYG_09092 [Arthroderma gypseum CBS 118893]
Length = 459
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 159/303 (52%), Positives = 205/303 (67%), Gaps = 4/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 117 LTNETGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAE 176
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VTK+HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V
Sbjct: 177 EAKETGTTEDVEKFSRRTVRVTKEHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKV 236
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GC
Sbjct: 237 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLEKVLEGLGMDMTQFVDLCILLGC 296
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALKLIR HG++E ++E + R PY +AR LF P+V
Sbjct: 297 DYLDPIPKVGPNTALKLIRDHGTLEKVVEAMRATPRRNTSSRTTGPYLQARELFFNPDVR 356
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW+APD +GL+ FLV E GF+ +RV ++ + Q RLE FFKPV
Sbjct: 357 PADAPECDFKWTAPDVDGLVRFLVEEKGFSEERVRNGAARLTKNLKSAQQSRLEGFFKPV 416
Query: 298 ANT 300
A T
Sbjct: 417 AKT 419
>gi|367003685|ref|XP_003686576.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
gi|357524877|emb|CCE64142.1| hypothetical protein TPHA_0G03010 [Tetrapisispora phaffii CBS 4417]
Length = 380
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 209/303 (68%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL G+F RT+R+++ G+KP YVFDG+PP LK EL KR ++R + LA
Sbjct: 54 LTNENGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELTKRTARRVETEKKLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE + DI K KR VKV+K+HND+ K LL+LMG+P V AP EAE+QCA L K G+V
Sbjct: 114 EAVE---QADILKQEKRLVKVSKEHNDEAKHLLELMGIPYVNAPCEAESQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E +LE L LT++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINTETVLEGLELTLEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI----NRERYQIPEDWPYQEARRLFKEPEV 237
DYC+SIRG+G TALKLI++HGS+E I+E + + +++IPE+WPY+EAR LF P+V
Sbjct: 231 DYCESIRGVGPVTALKLIKEHGSLEKIIEFVESPDSNSKWKIPENWPYKEARDLFLNPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ D + +KW P EE L+++L + F+ +RV I++++ QGRL+ FFK V
Sbjct: 291 I-DGADIDLKWKPPQEEALVSYLCGDKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKVV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|154339662|ref|XP_001565788.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|317374905|sp|A4HFE4.1|FEN1_LEIBR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|134063106|emb|CAM45304.1| putative flap endonuclease-1 (FEN-1) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 395
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 152/296 (51%), Positives = 215/296 (72%), Gaps = 1/296 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE G+VTSHL G+F RT+R+++ G+KPIYVFDG+PP LK EL R K A+A +
Sbjct: 57 LTNEQGDVTSHLNGLFARTLRMIDEGIKPIYVFDGKPPKLKADELETRRQKAAEAEREFE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +AG+ E +EK SKRTV+V+++ ++ K+LL+LMGVPV++APSEAEAQCA L K G+
Sbjct: 117 KAKDAGDDEMMEKMSKRTVRVSREQIEESKKLLQLMGVPVIQAPSEAEAQCAELVKKGKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTFG+ LRHL ++K P+ E + ++L+ L+MDQF+DLCIL GC
Sbjct: 177 WAVGTEDMDALTFGSTVMLRHLNISDAKKRPIAEIHLDEVLQATGLSMDQFVDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY + GIG Q A + I+++G+IE+ LE+++ ++ +P D+ Y+EAR F PE VT
Sbjct: 237 DYVPKVPGIGPQRAWEGIQRYGNIESFLESLDAAKHMVPPDFCYREARAFFLNPE-VTRA 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
E++ I++S PDE GLI FLV E FN DRV K I +++AA K +QGRL++FF V
Sbjct: 296 EEIDIRFSEPDEAGLIQFLVKEKLFNPDRVNKGIARLRAALTKKTQGRLDNFFTIV 351
>gi|167391034|ref|XP_001739610.1| Flap endonuclease 1-A [Entamoeba dispar SAW760]
gi|317374900|sp|B0EN90.1|FEN1_ENTDS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|165896655|gb|EDR24004.1| Flap endonuclease 1-A, putative [Entamoeba dispar SAW760]
Length = 376
Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 223/312 (71%), Gaps = 8/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ +E GE TSH+ G F RTI+L+E+G+KP+YVFDG+PP++K EL KR A + L
Sbjct: 54 MVDEFGETTSHIIGTFYRTIKLIESGIKPVYVFDGKPPEMKDGELNKRKENAQKAQEQLD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E G+KE +K KRT ++TK+ +D+ K+LL+LMG+P VEA EAE CAAL K+G+
Sbjct: 114 KALEEGDKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCVEANCEAEGTCAALVKAGKC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LT G+ +R ++K P+ E+ ++ ILEE +M+QFIDLCIL GC
Sbjct: 174 YATATEDMDALTLGSEYVVRKFSASDNKKEPIREYSLSSILEETGFSMEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+I+G+G TA +LI+Q+ SIE +L++++ ++Y++PE+W Y+EAR LF P+V D
Sbjct: 234 DYCDTIKGVGPITAFELIQQYKSIENVLKHLS-DKYKVPENWKYKEARELFLHPDVA-DF 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PV 297
+++W+ DEEG+ +LV+E FN +RVTK IEK+K K+K +QGRL+SFF P+
Sbjct: 292 SDYKLEWNKLDEEGIKQYLVTEKHFNEERVTKGIEKLKNVKSKKAQGRLDSFFSVKKVPL 351
Query: 298 ANTSAP--IKRK 307
+ + A +KRK
Sbjct: 352 SKSEAASGVKRK 363
>gi|50292567|ref|XP_448716.1| hypothetical protein [Candida glabrata CBS 138]
gi|74608857|sp|Q6FM28.1|FEN1_CANGA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49528028|emb|CAG61679.1| unnamed protein product [Candida glabrata]
Length = 381
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 207/303 (68%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L+ E GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR S+R + LA
Sbjct: 54 LSTETGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRTSRREETEKKLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E K K +R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+V
Sbjct: 114 EATEEAEKM---KHERRLVKVSKEHNDEAKKLLELMGIPYVNAPGEAEAQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL +RK P+ E +L+ L LT+DQFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEINTEIVLQGLELTIDQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYCDSI+G+G TALKL+++HGS+E I+E I ++++PE+WPY+EAR LF +P+V
Sbjct: 231 DYCDSIKGVGPVTALKLMKEHGSLEKIVEYIESGEANNKWKVPENWPYKEARELFVKPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ D ++ +KW+ P E+ LI +L E F+ +RV I++++ QGRL+ FFK V
Sbjct: 291 I-DANEIDLKWTPPKEDELIQYLCHEKKFSEERVRSGIKRLQKGLKSGVQGRLDGFFKVV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|67470614|ref|XP_651270.1| FEN-1 nuclease [Entamoeba histolytica HM-1:IMSS]
gi|317374901|sp|C4M6G8.1|FEN1_ENTHI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56467989|gb|EAL45884.1| FEN-1 nuclease, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710440|gb|EMD49517.1| Flap endonuclease, putative [Entamoeba histolytica KU27]
Length = 376
Score = 316 bits (809), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 223/312 (71%), Gaps = 8/312 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ +E GE TSH+ G F RTI+L+E+G+KPIYVFDG+PP++K EL KR A + L
Sbjct: 54 MVDEFGETTSHIIGTFYRTIKLIESGIKPIYVFDGKPPEMKDGELHKRKENAQKAQEQLD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E G+KE +K KRT ++TK+ +D+ K+LL+LMG+P +EA EAE CAAL K+G+
Sbjct: 114 KALEEGDKEQAKKLMKRTARMTKEQSDEVKKLLQLMGIPCIEANCEAEGTCAALVKAGKC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LT G+ +R ++K P+ E+ ++ ILEE TM+QFIDLCIL GC
Sbjct: 174 YATATEDMDALTLGSEHVVRKFSANDNKKDPIREYSLSSILEETGFTMEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC++I+G+G TA +LI+Q+ SIE IL++++ ++Y++PE+W Y+EAR LF P+V D
Sbjct: 234 DYCETIKGVGPITAFELIQQYKSIENILQHLS-DKYKVPENWKYKEARELFLHPDVA-DF 291
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PV 297
+++W+ DEEG+ +LV+E FN +RV+K IEK+K K+K +QGRL+SFF P+
Sbjct: 292 SDYKLEWNKIDEEGIKKYLVTEKHFNEERVSKGIEKLKNVKSKKAQGRLDSFFNVKKVPL 351
Query: 298 ANTSAP--IKRK 307
+ + A +KRK
Sbjct: 352 SKSEAASGVKRK 363
>gi|365989632|ref|XP_003671646.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
gi|343770419|emb|CCD26403.1| hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Length = 384
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/304 (50%), Positives = 207/304 (68%), Gaps = 9/304 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+AGE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR ++RA+ A
Sbjct: 54 LTNDAGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELDKRIARRAETEKKFA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + K E+ R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+V
Sbjct: 114 EATDQAEKIKQER---RLVKVSKEHNDEAKKLLELMGIPYVNAPGEAEAQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E ++L+ L LT++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIQEINTEQVLQGLELTLEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPE 236
DYC++IRGIG TA KLI++HGS+E I+E I +++++PE+WPY+EAR LF P+
Sbjct: 231 DYCENIRGIGPVTAFKLIKEHGSLEKIIEFIESDENTNKKWKVPENWPYKEARELFVTPD 290
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
++ D Q+ +KW P E+ LI FL E FN +RV I++++ Q RLE FFK
Sbjct: 291 II-DGNQITLKWEPPKEDALIEFLCKEKLFNEERVKAGIKRLQKGLKAGVQTRLEGFFKV 349
Query: 297 VANT 300
V T
Sbjct: 350 VPKT 353
>gi|440301029|gb|ELP93476.1| Flap endonuclease, putative [Entamoeba invadens IP1]
Length = 374
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 146/305 (47%), Positives = 218/305 (71%), Gaps = 5/305 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE GE TSH+ G F RTI+L+ +G+KPIYVFDG+PP++K +EL KR + +A + L
Sbjct: 54 LVNEYGETTSHIIGTFYRTIKLMTSGVKPIYVFDGKPPEMKTEELKKRQTNAKEAIEKLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E+G+KE+I+K KRT ++TK+ +DD K+L++LMG+P +EA EAE CA L KSG+
Sbjct: 114 KAKESGDKEEIKKQMKRTARMTKEQSDDVKKLVELMGIPAIEANCEAEGTCAELVKSGKC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD+LT G+ LR ++K P+ E+ + ILEE TMD FIDLCIL GC
Sbjct: 174 FATATEDMDALTLGSDIVLRKFSASDNKKEPIREYSLKSILEETGFTMDMFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC++I+GIG TA ++I+++ +IE +L+++++ +Y +P+ W Y+EAR LF P+ VT
Sbjct: 234 DYCETIKGIGPVTAFEMIKEYKTIENLLKHLDKGKYIVPDGWKYKEARNLFLHPD-VTKA 292
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK----PV 297
+ + ++W P+EE L+ +LV+E FN +RV I+K+K K+K +QGRL+SFFK P+
Sbjct: 293 DNITLEWKKPNEEELLKYLVTEKHFNEERVKSGIQKMKEIKSKGTQGRLDSFFKVKKAPL 352
Query: 298 ANTSA 302
+SA
Sbjct: 353 EKSSA 357
>gi|326478513|gb|EGE02523.1| flap endonuclease [Trichophyton equinum CBS 127.97]
Length = 353
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 198/272 (72%), Gaps = 4/272 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR ++A+A +
Sbjct: 49 LTNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRTMRKAEAQEAAE 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN +CKRLL LMG+P ++AP+EAEAQCA L K+G+V
Sbjct: 109 EAKETGTTEDVEKFSRRTVRVTREHNAECKRLLGLMGIPYLDAPTEAEAQCAVLAKAGKV 168
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ ASEDMD+L F AP LRHL RK P++E + K+LE L + M QF+DLCIL GC
Sbjct: 169 FGAASEDMDTLCFAAPVLLRHLTFSEQRKEPILEIHLDKVLEGLGMDMTQFVDLCILLGC 228
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HG++E ++E I +++Y IPEDWPY +AR LF P+V
Sbjct: 229 DYLDPIPKVGPNTALKMIRDHGTLEKVVEAIESDPKKKYVIPEDWPYLQARELFFNPDVR 288
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSD 269
D + KWSAPD EGL+ FLV E GF+ D
Sbjct: 289 PADAPECDFKWSAPDVEGLVRFLVEEKGFSED 320
>gi|388854784|emb|CCF51677.1| probable DNA repair endonuclease rad2 [Ustilago hordei]
Length = 374
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/309 (49%), Positives = 214/309 (69%), Gaps = 5/309 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL G F RT+R+++ G+KP+YVFDG PPDLKK+ L KR+ +R +A +
Sbjct: 54 LMTESGETTSHLLGFFYRTLRMIDYGIKPMYVFDGTPPDLKKELLQKRFGRREEAREQQE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + + E +++ ++R V+ T+QHN++ + LLKLMG+P V APSEAEAQCA L ++G+V
Sbjct: 114 EQKDVADVEKMDQLARRQVRPTRQHNEEVRHLLKLMGIPCVIAPSEAEAQCAELARAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA SEDMD+LTFG P L+HL +K+PV + ++ K LE L + M QFIDLCIL GC
Sbjct: 174 YAAGSEDMDTLTFGTPILLKHLTASEQKKLPVHQVDLPKALEGLGMDMAQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVV 238
DY D I+GIG +TALKLIR+H ++E ++E+ E QIPE WP+QEAR++F+ P V
Sbjct: 234 DYLDPIKGIGPKTALKLIREHKTLEKVVEHFKEEAKKSVQIPEHWPFQEARKIFENPHVQ 293
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
++ L +KW PD EG++ FL + GF+ DRV K EK++ + + QGRL+ FF
Sbjct: 294 KGKD-LDLKWETPDVEGMVKFLCQDKGFSEDRVRKGCEKLQKSLGQKQQGRLDGFFTVNR 352
Query: 299 NTSAPIKRK 307
+AP KRK
Sbjct: 353 EGAAP-KRK 360
>gi|448102657|ref|XP_004199858.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
gi|359381280|emb|CCE81739.1| Piso0_002405 [Millerozyma farinosa CBS 7064]
Length = 343
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 209/303 (68%), Gaps = 5/303 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL GMF RTIR+++ +KP+YVFDG+PP LK EL KR ++ +A +
Sbjct: 18 LTNEEGETTSHLSGMFYRTIRMVDNNIKPVYVFDGKPPVLKGGELEKRLLRKEEAIKQME 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ ED+ ++ KRTV+VT++ N + K+LL+LMG+P V+AP EAEAQCA L + G+V
Sbjct: 78 NIKDEATVEDMVRYEKRTVRVTREQNQEAKKLLELMGIPYVDAPCEAEAQCAELARKGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD++ + P LRHL +RK+P+ + E +K+LE L + D FIDLCIL GC
Sbjct: 138 FAAASEDMDTICYEPPFLLRHLTVAEARKLPIDQIEYSKVLESLEMDKDTFIDLCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+E N ++ +Y++PE+WPY EAR LF PE
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDKIVEFLRANPDKTKYKVPENWPYTEARELFLHPE- 256
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
V + + + +KW PD EGLI ++V + GF+ +R+ EK+K QGRL+ FF+ +
Sbjct: 257 VQNADDINLKWKEPDVEGLIEYMVKQKGFSEERIRSGAEKLKKGLKGGVQGRLDGFFQVI 316
Query: 298 ANT 300
+
Sbjct: 317 PKS 319
>gi|403414469|emb|CCM01169.1| predicted protein [Fibroporia radiculosa]
Length = 400
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/300 (49%), Positives = 211/300 (70%), Gaps = 17/300 (5%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
SHL G F RTIR++E G+KP+YVFDG+PP++K L+KR ++R +A ++ EA E G E
Sbjct: 55 SHLMGFFYRTIRMVENGIKPLYVFDGKPPEMKAGVLSKRLARREEAKEEGEEAKETGTTE 114
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
D+++FS+RTVKVT++HN++C+RLL LMG+P V APSEAEAQCA L + G+VYA SEDMD
Sbjct: 115 DVDRFSRRTVKVTREHNEECRRLLGLMGIPFVVAPSEAEAQCAELARGGKVYAAGSEDMD 174
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+LTF AP RHL +RK P+ E + K LE L + M QFIDLCIL GCDY + I+GI
Sbjct: 175 TLTFSAPVLYRHLTFSEARKQPISEIHLDKALEGLEMNMSQFIDLCILLGCDYLEPIKGI 234
Query: 191 GGQTALKLIRQHGSIETILENINRE----------------RYQIPEDWPYQEARRLFKE 234
G ++ALKL+R+HG++ ++E++ + IPE+WP++EA+++F++
Sbjct: 235 GPKSALKLVREHGNLGAVIEHLQEKLAAKEEAKEDGKKKKGGISIPEEWPWEEAKKVFEK 294
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P+ VT +Q+ I+W +PD +GL+ FLV+E GFN +RV K EK+ N QGRL+ FF
Sbjct: 295 PD-VTPADQIDIEWKSPDADGLVQFLVTEKGFNEERVRKGAEKLAKFLNAKQQGRLDGFF 353
>gi|119192254|ref|XP_001246733.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 368
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 206/313 (65%), Gaps = 20/313 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL G F RT+R+++ G+KP+YVFDG PP LK ELAKR +++ +A +
Sbjct: 39 LMNESGETTSHLMGFFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRMARKQEAAEQHE 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+EKFS+RTV+VT++HN++ AP+EAEAQCA L ++G+V
Sbjct: 99 EAKETGTAEDVEKFSRRTVRVTREHNEEY-------------APTEAEAQCAVLARAGKV 145
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E + ++LE L + QF+DLCIL GC
Sbjct: 146 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHLERVLEGLGMDRKQFVDLCILLGC 205
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETI---LENINRERYQIPEDWPYQEARRLFKEPEV- 237
DY D I +G TALK+IR HGS+E + +EN +++Y IPEDWPY++AR LF EP+V
Sbjct: 206 DYVDPIPKVGPNTALKMIRDHGSLEKVVEAMENDPKKKYTIPEDWPYEQARDLFFEPDVR 265
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
D + KW +PD EGL+ FLV GF+ DRV +++ + Q RLE FFKPV
Sbjct: 266 PADHPECDFKWESPDVEGLVKFLVEGKGFSEDRVRSGAARLQKNLKTAQQSRLEGFFKPV 325
Query: 298 ANT---SAPIKRK 307
A T A +KRK
Sbjct: 326 AKTEEEKASLKRK 338
>gi|426196176|gb|EKV46105.1| hypothetical protein AGABI2DRAFT_193982 [Agaricus bisporus var.
bisporus H97]
Length = 429
Score = 313 bits (801), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 226/358 (63%), Gaps = 53/358 (14%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML+N+AGE TSHL G F RTIR++E G+KP YVFDG+PPDLKK L+KR+ +R +A ++
Sbjct: 53 MLSNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRFERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G E+++K S+RTVKVTK+HN +C RLLKLMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTVEEVDKLSRRTVKVTKEHNAECIRLLKLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + L+ L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLEVALKGLEMNMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER------------------------ 216
CDY + IRG+G ++ALKLIR++GS+ I+ ++ RE+
Sbjct: 233 CDYLEPIRGVGPKSALKLIREYGSLGKIIAHL-REKEADKKAAAQSADEAEDEPAPTSDA 291
Query: 217 ---------------------YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 255
++PEDWP++EA++LF+ P+VV +QL+++W+ PD +G
Sbjct: 292 EPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP-ADQLELEWNNPDVDG 350
Query: 256 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF------KPVANTSAPIKRK 307
L+ FLV E GFN +RV K EK++ N QGRL+ FF KP T + K K
Sbjct: 351 LVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDKPAPATKSDSKTK 408
>gi|340052549|emb|CCC46830.1| putative flap endonuclease-1 (FEN-1), fragment [Trypanosoma vivax
Y486]
Length = 393
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 151/302 (50%), Positives = 210/302 (69%), Gaps = 1/302 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GEVTSHL G+F RT+R+++ G++PIYVFDG+ P LK +EL R K DA
Sbjct: 57 LTNDMGEVTSHLNGLFFRTLRMVDEGLRPIYVFDGKAPTLKSKELQNRRQKADDAIQKFK 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E +EK KRTV++T++ ++ K+LL+LMG+PVV+APSEAEAQCA L K +
Sbjct: 117 KAQEEGDAEMMEKMGKRTVRLTQEQMEEAKKLLQLMGIPVVQAPSEAEAQCAELVKKNKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+LTFGAP LRHL ++K P+ EF + IL+ +TM+QF+DLCIL GC
Sbjct: 177 WAVGTEDMDALTFGAPIMLRHLTYSEAKKRPIAEFHLDDILQTSGMTMEQFVDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG A + I++ SIE +E+++ ++ +PED+ Y EAR+ F PEV+ E
Sbjct: 237 DYVPKIPGIGPHKAWEGIKKFHSIEAFIESLDSAKHVVPEDFHYSEARQFFIAPEVIPGE 296
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
E ++I++ PDEEGLI FLV+E FN DRV K I++++ A K +QGRL+ FF
Sbjct: 297 E-VEIQFREPDEEGLIQFLVNEKRFNRDRVEKGIQRLRNAIGKKTQGRLDQFFVITKPVR 355
Query: 302 AP 303
AP
Sbjct: 356 AP 357
>gi|410074109|ref|XP_003954637.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
gi|372461219|emb|CCF55502.1| hypothetical protein KAFR_0A00640 [Kazachstania africana CBS 2517]
Length = 379
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 212/303 (69%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL+KR ++R + T L
Sbjct: 54 LATDSGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRTARREETTKKLD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + K K +R VKV+K+HND+ K+LL+LMG+P V AP EAEAQCA L K G+V
Sbjct: 114 EATDIAEKI---KHERRLVKVSKEHNDEAKKLLELMGIPYVNAPCEAEAQCAELAKVGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P +RHL ++K P+ E +L+ ++LT++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLVRHLTFSEAKKEPIQEINTEIVLQSMDLTLEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYC+SIRG+G TALKLI++HGS+E I+E I+ + +++IPE+WPY+EAR LF +P+V
Sbjct: 231 DYCESIRGVGPVTALKLIKEHGSLEKIVEYIDSGDTKTKWKIPENWPYKEARELFLKPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ + + +KW+ P E+ LI++L + GF+ +RV I++++ QGRL+ FFK V
Sbjct: 291 INGND-ITLKWNPPKEQELIDYLCKDKGFSEERVKSGIKRLQKGLKSGVQGRLDGFFKAV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|402218593|gb|EJT98669.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/318 (48%), Positives = 212/318 (66%), Gaps = 18/318 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML N+ GE TSHL G F RTIR++E G+KP YVFDG+PP+LK LAKR+ ++ +A ++
Sbjct: 53 MLMNDQGETTSHLMGFFYRTIRMVENGIKPAYVFDGRPPELKSGVLAKRFERKEEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDI + + RTV+VT++HN++C++LL LMG+P V APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTVEDIARLAGRTVRVTREHNEECQKLLALMGIPCVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A SEDMD+LTF P LRHL ++K+P+ E + LE L + M +FIDLCIL G
Sbjct: 173 VFAAGSEDMDTLTFNTPILLRHLTFSEAKKMPISEISLELALEGLEMNMSKFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI-----------------NRERYQIPEDW 223
CDY + I+GIG ++ALKL+R+H ++E ILE + R Q+P+DW
Sbjct: 233 CDYLEPIKGIGPKSALKLVREHDNMEEILETLRGKMVKKESKGDGTPPKKRGGVQVPDDW 292
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN 283
P+++A+ LF P VT ++L ++W PD +GLI FLV + GFN DRV K EK+ N
Sbjct: 293 PWEKAKELFIHP-AVTPADELTLEWKDPDVDGLIEFLVRQKGFNEDRVRKGAEKLSKMLN 351
Query: 284 KSSQGRLESFFKPVANTS 301
QGRL+ FFK + +S
Sbjct: 352 SKQQGRLDGFFKAMPKSS 369
>gi|409079272|gb|EKM79634.1| hypothetical protein AGABI1DRAFT_114134 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 423
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/358 (46%), Positives = 226/358 (63%), Gaps = 53/358 (14%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML+N+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ +R +A ++
Sbjct: 53 MLSNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFERREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G E+++K S+RTVKVTK+HN +C RLLKLMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTVEEVDKLSRRTVKVTKEHNAECIRLLKLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + L+ L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILYRHLTFSEAKKQPISEINLEAALKGLEMNMSQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRER------------------------ 216
CDY + IRG+G ++ALKLIR++GS+ I+ ++ RE+
Sbjct: 233 CDYLEPIRGVGPKSALKLIREYGSLGKIIAHL-REKEADKKAAAQSADEAEDEPAPTSDA 291
Query: 217 ---------------------YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 255
++PEDWP++EA++LF+ P+VV +QL+++W+ PD +G
Sbjct: 292 EPAEDEPKKKPKKGKGKGAGGIKVPEDWPWEEAKKLFENPDVVP-ADQLELEWNNPDVDG 350
Query: 256 LINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF------KPVANTSAPIKRK 307
L+ FLV E GFN +RV K EK++ N QGRL+ FF KP T + K K
Sbjct: 351 LVQFLVQEKGFNEERVRKGAEKLQKFLNTKQQGRLDGFFSVKPKDKPAPATKSDSKTK 408
>gi|254585117|ref|XP_002498126.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
gi|317376173|sp|C5DZA9.1|FEN1_ZYGRC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238941020|emb|CAR29193.1| ZYRO0G02860p [Zygosaccharomyces rouxii]
Length = 379
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 204/303 (67%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L+ E+GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR KR D L
Sbjct: 54 LSTESGETTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPILKSFELKKRSDKRVDTEKKLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV+ K E+ R VKV+ +HND+ K LLKLMG+P + AP EAEAQCA L K G+V
Sbjct: 114 EAVDQAEKLKQER---RLVKVSPEHNDEAKYLLKLMGIPYIVAPCEAEAQCAQLAKDGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E + +L+ L LT +QF+DL I+ GC
Sbjct: 171 YAAASEDMDTLCYKTPYLLRHLTFSEAKKEPIHEIDTELVLQGLELTQEQFVDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYC+SIRGIG TALKLI++HGS+E I+E I ++++PEDWPY EAR+LF P+V
Sbjct: 231 DYCESIRGIGPVTALKLIKEHGSLEKIVEFIESGQANNKWKVPEDWPYNEARQLFLNPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
V ++ + +KW+ PDEE LI FL E FN +RV I++++ Q RL+ FF+ V
Sbjct: 291 VNSQD-INLKWNPPDEEKLIEFLCHEKKFNEERVKSGIKRLQKGLKSGVQVRLDGFFQKV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|255713324|ref|XP_002552944.1| KLTH0D05126p [Lachancea thermotolerans]
gi|317374904|sp|C5DGG4.1|FEN1_LACTC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|238934324|emb|CAR22506.1| KLTH0D05126p [Lachancea thermotolerans CBS 6340]
Length = 385
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 210/298 (70%), Gaps = 8/298 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E+GE TSHL G+F RT+R+++ G+KP YVFDG+PP LK EL+KR ++RA + L
Sbjct: 54 LASESGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVLKSHELSKRSARRATTEEKLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE K K +R VKVT +HN++ K+LL+LMG+P VEAP EAEAQCA L K+G+V
Sbjct: 114 EAVEEAEKL---KHERRLVKVTPEHNEEAKKLLRLMGLPYVEAPCEAEAQCAELAKAGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E +L+ L L+++QFIDL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPFLLRHLTFSEAKKEPIHEINTEILLQGLELSIEQFIDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYCDSIRG+G TALKLI++H ++E I+E I ++++PE+WP++EAR+LF +P+V
Sbjct: 231 DYCDSIRGVGPVTALKLIKEHKTLENIVEYIESGQANNKWKVPENWPFKEARQLFLDPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
V E + +KWS P E+ L++F+ E GFN +R+ I++++ QGRL+ FFK
Sbjct: 291 VKGSE-VDLKWSEPQEQELVDFMCKEKGFNEERIRSGIKRLQKGLKTGVQGRLDGFFK 347
>gi|255721403|ref|XP_002545636.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
gi|317374882|sp|C5M2X8.1|FEN1_CANTT RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|240136125|gb|EER35678.1| structure-specific endonuclease RAD27 [Candida tropicalis MYA-3404]
Length = 374
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 202/298 (67%), Gaps = 3/298 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHL G+F RTI+++E +KP+YVFDG+PP LK EL KR +R +A
Sbjct: 54 LTNDDGETTSHLSGIFYRTIKMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQKD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G ED KF KR V+V+++ N++ K+LL+LMG+P+VEAP EAEAQCA L + G+V
Sbjct: 114 ALKDEGTVEDHLKFEKRLVRVSREQNEEAKKLLELMGIPIVEAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P+ LRHL +RKIP+ E + + L++ +QF+DLCIL GC
Sbjct: 174 YAAASEDMDTLCYEPPQLLRHLTFAEARKIPIDEISYKEAMAGLDMNKEQFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINR--ERYQIPEDWPYQEARRLFKEPEVVT 239
DYC++IRG+G TA KLI++HGS+E I+E I + +Y +PE+WPY EAR LF PE V
Sbjct: 234 DYCETIRGVGPVTAYKLIKEHGSLEKIVEWIEKGNTKYTVPENWPYAEARELFLNPE-VK 292
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ +KW PD EGLI ++V GF+ DR+ EK+K QGRL+SFF V
Sbjct: 293 KASDISLKWKEPDVEGLIEYMVKGKGFSEDRIRSGAEKLKKGLKGGVQGRLDSFFTVV 350
>gi|401413646|ref|XP_003886270.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
gi|325120690|emb|CBZ56245.1| putative flap endonuclease-1 [Neospora caninum Liverpool]
Length = 545
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 154/311 (49%), Positives = 210/311 (67%), Gaps = 8/311 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
TN+AG+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A
Sbjct: 55 FTNDAGDCTSHIAGMLNRAIRLLEQGIRPVYVFDGKPPELKSGELAKRREVRESAQVAAE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E++ K R+V+V++QHNDD KRLL+LMG+PVVEAP EAEAQCA L K +V
Sbjct: 115 KAREEGNAEELRKQIVRSVRVSQQHNDDIKRLLRLMGLPVVEAPCEAEAQCAELTKHKKV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLC 176
+A A+ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFID C
Sbjct: 175 WATATEDADALTFGATRLIRNLTFSERTGSSASASAILVIDLPTLLEELKFSQEQFIDFC 234
Query: 177 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
IL GCDYC +++G+G +TA LIR+HGS+E ILE ++ ++ IPE + +QEAR F+ P+
Sbjct: 235 ILCGCDYCGTLKGVGAKTAYGLIREHGSVEKILEVVDPQK--IPEAFCFQEARAFFRNPD 292
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
VT +Q+Q+ W D EGL FLV EN FN RV I ++K A+ K++Q RLESFF
Sbjct: 293 -VTPADQIQLTWGEVDVEGLKTFLVKENQFNEQRVENYIARLKKARGKTAQTRLESFFGA 351
Query: 297 VANTSAPIKRK 307
S+ + K
Sbjct: 352 AVTKSSSLMHK 362
>gi|354546051|emb|CCE42780.1| hypothetical protein CPAR2_204230 [Candida parapsilosis]
Length = 383
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 143/301 (47%), Positives = 208/301 (69%), Gaps = 5/301 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL G F RTIR++E +KP+YVFDG+PP LK EL KR +R +A +
Sbjct: 54 LTNEDGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + G+ ++ K+ KR V+V + ND+ K+LL+LMG+P V AP EAEAQCA L + G+V
Sbjct: 114 QIKDEGSVAEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL +RK+P+ + ++ +E L + DQFIDLCIL GC
Sbjct: 174 YAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKDQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ ++E N ++ ++++PE+WPY+EAR LF PEV
Sbjct: 234 DYCETIKGVGPVTAYKLIKEHGSLDNLVEYLQNNPDKTKFKVPENWPYKEARELFLHPEV 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ + ++++KW PD +GLI ++V + GF+ DR+ EK+K QGRL+ FF V
Sbjct: 294 M-EASKVELKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFSVV 352
Query: 298 A 298
+
Sbjct: 353 S 353
>gi|149239008|ref|XP_001525380.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
gi|317374907|sp|A5E121.1|FEN1_LODEL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146450873|gb|EDK45129.1| structure-specific endonuclease RAD27 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 384
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 147/307 (47%), Positives = 212/307 (69%), Gaps = 8/307 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ GE TSHL G+F RTIR++E +KP+YVFDG+PP LK EL KR KR +A +
Sbjct: 54 LTNDEGETTSHLSGIFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLKREEAQKQID 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + D+ K+ KR V+V++ ND+ K+LL+LMG+P V AP EAEAQCA L + G+V
Sbjct: 114 NLKDDASVSDMTKYQKRLVRVSRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P+ LRHL +RK+P+ + + ++ L++T +QFIDLCIL GC
Sbjct: 174 FAAASEDMDTLCYEPPQLLRHLTFAEARKMPIDQITYKEAIQGLDMTKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN ++ +Y++PE+WPY EAR+LF +PEV
Sbjct: 234 DYCETIKGVGPVTAYKLIKEHGSLDNIVKYLQENPDKTKYKVPENWPYNEARQLFMKPEV 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ E +++KW PD +GLI ++V GF+ DR+ EK+K QGRL+ FF V
Sbjct: 294 LPALE-VELKWKEPDLDGLIEYMVKNKGFSEDRIRSGAEKLKKGLKAGIQGRLDGFFTVV 352
Query: 298 ---ANTS 301
+NTS
Sbjct: 353 PKYSNTS 359
>gi|452822684|gb|EME29701.1| flap endonuclease-1 [Galdieria sulphuraria]
Length = 377
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 155/298 (52%), Positives = 209/298 (70%), Gaps = 7/298 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGEVTSHL G+F RT RL+E G+ P YVFDG+PP+LK EL+KR R A A
Sbjct: 53 LRNEAGEVTSHLSGLFYRTTRLMELGIMPCYVFDGKPPELKSGELSKRIEARRQAEASAA 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G+ E EKF++R KV+ + + KRLL+LMG+P++EAP EAEAQCA+LCK V
Sbjct: 113 LAKEEGDVEAYEKFNRRVNKVSPEVIEQSKRLLRLMGIPILEAPEEAEAQCASLCKENLV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS-----RKIPVMEFEVAKILEELNLTMDQFIDLC 176
YA ASEDMDSLTFG+ + +R L ++ + I +EF + K L ELN + +QFIDLC
Sbjct: 173 YATASEDMDSLTFGSSKVIRQLWVGATSTAEKKGIHPLEFSLEKALLELNFSYEQFIDLC 232
Query: 177 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
IL GCDY DSIRGIG A LIR+HG++E LE I +E++ +P+ +PY +AR LF +P+
Sbjct: 233 ILCGCDYLDSIRGIGPYKAFNLIRKHGNLEGALEEI-KEKHDVPDHFPYDKARELFLKPK 291
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
V + + ++WS PDE+G+I LV E+ FN D + KA++++ +K+ SSQGRLE+FF
Sbjct: 292 VHSP-SSVVLEWSPPDEQGIIQMLVHESNFNEDNIRKALKRLAHSKHASSQGRLENFF 348
>gi|324514356|gb|ADY45841.1| Flap endonuclease 1-B [Ascaris suum]
Length = 320
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 136/280 (48%), Positives = 204/280 (72%), Gaps = 1/280 (0%)
Query: 15 GMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74
GMF RT+R++ G+KP+YVFDG+PP++K +EL KR +R +A LAEA E G+ +EK
Sbjct: 2 GMFYRTVRMITNGIKPVYVFDGKPPEMKCEELEKRTERRVEAEKQLAEAKEKGDAMAVEK 61
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
F +R VKVTK N++ K+LL+LMGVPV +AP EAEAQCA L ++G+V+A A+EDMD+L F
Sbjct: 62 FERRLVKVTKDQNEEAKKLLRLMGVPVFDAPCEAEAQCAELVRAGKVFAAATEDMDALAF 121
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
G+ R LR L ++K+PV E + ++L++ + M QF+DLCIL GCDY +IRGIG +
Sbjct: 122 GSKRLLRQLTASEAKKLPVKEINLEQVLKDFEMDMPQFVDLCILLGCDYTKTIRGIGPKK 181
Query: 195 ALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEE 254
A +LI++H +IE +LENI+ E+Y +PE+W ++EARRLF +PE +T+ E + ++W PD E
Sbjct: 182 AFELIQKHKTIENVLENIDTEKYPVPENWQFREARRLFMKPE-ITNCEDINLQWGKPDTE 240
Query: 255 GLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
++ +L E FN +RV ++ +++ + + QGR++SFF
Sbjct: 241 EIVRYLCGEKNFNEERVRSSLVRMEKGRQSAQQGRIDSFF 280
>gi|367008554|ref|XP_003678778.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
gi|359746435|emb|CCE89567.1| hypothetical protein TDEL_0A02350 [Torulaspora delbrueckii]
Length = 380
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 148/303 (48%), Positives = 209/303 (68%), Gaps = 8/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L+ E GE TSHL G+F RT+R+++ G+KP YVFDG+PP +K EL KR S+R + LA
Sbjct: 54 LSTETGETTSHLMGIFYRTLRMIDNGIKPCYVFDGKPPVMKSHELGKRSSRREETEKKLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ K E+ R V+V+K+HND+ K+LL+LMGVP + AP+EAEAQCA L K G+V
Sbjct: 114 EAIDQAEKMKQER---RLVRVSKEHNDEAKQLLELMGVPYLTAPTEAEAQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K P+ E + +L L LT++QF+DL I+ GC
Sbjct: 171 YAAASEDMDTLCYRTPYLLRHLTFSEAKKEPIHEIDTETVLNGLGLTIEQFVDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI----NRERYQIPEDWPYQEARRLFKEPEV 237
DYC+SIRG+G TALKLI++HGS+E I+E + + +++IPEDWPY+EAR LF P+V
Sbjct: 231 DYCESIRGVGPVTALKLIKEHGSLEKIIEFVESDESNSKWKIPEDWPYKEARELFLNPDV 290
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ D ++ +KWS P E+ LI+FL ++ F+ +RV I ++K Q RL+ FF+ V
Sbjct: 291 I-DGNEVNLKWSPPKEDELIDFLCNQKKFSEERVRSGIVRLKKGLKSGVQVRLDGFFQVV 349
Query: 298 ANT 300
T
Sbjct: 350 PKT 352
>gi|448526873|ref|XP_003869406.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis Co 90-125]
gi|380353759|emb|CCG23271.1| hypothetical protein CORT_0D04310 [Candida orthopsilosis]
Length = 382
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 207/301 (68%), Gaps = 5/301 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL G F RTIR++E +KP+YVFDG+PP LK EL KR +R +A +
Sbjct: 54 LTNEEGETTSHLSGFFYRTIRMVENNIKPVYVFDGKPPVLKGGELEKRLLRREEAQKQMD 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + G +++ K+ KR V+V + ND+ K+LL+LMG+P V AP EAEAQCA L + G+V
Sbjct: 114 QIKDEGTVDEVMKYEKRLVRVGRDQNDEAKKLLELMGIPYVNAPCEAEAQCAELARGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + ++ +E L + +QFIDLCIL GC
Sbjct: 174 FAAASEDMDTLCYEPPYLLRHLTFAEARKMPIDQITYSEAMEGLGMPKEQFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE----NINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ ++E N ++ ++++PE+WPY+EAR LF PEV
Sbjct: 234 DYCETIKGVGPVTAYKLIKEHGSLDNLVEYLQKNPDKTKFKVPENWPYKEARELFLHPEV 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ E +++KW PD +GLI ++V + GF+ DR+ EK+K QGRL+ FF V
Sbjct: 294 IEATE-VELKWKEPDVDGLIEYMVKQKGFSEDRIRSGAEKLKKGLKGGVQGRLDGFFTVV 352
Query: 298 A 298
+
Sbjct: 353 S 353
>gi|154292277|ref|XP_001546714.1| hypothetical protein BC1G_14593 [Botryotinia fuckeliana B05.10]
Length = 302
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 181/239 (75%), Gaps = 3/239 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNE GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++A AT+ L
Sbjct: 64 MLTNEDGETTSHLMGMFYRTLRIVDNGIKPVYVFDGAPPKLKSGELAKRFQRKATATEGL 123
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDIEKFS+RTV+VT++HN +C+RLLKLMG+P + AP+EAEAQCAAL ++G+
Sbjct: 124 EEAKETGTAEDIEKFSRRTVRVTREHNAECQRLLKLMGIPYIIAPTEAEAQCAALARAGK 183
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+L F +P LRHL RK P+ E + K+L LN+ QF+DLCIL G
Sbjct: 184 VYAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEVSLEKVLTGLNMDRKQFVDLCILLG 243
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPE 236
CDY D I IG TALKLIR+HG +ET++ I +ERY IPEDWPYQ+AR LF +P+
Sbjct: 244 CDYLDPIPKIGPHTALKLIREHGDLETLVAWITADKKERYAIPEDWPYQDARELFFKPD 302
>gi|403216014|emb|CCK70512.1| hypothetical protein KNAG_0E02520 [Kazachstania naganishii CBS
8797]
Length = 380
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 147/302 (48%), Positives = 206/302 (68%), Gaps = 7/302 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G TSHL GMF RT+R+++ G+KP YVFDG PP LK+ EL KR +RA+ L
Sbjct: 54 LTDAEGGTTSHLMGMFYRTLRMVDNGIKPCYVFDGAPPALKQHELGKRTQRRAETEQRLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + K E+ R VKV+K+HN++ K+LL LMGVP V+AP EAEAQCA L K G+V
Sbjct: 114 EATDLAEKAKQER---RLVKVSKEHNEEAKKLLGLMGVPYVDAPGEAEAQCAELAKGGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L + P LRHL ++K PV E + +L+ + LT++QF+DL I+ GC
Sbjct: 171 YAAASEDMDTLCYKTPYLLRHLTFSEAKKEPVQEIDTLAVLDAMELTIEQFVDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DYC+SIRG+G TALKLIR+H S+E I++ I+ E++++PE+WPY+E R+LF +P+ V
Sbjct: 231 DYCESIRGVGPVTALKLIREHKSLEGIVQYIDSGSNEKWKVPENWPYKEVRKLFLDPD-V 289
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
T ++ +KW P EE L+ +L E F+ +RV +++++A QGRL+ FFK V
Sbjct: 290 TPASEITLKWEPPQEEELVKYLCGEKLFSEERVRSGVKRLRAGLKSGVQGRLDGFFKVVP 349
Query: 299 NT 300
T
Sbjct: 350 KT 351
>gi|363755676|ref|XP_003648053.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892089|gb|AET41236.1| hypothetical protein Ecym_7411 [Eremothecium cymbalariae
DBVPG#7215]
Length = 430
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 148/298 (49%), Positives = 205/298 (68%), Gaps = 8/298 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + GE TSHL G+F RT+R+++ G+KP YVFDG+PP+LK EL KR +R + L
Sbjct: 100 LASADGETTSHLMGVFYRTLRMVDNGLKPCYVFDGRPPELKSHELDKRSERRKETERKLE 159
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E E + +I K +R VKV K HN++ K+LL LMG+P V+APSEAEAQCA L K G+V
Sbjct: 160 ELTE---QAEILKHERRLVKVEKWHNEEAKKLLGLMGIPYVDAPSEAEAQCAELAKKGKV 216
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK P+ E + +L+ L+LT++QF+DL I+ GC
Sbjct: 217 FAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLDLTLEQFVDLGIMLGC 276
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN----RERYQIPEDWPYQEARRLFKEPEV 237
DYC+SI+GIG TALKLI++HGS+E I+E I ++++PE+W YQ+AR LF P+V
Sbjct: 277 DYCESIKGIGPVTALKLIKEHGSLEKIIEYIESGAANAKWKVPENWAYQDARELFLTPDV 336
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
V D ++L +KW P E+ LI ++ E GFN DR+ I+K++ QGRL+SFFK
Sbjct: 337 V-DADELTLKWEDPKEDELIEYMCKEKGFNEDRIRSGIQKLRKGLKSGVQGRLDSFFK 393
>gi|219125938|ref|XP_002183226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|317374908|sp|B7G7Y7.1|FEN1_PHATC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|217405501|gb|EEC45444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/339 (46%), Positives = 208/339 (61%), Gaps = 43/339 (12%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN GE TSH+QGMF RTIR + G++P++VFDG+PPD+K EL KR KR A L
Sbjct: 57 MLTNAEGETTSHIQGMFNRTIRYMTEGIRPVFVFDGKPPDVKSHELIKRREKREKAQAAL 116
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A A E GN E+ +K SKR V+ + N+DC++LL LMGVPVV AP EAEAQ AALCK+G
Sbjct: 117 AVASEEGNVEEQDKQSKRLVRAGTKENEDCRKLLTLMGVPVVTAPCEAEAQAAALCKAGL 176
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA +EDMD+LTF P +R L ++ K V K++E L ++ DQF+DLCI+ G
Sbjct: 177 VYATGTEDMDALTFATPILVRKLTFANASKSMVQTMNYNKVIEGLAISHDQFVDLCIMLG 236
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW----------------- 223
CDYCD+IRG+G +TALKLIR+HG+IE ++E I+R+++ +PE W
Sbjct: 237 CDYCDTIRGVGPKTALKLIREHGNIEKVIETIDRKKFVVPESWVPNEKKLDAQSDDDDEE 296
Query: 224 ---------------------PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVS 262
Y +AR+LF E EV+ D +++KW E L FLV
Sbjct: 297 GVESPSKEENNGIVDTEELIPAYVQARKLFNEHEVLND---IELKWKPCQAEDLQKFLVD 353
Query: 263 ENGFNSDRVTKAIEKIKAA--KNKSSQGRLESFFKPVAN 299
+ GFN DRV IEK++AA N Q R++SFF AN
Sbjct: 354 DMGFNVDRVKNNIEKLQAAYKANSKPQTRMDSFFAVKAN 392
>gi|401825763|ref|XP_003886976.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
gi|392998133|gb|AFM97995.1| flap endonuclease-1 [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 306 bits (783), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 199/286 (69%), Gaps = 3/286 (1%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
TSHL G+F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA EAG+
Sbjct: 59 TTSHLVGLFYRTIRMVELGITPVYVFDGAPPEIKMKELGKRNERRAMADKEYREASEAGD 118
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
K +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LC+ VY VA+ED
Sbjct: 119 KRLMEMYDKRKTKVTGVHVEECKRLLGLMGIPFETAPSEAEAYCAFLCRKRIVYGVATED 178
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
MDSLTFG+P LR+ S+K+PV+E+ + ++LE+L+L ++FIDLCIL GCDYCD+++
Sbjct: 179 MDSLTFGSPVVLRNFSGAQSKKLPVVEYNLRQLLEDLSLEQNEFIDLCILLGCDYCDTLK 238
Query: 189 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 248
GIG + AL LIR+H SIE IL+ E +P W Y+EA+++F + D + I W
Sbjct: 239 GIGPKKALGLIRKHRSIERILQE---ENLDVPGGWGYEEAQKIFMNLGEIGDSREFNISW 295
Query: 249 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
S+ D+ G++ FLV E GF+ +RV K +EK+ ++ KS QGRL+ F
Sbjct: 296 SSIDKSGIVKFLVEEKGFDLERVNKGVEKLINSRKKSMQGRLDGFI 341
>gi|343471550|emb|CCD16055.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 492
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 206/293 (70%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+AGEVTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL R + +A +
Sbjct: 97 LTNDAGEVTSHLNGIFFRTLRMIDEGLRPIYVFDGKPPSLKNSELDSRRQRAEEAKHEYE 156
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E +EK SKR V+V+++ D+ K LL+LMG+PVV+APSEAEAQCA L + +
Sbjct: 157 KAKEEGDDEAMEKMSKRMVRVSREQMDEVKTLLQLMGIPVVQAPSEAEAQCAELVRKDKA 216
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+L FGA LRHL ++K P+ E+ + ILE +TM+QFIDLCIL GC
Sbjct: 217 WAVGTEDMDALAFGARVMLRHLTYGEAKKRPIAEYHLEDILELAGMTMEQFIDLCILLGC 276
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG A + I+++GS+E LE+++ +Y +PE + Y EAR F PE VT
Sbjct: 277 DYVPKIPGIGPHKAWEGIKKYGSMEAFLESLDGTKYVVPEGFNYVEARNFFLHPE-VTPG 335
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E+++I++ PDEEGL+ FLV E FN DRV K I++++ A K +QGRL+ FF
Sbjct: 336 EEIEIQFREPDEEGLVKFLVQEKLFNKDRVLKGIQRLRDALAKKTQGRLDQFF 388
>gi|50310391|ref|XP_455215.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74605424|sp|Q6CLH4.1|FEN1_KLULA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|49644351|emb|CAG97923.1| KLLA0F02992p [Kluyveromyces lactis]
Length = 381
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 201/299 (67%), Gaps = 9/299 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E GE TSHL GMF RT+R+++ G+KP YVFDG PP+LKK EL KR +R D L
Sbjct: 54 LAGEDGETTSHLMGMFYRTLRMIDHGIKPCYVFDGSPPELKKYELDKRKVRREDTEAKLK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E + +I K +R VKV HN++ ++LL LMG+P V AP+EAEAQCA L KSG+V
Sbjct: 114 EATE---QAEIIKHERRLVKVLPWHNEEAQKLLSLMGIPYVVAPAEAEAQCAELAKSGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ EF+ I L+LT QFIDL I+ GC
Sbjct: 171 FAAASEDMDTLCYQTPVLLRHLTFSEARKLPIQEFDTDVIYNTLDLTQTQFIDLGIILGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE-----NINRERYQIPEDWPYQEARRLFKEPE 236
DYC+ I+G+G ALKLI++HGS+E I+E +I+ R++IPE W ++EAR LF +P+
Sbjct: 231 DYCEGIKGVGPVNALKLIKEHGSLEAIVEKFENGDISSGRWKIPEGWQFKEARDLFMQPD 290
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
V+ EE + +KW P E LI F+V E GFN DR+ IE+++ Q RL+SFFK
Sbjct: 291 VIPSEE-VTLKWEEPKAEELIEFMVKEKGFNEDRIKSGIERLRKGLKVGVQKRLDSFFK 348
>gi|396081098|gb|AFN82717.1| flap endonuclease-1 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 201/286 (70%), Gaps = 3/286 (1%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
TSHL G+F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + +A EAG+
Sbjct: 59 TTSHLVGLFYRTIRMVELGITPVYVFDGVPPEVKMKELGKRNERRATADKEYKDASEAGD 118
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
K +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LCK VY VA+ED
Sbjct: 119 KRLMEMYDKRKTKVTGIHVEECKRLLGLMGIPFETAPSEAEAYCALLCKKRAVYGVATED 178
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
MDSLTFG+P LR+ S+K+PV+E+ + ++LE+L+L D+FIDLCIL GCDYCD+++
Sbjct: 179 MDSLTFGSPVVLRNFSGTRSKKLPVVEYNLRQLLEDLSLDQDEFIDLCILLGCDYCDTLK 238
Query: 189 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 248
GIG + AL LI++H SIE IL+ N E P++W Y++A+++F+ + D ++ I W
Sbjct: 239 GIGPKKALGLIKKHRSIERILQEENLE---TPDEWRYEDAQKIFRNLAEIGDAKEFNISW 295
Query: 249 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ D G++ FLV E GF+ +RV K ++K+ + KS+QGRL+ F
Sbjct: 296 KSIDRNGIVKFLVEEKGFDLERVNKGVDKLINSGRKSTQGRLDGFI 341
>gi|237836211|ref|XP_002367403.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|211965067|gb|EEB00263.1| flap endonuclease-1, putative [Toxoplasma gondii ME49]
gi|221505908|gb|EEE31543.1| flap endonuclease-1, putative [Toxoplasma gondii VEG]
Length = 552
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 211/314 (67%), Gaps = 11/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
TN+AG+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A +
Sbjct: 55 FTNDAGDCTSHIAGMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E++ K R+V+V+KQHN+D KRLL+LMG+PVVEAP EAEAQCA L K+ +V
Sbjct: 115 KAREEGNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGLPVVEAPCEAEAQCAELTKNRKV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFI 173
+A A+ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFI
Sbjct: 175 WATATEDADALTFGATRLIRNLTFGERASGSGASATASGILVIDLPTLLEELQFSQEQFI 234
Query: 174 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
D CIL GCDYC +++G+G +TA L+++HGSIE ILE ++ E+ +P+ + +QEAR F+
Sbjct: 235 DFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGFCFQEAREFFR 292
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
PE VT +++ + W D +GL FLV EN FN RV I ++K A+ K++Q RLESF
Sbjct: 293 HPE-VTPADRVHVAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESF 351
Query: 294 FKPVANTSAPIKRK 307
F S+ + K
Sbjct: 352 FGATVTKSSSLMHK 365
>gi|449016220|dbj|BAM79622.1| probable flap structure-specific endonuclease 1 [Cyanidioschyzon
merolae strain 10D]
Length = 380
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/306 (52%), Positives = 209/306 (68%), Gaps = 14/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE+TSHL G+F RTI+LLE G+KPIYVFDG+ PDLK ELAKR S+R + A
Sbjct: 54 LTNESGEITSHLSGVFYRTIKLLELGIKPIYVFDGKAPDLKANELAKRRSRREEDEQAAA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E K+++R KV+ + D+ KRLL+LMG+PVVEAPSEAEAQCA L ++G
Sbjct: 114 KAREEGDLELYAKYARRVNKVSAETIDNVKRLLRLMGIPVVEAPSEAEAQCAVLTRAGLA 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLM-------DPSSRKIPVMEFEVAKILEELNLTMDQFID 174
YA ASEDMD+LTFG P +R+L + RK EF +A LE+L ++MDQFID
Sbjct: 174 YATASEDMDALTFGTPLLIRNLFAALASGAERKDRK--PSEFSLAITLEDLGISMDQFID 231
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+CIL GCDY +I IG AL L++QHG IE +L ++ + IP+D+ Y AR LFKE
Sbjct: 232 ICILCGCDYTCTIPKIGPYRALMLVKQHGCIEEVLASLRESNHPIPDDFDYLGARGLFKE 291
Query: 235 PEV--VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA--KNKSSQGRL 290
P V D E L ++W AP+EEGL+ FLV EN FN V KA+E++ A ++Q RL
Sbjct: 292 PHVKDAADIEPL-LEWHAPNEEGLVQFLVQENSFNEQLVRKAVERMTKALRSGVANQSRL 350
Query: 291 ESFFKP 296
++FFKP
Sbjct: 351 DNFFKP 356
>gi|221485037|gb|EEE23327.1| flap endonuclease-1, putative [Toxoplasma gondii GT1]
Length = 552
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 211/314 (67%), Gaps = 11/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
TN+AG+ TSH+ GM R IRLLE G++P+YVFDG+PP+LK ELAKR R A +
Sbjct: 55 FTNDAGDCTSHIAGMLNRAIRLLEQGVRPVYVFDGKPPELKSGELAKRRELRESAQEAAE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E++ K R+V+V+KQHN+D KRLL+LMG+PVVEAP EAEAQCA L K+ +V
Sbjct: 115 KAREEGNVEELRKQIVRSVRVSKQHNEDVKRLLRLMGLPVVEAPCEAEAQCAELTKNRKV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFI 173
+A A+ED D+LTFGA R +R+L S+ ++ ++ +LEEL + +QFI
Sbjct: 175 WATATEDADALTFGATRLIRNLTFGERSSGSGASATASGILVIDLPTLLEELQFSQEQFI 234
Query: 174 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
D CIL GCDYC +++G+G +TA L+++HGSIE ILE ++ E+ +P+ + +QEAR F+
Sbjct: 235 DFCILCGCDYCGTLKGVGAKTAYSLVKEHGSIEKILEVVDPEK--VPDGFCFQEAREFFR 292
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
PE VT +++ + W D +GL FLV EN FN RV I ++K A+ K++Q RLESF
Sbjct: 293 HPE-VTPADRVHVAWGEVDVDGLKAFLVQENQFNEQRVENYITRLKKARGKTAQTRLESF 351
Query: 294 FKPVANTSAPIKRK 307
F S+ + K
Sbjct: 352 FGATVTKSSSLMHK 365
>gi|72386509|ref|XP_843679.1| flap endonuclease-1 (FEN-1) [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|74830896|sp|Q57WW6.1|FEN1_TRYB2 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|317376199|sp|C9ZKW4.1|FEN1_TRYB9 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|62175773|gb|AAX69901.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei]
gi|70800211|gb|AAZ10120.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261326734|emb|CBH09707.1| flap endonuclease-1 (FEN-1), putative [Trypanosoma brucei gambiense
DAL972]
Length = 393
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 146/293 (49%), Positives = 205/293 (69%), Gaps = 1/293 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAG+VTSHL G+F RT+R+++ G++PIYVFDG+PP LK EL R + DA +
Sbjct: 57 LTNEAGDVTSHLSGIFFRTLRMIDEGLRPIYVFDGKPPTLKASELESRRQRAEDAKHEFE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E +EK SKR V+V + ++ K LL+LMG+PVV+APSEAEAQCA L K +
Sbjct: 117 KAKEEGDDEAMEKMSKRMVRVGRDQMEEVKTLLRLMGIPVVQAPSEAEAQCAELVKKNKA 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV +EDMD+L FG+ LRHL ++K P+ E+ + +ILE +M QFIDLCIL GC
Sbjct: 177 WAVGTEDMDALAFGSRVMLRHLTYGEAKKRPIAEYHLDEILEASGFSMQQFIDLCILLGC 236
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY I GIG A + I+++GS+E +E+++ RY +PE++ Y++AR F EPE VT
Sbjct: 237 DYVPRISGIGPHKAWEGIKKYGSLEAFIESLDGTRYVVPEEFNYKDARNFFLEPE-VTPG 295
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E++ I++ PDEEGLI FLV E F+ +RV K I++++ A K +QGRL+ FF
Sbjct: 296 EEIDIQFREPDEEGLIKFLVDEKLFSKERVLKGIQRLRDALTKKTQGRLDQFF 348
>gi|126653087|ref|XP_001388383.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
gi|317374887|sp|A3FPN7.1|FEN1_CRYPI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126117476|gb|EAZ51576.1| flap endonuclease 1 [Cryptosporidium parvum Iowa II]
Length = 490
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 212/311 (68%), Gaps = 14/311 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN +GE TSH+ GM +RT RLLEAG+KP++VFDG PP++KK EL KR +R A +L
Sbjct: 55 LTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G++E I+K S RT+ VTK+ +D K+LL +G+P ++APSEAEAQCA LCK G V
Sbjct: 115 KAQEIGDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCIDAPSEAEAQCAELCKDGLV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMD 170
Y V +ED DSLTFG P ++ L PS +K + +++ IL EL++ MD
Sbjct: 175 YGVVTEDADSLTFGTPIQIKQLNFSESSNKITDKSPSKQKNGMQIIKLSLILSELDINMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
QFIDLCILSGCDYC +IRGIG TA KL++++ +IE+IL+NI++ + IP ++ + + R
Sbjct: 235 QFIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNPIPGNFDFSKVRE 294
Query: 231 LFKEPEVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
LFK P +V+ Q++ IKWS P E L+ +L+ E FN RV E+IK +KNK+SQ
Sbjct: 295 LFKNP-LVSKNNQIKDLIKWSNPKYEELMEWLIKEQNFNEARVNSYCERIKKSKNKTSQT 353
Query: 289 RLESFFKPVAN 299
L+ FFK +N
Sbjct: 354 CLDGFFKTASN 364
>gi|67610024|ref|XP_667077.1| flap endonuclease 1 [Cryptosporidium hominis TU502]
gi|54658174|gb|EAL36849.1| flap endonuclease 1 [Cryptosporidium hominis]
Length = 454
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/311 (48%), Positives = 212/311 (68%), Gaps = 14/311 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN +GE TSH+ GM +RT RLLEAG+KP++VFDG PP++KK EL KR +R A +L
Sbjct: 19 LTNSSGESTSHINGMLSRTTRLLEAGIKPVFVFDGAPPEMKKDELTKRDERREKALAELE 78
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G++E I+K S RT+ VTK+ +D K+LL +G+P ++APSEAEAQCA LCK G V
Sbjct: 79 KAQEVGDEELIKKQSVRTIHVTKKQVEDVKKLLGFLGMPCIDAPSEAEAQCAELCKDGLV 138
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMD 170
Y V +ED DSLTFG P ++ L PS +K + +++ IL EL++ MD
Sbjct: 139 YGVVTEDADSLTFGTPIQIKQLNFSESSNKISDKSPSKQKNGMQIIKLSLILSELDINMD 198
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
QFIDLCILSGCDYC +IRGIG TA KL++++ +IE+IL+NI++ + +P ++ + + R
Sbjct: 199 QFIDLCILSGCDYCGTIRGIGTSTAYKLLKKYHNIESILKNIDQTKNPVPGNFDFSKVRE 258
Query: 231 LFKEPEVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
LFK P +V+ Q++ IKWS P E L+ +L+ E FN RV E+IK +KNK+SQ
Sbjct: 259 LFKNP-LVSKNNQIKDLIKWSNPKYEELMEWLIKEQNFNEARVISYCERIKKSKNKTSQT 317
Query: 289 RLESFFKPVAN 299
L+ FFK +N
Sbjct: 318 CLDGFFKSASN 328
>gi|209879882|ref|XP_002141381.1| Flap endonuclease 1 [Cryptosporidium muris RN66]
gi|317374886|sp|B6AFP1.1|FEN1_CRYMR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|209556987|gb|EEA07032.1| Flap endonuclease 1, putative [Cryptosporidium muris RN66]
Length = 472
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 206/302 (68%), Gaps = 9/302 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGE TSH+ GM +RTIRLLEAG+KP++VFDG+PP+LK +EL KR +R A +L
Sbjct: 55 LTNEAGESTSHISGMLSRTIRLLEAGIKPVFVFDGEPPELKMEELMKRKERREKAQQELE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E I K RT+K+TK+ +DD K +LKL+G+PV+EA SEAEAQCA LCK G V
Sbjct: 115 KAQEEGDTETIRKQLIRTIKITKEQSDDVKYMLKLLGIPVIEATSEAEAQCAELCKEGLV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQFI 173
Y VA+ED DSLTFG P +RHL + K + +++ +L +L L+M QF+
Sbjct: 175 YGVATEDADSLTFGTPLVIRHLNFSDGKFSDSKGNSKNSLQVIKLSTVLSDLGLSMQQFV 234
Query: 174 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
DLCIL GCDYC +IRGIG TA KL+++H IETI+ +++ ++ +P + Y + R LF
Sbjct: 235 DLCILCGCDYCGTIRGIGALTAYKLLKKHKDIETIINELDKNKHPLPMSFDYIKVRELFT 294
Query: 234 EPEVVTDEE-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V+ +E + ++KW+ P+ EGL +L+ + F+ RV +IK +K K++Q L+S
Sbjct: 295 NPNVIKAKEFRDKLKWTNPNLEGLSEWLIKQQNFSEVRVANYCTRIKKSKGKTAQTSLDS 354
Query: 293 FF 294
FF
Sbjct: 355 FF 356
>gi|440795563|gb|ELR16683.1| hypothetical protein ACA1_089310 [Acanthamoeba castellanii str.
Neff]
Length = 343
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/310 (46%), Positives = 214/310 (69%), Gaps = 24/310 (7%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
LTN +G+ TS+L G+++RT+RL+ G+KP +VFD S RA L
Sbjct: 53 FLTNPSGDDTSYLMGLWSRTLRLVACGIKPAFVFD---------------SVRA-----L 92
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS--EAEAQCAALCKS 118
A + + ++R V+VT H ++CK+LL LMG+PVV+AP+ EAEAQCA LC++
Sbjct: 93 GAAAQPQSAAHSPPGARRVVRVTPTHIEECKKLLGLMGMPVVQAPAGGEAEAQCAELCRA 152
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 178
G+V+AV SEDMD+LTFGAP LRHL +RK+P++E E+ K+LE L LTM+QFIDLCIL
Sbjct: 153 GKVFAVGSEDMDALTFGAPVLLRHLTFSEARKLPIVEIELPKVLEGLGLTMEQFIDLCIL 212
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
+GCDYCD+IRG+G + AL LI+QHGS+E +++N+++ + +P+ +P++ R LFK P V+
Sbjct: 213 AGCDYCDTIRGVGPKRALALIKQHGSVEQVIKNLDKAKNPLPDQFPFEATRELFKHPNVI 272
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA-KNKSSQGRLESFFKPV 297
+E ++++W +PDEEGL+ +LV+E GFN +RV K I +KA K + QGR++SFF
Sbjct: 273 PGDE-VELQWGSPDEEGLLEYLVAEKGFNEERVRKGIATLKAGRKPQPVQGRIDSFFTSA 331
Query: 298 ANTSAPIKRK 307
+S+ +K
Sbjct: 332 GKSSSSTLKK 341
>gi|302306477|ref|NP_982895.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|317374930|sp|Q75DS8.2|FEN1_ASHGO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|299788534|gb|AAS50719.2| ABL052Cp [Ashbya gossypii ATCC 10895]
gi|374106098|gb|AEY95008.1| FABL052Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 203/303 (66%), Gaps = 7/303 (2%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + GE TSHL GMF RT+R+++ G+KP YVFDG+PP LK EL KR +R + LA
Sbjct: 54 LASADGETTSHLMGMFYRTLRMVDHGLKPCYVFDGKPPVLKAHELDKRTERRKETEQKLA 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E E + +I K +R VKV + H + K+LL LMG+P V+AP EAEAQCA L K G+V
Sbjct: 114 ELTE---QAEIMKHERRLVKVEQWHVAEAKKLLGLMGIPYVDAPGEAEAQCAELAKKGKV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK P+ E + +L+ L L+ +Q +DL I+ GC
Sbjct: 171 FAAASEDMDTLCYRTPYLLRHLTFSEARKEPIHEIDTELVLQGLGLSQEQLVDLGIMLGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DYC+SI+G+G TALKLI++HGS+E I+E I+ ++++PE+WPY+EAR LF +P+V+
Sbjct: 231 DYCESIKGVGPVTALKLIKEHGSLENIVEFISSGGNAKWKVPENWPYKEARALFLQPDVL 290
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
D E + +KW P EE LI F+ E GFN DR+ I+K++ QGRL+SFFK
Sbjct: 291 -DAEGVSLKWEEPKEEELIAFMCKEKGFNEDRIKSGIQKLRKGLKGGVQGRLDSFFKVKP 349
Query: 299 NTS 301
T+
Sbjct: 350 KTT 352
>gi|294867245|ref|XP_002765023.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239864903|gb|EEQ97740.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 204/306 (66%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN AGEVTSH+ GM TRT+R++EAG+KP+YVFDG+PP LK ELAKR + A +DL
Sbjct: 57 LTNAAGEVTSHISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLK 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E I K + R+ +VT Q N D K+LL +MG ++EAP EAEA CAAL + G+
Sbjct: 117 EAIEKGDDEGIRKAAHRSTRVTPQMNADVKKLLTMMGCCIIEAPEEAEATCAALVRYGKC 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDP-------SSRKI--PVMEFEVAKILEELNLTMDQF 172
Y ++DMD LTFG+P +++L + S+ K PV E ++ +LE+L+++MDQF
Sbjct: 177 YGAVTDDMDVLTFGSPVQVKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVLEQLDVSMDQF 236
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP---YQEAR 229
ID CI+ GCDY D+IRGIG A KLI +H SIE +L++I++ ++ +PE W Y+ R
Sbjct: 237 IDFCIMCGCDYLDTIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTVR 296
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F + V + E + + W PD EGL FLV +N F+ DRV K I ++K K +Q R
Sbjct: 297 EYFLDAPAV-ERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMR 355
Query: 290 LESFFK 295
L++FFK
Sbjct: 356 LDTFFK 361
>gi|449329677|gb|AGE95947.1| structure-specific endonuclease of the XPG/RAD2 family
[Encephalitozoon cuniculi]
Length = 345
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 143/285 (50%), Positives = 194/285 (68%), Gaps = 3/285 (1%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+K
Sbjct: 60 TSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVGDK 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
E +E + KR KVT H D+CKRLL LMG+P APSEAEA CA LCK VY VA+EDM
Sbjct: 120 ELMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+LTFG+P LR+ S+++PVME + +ILE+L+L +FIDLCIL GCDYC +++G
Sbjct: 180 DALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLKG 239
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
IG + AL LI++H SI IL+N E ++P DW Y +A+++F + D I W
Sbjct: 240 IGPKKALGLIKKHRSIGNILKN---EDLEVPGDWRYSDAQKIFGSLAEIGDIRDFNISWD 296
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ D G++NFLV E GF+ +RV K I+K+ ++ K +QGRL+ F
Sbjct: 297 SIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFM 341
>gi|317376215|sp|A5DCF5.3|FEN1_PICGU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 374
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 203/300 (67%), Gaps = 5/300 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RTIRL+E G+KP+YVFDG+PP LK EL KR ++ +A
Sbjct: 54 LTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+AP EAEAQCA L +G+V
Sbjct: 114 DIKDTATVEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + + K +E L + FIDLCIL GC
Sbjct: 174 FAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN + ++++PE+WPY EAR LF P+V
Sbjct: 234 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVPENWPYAEARELFLNPDV 293
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+E + +KW P + L+ F+V + GF+ DRV EK+K QGRL+ FF V
Sbjct: 294 SPGKE-INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVV 352
>gi|190345050|gb|EDK36862.2| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 203/300 (67%), Gaps = 5/300 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RTIRL+E G+KP+YVFDG+PP LK EL KR ++ +A
Sbjct: 18 LTSEDGETTSHLSGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQE 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+AP EAEAQCA L +G+V
Sbjct: 78 DIKDTATVEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + + K +E L + FIDLCIL GC
Sbjct: 138 FAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN + ++++PE+WPY EAR LF P+V
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVPENWPYAEARELFLNPDV 257
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+E + +KW P + L+ F+V + GF+ DRV EK+K QGRL+ FF V
Sbjct: 258 SPGKE-INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVV 316
>gi|294893362|ref|XP_002774434.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239879827|gb|EER06250.1| flap exonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 407
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 204/306 (66%), Gaps = 13/306 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN AGEVTSH+ GM TRT+R++EAG+KP+YVFDG+PP LK ELAKR + A +DL
Sbjct: 57 LTNAAGEVTSHISGMVTRTLRMMEAGIKPVYVFDGKPPSLKTGELAKRREVKKKAEEDLK 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E I K + R+ +VT Q N D K+LL +MG ++EAP EAEA CAAL + G+
Sbjct: 117 EAIEKGDDEGIRKAAHRSTRVTLQMNADVKKLLTMMGCCIIEAPEEAEATCAALVRYGKC 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDP-------SSRKI--PVMEFEVAKILEELNLTMDQF 172
Y ++DMD LTFG+P +++L + S+ K PV E ++ +LE+L+++MDQF
Sbjct: 177 YGAVTDDMDVLTFGSPVQIKNLFNTLGSGQQGSAGKTTKPVYEMSLSTVLEQLDVSMDQF 236
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP---YQEAR 229
ID CI+ GCDY ++IRGIG A KLI +H SIE +L++I++ ++ +PE W Y+ R
Sbjct: 237 IDFCIMCGCDYLETIRGIGPNNAFKLIVEHKSIEGVLDHIDKTKFAVPESWAAGDYKTVR 296
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F + V + E + + W PD EGL FLV +N F+ DRV K I ++K K +Q R
Sbjct: 297 EYFLDAPAV-ERENMNLNWPVPDYEGLKKFLVDDNQFSEDRVEKYISRLKKCKQAKTQMR 355
Query: 290 LESFFK 295
L++FFK
Sbjct: 356 LDTFFK 361
>gi|19173066|ref|NP_597617.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
gi|74621278|sp|Q8SS91.1|FEN1_ENCCU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19168733|emb|CAD26252.1| STRUCTURE-SPECIFIC ENDONUCLEASE OF THE XPG/RAD2 FAMILY
[Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 194/285 (68%), Gaps = 3/285 (1%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+K
Sbjct: 60 TSHLVGFFYRTIRMVELGITPVYVFDGVPPEIKMKELEKRKERRAAADREYREASEVGDK 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
E +E + KR KVT H D+CKRLL LMG+P APSEAEA CA LCK VY VA+EDM
Sbjct: 120 ELMEMYDKRKTKVTGVHVDECKRLLGLMGIPFETAPSEAEAYCALLCKKKAVYGVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+LTFG+P LR+ S+++PVME + +ILE+L+L +FIDLCIL GCDYC +++G
Sbjct: 180 DALTFGSPVVLRNFNGTQSKRLPVMEHNLPQILEDLSLDHSEFIDLCILLGCDYCSTLKG 239
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
IG + AL LI++H SI IL+N E ++P DW Y +A+++F + + I W
Sbjct: 240 IGPKKALGLIKKHRSIGNILKN---EDLEVPGDWRYSDAQKIFGSLAEIGEIRDFNISWD 296
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ D G++NFLV E GF+ +RV K I+K+ ++ K +QGRL+ F
Sbjct: 297 SIDRNGIVNFLVEEKGFDLERVNKGIDKLINSRKKGTQGRLDCFI 341
>gi|146423306|ref|XP_001487583.1| hypothetical protein PGUG_00960 [Meyerozyma guilliermondii ATCC
6260]
Length = 338
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/300 (47%), Positives = 203/300 (67%), Gaps = 5/300 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+E GE TSHL GMF RTIRL+E G+KP+YVFDG+PP LK EL KR ++ +A
Sbjct: 18 LTSEDGETTSHLLGMFYRTIRLVENGIKPMYVFDGKPPVLKGGELEKRMIRKKEALKQQE 77
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + E++ ++ KR+V+VTK+ N++ K+LL+LMG+P V+AP EAEAQCA L +G+V
Sbjct: 78 DIKDTATVEEMVRYEKRSVRVTKEQNNEAKKLLELMGIPYVDAPCEAEAQCAELAVAGKV 137
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMD+L + P LRHL +RK+P+ + + K +E L + FIDLCIL GC
Sbjct: 138 FAAASEDMDTLCYSPPYLLRHLTFAEARKMPIDQIDYKKAMEGLEMDKQTFIDLCILLGC 197
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
DYC++I+G+G TA KLI++HGS++ I+ EN + ++++PE+WPY EAR LF P+V
Sbjct: 198 DYCETIKGVGPVTAFKLIKEHGSLDNIVKWIEENPDSTKFKVPENWPYAEARELFLNPDV 257
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+E + +KW P + L+ F+V + GF+ DRV EK+K QGRL+ FF V
Sbjct: 258 SPGKE-INLKWQEPKVDELVEFMVKQKGFSEDRVRSGAEKLKKGLKGGVQGRLDGFFSVV 316
>gi|221052642|ref|XP_002261044.1| flap exonuclease [Plasmodium knowlesi strain H]
gi|317376188|sp|B3L014.1|FEN1_PLAKH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|194247048|emb|CAQ38232.1| flap exonuclease, putative [Plasmodium knowlesi strain H]
Length = 595
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 147/305 (48%), Positives = 207/305 (67%), Gaps = 13/305 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VTK+ N++ K+LL LMG+PVVEAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTM 169
+A A+ED D+L FG +R+L + S R + E + ++L+ LNL M
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSTSQNKNKNSSKRGYILTEINLEQVLKGLNLNM 234
Query: 170 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
++FID CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQIP ++ + EAR
Sbjct: 235 NEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQIPSNFRFVEAR 294
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F P+V++ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q R
Sbjct: 295 DSFINPKVLSKEE-IKIDWGEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRR 353
Query: 290 LESFF 294
L++FF
Sbjct: 354 LDNFF 358
>gi|389582194|dbj|GAB64749.1| flap exonuclease [Plasmodium cynomolgi strain B]
Length = 624
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 147/315 (46%), Positives = 210/315 (66%), Gaps = 13/315 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VTK+ N++ K+LL LMG+PVVEAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTM 169
+A A+ED D+L FG +R+L + S R + E + ++L+ LNL+M
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSM 234
Query: 170 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
++FID CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQ+P ++ + EAR
Sbjct: 235 NEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEAR 294
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F P+V++ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q R
Sbjct: 295 DSFINPKVLSKEE-VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRR 353
Query: 290 LESFFKPVANTSAPI 304
L++FF S +
Sbjct: 354 LDNFFTACTKKSTKL 368
>gi|74824687|sp|Q9GZ01.1|FEN1_PLAFA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|9885425|gb|AAG01445.1| flap endonuclease-1 [Plasmodium falciparum]
Length = 650
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 210/314 (66%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L ++ R + E + ++L+ LNLTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARK 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V+ E+ ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL
Sbjct: 295 SFINPNVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DNFFTACTKKSTKL 367
>gi|124505315|ref|XP_001351399.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
gi|74876406|sp|Q7K734.1|FEN1_PLAF7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|11559508|gb|AAG37989.1|AF093702_1 flap endonuclease 1 [Plasmodium falciparum]
gi|6562723|emb|CAB62862.1| flap endonuclease 1 [Plasmodium falciparum 3D7]
Length = 672
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 210/314 (66%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L ++ R + E + ++L+ LNLTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARK 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V+ +E ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL
Sbjct: 295 SFINPNVLP-KEDIKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DNFFTACTKKSTKL 367
>gi|37719664|gb|AAR01941.1| flap endonuclease 1 [Plasmodium falciparum]
Length = 648
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 210/314 (66%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+IRL+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIRLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VT++ N++ K+LL LMG+P++EAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPIIEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L ++ R + E + ++L+ LNLTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANATSNQNKNKNNSKRGYILTEINLEQVLKGLNLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I+ENI++ +YQ+P ++ +QEAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIEKIIENIDQNKYQVPSNFRFQEARK 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V+ E+ ++I W+ P E L +FL+ + FN RVT I ++ A+ ++Q RL
Sbjct: 295 PFINPNVLPKED-IKIDWNEPQIEELKHFLIKDYNFNELRVTNYINRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DNFFTACTKKSTKL 367
>gi|356927843|gb|AET42633.1| flap endonuclease-1 [Emiliania huxleyi virus 202]
Length = 358
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 202/295 (68%), Gaps = 12/295 (4%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
GEVTSHL G+F RTIRL+EAG+KP+YVFDG+PP LK++EL KR ++A A L+E
Sbjct: 59 GEVTSHLTGLFYRTIRLIEAGIKPVYVFDGKPPQLKQKELDKRNERQAQA---LSELKVT 115
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
+ +IEK KR+V+ T++ +++ K+LL MG+PVV+AP EAEA CAA K+G+ YA A+
Sbjct: 116 DDSYEIEKQEKRSVRATREQSEEVKKLLTFMGIPVVQAPCEAEATCAAYVKAGKAYATAT 175
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +
Sbjct: 176 EDMDSLTFGSTHVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKT 235
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTD 240
I+GIG A +LI++H +IE +L+ + ++ + +PE +P + R LF P+V
Sbjct: 236 IKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFVTMVPEYYPIEAVRELFNNPDVDIT 295
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
+E + W PD E LI+FLV E F+SDRV K E+I +AK K +Q R+ FFK
Sbjct: 296 QE---LTWKPPDREALISFLVDEKKFSSDRVNKGCERILSAKAKGTQHRISQFFK 347
>gi|156094601|ref|XP_001613337.1| flap exonuclease [Plasmodium vivax Sal-1]
gi|317376189|sp|A5KAL1.1|FEN1_PLAVS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148802211|gb|EDL43610.1| flap exonuclease, putative [Plasmodium vivax]
Length = 623
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 207/305 (67%), Gaps = 13/305 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE+GE TSH+ G+ +R+I+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LTNESGETTSHISGLMSRSIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VT++ N++ K+LL LMG+PVVEAP EAE+QCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTRKQNEEAKKLLTLMGIPVVEAPCEAESQCAFLTKYNLA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL------------MDPSSRKIPVMEFEVAKILEELNLTM 169
+A A+ED D+L FG +R+L + S R + E + ++L+ LNL+M
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSANQNKNKNSSKRGYILTEINLEQVLKGLNLSM 234
Query: 170 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
++FID CIL GCDYCD+I+GIG +TA LI+++ SIE I+ENI++ +YQ+P ++ + EAR
Sbjct: 235 NEFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNSIEKIIENIDKNKYQVPSNFRFVEAR 294
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F P+V+ EE ++I W P E L NFL+ + FN RVT I ++ A+ ++Q R
Sbjct: 295 DSFINPKVLPKEE-VKIDWCEPKIEELKNFLIKDYNFNEVRVTNYINRLLKARKVTTQRR 353
Query: 290 LESFF 294
L++FF
Sbjct: 354 LDNFF 358
>gi|70942151|ref|XP_741275.1| flap exonuclease [Plasmodium chabaudi chabaudi]
gi|74978262|sp|Q4XXP8.1|FEN1_PLACH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56519555|emb|CAH78313.1| flap exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 479
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 145/314 (46%), Positives = 209/314 (66%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NEAGE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LMNEAGETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLL 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYDMA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L + S R + E + ++L+ L LTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P+++ Y EAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPDNFKYVEARQ 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL
Sbjct: 295 SFINPKVL-EKSEVKIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DTFFTTCTKKSTKL 367
>gi|241627391|ref|XP_002409855.1| endonuclease, putative [Ixodes scapularis]
gi|215503262|gb|EEC12756.1| endonuclease, putative [Ixodes scapularis]
Length = 384
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/247 (55%), Positives = 181/247 (73%), Gaps = 6/247 (2%)
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
+GN+EDI KFSKR VKVT+QH +DCKRLL LMGVP +EAP EAEAQCA L K G+VY A
Sbjct: 115 SGNQEDINKFSKRLVKVTRQHGEDCKRLLGLMGVPYIEAPCEAEAQCAELVKGGKVYGTA 174
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 185
+EDMD LTFG LRH+ +RK+P+ EF + ++L L L D+FIDLCIL GCDYC+
Sbjct: 175 TEDMDGLTFGTNVLLRHMTYSEARKMPIKEFNLERVLSGLELNRDEFIDLCILLGCDYCE 234
Query: 186 SIRGIGGQTALKLIRQHGSIETILENINRE-----RYQIPEDWPYQEARRLFKEPEVVTD 240
SIRGIG + A++LI+QH SIE I+ +I+ + +Y IPEDWP++EAR+LF EPE VT
Sbjct: 235 SIRGIGPKRAIELIKQHKSIEKIISSIDTKACCDTKYTIPEDWPFKEARQLFLEPE-VTP 293
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
++Q+KW+ PDE+GL+ FL ENGF+ +R+ +K+ +N ++QGRL+SFFK V +
Sbjct: 294 ASEIQLKWTDPDEDGLVKFLCEENGFSEERIRNGAKKLLKGRNTTTQGRLDSFFKVVPSE 353
Query: 301 SAPIKRK 307
KRK
Sbjct: 354 GPSAKRK 360
>gi|323457006|gb|EGB12872.1| hypothetical protein AURANDRAFT_19112 [Aureococcus anophagefferens]
Length = 396
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 211/321 (65%), Gaps = 16/321 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN GE TSH+QGMF RTIRLL+AG++P+YVFDG+PP++K ELAKR +KR +A L
Sbjct: 58 VLTNAEGEQTSHIQGMFNRTIRLLQAGVRPVYVFDGKPPNMKGGELAKRTAKRQEAEAAL 117
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A E + E I K+S KV+++ DD K+LL+LMGVPVV+AP EAEAQCA L + G+
Sbjct: 118 KKATENDDAEGISKYSALLTKVSRKDCDDVKQLLRLMGVPVVDAPCEAEAQCAELVRGGK 177
Query: 121 VYAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
+AV +EDMD+LTFG+ R LR++ S+ V+E A +LE L L+ +F+D CIL
Sbjct: 178 AHAVGTEDMDALTFGSTRQLRNMTFTKKSKDDKVLEITHAAVLEGLGLSNAEFVDFCILC 237
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENI--NRERYQIPEDW----------PYQE 227
GCDY +IRG+G +TALKL+++HGSIE IL ++R +P++W Y
Sbjct: 238 GCDYTSTIRGVGPKTALKLVKEHGSIEAILAKGLKAKQRGDVPDEWDDADDGPFVPAYVG 297
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
AR LF E VT +++ W PDE GL FLV GF RV A++++ +A+ + +Q
Sbjct: 298 ARNLFNNHE-VTPCGDVELSWGKPDEAGLRAFLVERMGFGEQRVEGALKRLTSAQGQRTQ 356
Query: 288 GRLESFFK--PVANTSAPIKR 306
R++SFFK P +AP KR
Sbjct: 357 RRMDSFFKVLPPKPGAAPKKR 377
>gi|347601761|gb|AEP16246.1| flap endonuclease 1 [Emiliania huxleyi virus 208]
Length = 358
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 210/312 (67%), Gaps = 13/312 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L GEVTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+
Sbjct: 54 LAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQA---LS 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + ++EK KR+V+ T++H+++ K++L LMG+PVV++P EAEA CAA K+G+
Sbjct: 111 ELKLTDDATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQSPCEAEATCAAYVKTGKA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGC
Sbjct: 171 YATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEP 235
DY +I+GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF P
Sbjct: 231 DYTKTIKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNP 290
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
EV +E + W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK
Sbjct: 291 EVDITQE---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK 347
Query: 296 PVANTSAPIKRK 307
V T KRK
Sbjct: 348 -VKQTPVGQKRK 358
>gi|73852488|ref|YP_293772.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|72415204|emb|CAI65441.1| putative endonuclease [Emiliania huxleyi virus 86]
gi|347481843|gb|AEO97829.1| flap endonuclease-1 [Emiliania huxleyi virus 84]
gi|347600467|gb|AEP14954.1| endonuclease [Emiliania huxleyi virus 88]
Length = 358
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 143/307 (46%), Positives = 209/307 (68%), Gaps = 13/307 (4%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
GEVTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+E
Sbjct: 59 GEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQA---LSELKLT 115
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
+ ++EK KR+V+ T++H+++ K++L LMG+PVV+AP EAEA CAA K+G+ YA A+
Sbjct: 116 DDATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKAYATAT 175
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGCDY +
Sbjct: 176 EDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGCDYTKT 235
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEPEVVTD 240
I+GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF P+V
Sbjct: 236 IKGIGPTRAYQLIQEHSTIENVLDVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNPDVDIT 295
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
+E + W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK V T
Sbjct: 296 QE---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK-VKQT 351
Query: 301 SAPIKRK 307
KRK
Sbjct: 352 PVGQKRK 358
>gi|68062082|ref|XP_673044.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56490604|emb|CAI01886.1| hypothetical protein PB300433.00.0 [Plasmodium berghei]
Length = 375
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/314 (45%), Positives = 209/314 (66%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LMNESGETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLI 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K
Sbjct: 115 KAKEEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L + S R + E + ++L+ L LTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQ 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F +P+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL
Sbjct: 295 SFIKPKVL-EKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DTFFTTCTKKSTKL 367
>gi|347482295|gb|AEO98236.1| flap endonuclease-1 [Emiliania huxleyi virus 203]
gi|347601360|gb|AEP15846.1| flap structure-specific endonuclease 1 [Emiliania huxleyi virus
207]
gi|357972633|gb|AET97906.1| flap endonuclease-1 [Emiliania huxleyi virus 201]
Length = 358
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 209/312 (66%), Gaps = 13/312 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L GEVTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A +L
Sbjct: 54 LAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAQALSELK 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A ++EK KR+V+ T++H+++ K++L LMG+PV++AP EAEA CAA K+G+
Sbjct: 114 LTDDA---TEVEKQEKRSVRATREHSEEVKKMLTLMGIPVIQAPCEAEATCAAYVKTGKA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGC
Sbjct: 171 YATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEP 235
DY +I+GIG A +LI++H +IE +L + ++ + +P+D+P + R LF P
Sbjct: 231 DYTKTIKGIGPTRAYQLIQEHSTIENVLGVLKKKHGEEQFSTMVPDDYPIEAVRDLFNNP 290
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
EV +E + W+ + + LI FLV E F++DRV K ++I AAK K +Q R+ FFK
Sbjct: 291 EVDITQE---LTWNTINRDALIAFLVEEKKFSADRVNKGCDRILAAKAKGTQHRINHFFK 347
Query: 296 PVANTSAPIKRK 307
V T KRK
Sbjct: 348 -VKQTPVGQKRK 358
>gi|283481241|emb|CAZ69357.1| putative endonuclease [Emiliania huxleyi virus 99B1]
Length = 358
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 210/312 (67%), Gaps = 13/312 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L GEVTSHL G+F RTIRL+EAG+KP+YVFDG+PP LKK+EL KR ++A A L+
Sbjct: 54 LAASEGEVTSHLTGIFYRTIRLIEAGIKPVYVFDGKPPVLKKKELDKRNERQAHA---LS 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
E + ++EK KR+V+ T++H+++ K++L LMG+PVV+AP EAEA CAA K+G+
Sbjct: 111 ELKLTDDATEVEKQEKRSVRATREHSEEVKKMLTLMGIPVVQAPCEAEATCAAYVKTGKA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMDSLTFG+ +RH+ +K P +E+ + IL ++ +TMDQFI++CILSGC
Sbjct: 171 YATATEDMDSLTFGSTYVIRHINSTDQKKQPTVEYSLPNILNDMGITMDQFIEICILSGC 230
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ------IPEDWPYQEARRLFKEP 235
DY +I+GIG A +LI++H +IE +L+ + ++ + +P+D+P + R LF P
Sbjct: 231 DYTKTIKGIGPTRAYQLIQEHSTIEIVLDVLKKKHGEAQFSTMVPDDYPIEAVRDLFNNP 290
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
+V +E + W+ + + LI FLV + F++DRV K ++I AAK K +Q R+ FFK
Sbjct: 291 DVDITQE---LTWNTINRDALIAFLVEDKKFSADRVNKGCDRILAAKAKGTQHRINHFFK 347
Query: 296 PVANTSAPIKRK 307
V T KRK
Sbjct: 348 -VKQTPVGQKRK 358
>gi|224006087|ref|XP_002292004.1| exonuclease [Thalassiosira pseudonana CCMP1335]
gi|317376197|sp|B8C6S5.1|FEN1_THAPS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220972523|gb|EED90855.1| exonuclease [Thalassiosira pseudonana CCMP1335]
Length = 390
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 160/301 (53%), Positives = 211/301 (70%), Gaps = 5/301 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN GE TSH+QG+F RTIR + G++P+YVFDG+PP K EL KR KR A L
Sbjct: 59 MLTNADGETTSHIQGIFNRTIRFISEGIRPVYVFDGKPPQFKSGELLKRREKRLKAEQAL 118
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E+GN E+ +K SKR V+ + N+DC +LL LMGVPV+ AP EAEAQ AAL +SG+
Sbjct: 119 KAAEESGNIEEQDKQSKRLVRAGTKENEDCIKLLTLMGVPVIRAPCEAEAQAAALARSGK 178
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTF +P +R + ++ K V + K +E L +T DQF+DLCIL G
Sbjct: 179 VYAAATEDMDALTFRSPVMVRKMTFANASKSDVQQIFYDKAIEGLEITHDQFVDLCILLG 238
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYCD+I+GIG +TALKLIR+H +IETIL+++NRE+Y +P+ Y EARRLF EV+ D
Sbjct: 239 CDYCDTIKGIGPKTALKLIREHKNIETILKHLNREKYVVPD--IYVEARRLFNHHEVLPD 296
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS--QGRLESFFKPVA 298
E +++KW+ E L +FLV E GFN DRV +IEK++ A S+ Q R++SFFK A
Sbjct: 297 NE-IELKWTECQPEPLKSFLVDEMGFNPDRVQASIEKLQKAFKASAKPQSRMDSFFKVKA 355
Query: 299 N 299
N
Sbjct: 356 N 356
>gi|83286314|ref|XP_730108.1| Flap endonuclease-1 [Plasmodium yoelii yoelii 17XNL]
gi|74882336|sp|Q7RME3.1|FEN1_PLAYO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|23489735|gb|EAA21673.1| flap endonuclease-1-related [Plasmodium yoelii yoelii]
Length = 480
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 207/314 (65%), Gaps = 12/314 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LMNESGETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLI 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A GN E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K
Sbjct: 115 KAKAEGNLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-----------MDPSSRKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L + S R + E + ++L+ L LTMD
Sbjct: 175 HATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMD 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+
Sbjct: 235 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQ 294
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL
Sbjct: 295 SFINPKVL-EKSEVKIDWCEPKIEELKTFLIKEHNFNEVRVTNYITRLLKARKVTTQRRL 353
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 354 DTFFTTCTKKSTKL 367
>gi|171679661|ref|XP_001904777.1| hypothetical protein [Podospora anserina S mat+]
gi|170939456|emb|CAP64684.1| unnamed protein product [Podospora anserina S mat+]
Length = 379
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/298 (47%), Positives = 197/298 (66%), Gaps = 20/298 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE G+ TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L
Sbjct: 53 LMNEDGQTTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAHEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E++EKFS+RTV+VT++HN +C++LLKLMG+P + AP+EAEAQCA L ++G+V
Sbjct: 113 EAKETGTAEEVEKFSRRTVRVTREHNAECQKLLKLMGIPYIVAPTEAEAQCAVLARAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+L F +P LRHL RK P+ E VAK+LE L +
Sbjct: 173 YAAASEDMDTLCFDSPILLRHLTFSEQRKEPIQEIHVAKVLEGLGM-------------- 218
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
D I + TALKLIR+H ++E +++ + + +Y IPEDWP+++AR LF P+V
Sbjct: 219 --LDPIPKVDPSTALKLIREHKTLEGVVKFMKEDPKSKYVIPEDWPFEDARDLFFNPDVR 276
Query: 239 TDEEQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
++ L KW PD EGL+ FLV E GF+ DRV A +++ S Q R+E FFK
Sbjct: 277 QADDPLCDFKWEKPDIEGLVQFLVKEKGFSEDRVRGAAARLEKNMKSSQQSRIEGFFK 334
>gi|298706804|emb|CBJ29727.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 476
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 133/232 (57%), Positives = 177/232 (76%), Gaps = 3/232 (1%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSH+QGMF RTIR+L G+KP Y+FDG+PP LK ELAKR +KRA A +L
Sbjct: 56 MLTNEAGEVTSHIQGMFNRTIRMLSKGVKPCYIFDGKPPQLKGGELAKRTAKRAKAEAEL 115
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A EA +K D++KFSKR V+VT+ HN+DCK+LL LMGVPVV APSEAEAQCAAL + G
Sbjct: 116 KVATEADDKNDVDKFSKRLVRVTRDHNEDCKKLLSLMGVPVVTAPSEAEAQCAALAREGV 175
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY A+EDMD+LTF P+ LR + S + P++E + K+L+ L L+ ++F+DLC+L G
Sbjct: 176 VYGTATEDMDALTFQTPKLLRRMTFSGSNQ-PILEVDYQKLLQGLELSHEKFVDLCVLCG 234
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARR 230
CDY SI+GIG + AL L+RQHG+IE I+++++ ++Y +P+DW P + A R
Sbjct: 235 CDYTGSIKGIGPKKALALVRQHGTIEEIIKHLDAKKYPVPDDWLEPAERAER 286
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 215 ERYQIPEDWP--YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 272
E Q +D P Y++AR LF +PEV E ++KW+ PDE GLI FLV E GFN++RV
Sbjct: 366 ESEQEMDDTPPMYRQARGLFLKPEVEPAGE-YKLKWTDPDEPGLIKFLVEEKGFNAERVA 424
Query: 273 KAIEKIKAAKNKSSQGRLESFFKPVAN 299
I K+K A+ SQ R++SFF + N
Sbjct: 425 SGIVKLKGARKNVSQKRMDSFFSVIPN 451
>gi|123335114|ref|XP_001294157.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121871805|gb|EAX81227.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 335
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 208/295 (70%), Gaps = 5/295 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G TSHLQG+ +RT+RL+E+G+KP+YVFDG+PP++K ELAKR +R +A +L
Sbjct: 22 LVDSEGNTTSHLQGVLSRTVRLIESGVKPVYVFDGKPPEMKGAELAKRLERREEAQKELE 81
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E+G++E I+KFS+RTV + K ++CK+LL+ +GVP V+AP EAEA+CAAL K+G V
Sbjct: 82 KAIESGDQEAIDKFSRRTVHLDKTQVEECKQLLECLGVPYVDAPCEAEAECAALNKAGLV 141
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
A+A+EDMDSL F P+ +RHL ++ +++ + ++E+ LT ++F+D CIL GC
Sbjct: 142 DAMATEDMDSLAFATPQLIRHL-SYGAKGDDLLQIDYKIMMEKSGLTREEFVDFCILMGC 200
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD+I+GIG + A +LI+++ +IETI++N+++ +Y++PED+ Y AR LF EV TD
Sbjct: 201 DYCDTIKGIGKKHAYELIKKYHNIETIIKNLDK-KYELPEDFDYVRARELFFNHEVTTD- 258
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
+ + W PD E + FL F RV A KI A+ K +Q R+++FFKP
Sbjct: 259 --VNLTWKKPDVEKVKEFLCGSRMFAESRVEAACAKIVKARGKGTQMRMDNFFKP 311
>gi|303388735|ref|XP_003072601.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
gi|303301742|gb|ADM11241.1| flap endonuclease-1 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 197/284 (69%), Gaps = 3/284 (1%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSHL G F RTIR++E G+ P+YVFDG PP++K +EL KR +RA A + EA E G+K
Sbjct: 60 TSHLVGFFYRTIRMVELGIIPVYVFDGVPPEVKMKELEKRSERRAAADKEYKEASEMGDK 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+ +E + KR KVT H ++CKRLL LMG+P APSEAEA CA LCK VY VA+EDM
Sbjct: 120 KLMEMYDKRKTKVTGMHVEECKRLLGLMGIPFETAPSEAEAYCAFLCKKKAVYGVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+LTFG+P LR+ SRK+P++E+ + ++LE L+L ++FIDLCIL GCDYC +++G
Sbjct: 180 DALTFGSPVVLRNFSGSQSRKLPIVEYNLPELLESLSLEHEEFIDLCILLGCDYCGTLKG 239
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
IG + AL LI++HG IE IL++ N E +P+ W Y++A+R+F + D + I W
Sbjct: 240 IGPKRALGLIKKHGGIEKILQSENLE---VPDGWRYRDAQRIFGSLPEIGDAREFNISWG 296
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
+ D G+++FLV E GF+ +RV + IEK+ ++ K QGRL+ F
Sbjct: 297 SIDRNGIVSFLVEEKGFDLERVNRGIEKLVNSRKKGVQGRLDGF 340
>gi|402468038|gb|EJW03248.1| hypothetical protein EDEG_00228 [Edhazardia aedis USNM 41457]
Length = 362
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 206/309 (66%), Gaps = 13/309 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK-KQELAKRYSKRADATDDL 60
LT ++G+ TSHL G F RTIR++ +G+KP++VFDG PP+LK EL KR KR A +
Sbjct: 53 LTTDSGDTTSHLIGTFYRTIRIVTSGIKPLFVFDGLPPELKLSHELEKRKEKRDAAAKEY 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+E G+KE IEKF KR VKVTK+H DDCK+LL LM VP V APSEAEA A LC G
Sbjct: 113 EMALETGDKEQIEKFDKRKVKVTKKHVDDCKKLLDLMKVPYVVAPSEAEAYAAYLCIKGV 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V AVA+EDMD+LTFGAP LR+L ++K+P++E+ + +IL+EL + +QFID+CI+ G
Sbjct: 173 VDAVATEDMDALTFGAPILLRNLNAAENKKLPIVEYNLKEILKELKINHNQFIDVCIMLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILE---------NINRERYQIPEDWPYQEARRL 231
CDY +RG G + A ++I +H IETILE N + + W ++EAR +
Sbjct: 233 CDYVKPLRGFGPKRAYEMILKHKDIETILEKEKIKSLESTKNENSSEADDIWNFEEARII 292
Query: 232 FKEPEVVTDE--EQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
F E V+DE E++ +I + + ++ FLV ENGF+ +RV K +E+ K+AK K Q
Sbjct: 293 FNELPHVSDEIIEKMPEIDFDKIVVDDVVKFLVHENGFSEERVLKGLERFKSAKEKKKQV 352
Query: 289 RLESFFKPV 297
R+ESFFK V
Sbjct: 353 RIESFFKKV 361
>gi|429962587|gb|ELA42131.1| hypothetical protein VICG_00772 [Vittaforma corneae ATCC 50505]
Length = 344
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 196/286 (68%), Gaps = 3/286 (1%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSHL GMF RTIR++E+G+ P+YVFDG+ P +K EL KR +R A L +A +K
Sbjct: 60 TSHLVGMFYRTIRIIESGIIPVYVFDGKAPPIKAIELQKRNERRLKAEKMLEQAKLEEDK 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
++++K KR VKV + H DDCKRL +LMGVP V A SE+EA C+ LCK G V AVA+EDM
Sbjct: 120 KEMDKHEKRKVKVEESHVDDCKRLFRLMGVPFVTAESESEAYCSLLCKRGVVKAVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+L FGAP LR++ S+ + + E+ + IL+EL LTM FIDLCIL GCDYCD+I+G
Sbjct: 180 DALCFGAPILLRNMNASQSKNLDIDEYNLGTILKELELTMGSFIDLCILMGCDYCDTIKG 239
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
+G + A LI+++G IE+I+E+ E ++P+++ Y+ AR +F E V + E +I +
Sbjct: 240 VGHKRAYDLIKKYGCIESIIES---ETPEVPDNFDYKAARLIFNELSSVGEAENFEIMYD 296
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
D+EGL+ FLV E GF+ RVT IEKI + + +Q +L++FFK
Sbjct: 297 QLDKEGLVQFLVKEKGFDEVRVTNGIEKIIKSSKRGNQTKLDAFFK 342
>gi|68074223|ref|XP_679026.1| flap exonuclease [Plasmodium berghei strain ANKA]
gi|74991237|sp|Q4Z015.1|FEN1_PLABA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|56499663|emb|CAH96377.1| flap exonuclease, putative [Plasmodium berghei]
Length = 478
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 208/314 (66%), Gaps = 13/314 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSH+ G+ +RTI+L+E G+KPIYVFDG PP+LK EL KR KR A + L
Sbjct: 55 LMNESGETTSHISGLMSRTIKLMENGLKPIYVFDGAPPELKGSELEKRGEKRQKAEELLI 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E N E+I+K S RTV+VTK+ N++ K+LL LMG+PV+E+P EAEAQCA L K
Sbjct: 115 KAKEE-NLEEIKKQSGRTVRVTKKQNEEAKKLLTLMGIPVIESPCEAEAQCAFLTKYEMA 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS-----------RKIPVMEFEVAKILEELNLTMD 170
+A A+ED D+L FG +R+L +S R + E + ++L+ L LTMD
Sbjct: 174 HATATEDADALVFGTKILIRNLNANASSNKNKNKNSSKRGYILTEINLEQVLKGLKLTMD 233
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
+FID CIL GCDYCD+I+GIG +TA LI+++ IE I++NI++ +YQ+P ++ Y EAR+
Sbjct: 234 EFIDFCILCGCDYCDTIKGIGSKTAYNLIKEYNCIENIIKNIDQNKYQVPANFKYVEARQ 293
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F +P+V+ ++ +++I W P E L FL+ E+ FN RVT I ++ A+ ++Q RL
Sbjct: 294 SFIKPKVL-EKSEVKIDWCEPKIEELKKFLIKEHNFNEVRVTNYITRLLKARKVTTQRRL 352
Query: 291 ESFFKPVANTSAPI 304
++FF S +
Sbjct: 353 DTFFTTCTKKSTKL 366
>gi|302415469|ref|XP_003005566.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
gi|261354982|gb|EEY17410.1| DNA-repair protein rad2 [Verticillium albo-atrum VaMs.102]
Length = 308
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 128/241 (53%), Positives = 173/241 (71%), Gaps = 3/241 (1%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L NE+GE TSHL GMF RT+R+++ G+KP+YVFDG PP LK ELAKR+ ++ +A + L
Sbjct: 53 LMNESGETTSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G EDIEKFS+RTV+VT++HN +C++LL+LMGVP + AP+EAEAQCA L K G+V
Sbjct: 113 EAKETGTAEDIEKFSRRTVRVTREHNAECQKLLRLMGVPFIIAPTEAEAQCAVLAKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD+LTF P LRHL RK P+ E + K++E L + +QF+DLCIL GC
Sbjct: 173 YAAASEDMDTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENIN---RERYQIPEDWPYQEARRLFKEPEVV 238
DY D + +G TALKLIR+H ++E +++ I + +Y +PEDWP++ R +P
Sbjct: 233 DYLDPVPKVGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFRRRARTVSQPRRA 292
Query: 239 T 239
T
Sbjct: 293 T 293
>gi|357601961|gb|EHJ63212.1| flap endonuclease-1 [Danaus plexippus]
Length = 266
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/242 (54%), Positives = 178/242 (73%), Gaps = 2/242 (0%)
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ I+KF++R VKVT+QH + ++LLKLMG+PVVEAP EAEAQCA L K G+VYAVA+
Sbjct: 6 GDTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVEAPCEAEAQCAELVKGGKVYAVAT 65
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMD+LTFGA LRHL +RK+PV EF + ++L L L +FIDLCIL GCDYC S
Sbjct: 66 EDMDALTFGANVLLRHLTFSEARKMPVQEFHLDQVLRGLELEQTEFIDLCILLGCDYCGS 125
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
I+GIG + A++LI+QH SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+ + +++
Sbjct: 126 IKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEAKDVEL 184
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 306
KWS PDEEGL+ FL + FN +RV +K+ A+ ++QGRL+ FFK ++ T P KR
Sbjct: 185 KWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTPNP-KR 243
Query: 307 KV 308
K
Sbjct: 244 KA 245
>gi|403358237|gb|EJY78757.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 967
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 137/304 (45%), Positives = 199/304 (65%), Gaps = 14/304 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +T HL GMF RTI+ LE+G+KPI+VFDG+PPDLK + L +R + A ++
Sbjct: 58 LRDSNGNLTGHLVGMFHRTIQFLESGIKPIWVFDGKPPDLKNRVLDQRKETKEKAVEEKK 117
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+E G+ E ++ + R+VKVT D K+LL+LMG PV++AP EAEAQCA L K G
Sbjct: 118 NRIEEGDMEGAKRMAGRSVKVTWDMMRDAKKLLRLMGCPVIDAPGEAEAQCAHLVKLGLA 177
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A ASEDMDSLTFG LR +S+K P+++ ++ ++LE + DQFIDLCIL GC
Sbjct: 178 FATASEDMDSLTFGTKVLLRGF---NSKKEPIIQIDLEEVLEGFMMNHDQFIDLCILCGC 234
Query: 182 DYCDSIRGIGGQTALKLIRQHGS-IETILENINRE--------RYQIPEDWPYQEARRLF 232
DY SI GIG A + + +HG IE +++ + E +Y IPE++ ++EAR LF
Sbjct: 235 DYTTSITGIGPIKAYQYLSEHGGIIENVIKKVEYENQKPWKKKKYHIPENFLFKEARELF 294
Query: 233 KEPEVVTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
K P + D+ +L+ IKW+ PDEEGL FL+++ GF+ +V ++K+K + K++QGRL
Sbjct: 295 KNPRIEKDQSKLEYKIKWTKPDEEGLKEFLITQKGFSDVKVDSGLKKLKGCQGKTNQGRL 354
Query: 291 ESFF 294
+ FF
Sbjct: 355 DCFF 358
>gi|385302733|gb|EIF46850.1| structure-specific endonuclease rad27 [Dekkera bruxellensis
AWRI1499]
Length = 305
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 200/287 (69%), Gaps = 4/287 (1%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 82
++ G+KP YVFDG+PP +K EL KR +R DA + +A EAG ++++KF +RTV+V
Sbjct: 1 MVGYGIKPCYVFDGKPPVMKGGELEKRLKRRQDAEEKAXKAXEAGEAQELQKFQRRTVRV 60
Query: 83 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 142
T++ N++ K LL+LMG+P VEAP EAE+QCA L K+G VY ASEDMD+L + LR+
Sbjct: 61 TREQNEEAKHLLRLMGIPYVEAPCEAESQCAELAKAGNVYGAASEDMDTLCYQPTVLLRN 120
Query: 143 LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 202
+ SRK+ + ++++ ++L+ ++T+++F+D+CIL GCDYC++IRG+G TA KLIR++
Sbjct: 121 VTAAESRKLKIDQYDIKEVLKGFDMTIEEFVDMCILLGCDYCETIRGVGPVTATKLIRKY 180
Query: 203 GSIETILENINRE---RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINF 259
S+E I++ I ++ ++++P++WPY+EAR LF PEV E + +KW PD EGL+ F
Sbjct: 181 KSLEKIVDAIKQDPKSKFKVPDNWPYKEARELFLHPEVKPGSE-INLKWEEPDVEGLVQF 239
Query: 260 LVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKR 306
+V ENGF+ R+ K+K A +QGRL+ FFK + S+ KR
Sbjct: 240 MVKENGFSEQRIRDGAAKLKKALKGGTQGRLDGFFKVSGSVSSGKKR 286
>gi|146171182|ref|XP_001470841.1| flap endonuclease-1 [Tetrahymena thermophila]
gi|317376196|sp|A4VDN2.1|FEN1_TETTS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|146145019|gb|EDK31639.1| flap endonuclease-1 [Tetrahymena thermophila SB210]
Length = 384
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/303 (45%), Positives = 195/303 (64%), Gaps = 13/303 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT++ G T HL G+ RT+ L+E G+KP++VFDG+PP K ELA+R + +A +
Sbjct: 57 LTDKDGNKTGHLVGLLNRTVMLIENGLKPVWVFDGKPPQFKSGELARRQKAKDEAAEKQK 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ ++ K +R + +TK+ D +LL+L+GVPV+ AP EAEAQCAAL K+ +V
Sbjct: 117 TAIETGDMQEALKQEQRNLHITKEMKADAIKLLQLVGVPVILAPCEAEAQCAALAKAKKV 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A +EDMD+LTF P LR+L +S+K P+ E K+L+EL L+ ++F+DLCIL GC
Sbjct: 177 FATVTEDMDALTFATPFLLRNL---NSKKEPITEINYEKMLQELKLSHNEFVDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENI--------NRERYQIPEDWPYQEARRLFK 233
DY I G+G A KLI +H S+E +LE++ +++Y +P + Y AR LF
Sbjct: 234 DYLGRIEGVGPVNAFKLITEHKSLEKVLEHMEEVNKQSTKKQKYTVPSSYDYVSARDLFI 293
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK-NKSSQGRLES 292
PE VTD E +Q++W PD E L FLV E GF+ RVT +EK+ AK +K SQ RL
Sbjct: 294 NPE-VTDPETIQLEWKKPDVEELKKFLVEEKGFSEQRVTSQMEKVLNAKEHKGSQTRLND 352
Query: 293 FFK 295
FFK
Sbjct: 353 FFK 355
>gi|449685242|ref|XP_002159259.2| PREDICTED: flap endonuclease 1-like, partial [Hydra magnipapillata]
Length = 230
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 173/227 (76%), Gaps = 2/227 (0%)
Query: 46 LAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP 105
LAKR +R +A L +A E G++E+I+KFS+R VKVT QHN +CK LL LMGVP ++AP
Sbjct: 1 LAKRTERREEAQKLLDQATEQGDQENIDKFSRRLVKVTPQHNKECKELLDLMGVPYIDAP 60
Query: 106 SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL 165
EAEAQCA L K G+VYA+ SEDMDSLTFGA LRHL +RK+P+ EF +K+LEEL
Sbjct: 61 CEAEAQCAELVKGGKVYAMGSEDMDSLTFGANILLRHLTFSEARKMPIQEFHYSKVLEEL 120
Query: 166 NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI-NRERYQIPEDWP 224
LT +QF+DLCIL GCDYC SI+G+G TA+KLI++H +IE I++++ ++++Y IPE+W
Sbjct: 121 ELTKEQFVDLCILLGCDYCASIKGVGPVTAMKLIKEHRNIEGIIKHLQSKDKYTIPENWM 180
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 271
Y+++R LF EPE VT +Q+Q+KW PDEEGL+ ++V + GF D +
Sbjct: 181 YEDSRLLFLEPE-VTPADQVQLKWKEPDEEGLVEYMVKQKGFRFDII 226
>gi|403341860|gb|EJY70247.1| Flap endonuclease 1-1 [Oxytricha trifallax]
Length = 404
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 198/312 (63%), Gaps = 14/312 (4%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +T HL G+F RTI+ +E G+KPI+VFDG+PP+LK L +R + A + ++A
Sbjct: 63 GNLTGHLVGLFHRTIQFMENGVKPIWVFDGKPPELKSYVLDQRKENKEKAEETKQTMIDA 122
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ E ++ + R+++VT + +D K+LL+LMG PVVEAP EAEAQCA + K G YA AS
Sbjct: 123 GDLEGAKRMAGRSIRVTPEMMEDAKKLLRLMGTPVVEAPGEAEAQCAVIVKHGLAYATAS 182
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
EDMDSLTFG LR +S+K P+++ ++A++LE NL +QFIDLCIL GCDY +
Sbjct: 183 EDMDSLTFGTNVLLRGF---NSKKEPIIQIDLAQVLEGFNLNHEQFIDLCILCGCDYTTN 239
Query: 187 IRGIGGQTALKLIRQH-GSIETILENINRE--------RYQIPEDWPYQEARRLFKEPEV 237
I G+G A K I + G+IE ++ I +E +Y IPE + Y+EAR LFK P
Sbjct: 240 IPGVGPVKAFKFISEEGGTIENVISRIEKENDDPKKKKKYTIPETFYYKEARELFKVPSA 299
Query: 238 VTDEEQLQ--IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
++D +L+ IK++ PDE L FLV+ GF +V I+K+KA K++Q RL+ FFK
Sbjct: 300 ISDIAELEKIIKFNKPDEVALKEFLVTSKGFQEIKVENGIKKLKATAGKTNQARLDCFFK 359
Query: 296 PVANTSAPIKRK 307
++ + K
Sbjct: 360 GAGTKTSSTQSK 371
>gi|389740276|gb|EIM81467.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 528
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 125/218 (57%), Positives = 167/218 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PPDLK LAKR+ KR +A ++
Sbjct: 53 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPDLKAGVLAKRFEKREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTV+VT++HN +C+RLL+LMG+PVV APSEAEAQCA L + G+
Sbjct: 113 EEAKETGTAEDVDRFSRRTVRVTREHNAECQRLLRLMGIPVVVAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E ++K LE L + M QFIDLCIL G
Sbjct: 173 VYAAGSEDMDTLTFSAPTLFRHLTFSEAKKAPITEVTLSKALEGLGMKMPQFIDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ 218
CDY + I+G+G +TALKLIR+HG ++ +LE++ ++ +
Sbjct: 233 CDYLEPIKGVGPKTALKLIREHGGLKEVLEHLKEKQAE 270
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA+++F++P+V+ +E +++ W APD +GL+ FLV E GFN DRV K EK
Sbjct: 408 QIPEFWPWEEAKKVFQKPDVIPADE-VELDWKAPDVDGLVQFLVVEKGFNEDRVRKGAEK 466
Query: 278 IKAAKNKSSQGRLESFF--KPVANTSAPIKRK 307
+ N QGRL+ FF +P A S K K
Sbjct: 467 LSKFLNAKQQGRLDGFFTVQPKAKESPAPKGK 498
>gi|340506781|gb|EGR32852.1| hypothetical protein IMG5_068750 [Ichthyophthirius multifiliis]
Length = 348
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/282 (45%), Positives = 191/282 (67%), Gaps = 12/282 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT++ G T+HL G+F RT+ L+++G+KP ++FDG+PP+ K EL KR +A+A +
Sbjct: 57 LTDKDGNKTAHLVGLFNRTVMLIDSGIKPAWIFDGKPPEFKSGELTKRQKAKANALEKQK 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ G+ E+ K +R + +TK +D ++L+L+GVPV++AP EAEAQCAAL K+ +V
Sbjct: 117 AALDIGDMEEALKMEQRNLFITKDMKNDAIKMLQLLGVPVIQAPCEAEAQCAALTKAKKV 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A +EDMD+LTFG P LR L +S+K P++E + +L+EL LT +QF+DLCIL GC
Sbjct: 177 FATVTEDMDALTFGTPTLLRGL---NSKKEPIIEIDYNLMLQELELTQEQFVDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL--------ENINRERYQIPEDWPYQEARRLFK 233
DY I GIG TA KLI++H ++E ++ EN +++++IP ++ Y AR LF
Sbjct: 234 DYLVRIDGIGPITAYKLIKEHLTLENVIAYMEKANDENSKKQKFKIPSEYNYVGARDLFF 293
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
P V+ D E++++KW+ PD EGL FLV E GFN DRV +
Sbjct: 294 NP-VIEDPEKMELKWTKPDIEGLKQFLVQEKGFNEDRVMNQV 334
>gi|328874795|gb|EGG23160.1| XPG [Dictyostelium fasciculatum]
Length = 308
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/234 (52%), Positives = 162/234 (69%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSHLQG F RTI+ + G+KP++VFDG PP LK ELAKR +K+ +A ++L
Sbjct: 69 LMNSIGETTSHLQGTFYRTIKFMSNGIKPVFVFDGAPPTLKSGELAKRSAKKKEAKENLD 128
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+ KFSKRT T++ N++C +LL LMG+PVV AP EAEAQCA L K G+
Sbjct: 129 EAKETGTTEDVAKFSKRTTSATRKQNEECIKLLTLMGIPVVRAPCEAEAQCAELVKGGKA 188
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMDSL FG LR+L +K P+ EF+ K+L T DQFIDLCIL GC
Sbjct: 189 WASGSEDMDSLAFGTKILLRNLTASDQKKNPLWEFDHEKLLYGTGFTHDQFIDLCILLGC 248
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP 235
DYC+SIRGIG A +L+++H SIE ++++++ +Y +P +P+ EAR +EP
Sbjct: 249 DYCESIRGIGPVRAFELMQKHKSIEEVVKHLDPTKYPVPVPFPFDEAREPIQEP 302
>gi|403347702|gb|EJY73284.1| FEN-1 nuclease [Oxytricha trifallax]
Length = 392
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/308 (43%), Positives = 195/308 (63%), Gaps = 14/308 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
T++ G T+HL G+F R I+ + G+K I+VFDG+PP+LK + L KR R A D+
Sbjct: 49 FTDQQGNQTAHLIGLFNRNIQFAQHGIKAIWVFDGKPPELKSRTLEKRKENRDKAEDEKE 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G++ + K ++RTVKVTK +D KRL+K MG PVV AP EAEA CA L K G+
Sbjct: 109 EAQEDGDEFKMAKMAQRTVKVTKSMVEDAKRLVKAMGFPVVHAPGEAEAFCAYLVKEGKA 168
Query: 122 YAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
+A SEDMDSLTFG+P +R + M I +M+ E++K+L L LT ++F+DLCI+ G
Sbjct: 169 FATVSEDMDSLTFGSPFMIRGMSMAKQKAGIELMQIELSKVLFSLKLTYEEFVDLCIICG 228
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---------RYQIPEDWPYQEARRL 231
CDY +I GIG A K I ++ +IE +L+ I++E +Y IPED+PYQEAR L
Sbjct: 229 CDYTATITGIGAVKAYKFITEYRTIEKVLKAIDKEIFSSKGKKAKYIIPEDFPYQEAREL 288
Query: 232 FKEPEVVTDEEQL--QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK--AAKNKSSQ 287
F + ++L Q+KW+ P++E + FL+ E FN ++V ++K+ + +Q
Sbjct: 289 FLHQDYKEQLQELQDQLKWNKPNDEEIKEFLIKEKNFNEEKVDNGLKKLNKFSPTQGRTQ 348
Query: 288 GRLESFFK 295
RL+SFFK
Sbjct: 349 VRLDSFFK 356
>gi|302688649|ref|XP_003034004.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
gi|300107699|gb|EFI99101.1| hypothetical protein SCHCODRAFT_81803 [Schizophyllum commune H4-8]
Length = 452
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE+TSHL G+F RTIR++E G+KP YVFDG+PPDLKK L+KR+ KR +A +
Sbjct: 53 MLTNDAGEITSHLMGLFYRTIRIVENGIKPAYVFDGKPPDLKKGVLSKRFEKRDEAKEGE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G +++KFS+R VKVT++HN++C+RLLKLMG+P VEAPSEAEAQCA L + G+
Sbjct: 113 EEAKETGTAAEVDKFSRRQVKVTREHNEECRRLLKLMGIPYVEAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P++E + LE L++ + F+DLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILFRHLTVSEAKKQPILEINLKAALEGLDMDLSMFVDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + I+G+G ++ALKL+R+HG + ++E++
Sbjct: 233 CDYLEPIKGVGPKSALKLVREHGGLAGVVEHL 264
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 214 RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 273
R QIPE+WP++EA++LF P+V+ +E ++++W +PD +GL+ FLV+E GFN +RV K
Sbjct: 327 RGGVQIPEEWPWEEAKKLFLTPDVIPADE-VELEWKSPDVDGLVQFLVNEKGFNEERVRK 385
Query: 274 AIEKIKAAKNKSSQGRLESFF 294
EK+ N QGRL+ FF
Sbjct: 386 GAEKLAKFLNAKQQGRLDGFF 406
>gi|430812753|emb|CCJ29874.1| unnamed protein product [Pneumocystis jirovecii]
Length = 225
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 114/224 (50%), Positives = 166/224 (74%), Gaps = 1/224 (0%)
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ KFS+RTV++T++HN++CK+LLKLMG+P V+AP EAEAQCAAL K+G+VYA ASEDMD
Sbjct: 1 MNKFSRRTVRMTREHNEECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKVYAAASEDMDI 60
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIG 191
L F P LRHL +K P+ E + K L+ELN+ ++QF+DLCIL GCDYC+ I+GIG
Sbjct: 61 LCFSTPILLRHLTFSEQKKEPITEVNLEKALKELNMPLEQFVDLCILLGCDYCEPIKGIG 120
Query: 192 GQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAP 251
+ AL+LIR++ S++ + ++ +Y IPE+WPY++AR LF +P+ +TD E ++KW +P
Sbjct: 121 PKRALELIREYKSLDAFINFADKSKYHIPENWPYKDARELFLKPD-ITDPETFELKWESP 179
Query: 252 DEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
D EGL++FLV E GF+ +RV I +++ + Q RL+ +FK
Sbjct: 180 DAEGLLDFLVKEKGFSEERVNNGIVRLEKTLKSAQQIRLDGYFK 223
>gi|403222552|dbj|BAM40684.1| 5'-3' exonuclease [Theileria orientalis strain Shintoku]
Length = 824
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/307 (44%), Positives = 196/307 (63%), Gaps = 14/307 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GE TSHL GM +R +LLE G+KP++VFD +PP+LK + L KR +R +A+ L
Sbjct: 55 LVNASGESTSHLYGMMSRCSKLLECGIKPVFVFDSKPPELKLKTLEKRRQRREEASTSLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ G+KE I+K RTVKVTK+ ND K+LL+LMGVPV+EAP EAEAQCA L ++
Sbjct: 115 QAIAEGDKESIKKLMGRTVKVTKEMNDSAKKLLRLMGVPVIEAPEEAEAQCAYLVRNSLC 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
VASED D+L FG LR++ S++KI ++ ++ K L+ L+LT +QF+D CIL GC
Sbjct: 175 RFVASEDTDTLAFGGGYLLRNVTASSNKKI--VKVDLQKALKGLDLTFEQFVDFCILCGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD++ G+G +TA L+++H S+E I+ + Y ++EA+ F P+ V D
Sbjct: 233 DYCDTLEGVGPKTAYTLVKRHASLEEIV-STKGGNYD-----DFREAKEYFMAPK-VNDF 285
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+Q +K D E L +FLV+EN F +RV K +EK+ + K Q L SF T+
Sbjct: 286 DQASVKMGTLDPEALTDFLVNENNFAKERVDKFVEKLLKFRGKKVQTSLLSFL-----TA 340
Query: 302 APIKRKV 308
P K ++
Sbjct: 341 QPAKTQL 347
>gi|392575628|gb|EIW68761.1| hypothetical protein TREMEDRAFT_69192 [Tremella mesenterica DSM
1558]
Length = 437
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/209 (55%), Positives = 161/209 (77%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE+G+VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A +
Sbjct: 53 MLMNESGDVTSHLMGFFYRTIRMVDQGIKPCYIFDGKPPELKGGVLAKRFARREEAKEGE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G EDI+K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+
Sbjct: 113 EEAKETGTVEDIDKLARRQVRVTREHNEECKKLLALMGIPVVTAPGEAEAQCAELARAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF P LRHL ++K+P+ E + +LEEL +TMDQFI+LCIL G
Sbjct: 173 VYAAGSEDMDTLTFSTPILLRHLTFSEAKKMPISEIHLNIVLEELGMTMDQFIELCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETIL 209
CDY + +GIG +TALKL+R+HGS+ ++
Sbjct: 233 CDYLEPCKGIGPKTALKLLREHGSLAAVV 261
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA+RLF++P+VV +E L++ W APD EGL+ FL + GFN DRV K
Sbjct: 330 QIPEYWPWEEAKRLFQQPDVVKGDE-LELDWKAPDVEGLVQFLCRDKGFNEDRVRAGAAK 388
Query: 278 IKAAKNKSSQGRLESFF 294
+ QGRL+ FF
Sbjct: 389 LAKMLAAKQQGRLDGFF 405
>gi|430813459|emb|CCJ29208.1| unnamed protein product [Pneumocystis jirovecii]
Length = 278
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 158/216 (73%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE TSHL G+F RT+R+ + G++P YVFDG PP LK ELAKR +R A
Sbjct: 54 LMNKTGETTSHLMGIFYRTLRMCDNGIRPCYVFDGTPPKLKSGELAKRSERREKAAKSYL 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA EA + ED+ KFS+RTV++T++HN++CK+LLKLMG+P V+AP EAEAQCAAL K+G+V
Sbjct: 114 EAKEADSIEDMNKFSRRTVRMTREHNEECKKLLKLMGIPYVDAPCEAEAQCAALAKAGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA ASEDMD L F P LRHL +K P+ E + K L+ELN+ ++QF+DLCIL GC
Sbjct: 174 YAAASEDMDILCFSTPILLRHLTFSEQKKEPITEVNLEKALKELNMPLEQFVDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERY 217
DYC+ I+GIG + AL+LIR++ S++ + ++ +Y
Sbjct: 234 DYCEPIKGIGPKRALELIREYKSLDAFINFADKSKY 269
>gi|145514173|ref|XP_001442997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124467070|sp|A0CXT3.1|FEN11_PARTE RecName: Full=Flap endonuclease 1-1; Short=FEN-1-1; AltName:
Full=Flap structure-specific endonuclease 1-1
gi|124410358|emb|CAK75600.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/313 (42%), Positives = 189/313 (60%), Gaps = 15/313 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT++ G T HL G+F RT++ LE G+KP++VFDG+PP LK ELA+R + +A
Sbjct: 57 LTDKDGNRTGHLVGLFNRTLQFLENGIKPVWVFDGKPPLLKSGELARRKKLKEEAQVKTE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ + +RT ++ +D ++LKLMG PV+ AP EAEAQCA LC++G++
Sbjct: 117 LALEQGDMQQALLQHQRTTTISSVMKEDAIKMLKLMGCPVIIAPCEAEAQCAELCRAGKI 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTF P LR +++K P+ E +++EL +T +QF+DLCIL GC
Sbjct: 177 YATATEDMDALTFRTPVLLRGF---NTKKEPIYEIIYDDMMKELEITYEQFVDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILEN---INRER--------YQIPEDWPYQEARR 230
DY + I GIG TA KLI++ SIE ILE+ +N ER Y +P + YQ++R
Sbjct: 234 DYTEKIEGIGPGTAYKLIKEFKSIEGILEHVQKVNAEREKNKQNPKYTVPTKFLYQDSRE 293
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
LF P +V E++Q+ W+ PD E L FLV E GF R+ +++I Q RL
Sbjct: 294 LFITP-LVQKGEEIQLTWNKPDVENLKKFLVEEKGFAESRIDNGLKRIAKKDTTGFQSRL 352
Query: 291 ESFFKPVANTSAP 303
E+FF P
Sbjct: 353 ENFFGKTTKIIHP 365
>gi|308159723|gb|EFO62244.1| Flap structure-specific endonuclease [Giardia lamblia P15]
Length = 361
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 191/308 (62%), Gaps = 3/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GEVTSHL G+ + IR+ EAG+KPI+VFDG+PP+ K+ EL KR R A +
Sbjct: 54 LANSSGEVTSHLVGLLAKVIRMAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQ 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E ++ S+RTVKVT+QH +RLL ++G+P + A EAEAQC A+ K
Sbjct: 114 KAEEEGNLERAKQLSRRTVKVTQQHCKQAERLLDVLGIPYIIAAGEAEAQCVAMAKERLC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
VAS D+D L FG+P +R+L R+I ME + +L+EL + D+F+DLCIL GC
Sbjct: 174 EGVASSDLDVLAFGSPCLIRNLAQGGDREI--MEINLNIVLKELGFSYDEFLDLCILCGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +S+ GIG +TA KLI +H SIE +L + + +WPY AR LFK PE++ +
Sbjct: 232 DYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRARELFKNPEIIDPK 291
Query: 242 E-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E + +KW + + FLV E F+ + K ++K+ AA+ + Q ++SFF ++
Sbjct: 292 EIKKTLKWKPVNRSEAMQFLVEEMEFDREATEKKLDKLVAARKRPKQCTIDSFFSARSSD 351
Query: 301 SAPIKRKV 308
S IK KV
Sbjct: 352 SEVIKTKV 359
>gi|58266500|ref|XP_570406.1| flap endonuclease [Cryptococcus neoformans var. neoformans JEC21]
gi|134111280|ref|XP_775782.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818103|sp|P0CS61.1|FEN1_CRYNB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|338818104|sp|P0CS60.1|FEN1_CRYNJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|50258446|gb|EAL21135.1| hypothetical protein CNBD5110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226639|gb|AAW43099.1| flap endonuclease, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 453
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE+G+VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A +
Sbjct: 53 MLMNESGDVTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+
Sbjct: 113 EEAKETGTAEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF +P LRHL ++K+P+ E + L +L ++MDQFI+LCIL G
Sbjct: 173 VYAAGSEDMDTLTFNSPILLRHLTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + +GIG +TALKL+R+HG++ ++E+I
Sbjct: 233 CDYLEPCKGIGPKTALKLMREHGTLGKVVEHI 264
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFMKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 278 IKAAKNKSSQGRLESFF 294
+ QGRL+ FF
Sbjct: 398 LSKMLAAKQQGRLDGFF 414
>gi|299743075|ref|XP_001835524.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
gi|298405488|gb|EAU86309.2| flap endonuclease-1 [Coprinopsis cinerea okayama7#130]
Length = 422
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ KR +A ++
Sbjct: 17 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFEKREEAKEEG 76
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVTKQHN++C++LL+LMGVP V APSEAEAQCA L + G+
Sbjct: 77 EEAKEIGTAEDVDRFSRRTVKVTKQHNEECQKLLRLMGVPCVIAPSEAEAQCAELARGGK 136
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + L+ L++ M QF+DLCIL G
Sbjct: 137 VYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG 196
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + I+G+G ++ALKLIR+ G ++ ++E++
Sbjct: 197 CDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 228
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 307 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 365
Query: 278 IKAAKNKSSQGRLESFF 294
+ N QGRL+ FF
Sbjct: 366 LTKFLNAKQQGRLDGFF 382
>gi|317374947|sp|A8NQC2.3|FEN1_COPC7 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 458
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 120/212 (56%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ KR +A ++
Sbjct: 53 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFEKREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVTKQHN++C++LL+LMGVP V APSEAEAQCA L + G+
Sbjct: 113 EEAKEIGTAEDVDRFSRRTVKVTKQHNEECQKLLRLMGVPCVIAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + L+ L++ M QF+DLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + I+G+G ++ALKLIR+ G ++ ++E++
Sbjct: 233 CDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 343 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 401
Query: 278 IKAAKNKSSQGRLESFF 294
+ N QGRL+ FF
Sbjct: 402 LTKFLNAKQQGRLDGFF 418
>gi|397621116|gb|EJK66115.1| hypothetical protein THAOC_12982 [Thalassiosira oceanica]
Length = 434
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 203/337 (60%), Gaps = 44/337 (13%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN GE TSH+QG+F RTI+ + G++P+YVFDG+PP K EL KR KR A + L
Sbjct: 57 VLTNADGETTSHIQGIFNRTIKFITEGIRPVYVFDGKPPSFKSGELLKRREKRQKAEEAL 116
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E+G+ E+ +K +KR V+ + N+D KRLL LMGVP++ AP EAEAQ AAL K+G+
Sbjct: 117 KAAEESGDVEEQDKHTKRLVRAGHKENEDIKRLLTLMGVPIINAPCEAEAQAAALAKAGK 176
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA A+EDMD+LTF P +R + + + + E +K L L L DQF+DLCIL G
Sbjct: 177 VYATATEDMDALTFQTPIQVRKMTFAKASQAEIQEVNYSKALIGLGLNHDQFVDLCILLG 236
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP---------------- 224
CDYCD+I+GIG +TALKLI++H +IETIL+ +NRE+Y +PE +
Sbjct: 237 CDYCDTIKGIGPKTALKLIKEHNNIETILKTLNREKYTVPESYEPNVAARKRQLEEDGDS 296
Query: 225 -------------------------YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINF 259
Y EAR+LF EV+ D E +++KW E L F
Sbjct: 297 DNEDATAKTGKPKTEGEEDEEILPVYVEARKLFNSHEVLPDSE-IELKWKDCQPEQLKAF 355
Query: 260 LVSENGFNSDRVTKAIEKIKAAK--NKSSQGRLESFF 294
LV E GFN +RV IEK++ A +K Q R++SFF
Sbjct: 356 LVDEMGFNPERVQSNIEKLQKAHKTSKKPQMRMDSFF 392
>gi|145514642|ref|XP_001443226.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124447858|sp|A0CYG2.1|FEN12_PARTE RecName: Full=Flap endonuclease 1-2; Short=FEN-1-2; AltName:
Full=Flap structure-specific endonuclease 1-2
gi|124410604|emb|CAK75829.1| unnamed protein product [Paramecium tetraurelia]
Length = 390
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 191/313 (61%), Gaps = 15/313 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT++ G T HL G+F RT++ LE G+KP++VFDG+PP LK ELA+R + +A
Sbjct: 57 LTDKEGNRTGHLVGLFNRTLQFLENGIKPVWVFDGKPPLLKSGELARRKKLKEEAKVKTE 116
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ + ++RT ++ +D ++L+LMG PV+ AP EAEAQCA LC++G++
Sbjct: 117 LALEQGDMQQALLQNQRTTTISSIMKEDAIKMLQLMGCPVIIAPCEAEAQCAELCRAGKI 176
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YA A+EDMD+LTF P LR +++K P+ E +++EL LT +QF+DLCIL GC
Sbjct: 177 YATATEDMDALTFRTPVLLRGF---NTKKEPIYEIIYDDMIKELELTYEQFVDLCILCGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILEN---INRER--------YQIPEDWPYQEARR 230
DY + I GIG TA KLI+++ SIE ILE+ +N ER Y +P + YQ++R
Sbjct: 234 DYTEKIEGIGPGTAYKLIKEYKSIEGILEHVQKVNAEREKNNQNPKYTVPSKFLYQDSRE 293
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
LF P +V ++LQ+ W+ PD + L FL+ E GF R+ +++I Q RL
Sbjct: 294 LFITP-LVQKGDELQLTWNKPDVDNLKKFLIEEKGFAESRIDNGLKRIAKKDPAGFQSRL 352
Query: 291 ESFFKPVANTSAP 303
E+FF P
Sbjct: 353 ENFFGKTTKIIHP 365
>gi|321257144|ref|XP_003193485.1| flap endonuclease [Cryptococcus gattii WM276]
gi|317459955|gb|ADV21698.1| flap endonuclease, putative [Cryptococcus gattii WM276]
Length = 453
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/212 (53%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE+G+VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A +
Sbjct: 53 MLMNESGDVTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+
Sbjct: 113 EEAKETGTAEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF +P LRHL ++K+P+ E + L +L ++MDQFI+LCIL G
Sbjct: 173 VYAAGSEDMDTLTFHSPILLRHLTFSEAKKMPISEIHLDVALRDLEMSMDQFIELCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + +GIG +TALKL+R+HG++ ++E+I
Sbjct: 233 CDYLEPCKGIGPKTALKLMREHGTLGKVVEHI 264
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFLKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 278 IKAAKNKSSQGRLESFF 294
+ QGRL+ FF
Sbjct: 398 LSKMLAAKQQGRLDGFF 414
>gi|159118360|ref|XP_001709399.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
gi|317374902|sp|A8B672.1|FEN1_GIAIC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157437515|gb|EDO81725.1| Flap structure-specific endonuclease [Giardia lamblia ATCC 50803]
Length = 361
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/308 (43%), Positives = 188/308 (61%), Gaps = 3/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GEVTSHL G+ + IRL EAG+KPI+VFDG+PP+ K+ EL KR R A +
Sbjct: 54 LANSSGEVTSHLVGLLAKVIRLAEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQ 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E GN E ++ S+RTVKVT+QH +RLL +G+P V A EAEAQC A+ K
Sbjct: 114 KAEEEGNLERAKQLSRRTVKVTQQHCKQAERLLDTLGIPYVVAAGEAEAQCVAMAKERVC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
VAS D+D L FG+P +R+L R+I +E + +L+EL + D+F+DLCIL GC
Sbjct: 174 EGVASSDLDVLAFGSPCLIRNLAQGGDREI--VEINLNTVLKELGFSYDEFLDLCILCGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +S+ GIG +TA KLI +H SIE +L + + +WPY AR LFK P V+ +
Sbjct: 232 DYANSLEGIGPKTAYKLIVKHRSIEEVLAADQGKLAEKALNWPYVRARELFKNPAVIDPK 291
Query: 242 E-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E + +KW + + FLV E F+ + K ++K+ AA+ K Q ++SFF P ++
Sbjct: 292 EIKKTLKWKPVNRGEAMQFLVEEMEFDRETTEKKLDKLVAARKKPKQCTIDSFFSPRSSN 351
Query: 301 SAPIKRKV 308
K KV
Sbjct: 352 PEVTKTKV 359
>gi|406699180|gb|EKD02391.1| flap endonuclease [Trichosporon asahii var. asahii CBS 8904]
Length = 344
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 194/336 (57%), Gaps = 60/336 (17%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 82
+++ G+KP YVFDG+PPDLK L +R+ +R +A + EA E G EDI++ S+R V+V
Sbjct: 1 MVDNGIKPCYVFDGKPPDLKSGVLKQRFGRREEAKEAEEEARETGTAEDIDRMSRRQVRV 60
Query: 83 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 142
TK+HN++CKRLL LMG+P V AP EAEAQCA L ++G+V+A SEDMD+LTF P LRH
Sbjct: 61 TKEHNEECKRLLGLMGIPCVTAPGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRH 120
Query: 143 LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 202
L ++K+P+ E ++ + L+ L++TMDQ LCIL GCDY + ++G+G +TALKL+R+H
Sbjct: 121 LTFSEAKKMPISEIKLEEALKGLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREH 177
Query: 203 GSIETILENINRERYQ-------------------------------------------- 218
GS+E ++E I + +
Sbjct: 178 GSLEKVVEFIKGKMAEKAAELAEQEIESEIESEEGEQFVVNSDGEEVPAPKVEKKKKPKK 237
Query: 219 -------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 271
IPE WP++EA++LF P+VV E+ Q PD EGL+ FLV E GF DRV
Sbjct: 238 RAAGGMQIPEYWPWEEAKKLFITPDVVKGEDLEQ-----PDVEGLVEFLVREKGFKEDRV 292
Query: 272 TKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
K+ QGRL+ FF T AP KRK
Sbjct: 293 RAGAAKLSKMLAAKQQGRLDGFFTVKPKTDAP-KRK 327
>gi|405120385|gb|AFR95156.1| flap endonuclease [Cryptococcus neoformans var. grubii H99]
Length = 453
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 163/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
ML NE+G+VTSHL G F RTIR+++ G+KP Y+FDG+PP+LK LAKR+++R +A +
Sbjct: 53 MLMNESGDVTSHLMGFFYRTIRMVDHGIKPCYIFDGKPPELKGSVLAKRFARREEAKEGE 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED++K ++R V+VT++HN++CK+LL LMG+PVV AP EAEAQCA L ++G+
Sbjct: 113 EEAKETGTAEDVDKLARRQVRVTREHNEECKKLLSLMGIPVVTAPGEAEAQCAELARAGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF +P LRHL ++++P+ E + L +L ++MDQFI+LCIL G
Sbjct: 173 VYAAGSEDMDTLTFNSPILLRHLTFSEAKRMPISEIHLDVALRDLEMSMDQFIELCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + +GIG +TALKL+R+HG++ ++E+I
Sbjct: 233 CDYLEPCKGIGPKTALKLMREHGTLGKVVEHI 264
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA++LF +P+VV ++ L ++W PD EGL+ FL + GFN DRV K
Sbjct: 339 QIPEFWPWEEAKQLFMKPDVVNGDD-LVLEWKQPDTEGLVEFLCRDKGFNEDRVRAGAAK 397
Query: 278 IKAAKNKSSQGRLESFF 294
+ QGRL+ FF
Sbjct: 398 LSKMLAAKQQGRLDGFF 414
>gi|388583596|gb|EIM23897.1| PIN domain-like protein [Wallemia sebi CBS 633.66]
Length = 433
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 154/208 (74%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GE TSHL G F RT+R+++ G+KP YVFDG+PPDLK L R+ KR DAT+
Sbjct: 54 LMSDTGETTSHLMGFFYRTLRMVDNGIKPCYVFDGKPPDLKSNVLKSRFEKREDATEQGE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G+ E I++ S+RTV+VTK+HN +C++LL+LMG+PVVEAPSEAEAQCA L + G+V
Sbjct: 114 EAKETGDAETIDRLSRRTVRVTKEHNMECRKLLRLMGIPVVEAPSEAEAQCAELVRGGKV 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMD+LTFGAP LRHL +K P+ + + + L L + +QF DLCIL GC
Sbjct: 174 WAAGSEDMDTLTFGAPILLRHLTFSEQKKEPISHYYLEEALTGLEMGREQFTDLCILLGC 233
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL 209
DY + ++G+G TALKLIR++GS++ I+
Sbjct: 234 DYLEPVKGVGPSTALKLIREYGSLDEIV 261
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 219 IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278
IP+ WPY+ AR LF +P V + +E +++ W PD +GL+ FL E GF DRV K +++
Sbjct: 325 IPDFWPYERARELFLKPNVQSADE-VELNWEHPDVDGLVQFLCHEKGFAEDRVRKGADRL 383
Query: 279 KAAKNKSSQGRLESFFK--PVANTSAPIKRK 307
N QGRL+SFF P AN +K
Sbjct: 384 IKMLNTKQQGRLDSFFSVIPKANDDKKTDKK 414
>gi|256064183|ref|XP_002570412.1| flap endonuclease-1 [Schistosoma mansoni]
Length = 241
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 110/205 (53%), Positives = 152/205 (74%), Gaps = 1/205 (0%)
Query: 97 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 156
MGVP V AP EAEAQCA L KSG+VYAV +EDMD+L FG P LRHL +RK+ + EF
Sbjct: 1 MGVPFVNAPGEAEAQCAVLAKSGKVYAVGTEDMDALAFGTPVLLRHLTFSEARKMAIQEF 60
Query: 157 EVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER 216
+ +LE L LTMDQFIDLCIL GCDY D+IRGIG + AL L+ ++ SI+ +L+NI++ +
Sbjct: 61 NLTSVLEGLGLTMDQFIDLCILLGCDYVDTIRGIGPKKALDLLHKYQSIDCVLKNIDKSK 120
Query: 217 YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 276
Y +P+DWPY++A++LF PE VTD +++KW+ PDEEGL+ FL ++GFN +R+ +
Sbjct: 121 YIVPDDWPYEDAKKLFLNPE-VTDPSSIELKWNEPDEEGLVEFLCHKHGFNEERIRNGAK 179
Query: 277 KIKAAKNKSSQGRLESFFKPVANTS 301
K+ AKN ++QGR+++FF V + S
Sbjct: 180 KLLKAKNTTTQGRIDNFFTCVPSKS 204
>gi|74612809|sp|Q76F73.1|FEN1_COPCI RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|46092541|dbj|BAD14303.1| flap endonuclease-1 [Coprinopsis cinerea]
Length = 458
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/212 (56%), Positives = 162/212 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+ KR +A ++
Sbjct: 53 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFEKREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVTKQHN++C++LL+LM VP V APSEAEAQCA L + G+
Sbjct: 113 EEAKEIGTAEDVDRFSRRTVKVTKQHNEECQKLLRLMSVPCVIAPSEAEAQCAELARGGK 172
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA SEDMD+LTF AP RHL ++K P+ E + L+ L++ M QF+DLCIL G
Sbjct: 173 VYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLEAALKGLDMDMSQFVDLCILLG 232
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CDY + I+G+G ++ALKLIR+ G ++ ++E++
Sbjct: 233 CDYLEPIKGVGPKSALKLIREFGGLKEVVEHL 264
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIP++WP++EA+++F +P+V+ +Q++++W PD EGL+ FLV+E GF+ +RV K EK
Sbjct: 343 QIPDEWPWEEAKQIFLKPDVIP-ADQVELEWKNPDVEGLVQFLVTEKGFSEERVRKGAEK 401
Query: 278 IKAAKNKSSQGRLESFF 294
+ N QGRL+ FF
Sbjct: 402 LTKFLNAKQQGRLDGFF 418
>gi|402580560|gb|EJW74510.1| hypothetical protein WUBG_14580, partial [Wuchereria bancrofti]
Length = 266
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 158/213 (74%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E+GE TSHL GMF RTIR+++ G+KP+YVFDG+PP +K EL KR +R +A
Sbjct: 53 LQTESGETTSHLLGMFYRTIRMIDNGIKPVYVFDGKPPQMKASELEKRTERRTEAEKQRN 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G++ + KF +R VKVTK+ N++ KRL+ LMG+P+++AP EAEAQCAAL K+G+V
Sbjct: 113 DAVELGDEASVNKFERRLVKVTKEQNEEAKRLVTLMGIPILDAPCEAEAQCAALAKAGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A SEDMD+LTFG+P LR ++ ++K+PV E + ++L++ + M QF+DLCIL GC
Sbjct: 173 FATVSEDMDALTFGSPILLRQMIASEAKKLPVKEMNLNQVLKDFGMNMGQFVDLCILLGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINR 214
DY +IRGIG + A +LI+++ IE +LE IN+
Sbjct: 233 DYVSTIRGIGPKKAFELIKKYECIENVLEAINQ 265
>gi|323454359|gb|EGB10229.1| hypothetical protein AURANDRAFT_53007 [Aureococcus anophagefferens]
Length = 538
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 179/307 (58%), Gaps = 16/307 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GE TSHLQG RT+R+LEAG KP++VFDG P+LK + L R + A + LA
Sbjct: 55 LTNSRGEATSHLQGFANRTLRMLEAGAKPVFVFDGAAPELKGKTLKGRSEAKRAAEEKLA 114
Query: 62 EAVEA---GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
A +A E++ K + + +VT+QHNDD KRLL+LMGVPVVEAP EAEA C AL +
Sbjct: 115 RARDADSGATTEEVYKAASASTRVTRQHNDDVKRLLRLMGVPVVEAPGEAEASCVALVRH 174
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMD----PSSRKIPVMEFEVAKILEELNL----TMD 170
G V +EDMD+LTFGA + +++L D + K P E ++A L EL TM
Sbjct: 175 GACDFVVTEDMDALTFGAAKMVKNLFDVEGARAKEKRPAYEIDLAAALRELGPRGLGTMA 234
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDWPYQE 227
F+D CIL GCDY D + G+G TA KL++ H S+E + + R+ R P W ++
Sbjct: 235 AFVDFCILCGCDYLDHVPGVGPATAAKLLKSHASLERAVVRVGRKVGGRPVAPHGWDFRA 294
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
AR LF P VV E + PD L FLV + FN DRV K + +++ + Q
Sbjct: 295 ARALFFAPTVVAAGE--TVDAPPPDYAALRAFLVDGHEFNGDRVDKMVARLRKCREAKPQ 352
Query: 288 GRLESFF 294
R++ FF
Sbjct: 353 KRIDDFF 359
>gi|84994172|ref|XP_951808.1| 5'-3' exonuclease [Theileria annulata strain Ankara]
gi|74952859|sp|Q4UFP0.1|FEN1_THEAN RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|65301969|emb|CAI74076.1| 5'-3' exonuclease, putative [Theileria annulata]
Length = 506
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 128/293 (43%), Positives = 182/293 (62%), Gaps = 9/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSH+ G+ R +LLE G+KP++VFD +PP+LK + L KR KR +A D
Sbjct: 55 LVNSKGESTSHIYGLMNRCSKLLEYGIKPVFVFDSKPPELKSKTLDKRRQKREEAKTDFK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ G+KE +K RTVKVTK ND K+LL+LMG+PV+EA EAEAQCA L
Sbjct: 115 KAISEGDKESAKKLVGRTVKVTKDMNDSAKKLLRLMGIPVIEALEEAEAQCAYLVTKNLC 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ VASED D+L FG LR++ +++KI ++ ++ K+L+ L DQF+D CIL GC
Sbjct: 175 HFVASEDTDTLVFGGWFLLRNVTSSANKKI--VKVDLQKVLDGLEFNFDQFVDFCILCGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD++ G+G +TA L++++ S+E I+ R++ + ++EA+ F P+V +
Sbjct: 233 DYCDTLEGVGPKTAYSLVKKYQSLEEIV------RFKGGDYDEFKEAKDYFLSPKVNEYD 286
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +K D EGL FLV EN F+ +RV K IEK+ K K Q L SF
Sbjct: 287 EN-SVKMGTIDPEGLTEFLVQENNFSKERVEKFIEKLLKFKTKKIQTSLLSFL 338
>gi|253744402|gb|EET00616.1| Flap structure-specific endonuclease [Giardia intestinalis ATCC
50581]
Length = 361
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 189/308 (61%), Gaps = 3/308 (0%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GE+TSHL G+ ++ R++EAG+KPI+VFDG+PP+ K+ EL KR R A +
Sbjct: 54 LANSSGEITSHLVGLLSKVTRMVEAGIKPIFVFDGKPPEDKQGELEKRRQAREAAELEQQ 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G+ E ++ S+RTVKVT+QH ++LL ++G+P V A EAEAQC A+ K+G
Sbjct: 114 KAEEEGDIERAKQLSRRTVKVTQQHCKQAEKLLDILGIPYVVAAGEAEAQCVAMAKAGLC 173
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
VAS D+D L FG+P +R+L ++I ME + +L EL + D+F+DLCIL GC
Sbjct: 174 EGVASSDLDVLAFGSPSLIRNLAQGGDKEI--MEINLDTVLNELGFSYDEFLDLCILCGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DY +S+ GIG +TA KLI ++ SIE L + + +WPY AR LFK P V+ +
Sbjct: 232 DYANSLEGIGPKTAYKLIVKYRSIEEALAADQGKLAEKAVNWPYARARELFKNPTVINPK 291
Query: 242 E-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
E + IKW + + FLV E F+ + K ++K+ AA+ K Q ++SF + +
Sbjct: 292 EIKKTIKWRPINRSEAMQFLVEEMEFDREATEKKLDKLVAARKKPKQCTIDSFVTVRSPS 351
Query: 301 SAPIKRKV 308
S K KV
Sbjct: 352 SEATKTKV 359
>gi|265141450|gb|ACY74444.1| flap endonuclease [Carukia barnesi]
Length = 236
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 110/184 (59%), Positives = 143/184 (77%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNE GE TSHL G+F RTIR++E G+KP+YVFDG+PP++K EL KR +R +A L
Sbjct: 53 LTNEEGETTSHLMGIFYRTIRMVENGIKPLYVFDGKPPEMKSGELTKRTERREEAQKQLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G+ E+IEKFS+R VKVT+QHN++CK+LLKLMG+P +EAP EAEAQCA L K G+V
Sbjct: 113 VAQETGDTENIEKFSRRLVKVTQQHNNECKQLLKLMGIPYIEAPCEAEAQCAELVKGGKV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+A A+EDMD LTFG+ LRHL +RK+P+ E+ + K+L+ L L+ D+FIDLCIL GC
Sbjct: 173 FAAATEDMDCLTFGSNVMLRHLTFSEARKMPIQEYHLPKVLDGLGLSQDEFIDLCILLGC 232
Query: 182 DYCD 185
DYC+
Sbjct: 233 DYCE 236
>gi|207343574|gb|EDZ71001.1| YKL113Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 261
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 161/232 (69%), Gaps = 6/232 (2%)
Query: 74 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 133
K +R VKV+K+HN++ ++LL LMG+P + AP+EAEAQCA L K G+VYA ASEDMD+L
Sbjct: 2 KQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAKKGKVYAAASEDMDTLC 61
Query: 134 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 193
+ P LRHL ++K P+ E + +L L+LT++QF+DLCI+ GCDYC+SIRG+G
Sbjct: 62 YRTPFLLRHLTFSEAKKEPIHEIDTELVLRGLDLTIEQFVDLCIMLGCDYCESIRGVGPV 121
Query: 194 TALKLIRQHGSIETILENI-----NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 248
TALKLI+ HGSIE I+E I N +++IPEDWPY++AR LF +PEV+ D ++ +KW
Sbjct: 122 TALKLIKTHGSIEKIVEFIESGESNNTKWKIPEDWPYKQARMLFLDPEVI-DGNEINLKW 180
Query: 249 SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300
S P E+ LI +L + F+ +RV I ++K QGRL+ FF+ V T
Sbjct: 181 SPPKEKELIEYLCDDKKFSEERVKSGISRLKKGLKSGIQGRLDGFFQVVPKT 232
>gi|357621466|gb|EHJ73288.1| flap endonuclease-1 [Danaus plexippus]
Length = 322
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/306 (43%), Positives = 184/306 (60%), Gaps = 58/306 (18%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ GE TSHL G F RTIRL+E G+KP+YVFDG+PPD+K +L KR +R +A +L
Sbjct: 53 LTSVDGETTSHLMGTFYRTIRLIEDGIKPVYVFDGKPPDMKSHQLNKRAERREEAEKELQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A EAG+ I+KF++R VKVT+QH + ++LLKLMG+PVVE A C A + ++
Sbjct: 113 KATEAGDTASIDKFNRRLVKVTQQHGAEARQLLKLMGIPVVE------APCEAEAQCAEL 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
FIDLCIL GC
Sbjct: 167 --------------------------------------------------FIDLCILLGC 176
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC SI+GIG + A++LI+QH SIE +L NI+ ++Y PE+W Y+ ARRLF++PE VT+
Sbjct: 177 DYCGSIKGIGPKRAIELIKQHRSIEQVLHNIDTKKYSPPENWEYENARRLFQQPE-VTEA 235
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTS 301
+ +++KWS PDEEGL+ FL + FN +RV +K+ A+ ++QGRL+ FFK ++ T
Sbjct: 236 KDVELKWSDPDEEGLVKFLCGDKQFNEERVRNGAKKLMKARTGTTQGRLDGFFKVLSTTP 295
Query: 302 APIKRK 307
P KRK
Sbjct: 296 NP-KRK 300
>gi|71031676|ref|XP_765480.1| flap endonuclease 1 [Theileria parva strain Muguga]
gi|122052062|sp|Q4N3S6.1|FEN1_THEPA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|68352436|gb|EAN33197.1| flap endonuclease 1, putative [Theileria parva]
Length = 494
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 183/302 (60%), Gaps = 10/302 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSH+ G+ R + LE G+KP++VFD +PP+LK + L KR +R +A L
Sbjct: 55 LVNSKGESTSHIYGLMNRCSKFLEYGIKPVFVFDSKPPELKTKTLEKRRQQREEANASLK 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ G+KE ++K RTVKV+K+ N+ K+LL+LMGVPV+EA EAEAQCA L
Sbjct: 115 KAISEGDKESVKKLVGRTVKVSKEMNESAKKLLRLMGVPVIEALEEAEAQCAYLVTKNLC 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
VASED D+L FG LR++ SS+KI ++ ++ K+L+ L DQFID CIL GC
Sbjct: 175 RFVASEDTDTLVFGGAFLLRNVASSSSKKI--LKVDLQKVLDGLEFNFDQFIDFCILCGC 232
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYCD++ G+G +TA L++++ ++E I+ N Y ++EA+ F P+V +
Sbjct: 233 DYCDTLEGVGPKTAYSLVKKYQNLEEIV-NFKGGDYD-----DFKEAKEYFLSPKVNEYD 286
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK-PVANT 300
E +K D EGL FLV EN F+ +RV K IEK+ K K Q L SF P N
Sbjct: 287 EN-SVKLGTIDPEGLTEFLVQENNFSKERVEKFIEKLLKFKTKKIQTSLLSFLTAPQHNN 345
Query: 301 SA 302
A
Sbjct: 346 KA 347
>gi|384485605|gb|EIE77785.1| hypothetical protein RO3G_02489 [Rhizopus delemar RA 99-880]
Length = 496
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 181/307 (58%), Gaps = 48/307 (15%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RT+R+++ G+KP+YVFDG+PP LK ELAKR +++ +A + +
Sbjct: 219 VLQNEEGETTSHLMGMFYRTVRMVDNGIKPVYVFDGKPPTLKSGELAKRKARKEEAQEKM 278
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G D+ +++KRTVKVT +HN++CKRLLK MG+P VEAP EAEAQCA L + G+
Sbjct: 279 EEANEIGTAADVTRYTKRTVKVTSEHNNECKRLLKAMGIPYVEAPCEAEAQCAELARGGK 338
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VYA ASEDMD+LTF AP LRHL +RK+P+ E + K L + L MDQ
Sbjct: 339 VYAAASEDMDTLTFKAPILLRHLTFSEARKMPIDEVNLEKALAGMGLDMDQ--------- 389
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENIN-RERYQIPEDWPYQEARRLFKEPEVVT 239
+H +I+ +++++ R + IP++W Y +AR LF +PEV
Sbjct: 390 --------------------EHKTIDEAIKHLSQRLKDGIPKEWNYADARELFTKPEVTP 429
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVAN 299
E + + N DR+ K EK+ +++Q R++ FFK + +
Sbjct: 430 ASE------------------IEASAINEDRIRKGCEKLAKNLKQATQTRVQDFFKTIPS 471
Query: 300 TSAPIKR 306
T+ KR
Sbjct: 472 TTPKKKR 478
>gi|269859663|ref|XP_002649556.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
gi|317374899|sp|B7XHS8.1|FEN1_ENTBH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|220067107|gb|EED44575.1| FLAP endonuclease-1 [Enterocytozoon bieneusi H348]
Length = 358
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 187/301 (62%), Gaps = 20/301 (6%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSH+ G+F R+IR +E G+ P++VFDG PP+ K E KR +R D L +A+E ++
Sbjct: 60 TSHISGIFYRSIRWIENGIIPVFVFDGIPPEEKIHEFEKRTKRRQDINAKLQDAIEQQDQ 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+ K+ + VK+ K H ++C++ L+L+ +P V APSEAEA CA LCKS V AVA+EDM
Sbjct: 120 VLVSKYDRMNVKMEKSHIEECQKTLRLLNIPYVIAPSEAEAYCAWLCKSKFVDAVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
DSL FG+P LR+ S+K+PV E+ + KILE L TM+QF+DLCIL GCDY +IRG
Sbjct: 180 DSLCFGSPLLLRNFNTALSQKLPVEEYNLHKILEGLQFTMEQFVDLCILLGCDYSATIRG 239
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF-----KEPEVVTDEEQL 244
+G + A + I+++ SI+ ++ ++ P+D+ Y+EAR +F T+E +
Sbjct: 240 VGMKRAFEYIKKYKSIDNLIGIVD-----FPDDFKYKEARTIFFTLGTDTSNNFTNENPI 294
Query: 245 QIK---W-------SAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
W ++ + E +I+FL +E GF+ R+ I+K++ K + Q R++SFF
Sbjct: 295 NTNIATWDLIAVDSASINIEAVIDFLCNEKGFDKGRIETGIKKLQKQKKVNKQTRIDSFF 354
Query: 295 K 295
K
Sbjct: 355 K 355
>gi|387595247|gb|EIJ92872.1| flap endonuclease 1-B [Nematocida parisii ERTm1]
Length = 342
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 183/304 (60%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE T+H+ G+F +TI LLE G+ P+Y+FDGQPP+LK+ L +R ++ A DL
Sbjct: 53 LKNKNGETTAHIYGIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLV 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV +E+ K +KRTV+ TK H + + LLK+MG+P + AP+EAE CAAL G V
Sbjct: 113 EAV---TEEEKVKHAKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SEDMDSL FG LR+ +K+ VME + +L++ L +FID+CIL G
Sbjct: 170 NGVVSEDMDSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLG 229
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPED-WPYQEARRLFK-----E 234
CDYC ++G+G + L+++H SIE +LEN R +PE+ WPY +AR +F +
Sbjct: 230 CDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQAREIFTSQDAGK 286
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V + S PD + ++ FLV ENGF++ +V AIE+++A Q L F
Sbjct: 287 PPVFS--------LSPPDVKEILQFLVEENGFDTKKVETAIERLQAQNKTKKQSSLLMFA 338
Query: 295 KPVA 298
K V
Sbjct: 339 KKVV 342
>gi|119872195|ref|YP_930202.1| flap endonuclease-1 [Pyrobaculum islandicum DSM 4184]
gi|166973706|sp|A1RSC7.1|FEN_PYRIL RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119673603|gb|ABL87859.1| flap endonuclease 1 [Pyrobaculum islandicum DSM 4184]
Length = 346
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 189/302 (62%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + A +++
Sbjct: 51 LMDRVGRITSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKVKEKAMEEVL 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A++ G KED+ K+ KR V +T +D K+LL MGVP V+APSE EAQ A + K G
Sbjct: 111 KAIKEGRKEDVAKYMKRAVFLTSDMVEDAKKLLTYMGVPWVQAPSEGEAQAAHMAKRGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFI 173
+AV S+D DSL FG+PR +R+L RKI V+E E+ +L+ L L +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPRLVRNLAVSPRRKIGEEVIELSPEIIELDAVLKSLRLKNREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
DL IL G DY D + G+G Q ALKL+ + G +E +LE + R Y P D P E ++ F
Sbjct: 231 DLAILLGTDYNPDGVPGVGPQKALKLVWEFGGLEKMLETVLRGVY-FPVD-PL-EIKKFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VTDE IK PDE+ LI+FLV E+ F+ DRV KA+E++K A+ K L+S
Sbjct: 288 LNPP-VTDEYSTDIK--KPDEQKLIDFLVREHDFSEDRVLKAVERLKRAQTKYKISSLDS 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|399218750|emb|CCF75637.1| unnamed protein product [Babesia microti strain RI]
Length = 452
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 189/313 (60%), Gaps = 17/313 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSH+ G+ R LLE G++PIYVFDG+PP K L KR ++ +A L
Sbjct: 55 LVNANGEPTSHIAGLMLRVAALLELGIRPIYVFDGEPPQAKSDTLLKRKERKEEALKLLE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E G+ E+I+K + RTV+V+++ + + L+L G+PVVEA EAEAQCA + K G
Sbjct: 115 QAMETGDLEEIKKQTSRTVRVSREQSKQAMKFLELCGLPVVEASQEAEAQCAYMVKWGIA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHL-------------MDPSSRKIPVMEFEVAKILEELNLT 168
++ED D LTFG P +R+L + S K ++ ++ K L L
Sbjct: 175 DVASTEDTDCLTFGTPVLIRNLSNALAISSNKNSKFNSKSPKSHLLRIDLNKTLNGFKLN 234
Query: 169 MDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA 228
++QF+DLCIL GCDYC ++G+G +TAL L++++ +IE I+ ++E I E++ Y+ A
Sbjct: 235 INQFVDLCILCGCDYCGKLKGVGPKTALSLLQKYKTIEEIIA--HKEITCIDENFDYKMA 292
Query: 229 RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
R F P++V EE ++++W P+ LI+FLV +N FN DRV K I K+ + Q
Sbjct: 293 RDAFLSPKIVPKEE-IKLEWREPNIPELIDFLVVKNNFNQDRVNKFINKLINIRKVKPQQ 351
Query: 289 RLESFFKPVANTS 301
++ SFFK NTS
Sbjct: 352 QISSFFK-AKNTS 363
>gi|18312112|ref|NP_558779.1| flap endonuclease-1 [Pyrobaculum aerophilum str. IM2]
gi|28380018|sp|Q8ZYN2.1|FEN_PYRAE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|18159543|gb|AAL62961.1| DNA endonuclease rad2 homolog [Pyrobaculum aerophilum str. IM2]
Length = 346
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/302 (43%), Positives = 191/302 (63%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG +TSHL G+F RTI LLEAG++P+YVFDG+PP+ K E+ +R R A +++
Sbjct: 51 LMDRAGRITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVL 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ G +ED+ K++KR V +T + D+ KRLL MGVP V+APSE EAQ A + + G
Sbjct: 111 RAIKEGRREDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMARKGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFI 173
+AV S+D DSL FG+P+ +R+L RKI V+E E+ +L L L +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPKLVRNLAVSPKRKIGEEVIELTPEIIELDAVLRALRLKNREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
DL IL G DY D + G+G Q ALKLI + GS+E +LE + + Y P D P E ++ F
Sbjct: 231 DLAILLGTDYNPDGVPGVGPQKALKLIWEFGSLEKLLETVLKGAY-FPID-PL-EIKKFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VTD+ +++ PDE L +FL+ E+ F+ +RV+KA+E+++ A+ K L+S
Sbjct: 288 LNPP-VTDQYATEVR--DPDEAALKDFLIREHDFSEERVSKALERLRKARGKLKTSSLDS 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|387592620|gb|EIJ87644.1| flap endonuclease 1-B [Nematocida parisii ERTm3]
Length = 371
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 185/298 (62%), Gaps = 22/298 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE T+H+ G+F +TI LLE G+ P+Y+FDGQPP+LK+ L +R ++ A DL
Sbjct: 53 LKNKNGETTAHIYGIFYKTINLLEKGIIPVYIFDGQPPELKENTLTERRIRKEQAEKDLV 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV +E+ K +KRTV+ TK H + + LLK+MG+P + AP+EAE CAAL G V
Sbjct: 113 EAV---TEEEKVKHAKRTVRATKYHVESAQHLLKVMGIPYMTAPNEAEGFCAALNICGAV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SEDMDSL FG LR+ +K+ VME + +L++ L +FID+CIL G
Sbjct: 170 NGVVSEDMDSLAFGGKILLRNFFPALMKKKLSVMEISLEMVLKQTGLDQSEFIDMCILLG 229
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPED-WPYQEARRLFK-----E 234
CDYC ++G+G + L+++H SIE +LEN R +PE+ WPY +AR +F +
Sbjct: 230 CDYCQKLKGMGPKKVYDLVQEHRSIEKLLEN---GRVTMPEEGWPYIQAREIFTSQDAGK 286
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V + S PD + ++ FLV ENGF++ +V AIE+++ A+NK+ + + S
Sbjct: 287 PPVFS--------LSPPDVKEILQFLVEENGFDTKKVETAIERLQ-AQNKTKKTVISS 335
>gi|38488751|ref|NP_942115.1| flap endonuclease 1 [Danio rerio]
gi|29436437|gb|AAH49413.1| Flap structure-specific endonuclease 1 [Danio rerio]
Length = 330
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 136/177 (76%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE+G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLESGIKPVYVFDGKPPQLKSGELEKRVERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+A EAG +E+I+KFSKR VKVTKQHN++CK+LL LMGVP +EAP EAEA CAAL K+G+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTKQHNEECKKLLSLMGVPYIEAPCEAEASCAALVKAGK 171
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 177
VYA A+EDMD LTFG LRHL ++K+P+ EF ++IL+++ LT Q +D +
Sbjct: 172 VYATATEDMDGLTFGTTVLLRHLTASEAKKLPIQEFHFSRILQDMELTHQQAVDTSV 228
>gi|170119612|ref|XP_001890929.1| predicted protein [Laccaria bicolor S238N-H82]
gi|317374866|sp|B0E412.1|FEN12_LACBS RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName:
Full=Flap structure-specific endonuclease 1-B
gi|164633979|gb|EDQ98419.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 469
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 160/217 (73%), Gaps = 5/217 (2%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LTN+AGE T +L G+F RT+R++E G+KP Y+FDG+PP+LKK L+KR +R +A ++
Sbjct: 51 LLTNDAGETTRYLMGLFYRTLRIVENGIKPAYIFDGKPPELKKGVLSKRLERREEAKEEG 110
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G ED+++FS+RTVKVT++HN +C+RLL+LMG+PVV APSEAEAQCA L + G+
Sbjct: 111 EEAKETGTVEDVDRFSRRTVKVTREHNQECQRLLRLMGIPVVIAPSEAEAQCAELARGGK 170
Query: 121 V-----YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
V YA SEDMD+LTF AP RHL ++K P+ E + + LE + FIDL
Sbjct: 171 VYIALYYAAGSEDMDTLTFNAPILFRHLTFSEAKKQPISEINLKEALEGPLYSFPTFIDL 230
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
CIL GCDY + I+G+G ++ALKLIR++G ++ +++++
Sbjct: 231 CILLGCDYLEPIKGVGPKSALKLIREYGGLKGVVKHL 267
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE+WP++EA+++FK P V + ++W+ PD +GL+ FLV+E GFN DRV K EK
Sbjct: 348 QIPEEWPWEEAKKIFKRPSHVHRD----LEWTNPDVDGLVQFLVNEKGFNEDRVRKGAEK 403
Query: 278 IKAAKNKSSQGRLESFF--KPVANTSAP 303
++ N QGRL+ FF KP +AP
Sbjct: 404 LQKFLNSKQQGRLDGFFSVKPKEKAAAP 431
>gi|254166886|ref|ZP_04873740.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289596167|ref|YP_003482863.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
gi|197624496|gb|EDY37057.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|289533954|gb|ADD08301.1| flap structure-specific endonuclease [Aciduliprofundum boonei T469]
Length = 339
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 183/302 (60%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG VTSHL G+ RT L G+KP+YVFDG+PP+LK + + +R R +A +
Sbjct: 47 LRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A++ GN E+ +++ +TK D+ K+LL MG+P V+APSE EAQ A + K G
Sbjct: 107 KALKEGNLEEARSKAQQATFLTKDMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDT 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-----AKILEE----LNLTMDQF 172
YA AS+D DSL FGAP +R+L RK+P V +LEE L ++ +Q
Sbjct: 167 YASASQDFDSLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+D+ IL G DY + I+G+G +TALKLI+++GS+E I I Y IP Y+E + +F
Sbjct: 227 VDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKI---IQERGYTIPH---YKEIKDIF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VTD +L+ W A DEE LI+FL E+ F+ DRV AIEK++A K Q L+S
Sbjct: 281 LNPP-VTDSYKLE--WRAFDEEKLIDFLCEEHDFSRDRVMSAIEKMRAFKKYREQRSLDS 337
Query: 293 FF 294
+F
Sbjct: 338 WF 339
>gi|254168936|ref|ZP_04875776.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
gi|197622200|gb|EDY34775.1| XPG I-region domain protein [Aciduliprofundum boonei T469]
Length = 339
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 182/302 (60%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG VTSHL G+ RT L G+KP+YVFDG+PP+LK + + +R R +A +
Sbjct: 47 LRDHAGRVTSHLSGLLYRTANFLAEGIKPVYVFDGRPPELKMRTIGERIKIRMEAKEAWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A++ GN E+ +++ +TK D+ K+LL MG+P V+APSE EAQ A + K G
Sbjct: 107 KALKEGNLEEARSKAQQATFLTKNMVDEAKKLLDYMGIPWVQAPSEGEAQAAYMAKKGDT 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-----AKILEE----LNLTMDQF 172
YA AS+D DSL FGAP +R+L RK+P V +LEE L ++ +Q
Sbjct: 167 YASASQDFDSLLFGAPNLVRNLAITGKRKLPRKNVYVDVKPEIILLEENLKNLGISREQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+D+ IL G DY + I+G+G +TALKLI+++GS+E I I Y IP Y+E + +F
Sbjct: 227 VDIGILVGTDYNEGIKGVGPKTALKLIKKYGSLEKI---IQERGYTIPH---YKEIKDIF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VTD +L+ W A DEE LI FL E+ F+ DRV AIEK++A K Q L+S
Sbjct: 281 LNPP-VTDSYKLE--WRAFDEEKLIEFLCDEHDFSRDRVMSAIEKMRAFKKYREQRSLDS 337
Query: 293 FF 294
+F
Sbjct: 338 WF 339
>gi|156082429|ref|XP_001608699.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis T2Bo]
gi|317374876|sp|A7AX58.1|FEN1_BABBO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154795948|gb|EDO05131.1| XPG N-terminal domain and XPG I-region domain containing protein
[Babesia bovis]
Length = 672
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 198/311 (63%), Gaps = 19/311 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN GE TSH+ G+ R IRLLE G++P++VFD PP+ K Q LAKR R +A L
Sbjct: 55 LTNSKGESTSHIAGLLNRCIRLLELGIRPVFVFDSTPPEAKSQTLAKRKLLREEAESSLE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E +KE I K+ RTV++T++ N+ K+LL+L+GVPV+EA EAEAQCA LC+ G V
Sbjct: 115 KAIEEDDKEAIRKYVGRTVRITQKENESAKKLLRLVGVPVIEAAEEAEAQCAYLCQRGFV 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
AV SED D+L F L++L ++ PV+ ++AK LE L LT +QF D CIL GC
Sbjct: 175 TAVGSEDADALVFRCGVLLKNL---TASNKPVVRVDLAKALELLELTHEQFTDFCILCGC 231
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
DYC +++G+G +TA LI++HGSI ILE + E + Y+ A+ F++P+V
Sbjct: 232 DYCGTLKGVGPKTAYNLIKKHGSISRILE-VRSETLE-----GYEAAQEYFRDPKV---R 282
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF--KPVA- 298
+ I + +GL FL+SEN F+ +RV K IE+++ A++K +Q L+SFF P A
Sbjct: 283 DITTIDRCEANIDGLREFLISENDFSEERVDKLIERLQKARSKKTQLSLKSFFGYPPRAA 342
Query: 299 ----NTSAPIK 305
N + PIK
Sbjct: 343 NITRNYTVPIK 353
>gi|327310721|ref|YP_004337618.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
gi|326947200|gb|AEA12306.1| flap endonuclease-1 [Thermoproteus uzoniensis 768-20]
Length = 346
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 182/304 (59%), Gaps = 19/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+EAG++P+YVFDG+PP+LK+ E+ R + + A + +
Sbjct: 51 LMDSRGRVTSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRAEIESRRAAKEKAREQME 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G ED+ K++KR + VT Q +D K LL MG+P V+APSE EAQ A + G V
Sbjct: 111 RAAAEGRAEDVAKYAKRVIYVTDQMAEDAKALLTAMGIPWVQAPSEGEAQAAYMAARGSV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRK-------IPVMEFEVAKILEELNL-TMDQFI 173
+ S+D DSL FGAPR +R+L S RK +P E+ K+L+ L L + +Q +
Sbjct: 171 WGAGSQDYDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELDKVLKALKLKSREQLV 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARR 230
D+ IL G DY D + G+G Q ALK+I + GS+E L+ + + WP E ++
Sbjct: 231 DIAILLGTDYNPDGVPGVGPQKALKIILEQGSLENALKTVLKG-----VKWPVDPLEIKK 285
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
+F P +Q ++++ PDE ++ LV E+ F+ DRV K +E+++ A +K+ L
Sbjct: 286 IFLNPPAT---DQYRVEFREPDEAKVLEILVEEHDFSRDRVEKGLERLRRALSKAKTSSL 342
Query: 291 ESFF 294
+SFF
Sbjct: 343 DSFF 346
>gi|428672546|gb|EKX73459.1| flap endonuclease-1, putative [Babesia equi]
Length = 746
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 139/294 (47%), Positives = 179/294 (60%), Gaps = 17/294 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSH+ G+ R +R+LEAG+KPI+VFD PPDLK L+KR +R +A L
Sbjct: 55 LVNSKGESTSHISGLMNRCVRILEAGIKPIFVFDSTPPDLKLDTLSKRKERREEAEASLE 114
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A EAG+ E I+K RTVKV+K+ N+ K+LL+LMG+PVVEA EAEAQCA L + G
Sbjct: 115 AAKEAGDSETIKKLVGRTVKVSKEQNNSAKQLLRLMGIPVVEAKEEAEAQCAQLVQEGIA 174
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
AVASED DSL FG LR+L S +K V+ + K+L L T QF D CIL GC
Sbjct: 175 TAVASEDSDSLVFGCRILLRNL---SGKK--VLRIDQEKVLSLLGFTRAQFTDFCILCGC 229
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRLFKEPEVVTD 240
DYC +I+GIG + A LI+++ SIE IL+ E P ++EARR F P+V
Sbjct: 230 DYCGTIKGIGPKNAYSLIKKYKSIEEILKFKG-------ETLPGFEEARRYFLAPQVF-- 280
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E + + P+ E L FL+ EN FNS+RV K I K+ A+ Q L FF
Sbjct: 281 -EGANPETTFPNLEELRKFLI-ENDFNSERVDKFILKLTKARKVKVQLSLGRFF 332
>gi|171186427|ref|YP_001795346.1| flap endonuclease-1 [Pyrobaculum neutrophilum V24Sta]
gi|226700955|sp|B1YC46.1|FEN_THENV RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170935639|gb|ACB40900.1| XPG I domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 349
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/302 (42%), Positives = 187/302 (61%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+EAG+KP+YVFDG+PP+ K E+ R + A +++
Sbjct: 51 LMDRQGRVTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEARRRVKEKAMEEVV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ G ++D+ K+ KR + +T + +D KRLL MGVP V+APSE EAQ A + K G
Sbjct: 111 KAIREGKRDDVAKYMKRVIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAHMAKRGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHL-MDPSSRK------IPVMEFEVAKILEELNLT-MDQFI 173
+AV S+D DSL FG+PR +R+L + P R + E+ +L+ L L +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPRLVRNLAVSPKRRSGEEVVEVSPEVVELDSVLKALKLKGREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
D+ IL G DY D + G+G Q ALKL+ + GS+E +L+ + R P D P E +R F
Sbjct: 231 DVAILLGTDYNPDGVPGVGPQKALKLVLEFGSLEKMLDTVLRG-VSFPVD-PL-EIKRFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VT+E L++K DE GL+NFLV E+ F+ +RV KA+E++K A+ + L+S
Sbjct: 288 LNPP-VTEEYALELK--NVDERGLVNFLVGEHDFSEERVAKAVERLKKARARQKTSSLDS 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|126460720|ref|YP_001056998.1| flap endonuclease-1 [Pyrobaculum calidifontis JCM 11548]
gi|166973705|sp|A3MY15.1|FEN_PYRCJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126250441|gb|ABO09532.1| flap endonuclease 1 [Pyrobaculum calidifontis JCM 11548]
Length = 346
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 184/302 (60%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG +TSHL G+F RTI LLEAG+KP+YVFDG+PP+ K E+ +R + A +++
Sbjct: 51 LMDRAGRITSHLSGLFYRTINLLEAGVKPVYVFDGKPPEFKLLEIEQRKKAKEKALEEVE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ G +ED+ K++KR + +T + +D K+LL MG+P V+APSE EAQ A + K G
Sbjct: 111 KAIREGRREDVAKYAKRAIFLTSEMVEDAKKLLTYMGIPWVQAPSEGEAQAAHMAKRGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM--------DQFI 173
+AV S+D DSL FG+PR +R+L RK+ E++ L EL+ + +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPRLVRNLAVSPKRKVGEEVVELSPELIELDAVLKSLKLKGREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
DL IL G DY + + G+G Q ALKLI + GS+E +L+ + + Q P D P + R F
Sbjct: 231 DLAILLGTDYNPEGVPGVGPQKALKLIWEFGSLEKLLQTVLKG-VQFPVD-PLK-IREFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V +Q + S PDE ++ LV E+ F+ +RV KA+E++ A+ K L++
Sbjct: 288 LNPPVT---DQYSTELSTPDERKIVELLVEEHDFSQERVAKALERLAKARGKVKTTSLDA 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|389860888|ref|YP_006363128.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
gi|388525792|gb|AFK50990.1| flap endonuclease-1 [Thermogladius cellulolyticus 1633]
Length = 353
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 187/307 (60%), Gaps = 20/307 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G +TSHL G+F RTI L+E G+KP+YVFDG PP+LK +EL +R + R +A
Sbjct: 51 LMDSSGRITSHLSGLFYRTINLVEEGIKPVYVFDGNPPELKIKELERRKALREEAAKKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV+ G+ E +++ + K+T ++ KRLLK+MG+P V+AP+E EAQ A + + G
Sbjct: 111 EAVKEGDLEAARRYAMMSSKLTSDMVEEAKRLLKVMGIPWVQAPAEGEAQAAFMVRRGDA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DSL FG+PR +R+L RK+P + E++K+ E+L +T +Q
Sbjct: 171 YASASQDYDSLLFGSPRLVRNLTISGKRKLPRKDAYVEVKPEVIELSKLTEKLGITREQL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY + GIG +TAL LIR +GSIE I + R R E+ + +
Sbjct: 231 IDIGILLGTDYNPEGFEGIGPKTALTLIRTYGSIEKIPKGYLRTR----EEVDVVKIKNY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-- 289
F P V + +++W PD++G++ LV ++ FN +RV A+E++ A + +GR
Sbjct: 287 FLHPPVTA---EYKLEWIEPDQKGIVEVLVKDHDFNEERVKNAVERLSKAYKEFLKGRQL 343
Query: 290 -LESFFK 295
L+ +FK
Sbjct: 344 GLDQWFK 350
>gi|374327648|ref|YP_005085848.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
gi|356642917|gb|AET33596.1| flap endonuclease-1 [Pyrobaculum sp. 1860]
Length = 346
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 188/304 (61%), Gaps = 19/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI LLE+G+KP+YVFDG+PP+ K E+ R R A +++
Sbjct: 51 LMDREGRITSHLSGLFYRTINLLESGIKPVYVFDGKPPEFKLAEIESRRKTREKAMEEVV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A++ G KED+ K++KR V +T + ++ ++LL MGVP V+APSE EAQ A + G
Sbjct: 111 KALKEGRKEDVIKYAKRAVFITSEMVEESRKLLSYMGVPWVQAPSEGEAQAAYMVVKGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM--------DQFI 173
+AV S+D D+L FG+PR +R+L R++ E+A + EL+ + +Q I
Sbjct: 171 WAVGSQDYDALLFGSPRLVRNLAVSPKRRVGEEVVELAPEIIELDAVLKALRLKNREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARR 230
DL IL G DY D + G+G Q ALKLI + GS+E +L+ + + + +P E +R
Sbjct: 231 DLAILLGTDYNPDGVPGMGPQKALKLIWEFGSLEKMLDTVLKGVH-----FPVNPLEIKR 285
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F +P VTDE ++K PDEE L +FLV E+ F+ +RV KA+E+++ A+ K L
Sbjct: 286 FFLQPP-VTDEYTTEVK--TPDEERLRDFLVREHDFSEERVEKALERLRKARGKLRTSSL 342
Query: 291 ESFF 294
+SFF
Sbjct: 343 DSFF 346
>gi|156937484|ref|YP_001435280.1| flap endonuclease-1 [Ignicoccus hospitalis KIN4/I]
gi|166973698|sp|A8AAC1.1|FEN_IGNH4 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|156566468|gb|ABU81873.1| flap endonuclease 1 [Ignicoccus hospitalis KIN4/I]
Length = 350
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 182/306 (59%), Gaps = 20/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +LE G+K YVFDG PP LK +E+ +R + +A
Sbjct: 51 LMDSKGRVTSHLSGLFYRTINMLENGIKVAYVFDGAPPKLKTREIERRQKLKQEAEKKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV G+ E+ K+++ + K+TK+ ++ KRLL+ MGVP V+APSE EAQ A + G V
Sbjct: 111 EAVRRGDVEEARKYAQMSAKLTKEMVEEAKRLLEAMGVPWVQAPSEGEAQAAYMAAKGDV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM---------EFEVAKILEELNLTMDQF 172
+A AS+D DSL FG+PR +R+L RK+P E + +LEEL +T +Q
Sbjct: 171 WASASQDYDSLLFGSPRLVRNLAVSGRRKLPNKNVYVEVKPEEITLKCVLEELGITREQL 230
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+ + +L G DY ++G+G +TAL+ ++ +G +E +L + + ++ Y EA F
Sbjct: 231 VAIAVLIGTDYTPGVKGVGPKTALRYVKSYGDLERVLTALGVDDKEL-----YLEAYNFF 285
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSS--QGR 289
P+V D E + W PD + +I LV E+ FN +RV KAIE++ KA K K S Q
Sbjct: 286 LNPQVTDDYE---LVWRRPDPQKIIEILVYEHDFNEERVRKAIERLMKAWKEKLSTKQST 342
Query: 290 LESFFK 295
L+ FFK
Sbjct: 343 LDMFFK 348
>gi|389852752|ref|YP_006354986.1| flap endonuclease-1 [Pyrococcus sp. ST04]
gi|388250058|gb|AFK22911.1| flap endonuclease-1 [Pyrococcus sp. ST04]
Length = 341
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 177/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ KK+EL KR R +A
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKRELEKRKEAREEAEIKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ K+++R +V + +D K+LL+LMG+PV++APSE EAQ A + G+V
Sbjct: 107 EALAKGDIEEARKYAQRATRVNEMLIEDAKKLLELMGIPVIQAPSEGEAQAAYMASKGKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L L LT ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNIYVEIKPELIVLDEVLSSLKLTREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL+++R ++Q D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALEIVRHSKD--------PLAKFQRQSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P VTD+ +LQ W PDEEG++ FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPP-VTDDYKLQ--WREPDEEGILRFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|24987745|pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
gi|24987746|pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
Pyrococcus Horikoshii
Length = 343
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 175/303 (57%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ K++EL KR R +A
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ GN E+ K+++R KV + +D K+LL+LMG+P+++APSE EAQ A + G V
Sbjct: 107 EALAKGNLEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P + V ++L+EL +T ++
Sbjct: 167 YASASQDYDSLLFGAPRLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY ++GIG + AL+++R ++Q D +
Sbjct: 227 IELAILVGTDYNPGGVKGIGPKKALEIVRYSRD--------PLAKFQRQSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V + + W PDEEG++ FL E+ F+ +RV IE++K A Q LE
Sbjct: 279 FLNPPVTN---EYSLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|332157650|ref|YP_004422929.1| flap endonuclease-1 [Pyrococcus sp. NA2]
gi|331033113|gb|AEC50925.1| flap endonuclease-1 [Pyrococcus sp. NA2]
Length = 342
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 179/304 (58%), Gaps = 23/304 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ KK+EL KR R +A
Sbjct: 47 LMDSKGRMTSHLSGLFYRTINLMEAGIKPVYVFDGKPPEFKKKELEKRREAREEAEVKWR 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ K+++R KV + +D K+LL+LMG+P+V+APSE EAQ A + G V
Sbjct: 107 EALARGDIEEARKYAQRATKVNEMLIEDAKQLLQLMGIPIVQAPSEGEAQAAYMAMKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P + V +L +L +T ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGKRKMPGKDVYVEVKPELIILEDVLNQLKITREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIR-QHGSIETILENINRERYQIPEDWPYQEARR 230
I+L IL G DY I+GIG + AL++++ + + + + YQI E
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALEIVKYSKDPLAKFQKQSDVDLYQIKE--------- 277
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P VTDE L W PDEEG+I FL E+ F+ +RV IE++K A Q L
Sbjct: 278 FFLNPP-VTDEYSLT--WKEPDEEGIIRFLCDEHDFSEERVKNGIERLKKAIKAGKQSTL 334
Query: 291 ESFF 294
ES+F
Sbjct: 335 ESWF 338
>gi|14591211|ref|NP_143287.1| flap endonuclease-1 [Pyrococcus horikoshii OT3]
gi|28380013|sp|O50123.1|FEN_PYRHO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|3257838|dbj|BAA30521.1| 343aa long hypothetical 5' nuclease [Pyrococcus horikoshii OT3]
Length = 343
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 175/303 (57%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ K++EL KR R +A
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKRKELEKRREAREEAELKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ GN E+ K+++R KV + +D K+LL+LMG+P+++APSE EAQ A + G V
Sbjct: 107 EALAKGNLEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P + V ++L+EL +T ++
Sbjct: 167 YASASQDYDSLLFGAPRLIRNLTITGKRKMPGKDVYVEIKPELVVLDEVLKELKITREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY ++GIG + AL+++R ++Q D +
Sbjct: 227 IELAILVGTDYNPGGVKGIGPKKALEIVRYSRD--------PLAKFQRQSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V + + W PDEEG++ FL E+ F+ +RV IE++K A Q LE
Sbjct: 279 FLNPPVTN---EYSLSWKEPDEEGILKFLCDEHNFSEERVKNGIERLKKAIKAGRQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|14520948|ref|NP_126423.1| flap endonuclease-1 [Pyrococcus abyssi GE5]
gi|28380024|sp|Q9V0P9.1|FEN_PYRAB RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|5458165|emb|CAB49654.1| fen1 FLAP endonuclease-1 [Pyrococcus abyssi GE5]
gi|380741502|tpe|CCE70136.1| TPA: flap endonuclease-1 [Pyrococcus abyssi GE5]
Length = 343
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/303 (39%), Positives = 174/303 (57%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP+YVFDG+PP KK+EL KR R +A
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ K+++R KV + +D K+LL+LMG+P+V+APSE EAQ A + G V
Sbjct: 107 EALAKGDIEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIVQAPSEGEAQAAYMAGKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FG PR +R+L RK+P + V ++L+EL +T ++
Sbjct: 167 YASASQDYDSLLFGTPRLVRNLTITGKRKMPGKDIYVEIKPELIVLEEVLKELKITREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL++++ ++Q D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALEIVKYSKD--------PLAKFQRQSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P D +KW PDEEG+I FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPTTDD---YSLKWKEPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|379005480|ref|YP_005261152.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
gi|375160933|gb|AFA40545.1| flap structure-specific endonuclease [Pyrobaculum oguniense TE7]
Length = 346
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 184/302 (60%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG +TSH+ G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + AT++L
Sbjct: 51 LMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRRAKEKATEELV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ G ++++ K++KR + +T + +D KRLL MGVP V+APSE EAQ A + + G
Sbjct: 111 RAIKEGRRDEVAKYAKRAIFLTNEMVEDAKRLLTYMGVPWVQAPSEGEAQAAYMARRGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFI 173
+AV S+D DSL FG+PR +R+L RK+ V+E E+ +L+ L L + +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPRLVRNLAASPKRKVGDEVVELSPEIIELDTVLKSLRLRSREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
DL IL G DY D + GIG Q ALKLI + GS+E +L+ + R P D P E +R F
Sbjct: 231 DLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRG-VTFPID-PV-EIKRFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V K PD+ L FLV E+ F +RV +A+E++K A K L+S
Sbjct: 288 LNPPVTDTYTTDVTK---PDDAKLREFLVHEHDFGEERVERALERLKKAMGKLRTSALDS 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|145592541|ref|YP_001154543.1| flap endonuclease-1 [Pyrobaculum arsenaticum DSM 13514]
gi|166973704|sp|A4WNC4.1|FEN_PYRAR RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|145284309|gb|ABP51891.1| flap endonuclease 1 [Pyrobaculum arsenaticum DSM 13514]
Length = 346
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/302 (42%), Positives = 185/302 (61%), Gaps = 15/302 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + AG +TSH+ G+F RTI L+EAG+KP+YVFDG+PP+ K E+ +R + AT++L
Sbjct: 51 LMDRAGRITSHISGLFYRTINLMEAGIKPVYVFDGKPPEFKLAEIEERRKAKEKATEELV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ G ++++ K++KR + +T + +D K+LL MGVP V+APSE EAQ A + + G
Sbjct: 111 RAIKEGRRDEVAKYAKRAIFLTNEMVEDAKKLLTYMGVPWVQAPSEGEAQAAYMARRGHC 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVMEF-----EVAKILEELNL-TMDQFI 173
+AV S+D DSL FG+PR +R+L RK+ V+E E+ +L+ L L + +Q I
Sbjct: 171 WAVGSQDYDSLLFGSPRLVRNLATSPKRKVGDEVVELSPEIIELDAVLKSLRLRSREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
DL IL G DY D + GIG Q ALKLI + GS+E +L+ + R P D P E +R F
Sbjct: 231 DLAILLGTDYNPDGVPGIGPQRALKLIWEFGSLEKLLDTVLRG-VTFPID-PV-EIKRFF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V K PD+ L +FLV E+ F +RV +A+E++K A K L+S
Sbjct: 288 LNPPVTDTYTTDVTK---PDDAKLRDFLVHEHDFGEERVERALERLKKAMGKLRTSALDS 344
Query: 293 FF 294
FF
Sbjct: 345 FF 346
>gi|443924990|gb|ELU43928.1| FEN-1 endonuclease [Rhizoctonia solani AG-1 IA]
Length = 532
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 148/229 (64%), Gaps = 34/229 (14%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGE TSHL G F RT+R+++ G+KP YVFDG+PPDLK L+KR+ R A +D
Sbjct: 53 MLTNEAGETTSHLMGFFYRTLRMVDHGIKPAYVFDGKPPDLKSGVLSKRFEGRQKAKEDG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVP-------------------- 100
EA E G ED+EKF++RTV+VT++HN++C++LLKLMG+P
Sbjct: 113 EEAKEVGTAEDVEKFARRTVRVTREHNEECRKLLKLMGIPCVVVSNIVLIHARAQLANTS 172
Query: 101 VVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAK 160
+V+APSEAEAQCA L + G+VYA SEDMD+LTF AP RHL ++K P+ E + K
Sbjct: 173 IVQAPSEAEAQCAELARGGKVYAAGSEDMDTLTFNAPVLYRHLTFSEAKKAPISEIVLEK 232
Query: 161 ILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 209
LE L + M+Q I+G+G + A KL+++HGS+E +L
Sbjct: 233 ALEGLGMNMEQ--------------PIKGVGPKNAFKLMQEHGSLEEVL 267
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 25/91 (27%)
Query: 212 INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 271
+ R +P+ +P++EA++LF +P+V T +Q++ RV
Sbjct: 428 VRRGGIHVPDYYPWEEAKKLFLQPDV-TPADQVE------------------------RV 462
Query: 272 TKAIEKIKAAKNKSSQGRLESFFKPVANTSA 302
K EK+ N QGRL+ FFK + S+
Sbjct: 463 RKGAEKLTKMLNTKQQGRLDGFFKVTESASS 493
>gi|352681676|ref|YP_004892200.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
gi|350274475|emb|CCC81120.1| flap-structure endonuclease [Thermoproteus tenax Kra 1]
Length = 346
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 179/304 (58%), Gaps = 19/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+EAG++P+YVFDG+PP+LK++E+ R + + A + +A
Sbjct: 51 LMDSRGRVTSHLNGLFYRTINLVEAGIRPVYVFDGKPPELKRREIEARRAAKEKAREQMA 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A G E++ K++KR V +T +D K LL MG+P V+APSE EAQ A + G
Sbjct: 111 KAAAEGKTEEVAKYAKRVVYITDSMAEDAKALLTAMGIPWVQAPSEGEAQAAHMAAKGSA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRK-------IPVMEFEVAKILEELNL-TMDQFI 173
+ S+D DSL FGAPR +R+L S RK +P E+ L L L + +Q I
Sbjct: 171 WGAGSQDYDSLLFGAPRLVRNLAVSSRRKVGEEYVEVPPEVIELESALRALKLKSREQLI 230
Query: 174 DLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARR 230
DL IL G DY D + G+G Q ALK+I++HGS+E L + + +WP E +R
Sbjct: 231 DLAILLGTDYNPDGVPGVGPQRALKIIQEHGSLENALRTVLKA-----VEWPVDPLEIKR 285
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
+F P + ++++ PD + LV E+ F+ +RV K +E+++ A ++S L
Sbjct: 286 MFLSPPAT---DNYRVEFREPDVAEVYRILVEEHDFSRERVEKGLERLRKALSRSRTSSL 342
Query: 291 ESFF 294
++FF
Sbjct: 343 DAFF 346
>gi|330835718|ref|YP_004410446.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
gi|329567857|gb|AEB95962.1| flap endonuclease-1 [Metallosphaera cuprina Ar-4]
Length = 301
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 21/306 (6%)
Query: 4 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 63
N G++TSHL G+F RT+ LLE G+ PIYVFDG+PP++K QEL R + +A L A
Sbjct: 2 NREGKITSHLNGLFYRTVNLLEQGVIPIYVFDGKPPEIKAQELENRRKLKEEAMKKLERA 61
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 123
E G E++ K+S+ T ++T ++ KRLL LMG+P V+APSE EA+ A + G VYA
Sbjct: 62 KEEGKIEEVRKYSQMTSRLTSSMANEGKRLLSLMGIPTVQAPSEGEAEAAYMNSQGLVYA 121
Query: 124 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFID 174
AS+D DSL FGA R +R+L RK+P + E +L++L +T D+ ID
Sbjct: 122 AASQDYDSLLFGATRLIRNLTISGKRKLPNKDAYVEVKPEVIEADLLLKKLGITRDELID 181
Query: 175 LCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPE-DWPYQEARRLF 232
+ IL G DY D I+GIG + A KLI+ + I E+I+++ + + D+ Y++ R +F
Sbjct: 182 IAILIGTDYNPDGIKGIGPKRAYKLIKTYKRI----EDIDKKEFDLELIDFDYKKIREMF 237
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA----KNKSSQG 288
PEVV +E L + + +G+++FLV EN F+ DRV A+E+++ A K Q
Sbjct: 238 LRPEVVLPKEPLDL--GDVNVQGVVDFLVKENDFSEDRVVAALERLQRAMREVKESKRQT 295
Query: 289 RLESFF 294
L+ +F
Sbjct: 296 GLDQWF 301
>gi|62203342|gb|AAH92837.1| Zgc:110269 [Danio rerio]
gi|182888906|gb|AAI64364.1| Zgc:110269 protein [Danio rerio]
Length = 333
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 165/297 (55%), Gaps = 37/297 (12%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
S L G+F RT+ LE +KP++V DG+PP+ K+ L KR ++ A N+E
Sbjct: 36 SPLAGLFYRTLAFLEHDIKPVFVLDGKPPNQKRAVLEKRAQSTGWSSSQGPNTGSAFNQE 95
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
C RLL LMGVP ++AP EAEA CA L K G V AVASEDMD
Sbjct: 96 -------------------CLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMD 136
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+L FG LR L + R + E+ + K+LE L L ++F+DLCIL GCDYCD I G+
Sbjct: 137 TLAFGGTVLLRQLN--AKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGL 194
Query: 191 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 250
G ALKLI++H +IE ++E++NR+ + IP +W Y++AR+LF E + D + WS
Sbjct: 195 GPSRALKLIKEHHTIEGVMEHVNRKTHPIPLNWQYEDARKLFFETPKIDDP---VLAWSG 251
Query: 251 PDEEGLINFLVSENGFNSDRVTKAIEK-------------IKAAKNKSSQGRLESFF 294
PDEEGL+ FL E +RV ++K + ++ Q RLE FF
Sbjct: 252 PDEEGLVQFLCKEKPLKEERVRGRMKKFRETLLKRRKQREVNVQMGQTRQSRLEDFF 308
>gi|341583087|ref|YP_004763579.1| flap endonuclease-1 [Thermococcus sp. 4557]
gi|340810745|gb|AEK73902.1| flap endonuclease-1 [Thermococcus sp. 4557]
Length = 341
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 23/304 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F R I L+EAG+KP YVFDG+PP+ KK+E+ KR R +A +
Sbjct: 47 LMDSRGRITSHLSGLFYRNINLMEAGIKPAYVFDGKPPEFKKKEIEKRREAREEAKEKWY 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E GN E+ +K++ R +V + +D KRLL+LMG+PV++APSE EAQ A + +V
Sbjct: 107 EALERGNLEEAKKYAMRATRVNEGLINDAKRLLELMGIPVIQAPSEGEAQAAYMAARKKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R++ RK+P V ++L+EL + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNVTITGRRKLPGKNVYVEVRPELIVLEEVLKELGIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLI-RQHGSIETILENINRERYQIPEDWPYQEARR 230
I++ IL G DY I+GIG + AL ++ R ++ ++ + Y I E
Sbjct: 227 IEMAILVGTDYNPGGIKGIGPKKALTIVKRTKDPLKKYNKDSEVDLYAIKE--------- 277
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P VTDE +L KW PDEEG++ FL E+ F+ +RV +E++K A Q L
Sbjct: 278 FFLNPP-VTDEYEL--KWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQATL 334
Query: 291 ESFF 294
ES+F
Sbjct: 335 ESWF 338
>gi|390961742|ref|YP_006425576.1| flap endonuclease-1 [Thermococcus sp. CL1]
gi|390520050|gb|AFL95782.1| flap endonuclease-1 [Thermococcus sp. CL1]
Length = 341
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 177/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G F RTI L+EAG+KP YVFDG+PP+ K++E+ KR R A +
Sbjct: 47 LMDSRGRITSHLSGFFYRTINLMEAGIKPAYVFDGKPPEFKRKEIEKRREAREKAEERWH 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +K++ R +V + +D K+LL+LMG+PV++APSE EAQ A + +V
Sbjct: 107 EALERGDLEEAKKYAMRATRVNEGLINDAKKLLELMGIPVIQAPSEGEAQAAYMAAKKKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L+EL + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNAYVEVKPELVVLEEVLKELGVDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I++ IL G DY I+GIG + AL ++++ +YQ D +
Sbjct: 227 IEMAILVGTDYNPGGIKGIGPKKALTIVKRTKD--------PLRKYQKDSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P VTDE +L KW PDEEG+I FL E+ F+ +RV IE++K A Q LE
Sbjct: 279 FLNPP-VTDEYEL--KWREPDEEGIIRFLCDEHDFSEERVKNGIERLKKAVKAGKQATLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|375083121|ref|ZP_09730153.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
gi|374742207|gb|EHR78613.1| flap endonuclease-1 [Thermococcus litoralis DSM 5473]
Length = 340
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 179/304 (58%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAEAREEAQEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ +K+++R KV + +D K+LL+LMG+P V+APSE EAQ A + G V
Sbjct: 107 EALARGDLEEAKKYAQRASKVNEMLIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGHV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
+A AS+D DSL FG PR +R+L RK+P + V ++L+EL +T ++
Sbjct: 167 WASASQDYDSLLFGTPRLVRNLTITGKRKLPGKDIYVEVKPELIVLEEVLKELKITREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
++L IL G DY I+GIG + AL++++ +YQ D +
Sbjct: 227 VELAILVGTDYNPGGIKGIGPKKALEIVKYSKD--------PLAKYQKMSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P TDE +L+ W PDEEG++ FL E+ F+ +RV +E++K A Q L+
Sbjct: 279 FLNPP-TTDEYKLE--WKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGRQFTLD 335
Query: 292 SFFK 295
S+FK
Sbjct: 336 SWFK 339
>gi|20094004|ref|NP_613851.1| flap endonuclease-1 [Methanopyrus kandleri AV19]
gi|28380017|sp|Q8TXU4.1|FEN_METKA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19886972|gb|AAM01781.1| 5'-3' exonuclease [Methanopyrus kandleri AV19]
Length = 348
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 189/315 (60%), Gaps = 35/315 (11%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ RT+ L+E G+KP+YVFDG+PPDLK++ L +R ++ +A + L
Sbjct: 47 LMDSRGRITSHLNGLLYRTVNLVEEGIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLR 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A KE+ EK++++ ++ + +D KRLL LMG+P V+APSE EAQCA + + G V
Sbjct: 107 RA---KTKEEREKYARQVARLDESLVEDAKRLLDLMGIPWVQAPSEGEAQCAYMARCGDV 163
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNL-TM 169
+A S+D DSL FG+PR +R++ RK P +M E +L++L L +
Sbjct: 164 WATGSQDYDSLLFGSPRLVRNITIVGKRKHPHTGEIIEVKPEIMRLE--DVLDQLGLESR 221
Query: 170 DQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIE-----TILENINRERYQIPEDW 223
+Q +DL IL G DY D + GIG + AL+LIR++GS++ I I R PE
Sbjct: 222 EQLVDLAILLGTDYNPDGVPGIGPKRALQLIRKYGSLDELKDTDIWPKIERHLPVEPE-- 279
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA-- 281
+ RRLF EPEV D E + W PDEEGL+ FLV E F+ DRV +A+E++K A
Sbjct: 280 ---KLRRLFLEPEVTDDYE---LDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQ 333
Query: 282 --KNKSSQGRLESFF 294
+ Q L++FF
Sbjct: 334 ELRKGGRQETLDAFF 348
>gi|18977786|ref|NP_579143.1| flap endonuclease-1 [Pyrococcus furiosus DSM 3638]
gi|397651906|ref|YP_006492487.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
gi|28380014|sp|O93634.1|FEN_PYRFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|6980604|pdb|1B43|A Chain A, Fen-1 From P. Furiosus
gi|6980605|pdb|1B43|B Chain B, Fen-1 From P. Furiosus
gi|4102602|gb|AAD01514.1| endo/exonuclease [Pyrococcus furiosus DSM 3638]
gi|18893531|gb|AAL81538.1| flap structure-specific endonuclease [Pyrococcus furiosus DSM 3638]
gi|393189497|gb|AFN04195.1| flap endonuclease-1 [Pyrococcus furiosus COM1]
Length = 340
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/304 (41%), Positives = 178/304 (58%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP+YVFDG+PP+ KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWR 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G E+ K+++R +V + +D K+LL+LMG+P+V+APSE EAQ A + G V
Sbjct: 107 EALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L+EL LT ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL+++R ++Q D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGLKKALEIVRHSKD--------PLAKFQKQSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P VTD L W PDEEG++ FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPP-VTDNYNLV--WRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLE 335
Query: 292 SFFK 295
S+FK
Sbjct: 336 SWFK 339
>gi|225543341|ref|NP_001017611.2| probable flap endonuclease 1 homolog [Danio rerio]
gi|317374871|sp|B0UXL7.1|FEN1B_DANRE RecName: Full=Probable flap endonuclease 1 homolog; Short=FEN-1
homolog; AltName: Full=Flap structure-specific
endonuclease 1 homolog
Length = 350
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 120/297 (40%), Positives = 164/297 (55%), Gaps = 37/297 (12%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
S L G+F RT+ LE +KP++V DG+PP K+ L KR ++ A N+E
Sbjct: 53 SPLAGLFYRTLAFLEHDIKPVFVLDGKPPHQKRAVLEKRAQSTGWSSSQSPNTGSAFNQE 112
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
C RLL LMGVP ++AP EAEA CA L K G V AVASEDMD
Sbjct: 113 -------------------CLRLLHLMGVPCIKAPGEAEALCAHLAKIGTVNAVASEDMD 153
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+L FG LR L + R + E+ + K+LE L L ++F+DLCIL GCDYCD I G+
Sbjct: 154 TLAFGGTVLLRQLN--AKRDSEITEYSLPKLLEALQLKYEEFVDLCILLGCDYCDKIGGL 211
Query: 191 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 250
G ALKLI++H +IE ++E++NR+ + IP +W Y++AR+LF E + D + WS
Sbjct: 212 GPSRALKLIKEHHTIEGVMEHVNRKTHPIPLNWQYKDARKLFFETPKIDDP---VLAWSE 268
Query: 251 PDEEGLINFLVSENGFNSDRVTKAIEK-------------IKAAKNKSSQGRLESFF 294
PDEEGL+ FL E +RV ++K + ++ Q RLE FF
Sbjct: 269 PDEEGLVQFLCKEKPLKEERVRGRMKKFREMLLKRRKQREVNMQMGQTRQSRLEDFF 325
>gi|440491836|gb|ELQ74443.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 335
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 170/286 (59%), Gaps = 12/286 (4%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSH+ G F + I L E G+KP++VFDG+PP +K +E+A+R +R DA + +EA E +K
Sbjct: 58 TSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKDAAEKYSEAEEQMDK 117
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+EK+ KR +K+ K+H DD K LL MGV + +EAEA CAALC+ G V V +EDM
Sbjct: 118 VKMEKYDKRKLKIGKEHTDDIKSLLDAMGVAYTISENEAEAFCAALCRKGIVDYVCTEDM 177
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+L F AP L++ + S V E+ + +IL ++ L D+F+DLCIL GCDY +I+G
Sbjct: 178 DALCFRAPVLLKNFVKDS-----VAEYRLDEILRDMKLEFDEFVDLCILLGCDYAGTIKG 232
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
IG A LIR+H SIE I++ + Q+ D+ Y++AR F + + + I W
Sbjct: 233 IGPMKAETLIRKHRSIENIVKEL-----QVT-DYEYEKARETFLNMKNNVEVGFVGIDWQ 286
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
D + FL E F+ R+ +++ + +NK Q RL FK
Sbjct: 287 KYDRNKVFEFL-KEKNFDERRINNGLDRYEKCRNKKEQSRLSDMFK 331
>gi|159040632|ref|YP_001539884.1| flap endonuclease-1 [Caldivirga maquilingensis IC-167]
gi|189044441|sp|A8M9L3.1|FEN_CALMQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157919467|gb|ABW00894.1| XPG I [Caldivirga maquilingensis IC-167]
Length = 350
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/305 (41%), Positives = 182/305 (59%), Gaps = 18/305 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RTI LLE G+KP+YVFDG+PP+LK E+ KR R A +D
Sbjct: 51 LMDSQGRVTSHLSGLLYRTINLLEYGIKPVYVFDGKPPELKLIEIEKRRRVREKAVEDWI 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G K + K+++R + +T D+ KRLL MGVP V+APSE EAQ A + G V
Sbjct: 111 KAVEEGKKSEARKYAQRALFITSDMVDEAKRLLDSMGVPWVQAPSEGEAQAAYMASKGIV 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNLTM--------DQ 171
+A S+D DS FGAPR +R+L RK+P + EV L ELN + Q
Sbjct: 171 WAAGSQDYDSFLFGAPRLVRNLTISGRRKLPGRDEYVEVTPELIELNDVLKALRLRDRGQ 230
Query: 172 FIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
IDL IL G DY + I GIG Q AL+LI+++GS++ ++ + + Q P D P++ R
Sbjct: 231 LIDLAILLGTDYNPEGIPGIGPQRALRLIQEYGSLDKLMNTVLKN-AQFPVD-PFK-IRE 287
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKS-SQGR 289
F P V +++ +K+ P+E+ ++ LV E+ F+ DRV A+E+++ + K+
Sbjct: 288 FFLNPPVT---QEVNVKFKEPNEDEVVRLLVEEHDFSQDRVKNALERLRKSMGKAKGSTT 344
Query: 290 LESFF 294
L+SFF
Sbjct: 345 LDSFF 349
>gi|332796311|ref|YP_004457811.1| XPG I domain-containing protein [Acidianus hospitalis W1]
gi|332694046|gb|AEE93513.1| XPG I domain protein [Acidianus hospitalis W1]
Length = 344
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/307 (41%), Positives = 184/307 (59%), Gaps = 18/307 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI LLE G+ PIYVFDG+PP+LK QEL +R + +A L
Sbjct: 42 LMDSQGRVTSHLSGIFYRTISLLEEGVIPIYVFDGKPPELKAQELERRRKIKEEAEKKLE 101
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G ++++K+S+ ++T ++ KRLL+ MG+PVV+APSE EA+ A LC G
Sbjct: 102 KAKEEGETKELKKYSQMATRLTNDMAEEGKRLLEAMGIPVVQAPSEGEAEAAYLCSQGYT 161
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FGA + +R+L RK+P + E+ +L++ +T +Q
Sbjct: 162 WAAASQDYDSLLFGANKLIRNLTLTGKRKLPKKDVYVEIKPELIELEDLLKKFGITREQL 221
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G DY D I+GIG TAL++I+++G IE +E +Y + D E R +
Sbjct: 222 VDIGILIGTDYDPDGIKGIGPVTALRIIKKYGKIEKAVEKGELPKYIL--DLNINEIRSI 279
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQ 287
F P VV E L +K P+EE + L+ E+ F+ DRVT IE++ K AK S Q
Sbjct: 280 FLNPPVVKPESSLDLK--EPNEEEIKKILIDEHNFSEDRVTNGIERLIKAGKEAKGASRQ 337
Query: 288 GRLESFF 294
L+ +F
Sbjct: 338 SGLDQWF 344
>gi|28380021|sp|Q980U8.2|FEN_SULSO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 22/309 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L
Sbjct: 47 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G E++ K+S+ ++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G
Sbjct: 107 RAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLS 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
+A AS+D D++ FGA R +R+L RK+P ++E E+ +L++L +T +
Sbjct: 167 WAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITRE 224
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G DY D IRGIG + ALK+I+++G IE +E + I ++ E R
Sbjct: 225 QLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIR 282
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKS 285
LF P+VV EE L + + P+ E +IN LV E+ F+ +RV IE+ IK AK S
Sbjct: 283 GLFLNPQVVKPEEALDL--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGAS 340
Query: 286 SQGRLESFF 294
Q L+ +F
Sbjct: 341 RQTGLDRWF 349
>gi|116668192|pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 346
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 22/309 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L
Sbjct: 44 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLE 103
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G E++ K+S+ ++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G
Sbjct: 104 RAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLS 163
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
+A AS+D D++ FGA R +R+L RK+P ++E E+ +L++L +T +
Sbjct: 164 WAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITRE 221
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G DY D IRGIG + ALK+I+++G IE +E + I ++ E R
Sbjct: 222 QLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIR 279
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKS 285
LF P+VV EE L + + P+ E +IN LV E+ F+ +RV IE+ IK AK S
Sbjct: 280 GLFLNPQVVKPEEALDL--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGAS 337
Query: 286 SQGRLESFF 294
Q L+ +F
Sbjct: 338 RQTGLDRWF 346
>gi|119719220|ref|YP_919715.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|166973708|sp|A1RWY2.1|FEN_THEPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|119524340|gb|ABL77712.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 346
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 19/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +E G+KP+YVFDG+PP+LK++EL +RY + +A
Sbjct: 49 LLDAQGNVTSHLNGLFYRTINYIELGIKPVYVFDGRPPELKQKELERRYQIKVEAEKKYR 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ ++++T ++T D K LL+ MGVP VEAPSE EAQ A + K G
Sbjct: 109 EAIERGDLEEARIYAQQTSRLTAAMVHDAKLLLRYMGVPYVEAPSEGEAQAAYMVKKGDA 168
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ ++L +T Q
Sbjct: 169 WASGSQDFDSLLFGSPRLVRNLAITGKRKLPRKDVYVEVKPEIVELEELLRVHGITHQQL 228
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+ + IL G DY + RGIG + ALKL+++ E I ++ + D P ++ L
Sbjct: 229 VVIGILVGTDYAPEGARGIGVKKALKLVKELKDPEKIFRSV-----EWSSDVPPEKILEL 283
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRL 290
F PE VTD +L W PD+E +I LV + F+ +RVT A++++ KA K Q L
Sbjct: 284 FLHPE-VTDSYELT--WKEPDKEKVIELLVERHQFSMERVTNALDRLEKAVKTHFKQQSL 340
Query: 291 ESFF 294
ES+F
Sbjct: 341 ESWF 344
>gi|256810959|ref|YP_003128328.1| flap endonuclease-1 [Methanocaldococcus fervens AG86]
gi|256794159|gb|ACV24828.1| flap structure-specific endonuclease [Methanocaldococcus fervens
AG86]
Length = 326
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 186/296 (62%), Gaps = 18/296 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F +TI LLE + PI+VFDG+PP LK++ R + A +
Sbjct: 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKFRKEMKEKAELKMK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E + E+ K++KR +T + ++CK LL LMG+P VEAPSE EAQ + + K G V
Sbjct: 107 EAIEKEDFEEAAKYAKRVSYLTPKIVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV S+D D+L +GAPR +R+L +++++P + E+ ++LE+L +++D ID+ I G
Sbjct: 167 WAVVSQDYDALLYGAPRVVRNLT--TTKEMPEL-IELNEVLEDLRISLDDLIDIAIFIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + A +L+R + E + + + Y+E RR+FKEP+ VTD
Sbjct: 224 DYNPGGVKGIGFKRAYELVRSGVAKEVLKKEVEN----------YEEIRRIFKEPK-VTD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA-AKNKSSQGRLESFFK 295
L +K P++EG+I FLV EN FN +RV K ++++ + +NK+ Q L+++FK
Sbjct: 273 NYSLSLK--LPNKEGIIKFLVDENDFNYERVKKHVDRLYSLIENKTKQKTLDAWFK 326
>gi|384433639|ref|YP_005642997.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
gi|261601793|gb|ACX91396.1| flap structure-specific endonuclease [Sulfolobus solfataricus 98/2]
Length = 351
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 186/309 (60%), Gaps = 22/309 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L
Sbjct: 49 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLE 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G E++ K+S+ ++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G
Sbjct: 109 RAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLS 168
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
+A AS+D D++ FGA R +R+L RK+P ++E E+ +L++L +T +
Sbjct: 169 WAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITRE 226
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G DY D IRGIG + ALK+I+++G IE +E + I ++ E R
Sbjct: 227 QLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIR 284
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKS 285
LF P+VV EE L + + P+ E +IN LV E+ F+ +RV IE+ IK AK S
Sbjct: 285 GLFLNPQVVKPEEALDL--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGAS 342
Query: 286 SQGRLESFF 294
Q L+ +F
Sbjct: 343 RQTGLDRWF 351
>gi|261402763|ref|YP_003246987.1| flap endonuclease-1 [Methanocaldococcus vulcanius M7]
gi|261369756|gb|ACX72505.1| flap structure-specific endonuclease [Methanocaldococcus vulcanius
M7]
Length = 326
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 186/296 (62%), Gaps = 18/296 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE+TS G+F +TI LLE + PI+VFDG+PP LK++ R + A + +
Sbjct: 47 LKNKKGEITSAYNGIFYKTIHLLENDITPIWVFDGEPPKLKEKTRKMRRHMKEQAEEKMK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ N +++ KF+KR +T + D+CK LL LMG+P V APSE EAQ + + K G V
Sbjct: 107 EAMKKENLDEVAKFAKRASYLTPKIVDNCKYLLGLMGIPYVNAPSEGEAQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV S+D DSL +GAPR +R+L +++++P + + +LEEL +++D ID+ IL G
Sbjct: 167 WAVVSQDYDSLLYGAPRVVRNLT--TTKEMPEL-INLDDVLEELRISLDDLIDIAILMGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + A +L++ + + + + + Y+E R++FKEP+ +TD
Sbjct: 224 DYNPGGVKGIGFKRAYELVKSGVAKDVLKKEVEN----------YEEIRKIFKEPK-ITD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA-AKNKSSQGRLESFFK 295
E + ++ P++EG+I FLV EN FN +RV K ++++ NK+ Q L+++FK
Sbjct: 273 EYSVNLR--LPNKEGIIKFLVDENDFNYERVKKHVDRLYTLIANKTKQKTLDAWFK 326
>gi|315230863|ref|YP_004071299.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
gi|315183891|gb|ADT84076.1| flap structure-specific endonuclease [Thermococcus barophilus MP]
Length = 342
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 179/303 (59%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAEAREEAEEKWQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ +K+++R +V +Q +D K+LL+LMG+P V+APSE EAQ A + G+V
Sbjct: 107 EALARGDLEEAKKYAQRASRVNEQLIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
+A AS+D DSL FGAPR +R+L RK+P + V ++L+EL + ++
Sbjct: 167 WASASQDYDSLLFGAPRLVRNLTITGRRKLPGKDVYVEVKPELIVLEEVLKELKIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+G+G + AL+++R ++YQ D +
Sbjct: 227 IELAILVGTDYNPGGIKGVGPKKALEIVRYSKD--------PLKKYQKMSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D ++ W PDEEG++ FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPVTDD---YKLVWKMPDEEGILKFLCDEHDFSEERVKNGLERLKKAIRAGKQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|429965038|gb|ELA47035.1| hypothetical protein VCUG_01480 [Vavraia culicis 'floridensis']
Length = 335
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 169/289 (58%), Gaps = 12/289 (4%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSH+ G F + I L E G+KP++VFDG+PP +K +E+A+R +R +A + +EA E +K
Sbjct: 58 TSHISGFFYKIINLAEIGIKPLFVFDGKPPQVKSEEIARRNERRKNAAEKYSEAEEQMDK 117
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
++EK+ KR +K+ K+H D+ K LL MGV + +EAEA CA LC+ G V V +EDM
Sbjct: 118 VEMEKYDKRKLKIGKEHTDEIKLLLDAMGVTYTISENEAEAFCATLCRKGIVDYVCTEDM 177
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+L F AP L++ + K V E+ + +IL ++ L F+DLCIL GCDY +I+G
Sbjct: 178 DALCFRAPVLLKNFV-----KDTVAEYRLDEILRDMKLEFSAFMDLCILLGCDYAGTIKG 232
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWS 249
IG A LIR+HG+IE I++ ++ D+ Y++AR F + D + I W
Sbjct: 233 IGPMKAETLIRRHGNIENIVKELD------ITDYEYEKARETFLSMKNNVDVGFVGIDWQ 286
Query: 250 APDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298
D + FL E F+ R+ +++ + +NK Q RL FK A
Sbjct: 287 KYDRSRVFEFL-KEKNFDERRINNGLDRYEKCRNKREQSRLSDMFKKRA 334
>gi|15669635|ref|NP_248448.1| flap endonuclease-1 [Methanocaldococcus jannaschii DSM 2661]
gi|17432937|sp|Q58839.1|FEN_METJA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|157829719|pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|157829720|pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
gi|1592090|gb|AAB99454.1| DNA repair protein RAD2 (rad2) [Methanocaldococcus jannaschii DSM
2661]
Length = 326
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 183/296 (61%), Gaps = 18/296 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F +TI LLE + PI+VFDG+PP LK++ R + A +
Sbjct: 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ + E+ K++KR +T + ++CK LL LMG+P VEAPSE EAQ + + K G V
Sbjct: 107 EAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV S+D D+L +GAPR +R+L +++++P + E+ ++LE+L +++D ID+ I G
Sbjct: 167 WAVVSQDYDALLYGAPRVVRNLT--TTKEMPEL-IELNEVLEDLRISLDDLIDIAIFMGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + A +L+R + + + + + Y E +R+FKEP+ VTD
Sbjct: 224 DYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEY----------YDEIKRIFKEPK-VTD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFK 295
L +K PD+EG+I FLV EN FN DRV K ++K+ NK+ Q L+++FK
Sbjct: 273 NYSLSLK--LPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326
>gi|118575473|ref|YP_875216.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
gi|166973696|sp|A0RU95.1|FEN_CENSY RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|118193994|gb|ABK76912.1| 5'-3' exonuclease [Cenarchaeum symbiosum A]
Length = 340
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 173/303 (57%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VTSHL G+ R L G+KP+YVFDG+PP LK E+ +R + + A A
Sbjct: 47 LTDARGRVTSHLSGLLYRNASFLSMGIKPVYVFDGRPPTLKSAEIERRRNVKKGAAVKYA 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AV+AGN +D K++++T + DD K++LKL G+P ++APSE EA A L ++G
Sbjct: 107 AAVDAGNMDDARKYAQQTTSMRDGMVDDSKQILKLFGIPYIDAPSEGEATAAYLTQTGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF---------EVAKILEELNLTMDQF 172
YA AS+D DS+ FGA R +R+ + RKIP E K L L+LT +Q
Sbjct: 167 YASASQDFDSVLFGAKRLVRNFTNSGRRKIPNRNMYVDVQPEIIETEKTLTTLDLTREQL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G D+ D IG +TALKL+ +HG +E I I E + Y E R++
Sbjct: 227 VDVGILIGTDFNPDGFERIGPKTALKLVHEHGRLEDI-PRIQDELGSV----SYAEIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F EPE ++I++ A D +G+ +LV E F+ DRV A+ +++ A K SQ L+
Sbjct: 282 FLEPE---SPGNIEIEFGATDYDGITKYLVGERSFSEDRVAAALNRLRRALEKRSQN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|146302997|ref|YP_001190313.1| flap endonuclease-1 [Metallosphaera sedula DSM 5348]
gi|145701247|gb|ABP94389.1| flap endonuclease 1 [Metallosphaera sedula DSM 5348]
Length = 300
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 181/305 (59%), Gaps = 20/305 (6%)
Query: 4 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 63
N G+VTSHL G+F RT+ LLE G+ PIYVFDG+PP+LK QEL R + +A L +A
Sbjct: 2 NRQGKVTSHLNGVFYRTVNLLEEGIIPIYVFDGKPPELKAQELENRRKMKEEAEKKLEKA 61
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 123
E+G E++ K+S+ T ++T + K LL+ MGVP V+APSE EA+ A L G YA
Sbjct: 62 KESGKVEEMRKYSQMTSRLTTDMAKESKELLEYMGVPTVQAPSEGEAEAAYLNAKGITYA 121
Query: 124 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFID 174
AS+D DSL FGA + +R+L RK+P + E A +L++L +T +Q ID
Sbjct: 122 SASQDYDSLLFGAEKLIRNLTISGKRKLPNKDVYVEVKPELIETASLLKKLEITREQLID 181
Query: 175 LCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
+ IL G DY D +RGIG + A KLI+ + I ENI++ P + Y++ R LF
Sbjct: 182 IAILVGTDYNPDGVRGIGPKKAYKLIKTYKKI----ENIDKRELPEPIYFDYEKIRELFL 237
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA----KNKSSQGR 289
+P+V L++ S PD +I FLV+EN FN +RV IE+++ A K+ Q
Sbjct: 238 KPQVTLPSTPLEL--SDPDPSKIIQFLVNENDFNEERVRGTIERLQKAMKEIKDIKRQTG 295
Query: 290 LESFF 294
L+ +F
Sbjct: 296 LDQWF 300
>gi|408381751|ref|ZP_11179299.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
gi|407815682|gb|EKF86252.1| flap endonuclease-1 [Methanobacterium formicicum DSM 3637]
Length = 328
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 178/293 (60%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ G +TSH G+ RT L+E G+KPIYVFDGQ LKK+ KR + ++
Sbjct: 47 LKDQNGRITSHFSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERRWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +D KF+ R+ ++ + + K+L+KLMG+P ++A E EAQ + + G
Sbjct: 107 EALEEGRLDDARKFAVRSSRMFPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVAQGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ VAS+D D + FGAPR +++L ++K P + E+ KILE L++T +Q +DL I+ G
Sbjct: 167 WCVASQDYDCMLFGAPRMVKNLTISGTQKTPEI-IELNKILENLSITREQLVDLAIMVGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ I+GIG + LKLI++HG I ILE ++ I D + R +F +V +D
Sbjct: 226 DFNQGIKGIGAKKGLKLIKEHGDIYHILEKLD-----IELDVDPRTLREMFLNHDVDSDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ +KW DEEG++NFL E+ F+ +RV A++K+K K +++Q LE +F
Sbjct: 281 D---LKWQKADEEGIVNFLCGEHDFSQNRVLSAVDKLK--KLQTTQSSLEQWF 328
>gi|15897130|ref|NP_341735.1| flap endonuclease-1 [Sulfolobus solfataricus P2]
gi|284174372|ref|ZP_06388341.1| flap endonuclease-1 [Sulfolobus solfataricus 98/2]
gi|25310048|pir||F90158 DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [imported] -
Sulfolobus solfataricus
gi|13813313|gb|AAK40525.1| DNA repair endo/exonuclease FEN-1 (RAD2) (rad2) [Sulfolobus
solfataricus P2]
Length = 302
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 22/304 (7%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSE 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ ++++ ++ K+LL+ MG+P+V+APSE EA+ A L K G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMDQFIDL 175
+D D++ FGA R +R+L RK+P ++E E+ +L++L +T +Q ID+
Sbjct: 125 QDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEI--LLKKLGITREQLIDI 182
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
IL G DY D IRGIG + ALK+I+++G IE +E + I ++ E R LF
Sbjct: 183 GILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEISKKDI--NFNIDEIRGLFLN 240
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRL 290
P+VV EE L + + P+ E +IN LV E+ F+ +RV IE+ IK AK S Q L
Sbjct: 241 PQVVKPEEALDL--NEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGL 298
Query: 291 ESFF 294
+ +F
Sbjct: 299 DRWF 302
>gi|240103256|ref|YP_002959565.1| flap endonuclease-1 [Thermococcus gammatolerans EJ3]
gi|259645974|sp|C5A639.1|FEN_THEGJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|239910810|gb|ACS33701.1| Flap structure-specific endonuclease (fen) [Thermococcus
gammatolerans EJ3]
Length = 339
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 174/304 (57%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G F RTI L+EAG+KP YVFDG+PP KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFDGEPPAFKKKELEKRREAREEAEEKWH 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G E+ +K++ R K+ + +D K+LL LMGVPVV+APSE EAQ A + +V
Sbjct: 107 EALERGEIEEAKKYAMRATKLNETLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMAAKKRV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L EL + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLRELGIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL ++++ ++YQ D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALTIVKRSKD--------PLKKYQKDSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D E +KW PDEEG++ FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPVTDDYE---LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLE 335
Query: 292 SFFK 295
S+F+
Sbjct: 336 SWFR 339
>gi|300707184|ref|XP_002995811.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
gi|239605030|gb|EEQ82140.1| hypothetical protein NCER_101198 [Nosema ceranae BRL01]
Length = 265
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 141/200 (70%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
TSHL GMF RTIR++E+G+ PI+VFDG+PP+LK EL KR +R A + L A+EA +K
Sbjct: 60 TSHLVGMFYRTIRIVESGVTPIFVFDGKPPELKLYELKKRSDRRDKAEEQLKLAMEAEDK 119
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+IEK +KR +KV+++H +DCKRLLKLMG+P + APSEAEA CA LCK V AVA+EDM
Sbjct: 120 AEIEKQTKRKIKVSEEHVNDCKRLLKLMGIPYLTAPSEAEAFCAYLCKVKCVDAVATEDM 179
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+L FGAP LR + +K V E+ + L EL++ + +FIDLCIL GCDY +S +G
Sbjct: 180 DALPFGAPVLLRGFSSAAVKKTHVTEYNLQTCLGELDMNLPEFIDLCILLGCDYTESGKG 239
Query: 190 IGGQTALKLIRQHGSIETIL 209
IG + + LI+ ++ L
Sbjct: 240 IGPKKGVSLIKNTNVLKRYL 259
>gi|378754698|gb|EHY64727.1| flap endonuclease 1-B [Nematocida sp. 1 ERTm2]
Length = 342
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 170/295 (57%), Gaps = 9/295 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE T+HL G+F +TI L+E G+ P+Y+FDG P+LK+ L +R +++ A DL
Sbjct: 53 LKNKNGETTAHLYGIFYKTINLIEKGIVPVYIFDGLAPELKENILVERRARKEQAERDLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A K K +KRTV+ TK H + + LL MGVP + AP+EAE CAAL + V
Sbjct: 113 QAETESEKM---KHAKRTVRATKYHVESAQALLSAMGVPYMTAPNEAEGFCAALNIANAV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDP-SSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SEDMDSL FG LR+ +K+ VME + ++L++ L +FID+CIL G
Sbjct: 170 NGVVSEDMDSLAFGGKVLLRNFFPALMKKKMAVMEISLDEVLKQTGLDQAEFIDMCILLG 229
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
CDYC +G+G + L+++H SIE I+E+ + + EDWPY EAR +F E
Sbjct: 230 CDYCQKPKGLGPKKVYDLVQEHRSIEKIVESGKIQPGE--EDWPYVEAREIFTSQEA--- 284
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295
+ + P + ++ FLV ENGF+ +V A+ +++A Q L F K
Sbjct: 285 GKPPVFSMALPKADEIVQFLVEENGFDRKKVDTAVARLQAHSKAKKQSSLLVFAK 339
>gi|57641216|ref|YP_183694.1| flap endonuclease-1 [Thermococcus kodakarensis KOD1]
gi|73919352|sp|Q5JGN0.1|FEN_PYRKO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|57159540|dbj|BAD85470.1| flap structure-specific endonuclease [Thermococcus kodakarensis
KOD1]
Length = 340
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/303 (40%), Positives = 176/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G F RTI L+EAG+KP YVFDG+PPD KK+EL KR R +A +
Sbjct: 47 LMDSQGRITSHLSGFFYRTINLMEAGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWY 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +K++ R +V ++ +D K+LL+LMG+PVV+APSE EAQ A + V
Sbjct: 107 EALEKGDLEEAKKYAMRATRVNEELINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L+EL + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL ++++ +YQ D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALTIVKRTKD--------PLAKYQKESDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D E +KW PDEEG++ FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPVTDDYE---LKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|374632950|ref|ZP_09705317.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
gi|373524434|gb|EHP69311.1| flap structure-specific endonuclease [Metallosphaera
yellowstonensis MK1]
Length = 301
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 180/297 (60%), Gaps = 22/297 (7%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RT+ L+E G+ P+YVFDG+PP+LK +EL R + +A L +A E
Sbjct: 5 GRVTSHLNGVFYRTVNLIEEGVIPVYVFDGKPPELKMEELENRRRLKEEAERKLVKAKEL 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ + ++TK ++ K LL MGVP+V APSE EA+ A L +A AS
Sbjct: 65 GKLEEMRKYSQMSSRLTKGMAEESKELLSRMGVPIVNAPSEGEAEAAYLNYKNITFAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 177
+D DSL FGA R +R+L RK+P + E+ ++L +L LT +Q ID+ I
Sbjct: 125 QDYDSLLFGAKRLIRNLTITGKRKLPNKDVYVEIKPEMIELDELLRKLGLTREQLIDVAI 184
Query: 178 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQI-PE--DWPYQEARRLFK 233
L G DY D I+GIG +TA KLIR + SIE I +R ++ PE + Y++ R +F
Sbjct: 185 LIGTDYNPDGIKGIGPKTAYKLIRTYKSIEAI------DRRELNPELIYFDYKKIREIFL 238
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGR 289
+PEVV E L+++ PD+E + + LV E FN +RV A+ ++ KA + S GR
Sbjct: 239 KPEVVEPSESLELR--DPDKEKVTDMLVGEYDFNEERVKNALARLEKAIREVKSLGR 293
>gi|20092799|ref|NP_618874.1| flap endonuclease-1 [Methanosarcina acetivorans C2A]
gi|28380016|sp|Q8TIY5.1|FEN_METAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|19918097|gb|AAM07354.1| FlaP endonuclease-1 [Methanosarcina acetivorans C2A]
Length = 338
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 170/302 (56%), Gaps = 19/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G+VTSHL G+ RT L+EAG+KP+++FDG+PPDLK + L++R R + +
Sbjct: 47 LVNSRGKVTSHLSGLLYRTASLVEAGIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G+ E K+++ + +V ++ +D K LL +MG+P ++AP E EAQ A +
Sbjct: 107 NAKAEGDLEAAYKYAQASSRVDQEIVEDSKYLLGIMGIPWIQAPCEGEAQAAHMVLKKDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
VAS+D DS FGAP+ +R++ RK+P V + L L + DQ
Sbjct: 167 DYVASQDYDSFLFGAPKVVRNMAVTGKRKLPGKNVYVDVELEVIELEETLRALEINRDQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ I G DY + +G +TALKLI++HG I +L + E + R+LF
Sbjct: 227 IDIAICVGTDYNKGLEKVGPKTALKLIKKHGDIHAVLREKDMEIEGL------DRIRKLF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
PEV D E IKW+ PD E LI FL EN F++DRV KA E++KAA + Q L+
Sbjct: 281 THPEVTEDYE---IKWTKPDSEKLIKFLCEENDFSTDRVEKAAERLKAASG-ARQKTLDQ 336
Query: 293 FF 294
+F
Sbjct: 337 WF 338
>gi|307594203|ref|YP_003900520.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
gi|307549404|gb|ADN49469.1| flap structure-specific endonuclease [Vulcanisaeta distributa DSM
14429]
Length = 349
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 178/304 (58%), Gaps = 17/304 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ RTI LE + P+YVFDG+PP+ K E+A+R R +A D
Sbjct: 51 LMDSKGRITSHLSGLLYRTINFLENRIWPVYVFDGKPPEEKTLEIARRRKVREEAMDKWV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ +E G +E+ K+++R + +T +D K+LL+LMG+PVV+A ++ EAQ A + + G+
Sbjct: 111 KLLEEGKREEARKYAQRALFLTDDMVEDAKKLLRLMGIPVVQAMADGEAQAAVIAREGKA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLT-MDQ 171
+A S+D DSL FGAPR +R+L RK+P + E+ ++L+ L L Q
Sbjct: 171 WAAGSQDYDSLLFGAPRLVRNLAITGRRKLPNKDEYIEIKPEIIELNEVLKALKLKDRTQ 230
Query: 172 FIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
IDL IL G D D + GIG Q AL+LI++ G +E +L+ + Q P D P + R
Sbjct: 231 LIDLAILLGTDLNPDGVPGIGPQRALRLIQEFGGLEKLLQGPLKN-AQFPTD-PLK-IRD 287
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P +I++ PDE G++ FLV E+ FN +RV AIE++K A K + L
Sbjct: 288 YFLNPPY---NPNYKIEFGQPDERGIVEFLVHEHDFNEERVRNAIERLKKAMGKRRESTL 344
Query: 291 ESFF 294
+SFF
Sbjct: 345 DSFF 348
>gi|346430351|emb|CCC55608.1| flap endonuclease-1 [uncultured archaeon]
Length = 343
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 173/294 (58%), Gaps = 14/294 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RT+ +E G+K +YVFDG+PP+LK +E+ +R R +A
Sbjct: 50 LMDSHGRITSHLSGLFYRTVNFIEKGLKVVYVFDGKPPELKAKEIEERRRTREEALKMYE 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA GN+E + KF+ R + +D K LL LMGVP VEAPSE EAQ A + G
Sbjct: 110 EARAQGNEELMRKFATRAAFLKNYMVEDSKTLLDLMGVPWVEAPSEGEAQAAYMAARGVT 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+ S+D DSL FG+PR +R+L RK+P + E K+L+ +T +Q
Sbjct: 170 WGSVSQDYDSLLFGSPRLVRNLTVSGRRKLPNKDVYVEISPEMIETEKLLKFYEITREQL 229
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+D+ IL G D+ I+GIG +TALKLI+++G IE I E N + +P++ E R++F
Sbjct: 230 VDIGILVGTDFNIGIKGIGPKTALKLIKKYGKIENIKEVPNLSEF-LPQE-VLSEVRKIF 287
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
EP+ V D + L+ W PDEEG+I FL E F+ DRV A+ +I+ SS
Sbjct: 288 LEPQ-VKDVQGLE--WRQPDEEGVIKFLCDERNFSVDRVKNALTRIRKRPAASS 338
>gi|452209484|ref|YP_007489598.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
gi|452099386|gb|AGF96326.1| Flap structure-specific endonuclease [Methanosarcina mazei Tuc01]
Length = 338
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 169/302 (55%), Gaps = 19/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G+VTSHL G+ RT L+EAG+KP++VFDG+PP++K L +R R + +
Sbjct: 47 LVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A GN E K+++ + KV + +D K LL +MG+P ++AP E EAQ A +
Sbjct: 107 NAKAEGNLEAAYKYAQASSKVDQDIIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---------VMEFEVAKILEELNLTMDQF 172
VAS+D DS FGAP +R+L RK+P + E+ + L+ L + DQ
Sbjct: 167 DCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ I G DY + +G +TALKLI++HG+I +L RE+ E + LF
Sbjct: 227 IDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVL----REKGMEIE--ALDSIKELF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P+V D E IKW PD E LINFL EN F+ DRV KA +++KAA + Q L+
Sbjct: 281 THPDVTDDYE---IKWGKPDSEKLINFLCDENDFSEDRVVKAADRLKAASG-ARQQTLDQ 336
Query: 293 FF 294
+F
Sbjct: 337 WF 338
>gi|289192094|ref|YP_003458035.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
gi|288938544|gb|ADC69299.1| flap structure-specific endonuclease [Methanocaldococcus sp.
FS406-22]
Length = 326
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 184/296 (62%), Gaps = 18/296 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F +TI LLE + PI+VFDG+PP LK++ R + A +
Sbjct: 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ + E+ K++KR +T + ++CK LL LMG+P VEAPSE EAQ + + K G V
Sbjct: 107 EAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV S+D D+L +G+PR +R+L +++++P + E+ ++LE+L +++D ID+ I G
Sbjct: 167 WAVVSQDYDALLYGSPRVVRNLT--TTKEMPEL-IELNEVLEDLRISLDDLIDIAIFMGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + A +L+R + + + + + Y+E +R+FKEP+ VTD
Sbjct: 224 DYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEN----------YEEIKRIFKEPK-VTD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFK 295
L +K PD+EG+I FLV EN F+ +RV K ++K+ NK+ Q L+++FK
Sbjct: 273 SYSLSLK--LPDKEGIIKFLVDENDFSYERVKKHVDKLYNLIANKTKQKTLDAWFK 326
>gi|304372804|ref|YP_003858300.1| flap endonuclease-1 [Sulfolobus islandicus M.16.27]
Length = 351
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 183/307 (59%), Gaps = 18/307 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L
Sbjct: 49 LMDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLE 108
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G
Sbjct: 109 RAKSEGKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFS 168
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DS+ FGA R +R+L RK+P + E +L++L +T +Q
Sbjct: 169 WAAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQL 228
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D I+GIG + ALK+I+++G IE +E + I + E R L
Sbjct: 229 IDISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSL 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQ 287
F +P+VV EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q
Sbjct: 287 FLKPQVVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQ 344
Query: 288 GRLESFF 294
L+ +F
Sbjct: 345 TGLDRWF 351
>gi|320101275|ref|YP_004176867.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
gi|319753627|gb|ADV65385.1| flap endonuclease 1 [Desulfurococcus mucosus DSM 2162]
Length = 356
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 179/297 (60%), Gaps = 17/297 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G +TSHL G+F RTI ++EAG+KP+YVFDG+PP+LK +E+ +R R +A
Sbjct: 51 LMDGSGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAKEIERRRVVREEAARKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV+AG+ E +++ + ++T + D K LL MG+P V+AP+E EAQ A + + G
Sbjct: 111 EAVQAGDLESARRYAMMSARLTDEMVRDAKALLDAMGIPWVQAPAEGEAQAAYMARKGDA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DSL FG+PR +R+L RK+P E E+ K+L +L +T +
Sbjct: 171 YASASQDYDSLLFGSPRLVRNLTISGRRKLPRREEYVEVKPEVIELDKLLSKLGVTYENL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G DY D GIG + AL+L++ +GS+E I + + + P + ++
Sbjct: 231 VDIGILLGTDYNPDGFEGIGPKKALQLVKVYGSVEKIPKPLLKS----PVEVDVAAIKKY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
F +P+ VTD +L+ W PD E + LV E+ F+++RV A+++ A ++ +G
Sbjct: 287 FLQPQ-VTDNYRLE--WRNPDPEAVKRILVGEHDFSAERVNAALDRYLKAFRENIRG 340
>gi|21227008|ref|NP_632930.1| flap endonuclease-1 [Methanosarcina mazei Go1]
gi|28380015|sp|Q8PYF6.1|FEN_METMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|20905326|gb|AAM30602.1| FLAP endonuclease-1 [Methanosarcina mazei Go1]
Length = 338
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 169/302 (55%), Gaps = 19/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G+VTSHL G+ RT L+EAG+KP++VFDG+PP++K L +R R + +
Sbjct: 47 LVNSQGKVTSHLSGLLYRTASLVEAGIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A GN E K+++ + KV + +D K LL +MG+P ++AP E EAQ A +
Sbjct: 107 NAKAEGNLEAAYKYAQASSKVDQDIIEDSKYLLDIMGIPWIQAPCEGEAQAAHMVLKKDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---------VMEFEVAKILEELNLTMDQF 172
VAS+D DS FGAP +R+L RK+P + E+ + L+ L + DQ
Sbjct: 167 DCVASQDYDSFLFGAPTVVRNLAATGKRKLPGKNVYVDVELEMIELEETLDSLGINRDQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ I G DY + +G +TALKLI++HG+I ++ RE+ E + LF
Sbjct: 227 IDIAICVGTDYNKGLEKVGPKTALKLIKKHGNIHAVI----REKGMEIE--ALDSIKELF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P+V D E IKW PD E LINFL EN F+ DRV KA +++KAA + Q L+
Sbjct: 281 THPDVTDDYE---IKWGKPDSEKLINFLCDENDFSEDRVVKAADRLKAASG-ARQQTLDQ 336
Query: 293 FF 294
+F
Sbjct: 337 WF 338
>gi|218884379|ref|YP_002428761.1| flap endonuclease-1 [Desulfurococcus kamchatkensis 1221n]
gi|322812496|pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From
Hyperthermophilic Archaeon Desulfurococcus Amylolyticus
gi|218765995|gb|ACL11394.1| Flap structure-specific endonuclease [Desulfurococcus kamchatkensis
1221n]
Length = 363
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 182/306 (59%), Gaps = 20/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI ++EAG+KP+YVFDG+PP+LK +E+ +R + + +A
Sbjct: 61 LMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYE 120
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV++G+ E +++ + K+T++ D K LL MG+P V+AP+E EAQ A + K G
Sbjct: 121 EAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDA 180
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DSL FG+P+ +R+L RK+P E+ K+L +L +T++
Sbjct: 181 YASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENL 240
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D GIG + AL+L++ +G IE I + I + P + ++
Sbjct: 241 IDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILKS----PIEVDVIAIKKY 296
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK-IKAAKN--KSSQG 288
F +P+V + +I+W PD + + LV E+ F+ DRV+ A+E+ +KA K + Q
Sbjct: 297 FLQPQVT---DNYRIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQK 353
Query: 289 RLESFF 294
L +F
Sbjct: 354 GLSKWF 359
>gi|385773896|ref|YP_005646463.1| XPG I domain-containing protein [Sulfolobus islandicus HVE10/4]
gi|323478011|gb|ADX83249.1| XPG I domain protein [Sulfolobus islandicus HVE10/4]
Length = 302
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNIIGFSWAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 177
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 178 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 292
VV EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 293 FF 294
+F
Sbjct: 301 WF 302
>gi|229579856|ref|YP_002838255.1| flap endonuclease-1 [Sulfolobus islandicus Y.G.57.14]
gi|238620410|ref|YP_002915236.1| flap endonuclease-1 [Sulfolobus islandicus M.16.4]
gi|284998466|ref|YP_003420234.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|304372803|ref|YP_003858299.1| flap-1 endonuclease [Sulfolobus islandicus L.S.2.15]
gi|385776538|ref|YP_005649106.1| XPG I domain-containing protein [Sulfolobus islandicus REY15A]
gi|228010571|gb|ACP46333.1| XPG I domain protein [Sulfolobus islandicus Y.G.57.14]
gi|238381480|gb|ACR42568.1| XPG I domain protein [Sulfolobus islandicus M.16.4]
gi|284446362|gb|ADB87864.1| Xpg I [Sulfolobus islandicus L.D.8.5]
gi|323475286|gb|ADX85892.1| XPG I domain protein [Sulfolobus islandicus REY15A]
Length = 302
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 177
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 178 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 292
VV EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 293 FF 294
+F
Sbjct: 301 WF 302
>gi|242398519|ref|YP_002993943.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
gi|259645975|sp|C6A1U9.1|FEN_THESM RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|242264912|gb|ACS89594.1| Flap structure-specific endonuclease [Thermococcus sibiricus MM
739]
Length = 340
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP+ KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPEFKKKELEKRAETREEALEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+ G E+ +K+++R K+ + +D K+LL+LMG+P V+APSE EAQ A + G V
Sbjct: 107 IALARGELEEAKKYAQRASKINEILIEDAKKLLELMGIPWVQAPSEGEAQAAYMASKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
+A AS+D DSL FG P+ +R+L RK+P + + +L+EL LT ++
Sbjct: 167 WASASQDYDSLLFGTPKLVRNLTITGKRKLPGKDVYIEVKPELILLEDVLKELKLTREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+G+G + AL++++ +YQ + +
Sbjct: 227 IELAILVGTDYNPGGIKGLGPKKALEIVKYSKD--------PLSKYQKTSEVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P D +++W PDEE +I FL E+ F+ +RV +E++K Q L+
Sbjct: 279 FLNPPTTND---YKLEWKLPDEESIIKFLCDEHDFSEERVKNGLERLKKVTKTGKQFTLD 335
Query: 292 SFFK 295
++FK
Sbjct: 336 TWFK 339
>gi|337283806|ref|YP_004623280.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
gi|334899740|gb|AEH24008.1| flap endonuclease-1 [Pyrococcus yayanosii CH1]
Length = 341
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 176/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP YVFDG+PP KK+EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPAYVFDGKPPAFKKKELEKRREAREEAEERWR 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E GN E+ K+++R +V + +D K+LL+LMG+PV++APSE EAQ A + G V
Sbjct: 107 EALERGNIEEARKYAQRATRVNEALVEDAKKLLELMGIPVIQAPSEGEAQAAYIAAKGAV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P + V ++L+ L + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGKRKLPGKDVYVDVKPELIVLEEVLKALKIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY ++GIG + AL+++R ++Q D +
Sbjct: 227 IELAILVGTDYNPGGVKGIGPKKALEIVRHSKD--------PLAKWQKVSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V + E +KW PDEEG++ FL E+ F+ +RV IE++K A Q LE
Sbjct: 279 FLNPPVTDNYE---LKWKEPDEEGILKFLCDEHDFSEERVKNGIERLKTAVKAGKQVTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|150401914|ref|YP_001325680.1| flap endonuclease-1 [Methanococcus aeolicus Nankai-3]
gi|166973699|sp|A6UX46.1|FEN_META3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|150014617|gb|ABR57068.1| XPG I [Methanococcus aeolicus Nankai-3]
Length = 326
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 179/297 (60%), Gaps = 21/297 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F +TI LL + PI+VFDG+PP+LK + +R + A+ D
Sbjct: 47 LRNSKGEITSPYNGIFYKTIYLLNNEITPIWVFDGKPPELKLKTREERRKVKEKASKDYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A N ED++K++KR + D+CK+LLKLMG+P ++APSE EAQCA + K+G
Sbjct: 107 IAKREENIEDMQKYAKRINYLEPNTVDNCKKLLKLMGIPYIDAPSEGEAQCAHMIKNGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
Y V S+D D+L +GAPR +R++ S++ + +ME E IL+ L++++D ID+ IL G
Sbjct: 167 YCVVSQDYDALLYGAPRTVRNIT-ASNKPLELMEIE--DILKPLDISIDDLIDMAILIGT 223
Query: 182 DY-CDSIRGIGGQTALKLIRQHGSIETI--LENINRERYQIPEDWPYQEARRLFKEPEVV 238
DY I+GIG + AL +I+ E I +EN Y+E + +FK P+VV
Sbjct: 224 DYNIGGIKGIGPKKALTIIKNKKMNEYIKDIEN-------------YEEIKNIFKNPKVV 270
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
D + IK +P+ EGL FL+ EN F+ +R+ +I+K+ K K SQ L+S+F
Sbjct: 271 -DYTKEDIKLKSPNIEGLKEFLIEENDFSPNRILPSIKKLDKLLNEKRSQTSLDSWF 326
>gi|390938891|ref|YP_006402629.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
gi|390191998|gb|AFL67054.1| flap endonuclease 1 [Desulfurococcus fermentans DSM 16532]
Length = 363
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 183/306 (59%), Gaps = 20/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G +TSHL G+F RTI ++EAG+KP+YVFDG+PP+LK +E+ +R + + +A
Sbjct: 61 LMDNSGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYE 120
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV++G+ E +++ + K+T++ D K LL MG+P V+AP+E EAQ A + K G
Sbjct: 121 EAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDA 180
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DSL FG+P+ +R+L RK+P E+ K+L +L +T++
Sbjct: 181 YASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENL 240
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D GIG + AL+L++ +G IE I + + + P + ++
Sbjct: 241 IDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPLLKS----PVEVDVVAIKKY 296
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK-IKAAKN--KSSQG 288
F +P+V + +I+W PD + + LV E+ F+ DRV+ A+E+ +KA K + Q
Sbjct: 297 FLQPQVT---DNYRIEWHTPDPDVVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQK 353
Query: 289 RLESFF 294
L +F
Sbjct: 354 GLSKWF 359
>gi|229581484|ref|YP_002839883.1| flap endonuclease-1 [Sulfolobus islandicus Y.N.15.51]
gi|228012200|gb|ACP47961.1| XPG I domain protein [Sulfolobus islandicus Y.N.15.51]
Length = 302
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 177
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 178 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 292
+V EE L + + P+E+ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 IVKPEETLDL--NEPNEKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 293 FF 294
+F
Sbjct: 301 WF 302
>gi|212224248|ref|YP_002307484.1| flap endonuclease-1 [Thermococcus onnurineus NA1]
gi|226700956|sp|B6YWX4.1|FEN_THEON RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|212009205|gb|ACJ16587.1| flap structure-specific endonuclease [Thermococcus onnurineus NA1]
Length = 341
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 178/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+EAG+KP Y+FDG+PPD KK+EL KR R +A +
Sbjct: 47 LMDSQGRITSHLSGLFYRTINLMEAGIKPAYIFDGKPPDFKKRELEKRREAREEAEEKWY 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +K++ R +V + +D K LL+LMG+PV++APSE EAQ A + +V
Sbjct: 107 EALERGDLEEAKKYAMRATRVNEGLINDAKTLLELMGIPVIQAPSEGEAQAAYMAAKKKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAP+ +R+L RK+P V ++L+EL++ ++
Sbjct: 167 YASASQDYDSLLFGAPKLVRNLTITGRRKLPGKNVYVEVKPELIVLEEVLKELSIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I++ IL G DY I+GIG + AL ++++ ++YQ + +
Sbjct: 227 IEMAILVGTDYNPGGIKGIGPKKALTIVKRTKD--------PLKKYQKESEVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D E +KW PDEEG+I FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPVTDDYE---LKWREPDEEGIIKFLCDEHDFSEERVKNGLERLKKAVKAGKQSTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|297526096|ref|YP_003668120.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
gi|297255012|gb|ADI31221.1| flap structure-specific endonuclease [Staphylothermus hellenicus
DSM 12710]
Length = 350
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/307 (37%), Positives = 181/307 (58%), Gaps = 22/307 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI +LE G+KP YVFDG+PP++K +E+ KR R DA+
Sbjct: 51 LMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAREIEKRRKIREDASKKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E +++ + K+T + D K+LL MG+P ++A +E EAQ A + G
Sbjct: 111 EALRRGDVEAARRYAMMSAKLTDEMVHDAKKLLDAMGIPWIQAVAEGEAQAAYIVGKGDA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FG+PR +R+L RK+P E+ K+LE+L +T +Q
Sbjct: 171 WASASQDYDSLLFGSPRLIRNLTISGRRKLPRKNVYIEIKPEIIELKKLLEKLGITREQL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQI-PEDWPYQEARR 230
I + +L G DY D ++GIG + AL+L++ + +++ IL+ I + + + PE +
Sbjct: 231 IYVALLIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKAIPKTEFPVEPE-----KIVE 285
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK-IKAAKN--KSSQ 287
F P V TD +++W PDE + LV E+ FN +RV A+E+ +KA + +S Q
Sbjct: 286 YFLNPPVTTD---YKLEWKEPDESKIREILVEEHDFNPERVKNAVERLVKAYREHIRSKQ 342
Query: 288 GRLESFF 294
LE++F
Sbjct: 343 MGLEAWF 349
>gi|227828219|ref|YP_002829999.1| flap endonuclease-1 [Sulfolobus islandicus M.14.25]
gi|227460015|gb|ACP38701.1| XPG I domain protein [Sulfolobus islandicus M.14.25]
Length = 302
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +TSHL G+F RTI +LE G+ PIYVFDG+PP+ K +EL +R + +A L A
Sbjct: 5 GRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLERAKSE 64
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G E++ K+S+ ++++ ++ K LL+ MG+P+V+APSE EA+ A L G +A AS
Sbjct: 65 GKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSWAAAS 124
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDLCI 177
+D DS+ FGA R +R+L RK+P + E +L++L +T +Q ID+ I
Sbjct: 125 QDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLIDISI 184
Query: 178 LSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPE 236
L G DY D I+GIG + ALK+I+++G IE +E + I + E R LF +P+
Sbjct: 185 LIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDIT--FNIDEIRSLFLKPQ 242
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQGRLES 292
VV EE L + + P+++ ++N LV+E+ F+ +RV IE+ I+ AK S Q L+
Sbjct: 243 VVKPEETLDL--NEPNDKDIVNILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR 300
Query: 293 FF 294
+F
Sbjct: 301 WF 302
>gi|429217578|ref|YP_007175568.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
gi|429134107|gb|AFZ71119.1| flap structure-specific endonuclease [Caldisphaera lagunensis DSM
15908]
Length = 351
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 180/308 (58%), Gaps = 24/308 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSH+ G+F RTI L+E G+KPIYVFDG+PP++KK+E+ R ++R +
Sbjct: 53 LIDSKGNITSHISGLFYRTINLIEEGVKPIYVFDGKPPEMKKKEIEDRINRRQQYAEKYQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A + G E+ +K+++ + ++ + +D K+LL MG+P V+AP++ EAQ A + K G V
Sbjct: 113 KAKQEGKIEEAKKYAQASTSLSNKMVEDAKQLLTYMGIPWVQAPADGEAQAAYMAKKGDV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA S+D DSL FG+P+ LR+L RK+P E + +L+ L +T +Q
Sbjct: 173 YATGSQDYDSLLFGSPKLLRNLAITGKRKLPNKEEYIEIKPELINLNDMLKALEITREQL 232
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILEN--INRERYQIPEDWPYQEAR 229
I + IL G D+ D +G G +TALK +++H L + +N E I + + Y
Sbjct: 233 IVIGILLGTDFNPDGFKGYGPKTALKYVKEHRDPIKALSSLKVNDEDIDIMKIYEY---- 288
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSS 286
F P +I+W P+EE +I+ LV E+ FN DRV KA+E++K + KS
Sbjct: 289 --FLNP---PSNPNYKIEWRDPNEEKIIDMLVREHDFNDDRVKKALERLKKSFKESVKSK 343
Query: 287 QGRLESFF 294
Q RL+++F
Sbjct: 344 QARLDNWF 351
>gi|91773853|ref|YP_566545.1| flap endonuclease-1 [Methanococcoides burtonii DSM 6242]
gi|121684238|sp|Q12UT1.1|FEN_METBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|91712868|gb|ABE52795.1| FEN1 flap endonuclease with 5'-3' exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 338
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/302 (37%), Positives = 171/302 (56%), Gaps = 19/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G++TSHL G+ R L+EAG+KPI+VFDG+PPD K LAKR+ R AT
Sbjct: 47 LKDSRGQITSHLSGILYRLTSLIEAGVKPIFVFDGKPPDFKSDTLAKRHEVRESATAKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A G +E+ K+++ + KVT++ DD RLL+LMG+P V+APSE EAQ + + + G
Sbjct: 107 DAKAQGLEEEAYKYAQASSKVTREMIDDSVRLLELMGIPYVKAPSEGEAQASYMVQKGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
+ S+D DS FGAP+ +R+L RK+P V L EL +T Q
Sbjct: 167 DYIGSQDYDSFLFGAPQVVRNLTITGKRKLPKKNIYVDVKPEVLSLVDSLGELGITRQQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ + G DY + IG + ALKL+++HG I+ +L+ + ++ + R F
Sbjct: 227 IDIAMCVGTDYNTGLENIGPKRALKLVKEHGDIKVVLKELGKDIEDL------DAKRDFF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V D E +KW PD G+I+ L ++ F+ +RV KA+++++A SQ L+
Sbjct: 281 MNPPVTDDYE---LKWIKPDRAGVIDLLCKKHDFSEERVNKALDRLEANIG-GSQSTLDQ 336
Query: 293 FF 294
+F
Sbjct: 337 WF 338
>gi|410722033|ref|ZP_11361349.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
gi|410597930|gb|EKQ52534.1| flap endonuclease 1 [Methanobacterium sp. Maddingley MBC34]
Length = 328
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 175/293 (59%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ G +TSH G+ RT L+E G+KPIYVFDGQ LKK+ KR + ++
Sbjct: 47 LKDQNGRITSHFSGILYRTSSLVEKGIKPIYVFDGQSSALKKETQQKRREIKEESERKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +D KF+ R+ +++ + + K+L+KLMG+P ++A E EAQ + + G
Sbjct: 107 EALEEGRLDDARKFAVRSSRMSPEIVEGSKKLIKLMGIPYIQAKGEGEAQASYMVARGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ VAS+D D + FGAPR +++L ++ P + E+ KIL L++T +Q +DL I+ G
Sbjct: 167 WCVASQDYDCMLFGAPRMVKNLTISGTQNTPEL-IELEKILGTLDITREQLVDLAIMVGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ I+GIG + LKLI +HG I ILE ++ I D R +F EV +D
Sbjct: 226 DFNQGIKGIGAKKGLKLIEKHGDIFQILEKLD-----IQLDVDPHILRDMFLNHEVDSDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ +KW DE+G+++FL E+ F+ +RV A++K+K K +++Q LE +F
Sbjct: 281 D---LKWQKADEQGIVDFLCGEHDFSENRVLSAVDKLK--KLQTTQSSLEQWF 328
>gi|223477291|ref|YP_002581507.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
gi|214032517|gb|EEB73347.1| Flap structure-specific endonuclease [Thermococcus sp. AM4]
Length = 339
Score = 203 bits (516), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 175/304 (57%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G F RTI L+EAG+KP YVFDG+PP K++EL KR R +A +
Sbjct: 47 LMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFDGEPPAFKRRELEKRREAREEAEEKWH 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +K++ R K+ + +D K+LL LMGVPVV+APSE EAQ A + +V
Sbjct: 107 EALERGDIEEAKKYAMRATKLNETLIEDAKKLLGLMGVPVVQAPSEGEAQAAYMASKKKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAPR +R+L RK+P V ++L+EL + ++
Sbjct: 167 YASASQDYDSLLFGAPRLVRNLTITGRRKLPGKNVYVEVKPELIILEEVLKELGIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL ++++ +YQ D +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALTIVKRSKD--------PLAKYQKMSDVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D E +KW PDEEG+I FL E+ F+ +RV +E++K A Q LE
Sbjct: 279 FLNPPVTDDYE---LKWREPDEEGIIRFLCDEHDFSEERVKNGLERLKKAIKAGKQRTLE 335
Query: 292 SFFK 295
S+F+
Sbjct: 336 SWFR 339
>gi|336122204|ref|YP_004576979.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
gi|334856725|gb|AEH07201.1| Flap structure-specific endonuclease [Methanothermococcus
okinawensis IH1]
Length = 324
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 177/295 (60%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F + I +LE + PI+VFDG+PP+LK + +R + A ++
Sbjct: 47 LRNSKGEITSTYNGIFYKNIYMLENDITPIWVFDGKPPELKHKTREERKKVKEKAMEEYI 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E GN ED++K++KR + + ++ KRLL LMG+P + APSE EAQC+ + K G V
Sbjct: 107 SAKEEGNLEDMQKYAKRINYLEPKVVENSKRLLNLMGIPFINAPSEGEAQCSYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
YAV S+D D+L +GAPR +R++ ++ P+ E+ ++L LN+T+D ID+ IL G
Sbjct: 167 YAVVSQDYDALLYGAPRTVRNI---TASNKPLELIELDEVLGALNITLDNLIDMAILIGT 223
Query: 182 DY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + AL +++ + E I N E Y++ + +FK P+ VTD
Sbjct: 224 DYNIGGVKGIGPKKALDIVKNNKMGEYIK---NIENYEV--------IKNIFKHPK-VTD 271
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
E L K AP+ E L FL+ EN F+ +R+ +++K+ K K SQ +ES+F
Sbjct: 272 EYSL--KLGAPNIEELRKFLIDENNFSENRILPSLKKLEKIVNKKKSQTTIESWF 324
>gi|126465621|ref|YP_001040730.1| flap endonuclease-1 [Staphylothermus marinus F1]
gi|166973707|sp|A3DMG2.1|FEN_STAMF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|126014444|gb|ABN69822.1| flap endonuclease 1 [Staphylothermus marinus F1]
Length = 350
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/307 (39%), Positives = 182/307 (59%), Gaps = 22/307 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI +LE G+KP YVFDG+PP++K +E+ KR R DA+
Sbjct: 51 LMDSQGRITSHLSGLFYRTINILENGIKPAYVFDGKPPEIKAKEIEKRRKIREDASKKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E +++ + K+T + D K+LL MG+P ++AP+E EAQ A + G
Sbjct: 111 EALRKGDIEAARRYAMMSAKLTDEMVQDAKKLLDAMGIPWIQAPAEGEAQAAYIVSKGDA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
+A AS+D DSL FG+PR +R+L RK+P + K+LE+L LT +Q
Sbjct: 171 WASASQDYDSLLFGSPRLIRNLTISGKRKLPRKNVYIEIKPEIIELKKLLEKLGLTREQL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQI-PEDWPYQEARR 230
I + IL G DY D ++GIG + AL+L++ + +++ IL+ I + + I PE +
Sbjct: 231 IYVAILIGTDYNPDGVKGIGPKKALQLVKAYKTLDKILKIIPKTEFPIEPE-----KIVE 285
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK-IKAAKN--KSSQ 287
F P V TD +++W APDE + LV E+ FN +RV A+E+ +KA + KS Q
Sbjct: 286 YFLNPPVSTD---YKLEWRAPDESKIREILVEEHDFNPERVKNAVERLVKAYREHIKSKQ 342
Query: 288 GRLESFF 294
LE++F
Sbjct: 343 LGLEAWF 349
>gi|340501530|gb|EGR28305.1| hypothetical protein IMG5_178850 [Ichthyophthirius multifiliis]
Length = 322
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 174/280 (62%), Gaps = 23/280 (8%)
Query: 8 EVTSHLQGMFT------RTIRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
E+ H+Q ++ + I+ ++ G + I +F +LKKQ+ ++ DA +
Sbjct: 42 EIKQHIQQVYLIELFRLQKIKQIQYGYLMEILLF----LNLKKQK------QKFDALEKQ 91
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+ +E N K +R + +T++ +D ++LKL+G PV+EAP EAEAQCAAL K+GQ
Sbjct: 92 QKFLENQNMVQALKMEQRNIFITQEMKNDAIKMLKLLGFPVIEAPGEAEAQCAALTKTGQ 151
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V+A +EDMD+LTFG LR L +S+K P++E ++L+EL + +QFIDLCIL G
Sbjct: 152 VFATVTEDMDALTFGTTILLRGL---NSKKEPIVEINHYQMLKELEFSENQFIDLCILCG 208
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE--RYQIPEDWPYQEARRLFKEPEVV 238
CDY + I GIG A KLI++ ++E + I ++ R+ IP+++ +QE R LF++PE +
Sbjct: 209 CDYLEKIEGIGPVNAYKLIKEFKNLENTINFIEKKQNRFIIPKNYNFQEVRNLFQKPE-I 267
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278
+ E+++IKW P+ E L FLV E GFN +R+ K I +I
Sbjct: 268 ENVEKIEIKWQKPNLEKLNQFLVQEKGFNQERILKQINRI 307
>gi|124028216|ref|YP_001013536.1| flap endonuclease-1 [Hyperthermus butylicus DSM 5456]
gi|166973697|sp|A2BMI0.1|FEN_HYPBU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|123978910|gb|ABM81191.1| Endonuclease [Hyperthermus butylicus DSM 5456]
Length = 350
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 178/298 (59%), Gaps = 17/298 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+E G+K +YVFDG+PP++K E+ +R +++A
Sbjct: 50 LMDSKGRITSHLSGLFYRTINLMEHGIKIVYVFDGKPPEMKYLEIERRKRVKSEAVKKYE 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAV+ G+ + ++++ ++T + +D K+LL MGVP V+AP+E EAQ A + + G
Sbjct: 110 EAVKKGDTKAARRYAQMAARLTDEMVEDAKKLLDAMGVPWVQAPAEGEAQAAFMARRGDA 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FG+PR +R+L RK+P + E+ K+L+ L +T +Q
Sbjct: 170 WAAASQDYDSLLFGSPRLVRNLAITGRRKLPRKDVYVEIKPELIELDKLLKALGITREQL 229
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+ L IL G DY D ++GIG +TALK+++ H +L+ + R++ P D P +
Sbjct: 230 VALGILIGTDYNPDGVKGIGPKTALKMVKAHRDPVKLLQGL--PRHEFPTD-PLK-IYEY 285
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F P V TD +++W PDE+ + LV + F+ +RV A+E++K A + +G+
Sbjct: 286 FLNPPVTTD---YKLEWREPDEKKVFEILVEGHDFSPERVRNALERLKKAYREHFRGQ 340
>gi|161528211|ref|YP_001582037.1| flap endonuclease-1 [Nitrosopumilus maritimus SCM1]
gi|226700954|sp|A9A4B0.1|FEN_NITMS RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|160339512|gb|ABX12599.1| XPG I domain protein [Nitrosopumilus maritimus SCM1]
Length = 340
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 171/303 (56%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKMDATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ GN ED K++++T + + K+LL G+P +EAPSE EA A L +GQ
Sbjct: 107 KAIADGNMEDARKYAQQTTSMKDGMVKESKQLLTYFGIPYIEAPSEGEATAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP E K L+ L LT ++
Sbjct: 167 YASASQDFDSILCGAKRLVRNFTNSGRRKIPNKNTYIDIVPEIIETQKTLDSLELTREEL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ + +G +TALK+I+QH LE I + + Q+ E+ YQE R++
Sbjct: 227 IDVGILIGTDFNPNGFERVGPKTALKMIKQHSK----LEEIPQIQEQL-EEIDYQEIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F PEV +E I + + EG+ N+LV E F+ DRV + ++K A K SQ L+
Sbjct: 282 FLNPEVADVKE---IVFENVNYEGMSNYLVRERSFSEDRVNSTLNRLKKALEKKSQN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|347522663|ref|YP_004780233.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
gi|343459545|gb|AEM37981.1| flap structure-specific endonuclease [Pyrolobus fumarii 1A]
Length = 350
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 182/307 (59%), Gaps = 20/307 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+E G+K +YVFDG+PP++K E+ +R +++A
Sbjct: 50 LMDSRGRITSHLSGLFYRTINLIEHGIKVVYVFDGKPPEIKSIEIERRKKVKSEAAKKYE 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ G+ E ++++ ++T+ + KRLL MGVP V+AP++ EAQ A + + G V
Sbjct: 110 EAIKKGDLEAARRYAQMASRLTEDMVKEAKRLLDAMGVPWVQAPADGEAQAAYMARKGDV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D D+L FGAPR +R+L RK+P + E+ K+L+ L +T +Q
Sbjct: 170 WAAASQDYDALLFGAPRLVRNLTITGRRKLPKKDVYVEIKPELIELDKLLKALGITREQL 229
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY D +RGIG +TAL++++ + +L ++ R + + ++
Sbjct: 230 IVIGILVGTDYNPDGVRGIGPKTALRMVKAQPDVRKLLRSLPRNEFPTEPEKIFE----Y 285
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQG 288
F P VTDE +L+ W PDE+ + LV E+ F+ +RV AI+++K A K+ Q
Sbjct: 286 FLNPP-VTDEYKLE--WREPDEKMIYEILVVEHDFSPERVKNAIQRLKKAYREHFKTKQL 342
Query: 289 RLESFFK 295
L+ +FK
Sbjct: 343 GLDMWFK 349
>gi|15679628|ref|NP_276745.1| flap endonuclease-1 [Methanothermobacter thermautotrophicus str.
Delta H]
gi|28380011|sp|O27670.1|FEN_METTH RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|2622760|gb|AAB86106.1| DNA repair protein Rad2 [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 328
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 176/293 (60%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT ++E ++ IYVFDG+ LK + +++R R + +
Sbjct: 47 LMDSRGRVTSHLSGILYRTAAVMEREIRVIYVFDGRSHHLKGETVSRRADIRKKSEVEWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ + +K++ R+ +++ + + KRLL+L+G+P V+AP E EAQ + + K G
Sbjct: 107 RALEEGDIDRAKKYAVRSSRMSSEILESSKRLLELLGIPYVQAPGEGEAQASYMVKMGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVAS+D D L FGAPR +R+L + P + E+ L EL+++ Q +D+ +L G
Sbjct: 167 WAVASQDYDCLLFGAPRVVRNLTLSGKLEDPEI-IELESTLRELSISHTQLVDMALLVGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + ++GIG + LKLIR+ G I ++ ++ + P Q RR+F EPEV D
Sbjct: 226 DFNEGVKGIGARRGLKLIREKGDIFKVIRDLEADIGGDP-----QVLRRIFLEPEVSEDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E I+W PD EG+I FL +E+GF+ DRV A++K + A S+Q LE +F
Sbjct: 281 E---IRWRKPDVEGVIEFLCTEHGFSEDRVRAALKKFEGA--SSTQKSLEDWF 328
>gi|52549222|gb|AAU83071.1| DNA repair protein [uncultured archaeon GZfos26E7]
Length = 339
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 19/301 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT L+EAG+K ++VFDG PPD K + KR R A +
Sbjct: 48 LKDSRGRVTSHLSGLLYRTTNLVEAGLKLVFVFDGVPPDFKAATIEKRRKIRDTADREWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ AG +ED K+++ T ++ + D K LL MG+PVVEA SE EAQ A + +SG V
Sbjct: 108 EALAAG-REDAFKYAQATSRLQPEMVADAKSLLTSMGIPVVEAASEGEAQAARMARSGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV------MEFEVAKI---LEELNLTMDQF 172
V S+D DSL FGAP +R+L RK+P ++ E+ ++ L+ L +T +Q
Sbjct: 167 RFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKNVYVDVKLEIIELQPNLDRLGITQEQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ IL G DY I GIG + AL+LI +HGSIE L + + E + F
Sbjct: 227 IDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALPILGESIEHL------DEIKNFF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P+V D + W PDE + L E+GF+ RV KA+E++ A + SQ L+
Sbjct: 281 LNPDVTDD---YSLTWKKPDESKIAELLCHEHGFSEVRVAKAVERLVRASDSMSQSTLDM 337
Query: 293 F 293
+
Sbjct: 338 W 338
>gi|432328461|ref|YP_007246605.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135170|gb|AGB04439.1| flap structure-specific endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 339
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 180/302 (59%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT + G+KP+YVFDG+PP+LK + + +R R A ++
Sbjct: 47 LRDSRGRVTSHLSGLLYRTANYMAEGIKPVYVFDGRPPELKMRTIQERMHVRTRALEEWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +++ +T+ D+ K+LL MGVP V+APSE EAQ A + + G
Sbjct: 107 EALERGDLEEARTRAQQASFLTRDMVDEAKKLLDHMGVPWVQAPSEGEAQAAFMAQRGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA---------KILEELNLTMDQF 172
YA AS+D DSL FG PR +R++ RK+P V + L+ L +T +Q
Sbjct: 167 YASASQDFDSLLFGTPRLVRNMAITGKRKLPRKRVYVEVKPEMLVLNETLKNLEITREQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+D+ IL G D+ I+GIG +TALKLI++ GS+E +++ E+ + E+ Y+E R +F
Sbjct: 227 VDIGILVGTDFNPGIKGIGPKTALKLIKKFGSLERVMD----EKGIVIEN--YEEIRNIF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VT+E +LQ W DE+ L+ FL E+ F+ +RV A+EKIK K Q L++
Sbjct: 281 LNPP-VTNEYKLQWMWL--DEQKLLEFLCEEHDFSRERVLSAVEKIKMFKKYREQRSLDA 337
Query: 293 FF 294
+F
Sbjct: 338 WF 339
>gi|407464594|ref|YP_006775476.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047782|gb|AFS82534.1| flap endonuclease-1 [Candidatus Nitrosopumilus sp. AR2]
Length = 340
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNVNFLSLGIKPVYVFDGRPPSLKTAEIERRKQIKKDATVKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AV AGN ED KF+++T + + K+ L +G+P +EAPSE EA A L +GQ
Sbjct: 107 KAVAAGNMEDARKFAQQTTSMKDGMVKESKQFLTYLGIPYIEAPSEGEATAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ RKIP E K L+E+ LT ++
Sbjct: 167 YASASQDYDSILCGAKRLVRNFTTSGRRKIPNRNTYIDILPEIIETQKTLDEIGLTREEL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ + IG +TA+KLI+Q+ LE+I + + Q+ E +++ R +
Sbjct: 227 IDVGILIGTDFNPNGFERIGPKTAMKLIKQYSR----LEDIPQIQEQLQE-IDFKQIRNI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F PEV +E I ++ D EG+ N+LV E F+ DR+ + ++K A K SQ L+
Sbjct: 282 FLNPEVAEVDE---IVFNEVDYEGVTNYLVKERSFSEDRIQSTLNRLKKALEKKSQN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|302348204|ref|YP_003815842.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
gi|302328616|gb|ADL18811.1| flap endonuclease-1 [Acidilobus saccharovorans 345-15]
Length = 350
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 182/306 (59%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K++E+ +R +++ +A + A
Sbjct: 50 LKDSQGRVTSHLSGLFYRTINLVEEGLKPVYVFDGKPPEMKRKEIEERVARKKEAAEKYA 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E+G+ E+ K+++ T +++ + KRLL MG+P V+AP++ EAQ A L + G
Sbjct: 110 KAKESGSIEEARKYAQATSELSSDMVSEAKRLLDYMGIPWVQAPADGEAQAAHLAQKGDA 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FGAPR +R+L RK+P + ++ +L+ L +T +Q
Sbjct: 170 WAAGSQDYDSLLFGAPRLVRNLAITGKRKLPNKDEYVEVKPEIIDLNAMLKALGITREQL 229
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I L IL G D+ D I+G G +TAL ++ + LE+I + Q+P D +
Sbjct: 230 ILLGILVGTDFDPDGIKGYGPKTALNFVKGVKDVTKALESI---KSQLPGDVDPFKIFDY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKN--KSSQG 288
F +P V +D +I + PD E + LV E+ F+ DRV KA E++ KA K + Q
Sbjct: 287 FAKPPVSSD---YRILFKEPDVEKIKELLVREHDFSEDRVVKAAERLAKAFKENLRGKQS 343
Query: 289 RLESFF 294
RL+ +F
Sbjct: 344 RLDMWF 349
>gi|409095300|ref|ZP_11215324.1| flap endonuclease-1 [Thermococcus zilligii AN1]
Length = 340
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/303 (39%), Positives = 177/303 (58%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G F RTI L+EAG+KP YVFDG+PP+ KK+E+ KR R +A +
Sbjct: 47 LMDSKGRITSHLSGFFYRTINLMEAGIKPAYVFDGKPPEFKKKEIEKRKEAREEAEEKWQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ +K++ R +V ++ D K+LL+LMG+PVV+APSE EAQ A + G+V
Sbjct: 107 EALEKGDLEEAKKYAMRATRVNEELISDAKKLLELMGIPVVQAPSEGEAQAAYMAAKGKV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YA AS+D DSL FGAP+ +R+L RK+P E V ++L+EL + ++
Sbjct: 167 YASASQDYDSLLFGAPKLVRNLTITGRRKLPGKEVYVEVKPELIVLEEVLKELGIDREKL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I+L IL G DY I+GIG + AL ++++ N +Y + +
Sbjct: 227 IELAILVGTDYNPGGIKGIGPKKALMIVKRI--------NDPLRKYSNESEVDLYAIKEF 278
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P V D E + W PDEEG++ FL E+ F+ +RV +E+++ A Q LE
Sbjct: 279 FLNPPVTDDYE---LTWREPDEEGILRFLCEEHDFSEERVKGGLERLRKAVESGKQRTLE 335
Query: 292 SFF 294
S+F
Sbjct: 336 SWF 338
>gi|401888159|gb|EJT52124.1| flap endonuclease [Trichosporon asahii var. asahii CBS 2479]
Length = 359
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/184 (52%), Positives = 136/184 (73%), Gaps = 3/184 (1%)
Query: 30 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 89
P YVFDG+PPDLK L +R+ +R +A + EA E G EDI++ S+R V+VTK+HN++
Sbjct: 23 PCYVFDGKPPDLKSGVLKQRFGRREEAKEAEEEARETGTAEDIDRMSRRQVRVTKEHNEE 82
Query: 90 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 149
CKRLL LMG+P V AP EAEAQCA L ++G+V+A SEDMD+LTF P LRHL ++
Sbjct: 83 CKRLLGLMGIPCVTAPGEAEAQCAELARAGKVFAAGSEDMDTLTFHTPILLRHLTFSEAK 142
Query: 150 KIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETIL 209
K+P+ E ++ + L+ L++TMDQ LCIL GCDY + ++G+G +TALKL+R+HGS+E ++
Sbjct: 143 KMPISEIKLEEALKGLDMTMDQ---LCILLGCDYLEPVKGVGPKTALKLMREHGSLEKVV 199
Query: 210 ENIN 213
E I
Sbjct: 200 EFIK 203
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 218 QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK 277
QIPE WP++EA++LF P+VV E+ Q PD EGL+ FLV E GF DRV K
Sbjct: 259 QIPEYWPWEEAKKLFITPDVVKGEDLEQ-----PDVEGLVEFLVREKGFKEDRVRAGAAK 313
Query: 278 IKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
+ QGRL+ FF T AP KRK
Sbjct: 314 LSKMLAAKQQGRLDGFFTVKPKTDAP-KRK 342
>gi|315426143|dbj|BAJ47788.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
gi|343485003|dbj|BAJ50657.1| flap endonuclease 1 [Candidatus Caldiarchaeum subterraneum]
Length = 344
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 172/302 (56%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+ G+ P+YVFDG+PP+ K + + KR R +A
Sbjct: 50 LMDRRGRVTSHLSGLFFRTINFLQEGLLPVYVFDGRPPEEKYRTIEKRAVAREEAGKLYE 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+ G+ E ++++R + K + LLK MGVP V APSE EAQ A + G V
Sbjct: 110 AALAEGDLEAARRYAQRAASLEKYMVESAADLLKAMGVPYVMAPSEGEAQAAYMAAKGSV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME--FEVA-------KILEELNLTMDQF 172
YA S+DMDSL FG+PR +R+L RK+P + EV K+L L LT +Q
Sbjct: 170 YAAGSQDMDSLLFGSPRLVRNLSIVGRRKLPGRKEYVEVVPEIIYLDKLLASLGLTREQL 229
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ +L G DY +RG+G +TALK+++++GS+E +E E ++ Q R+LF
Sbjct: 230 IDIGLLVGTDYSPQVRGVGPKTALKIVKEYGSLEKAVETGAVE-----VEFDVQTVRQLF 284
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
+P V D + W P EE ++ LV E F+ +RV KA+ +++ +K S L++
Sbjct: 285 LKPRVTDD---YTLNWREPSEEMVMELLVEEFDFSRERVGKALAELRQTLSKRSSS-LDA 340
Query: 293 FF 294
FF
Sbjct: 341 FF 342
>gi|386876195|ref|ZP_10118324.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
gi|386805976|gb|EIJ65466.1| flap structure-specific endonuclease [Candidatus Nitrosopumilus
salaria BD31]
Length = 340
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 173/303 (57%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNVNFLSIGIKPVYVFDGKPPSLKTAEIERRKQIKKDATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AV AGN ED K++++T + + K LL G+P +EAPSE EA A L ++GQ
Sbjct: 107 KAVAAGNMEDARKYAQQTTSMKDGMVKESKELLTYFGIPYIEAPSEGEATAAHLTQTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP--------VME-FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP V E E K L L +T ++
Sbjct: 167 YASASQDFDSILCGAKRLIRNFTNSGRRKIPNKNTYIDIVPEIIETQKTLNALGITREEL 226
Query: 173 IDLCILSGCDYCDS-IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ S IG +TA+KLI+QH LE+I + + Q+ E +++ R++
Sbjct: 227 IDVGILIGTDFNPSGFERIGPKTAMKLIKQHSR----LEDIPQIQEQLQE-IDFEKIRQI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F PEV +E I +S D E + N+LV E F+ DR+ + ++K A K SQ L+
Sbjct: 282 FLNPEVADVDE---IIFSEVDYEKITNYLVKERSFSEDRIQSTLNRLKKALEKKSQN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|134045325|ref|YP_001096811.1| flap endonuclease-1 [Methanococcus maripaludis C5]
gi|132662950|gb|ABO34596.1| flap endonuclease 1 [Methanococcus maripaludis C5]
Length = 324
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 172/295 (58%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE+TS G+F +TI +LE M PI+VFDG+ DLK++ +R R A D
Sbjct: 47 LKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYL 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + K+ D+ K+LL+LMG+P + APSE EAQCA L KS
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D DS+ +GA ++++ S++ I ++E E K L ELN+++DQ ID+ IL G
Sbjct: 167 FCVISQDYDSILYGAENVVKNIT-SSNKDIELIELE--KTLSELNVSLDQLIDVAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G G + A+ +++ G +E + I Y E R++F EP V +
Sbjct: 224 DYNPGGLKGFGPKKAIDTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTS- 271
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ K P +E L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 272 --EYDTKLKTPKKEELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|393795424|ref|ZP_10378788.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia BG20]
Length = 339
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 173/303 (57%), Gaps = 20/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R I L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKKDATVKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ AGN ED KF+++T + + K++L G+P ++APSE EA A L +GQ
Sbjct: 107 KAIAAGNMEDARKFAQQTTSMKDGMVKESKQILTYFGIPYIDAPSEGEAMAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP E K L+ L +T +Q
Sbjct: 167 YASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDALGVTREQL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G D+ + IG +TALK+I+QH + LE+I + + Q+ E YQ+ R++
Sbjct: 227 VDIGILIGTDFNPNGFDRIGPKTALKMIKQH----SCLEDIPQIQEQLQE-IDYQQIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F EP V +E I + D EG+ N+L E F+ DR+ ++ ++K A K SQ L+
Sbjct: 282 FLEPIVAEVDE---IVFGQVDYEGMTNYL-KERSFSEDRIQSSLNRLKKALEKKSQN-LD 336
Query: 292 SFF 294
+F
Sbjct: 337 QWF 339
>gi|118596590|dbj|BAF37954.1| putative flap endonuclease-1 [Sulfolobus sp. M02]
Length = 304
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 185/304 (60%), Gaps = 20/304 (6%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 67 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
G+ +++K+++ ++K+T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIKLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 175
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRGLFLN 242
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 290
P+VV +E L++ +A D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--AACDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 291 ESFF 294
+ +F
Sbjct: 301 DQWF 304
>gi|348500556|ref|XP_003437839.1| PREDICTED: probable flap endonuclease 1 homolog [Oreochromis
niloticus]
Length = 348
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 162/275 (58%), Gaps = 24/275 (8%)
Query: 6 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
A + S L G+F RT+ LE G+KP++VFDG+PP KK L KR A
Sbjct: 45 ATPLLSPLTGLFFRTLTFLEHGIKPVFVFDGKPPGEKKAVLEKR-------------AQT 91
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
AG +S T + Q +C +LLK +GVPV++AP +AEA CA L + G V+AVA
Sbjct: 92 AG-----RNYSNWTGTASSQ-TKECLQLLKCLGVPVIQAPGDAEALCAQLVREGTVHAVA 145
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 185
SEDMD+L FGA +R L + + V+E+ + K+LE+L + +F+DLCIL GCDYC+
Sbjct: 146 SEDMDTLPFGANILIRQLN--AKKDSEVIEYSLPKLLEKLQIGHKEFVDLCILLGCDYCE 203
Query: 186 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 245
I G+G + AL LI++H +IE ++ +INR+ + +P W Y+EAR++F + + E +
Sbjct: 204 KIPGLGPKRALTLIQKHRTIEDVVLHINRKTHPVPNIWKYREARKIFLDGPQSSAPELI- 262
Query: 246 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA 280
W+ P+EE L+ FL +R+ + K +
Sbjct: 263 --WTEPNEEALVEFLCHTKRVKEERIRNRMVKFRT 295
>gi|329764928|ref|ZP_08256517.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329138597|gb|EGG42844.1| flap endonuclease-1 [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 339
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 20/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R I L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKKDATVKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ AGN ED KF+++T + + K++L G+P ++APSE EA A L +GQ
Sbjct: 107 KAIAAGNMEDARKFAQQTTSMKDGMVKESKQILTYFGIPYIDAPSEGEAMAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP E K L+ L +T +Q
Sbjct: 167 YASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDALGVTREQL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G D+ + IG +TALK+I+QH +E I + I + +I YQ+ R++
Sbjct: 227 VDIGILIGTDFNPNGFDRIGPKTALKMIKQHSRLEDIPQ-IQEQLLEI----DYQQIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F EP V +E I + D EG+ N+L E F+ DR+ ++ ++K A K SQ L+
Sbjct: 282 FLEPIVAEVDE---IVFGQVDYEGMTNYL-KERSFSEDRIQSSLNRLKKALEKKSQN-LD 336
Query: 292 SFF 294
+F
Sbjct: 337 QWF 339
>gi|77640971|ref|NP_146975.2| flap endonuclease-1 [Aeropyrum pernix K1]
gi|150421551|sp|Q9YFY5.3|FEN_AERPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116062210|dbj|BAA79026.2| flap structure-specific endonuclease [Aeropyrum pernix K1]
Length = 350
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 176/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 50 LLDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYR 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVEAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 110 RAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 170 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQL 229
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY +RG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 230 IAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P V D +I++ PD++ + LV + FN +RV +A+E++ A K + Q
Sbjct: 287 FLNPPVTDD---YKIEFRKPDQDKVREILVERHDFNPERVERALERLGKAYREKLRGRQS 343
Query: 289 RLESFF 294
RL+ +F
Sbjct: 344 RLDMWF 349
>gi|296242726|ref|YP_003650213.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
gi|296095310|gb|ADG91261.1| flap endonuclease 1 [Thermosphaera aggregans DSM 11486]
Length = 353
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 177/297 (59%), Gaps = 17/297 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI L+E G+K +YVFDG+PP+LK +EL +R + + ++
Sbjct: 51 LMDSQGRITSHLSGLFYRTINLVEEGLKTVYVFDGKPPELKARELERRRALKEESARKYE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVEAG+ E +++ K+T + + KRLL +GVP V+AP+E EAQ A L K G
Sbjct: 111 AAVEAGDLEAARRYAMMASKLTDEMVKEAKRLLDALGVPWVQAPAEGEAQAAYLAKKGDA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DSL FG+PR +R+L RK+P E E+ +L +L+LT++
Sbjct: 171 YASASQDYDSLLFGSPRLIRNLTISGRRKLPRREEYVEVKPEMIELNTLLLKLSLTLENL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY + GIG + A +L++ +GSIE I + + + +++ E ++
Sbjct: 231 IDVGILVGTDYNPEGFEGIGVKKAYQLVKTYGSIEKIPKALLKSSFEV----DVLEIKKY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
F +P V + +I+W PDE+ + LV+E+ F+ DRV A+E+ A ++ +G
Sbjct: 287 FLQPPVT---DSYKIEWREPDEKSVFEILVNEHDFSEDRVRNALERFTKAYKENIKG 340
>gi|166085101|dbj|BAF99815.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085103|dbj|BAF99816.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 401
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 175/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 101 LMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYR 160
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVEAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 161 RAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 220
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 221 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELETLLSKLGITREQL 280
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY +RG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 281 IAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEY 337
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P V D +I++ PD + + LV + FN +RV +A+E++ A K + Q
Sbjct: 338 FLNPPVTDD---YKIEFRKPDRDKVREILVERHDFNPERVERALERLAKAYREKLRGRQS 394
Query: 289 RLESFF 294
RL+ +F
Sbjct: 395 RLDMWF 400
>gi|432911452|ref|XP_004078686.1| PREDICTED: probable flap endonuclease 1 homolog [Oryzias latipes]
Length = 343
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 155/255 (60%), Gaps = 24/255 (9%)
Query: 6 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
A ++S L+G+F RT+ LE +KP++VFDG+PP K L KR AEA
Sbjct: 45 ATPLSSPLRGLFFRTLTFLEHDIKPVFVFDGKPPVEKLPLLEKR-----------AEA-- 91
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
AG + + DC +LK +GVPVV+AP +AE CA+L + G+ +AVA
Sbjct: 92 AGWSRPLR------TGIASSQTRDCLEVLKHLGVPVVQAPGDAEGLCASLVREGRAHAVA 145
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 185
SEDMD+L FGA +R L + + ++E+ + K+LE L +++++ +DLCIL GCDYCD
Sbjct: 146 SEDMDTLPFGANVLIRQLN--AKKDSEIVEYSLPKLLEALRISLEELVDLCILLGCDYCD 203
Query: 186 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 245
I G+G + AL LI++H +IE +L NINRE + +P W ++E+R++F +P E
Sbjct: 204 KIPGLGPKRALALIQKHRTIENVLLNINRETHPVPHLWKFKESRQIFLDPPGPPTPE--- 260
Query: 246 IKWSAPDEEGLINFL 260
+ W+ PDEE L+ FL
Sbjct: 261 LVWTEPDEEALVKFL 275
>gi|73668744|ref|YP_304759.1| flap endonuclease-1 [Methanosarcina barkeri str. Fusaro]
gi|121723542|sp|Q46D63.1|FEN_METBF RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|72395906|gb|AAZ70179.1| flap endonuclease 1 [Methanosarcina barkeri str. Fusaro]
Length = 338
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 167/303 (55%), Gaps = 21/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G+VTSHL G+ RT L+E G+KP+++FDG+PPDLK + L +R R + +
Sbjct: 47 LVNSRGKVTSHLSGLLYRTASLIEVGIKPVFIFDGKPPDLKSETLNRRKEVRESSLEKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A G+ E K+++ + KV ++ +D K LL +MG+P ++AP E EAQ A +
Sbjct: 107 NAKVEGDLEAAYKYAQASSKVDQEIVEDSKYLLSIMGIPWIQAPCEGEAQAAHMVLKKDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
VAS+D DS FGAP +R+L RK+P V + L L + +Q
Sbjct: 167 DYVASQDYDSFLFGAPTVIRNLAVTGKRKLPGKHVYVDVELELIELEETLGVLGINREQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-YQIPEDWPYQEARRL 231
ID+ I G D+ + +G +TALKLI++HG I +L RE+ +I E R L
Sbjct: 227 IDIAICVGTDFNKGLEKVGPKTALKLIKKHGDIHAVL----REKGVEIKE---LDRIREL 279
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P+V D E IKW PD E LI FL EN F+ DRV KA+E++K ++ Q L+
Sbjct: 280 FTHPDVTDDYE---IKWGKPDSEKLIKFLCKENDFSVDRVKKAVERLKVV-SRGRQQTLD 335
Query: 292 SFF 294
+F
Sbjct: 336 QWF 338
>gi|166085109|dbj|BAF99819.1| flap endonuclease-1 [Aeropyrum pernix]
gi|166085111|dbj|BAF99820.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 175/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 17 LMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYR 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVEAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 77 RAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 137 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQL 196
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY +RG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 197 IAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVHEY 253
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P D +I++ PD++ + LV + FN +RV +A+E++ A K + Q
Sbjct: 254 FLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALERLAKAYREKLRGRQS 310
Query: 289 RLESFF 294
RL+ +F
Sbjct: 311 RLDMWF 316
>gi|159905743|ref|YP_001549405.1| flap endonuclease-1 [Methanococcus maripaludis C6]
gi|159887236|gb|ABX02173.1| XPG I domain protein [Methanococcus maripaludis C6]
Length = 324
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 174/295 (58%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE+TS G+F +TI +LE M PI+VFDG+ DLK++ +R R A D
Sbjct: 47 LKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYL 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + K+ D+ K+LL+LMG+P ++APSE EAQCA L K+
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKIIDNSKKLLELMGIPYIDAPSEGEAQCAELVKANDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D DS+ +GA ++++ S++ I ++E E K L ELN+++DQ ID+ IL G
Sbjct: 167 FCVISQDYDSILYGAENVVKNIT-SSNKDIELIELE--KTLSELNVSLDQLIDVAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G G + A+ +++ ++ I E N Y E R++F EP V ++
Sbjct: 224 DYNPGGLKGFGPKKAIDTVKKGQMVKYISEIEN-----------YSEIRKIFDEPNVTSE 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ L P +E L FL+ EN F+ DRV IEKI NK SQ LE++F
Sbjct: 273 YDTL---LKIPKKEELAEFLIEENDFSKDRVLPNIEKISNLLGNKKSQKSLEAWF 324
>gi|166085113|dbj|BAF99821.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 175/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 17 LMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYR 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVEAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 77 RAVEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 137 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELEPLLSKLGITREQL 196
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY +RG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 197 IAVGILLGTDYNPGGVRGYGPKTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEY 253
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P D +I++ PD++ + LV + FN +RV +A+E++ A K + Q
Sbjct: 254 FLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALERLAKAYREKLRGRQS 310
Query: 289 RLESFF 294
RL+ +F
Sbjct: 311 RLDMWF 316
>gi|407462243|ref|YP_006773560.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
gi|407045865|gb|AFS80618.1| flap endonuclease-1 [Candidatus Nitrosopumilus koreensis AR1]
Length = 340
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 171/303 (56%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDAEGRITSHLSGLLYRNVNFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKMDATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ GN ED K++++T + + K LL G+P +EAPSE EA A L +GQ
Sbjct: 107 KAIADGNMEDARKYAQQTTSMKDGMVKESKHLLACFGIPYIEAPSEGEATAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP E K L+ L LT ++
Sbjct: 167 YASASQDFDSILCGAKRLVRNFTNSGRRKIPNKNTYIDIVPEIIETQKTLDSLELTREEL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ + IG +TALK+I+QH LE+I + + Q+ E +Q+ R++
Sbjct: 227 IDVGILIGTDFNPNGFERIGPKTALKMIKQHSR----LEDIPQIQEQLQE-IDFQQIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F PEV +E I + D +G+ ++LV E F+ DRV+ + ++K A + SQ L+
Sbjct: 282 FLNPEVADVKE---IIFKDVDYKGITDYLVKERSFSEDRVSSTLNRLKKALERKSQN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|166085105|dbj|BAF99817.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 175/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 17 LMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYR 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+EAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 77 RALEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 137 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQL 196
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY IRG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 197 IAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASVPRGEYN--PDY-LRKVYEY 253
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P D +I++ PD++ + LV + FN +RV +A+E++ A K + Q
Sbjct: 254 FLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALERLAKAYREKLRGRQS 310
Query: 289 RLESFF 294
RL+ +F
Sbjct: 311 RLDMWF 316
>gi|325968460|ref|YP_004244652.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
gi|323707663|gb|ADY01150.1| flap structure-specific endonuclease [Vulcanisaeta moutnovskia
768-28]
Length = 349
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 17/304 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ RTI LE + P+YVFDG+PP+ K E+ +R R +A D
Sbjct: 51 LMDTKGRITSHLSGLLYRTINFLENRIWPVYVFDGKPPEEKTLEIVRRRRVREEAMDKWV 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ +E G +E+ K+++R + +T +D K+LL LMG+PVV+A ++ EAQ A + K G+
Sbjct: 111 KLLEEGKREEARKYAQRALFLTDDMVEDAKKLLVLMGIPVVQAMADGEAQAAVIAKEGKA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLT-MDQ 171
+A S+D DSL FGAPR +R+L RK+P + E+ +IL L L Q
Sbjct: 171 WAAGSQDYDSLLFGAPRLVRNLAITGRRKLPNKDEYVEIRPEIIELNEILRALKLKDRIQ 230
Query: 172 FIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
IDL +L G D D + GIG Q ALKLI++ GS+E +L+ + Q P D P + R
Sbjct: 231 LIDLAVLLGTDLNPDGVPGIGPQRALKLIQEFGSLEKLLQG-PLKNAQFPMD-PLK-IRD 287
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P I++ DE G+I FLV E+ FN +RV AIE+++ A K + L
Sbjct: 288 YFLNPPY---NPNYAIEFRQSDERGIIEFLVHEHDFNEERVRNAIERLRKAMGKRRESTL 344
Query: 291 ESFF 294
+SFF
Sbjct: 345 DSFF 348
>gi|28380019|sp|Q976H6.2|FEN_SULTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|342306106|dbj|BAK54195.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 351
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 186/309 (60%), Gaps = 20/309 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L
Sbjct: 47 LMDSQGRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLE 106
Query: 62 EAVEAGN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
+A G+ +++K+++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G
Sbjct: 107 QAKTEGSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILG 166
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMD 170
+A AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +
Sbjct: 167 LSWATASQDYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTRE 226
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R
Sbjct: 227 QLIDIGIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIR 284
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKS 285
LF +P+VV +E L++ D +++ LV + FN +RV IE++ + AK S
Sbjct: 285 SLFLKPQVVEPKENLEL--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGAS 342
Query: 286 SQGRLESFF 294
Q L+ +F
Sbjct: 343 RQTGLDQWF 351
>gi|166085107|dbj|BAF99818.1| flap endonuclease-1 [Aeropyrum pernix]
Length = 317
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 175/306 (57%), Gaps = 19/306 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+E G+KP+YVFDG+PP++K +E+ +R ++A+A
Sbjct: 17 LMDREGRVTSHLSGLFYRTINLVEEGIKPVYVFDGKPPEMKSREVEERLKRKAEAEARYR 76
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+EAG E+ K++ ++T ++ K LL MG+P V+AP+E EAQ A + + G
Sbjct: 77 RALEAGEVEEARKYAMMAARLTSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMARKGDA 136
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A S+D DSL FG+PR +R+L RK+P + E+ +L +L +T +Q
Sbjct: 137 WATGSQDYDSLLFGSPRLVRNLAITGRRKLPGRDQYVEIKPEIIELESLLSKLGITREQL 196
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY IRG G +TAL+L++ G +L ++ R Y D+ ++
Sbjct: 197 IAVGILLGTDYNPGGIRGYGPKTALRLVKSLGDPMKVLASVPRGEYD--PDY-LRKVYEY 253
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA---KNKSSQG 288
F P D +I++ PD++ + LV + FN +RV +A+E++ A K + Q
Sbjct: 254 FLNPPATDD---YKIEFRKPDQDKVREILVERHDFNPERVERALERLAKAYREKLRGRQS 310
Query: 289 RLESFF 294
RL+ +F
Sbjct: 311 RLDMWF 316
>gi|118596592|dbj|BAF37955.1| putative flap endonuclease-1 [Sulfolobus sp. NO82]
Length = 304
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAE 64
Query: 67 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
GN + +K+++ +++++ + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GNIKTSEFKKYAQMSIRLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 175
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLN 242
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 290
P+VV +E L++ + D+ +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--ADCDDNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 291 ESFF 294
+ +F
Sbjct: 301 DQWF 304
>gi|150402483|ref|YP_001329777.1| flap endonuclease-1 [Methanococcus maripaludis C7]
gi|150033513|gb|ABR65626.1| XPG I [Methanococcus maripaludis C7]
Length = 324
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE+TS G+F +TI +LE M PI+VFDG+ DLK++ +R R A D
Sbjct: 47 LKNKNGEITSTYNGIFYKTIYMLENEMTPIWVFDGKSHDLKEKTKEERRKSRNGALDSYL 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + K+ D+ K+LL+LMG+P + APSE EAQCA L KS
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTIDNSKKLLELMGIPYINAPSEGEAQCAELVKSNDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D DS+ +GA ++++ S++ I ++E + K L ELN++++Q ID+ IL G
Sbjct: 167 FCVISQDYDSILYGAENVVKNIT-SSNKDIELIELQ--KTLSELNVSLNQLIDVAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G G + A+ +++ G +E + I Y E R++F EP V +
Sbjct: 224 DYNPGGLKGFGPKKAIDTVKK-GQMEKYISEIEN----------YSEIRKIFDEPNVTS- 271
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ K P +E L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 272 --EYDTKLKTPKKEELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKNLEAWF 324
>gi|118596594|dbj|BAF37956.1| putative flap endonuclease-1 [Sulfolobus sp. G81]
Length = 304
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKAE 64
Query: 67 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
GN +++K+++ ++K++ + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GNIKTSELKKYAQMSIKLSNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 175
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLVRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLN 242
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 290
P+VV +E L++ + D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--ADCDGNKILDILVKIHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 291 ESFF 294
+ +F
Sbjct: 301 DQWF 304
>gi|45358876|ref|NP_988433.1| flap endonuclease-1 [Methanococcus maripaludis S2]
gi|45047742|emb|CAF30869.1| flap endonuclease [Methanococcus maripaludis S2]
Length = 324
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 171/295 (57%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ G++TS G+F +TI +LE GM PI+VFDG+ +LK++ +R R A D
Sbjct: 47 LKNKNGDITSTYNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYM 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + K+ D+ K+LL+LMG+P V APSE EAQCA L K+
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDKKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D DS+ +GA ++++ S++ I ++E E K L LN++ DQ ID IL G
Sbjct: 167 FCVISQDYDSILYGAENVVKNIT-SSNKDIELIELE--KTLSGLNISRDQLIDAAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G G + A+ +++ G +E + I Y E R++F EP V TD
Sbjct: 224 DYNPGGLKGFGPKKAIDTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTTD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ I P ++ L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 273 YD---ITLKTPKKDELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|304313993|ref|YP_003849140.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
gi|302587452|gb|ADL57827.1| flap structure-specific endonuclease [Methanothermobacter
marburgensis str. Marburg]
Length = 328
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 173/293 (59%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT ++E ++ YVFDG+ LK + + +R R + +
Sbjct: 47 LMDSEGRVTSHLSGILYRTAAVMERDIRMAYVFDGKSHHLKGETVTRRIETRKKSEVEWR 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G+ E K++ R+ ++++ + KRLL+L+G+P V+AP E EAQ + + + G
Sbjct: 107 RALEEGDIERARKYAVRSSRMSQDIVESSKRLLELLGIPYVQAPGEGEAQASFIVRRGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVAS+D D L FGAPR +R+L S + E+ L L++T +Q +DL +L G
Sbjct: 167 WAVASQDYDCLLFGAPRVVRNLT-LSGKLEEPEIIELESALRNLSITHEQLVDLALLVGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ D I+GIG + LKLI++ G + +++E I+ + PE R +F EP+V D
Sbjct: 226 DFNDGIKGIGARRGLKLIKEKGDVFSVIEEIDGDIGGDPE-----VLRGIFLEPDVTGDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E ++W PD +G+I+FL E+GF+ +RV A++KI+ A +Q LE +F
Sbjct: 281 E---LRWRKPDRDGVIDFLCGEHGFSEERVMAALKKIEGA--SFTQKSLEDWF 328
>gi|118596582|dbj|BAF37950.1| putative flap endonuclease-1 [Sulfolobus sp. Tu A]
gi|118596584|dbj|BAF37951.1| putative flap endonuclease-1 [Sulfolobus sp. Tu B-1]
gi|118596586|dbj|BAF37952.1| putative flap endonuclease-1 [Sulfolobus sp. Sko-3]
gi|118596588|dbj|BAF37953.1| putative flap endonuclease-1 [Sulfolobus sp. Ta]
Length = 304
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 67 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
G+ +++K+++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 175
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLIRNLTLTGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF +
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLK 242
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 290
P+VV +E L++ D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 291 ESFF 294
+ +F
Sbjct: 301 DQWF 304
>gi|15920393|ref|NP_376062.1| flap endonuclease-1 [Sulfolobus tokodaii str. 7]
Length = 304
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 184/304 (60%), Gaps = 20/304 (6%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G VTSHL G+F RTI +LE G+ PIYVFDG+PP+ K QEL +R + +A L +A
Sbjct: 5 GRVTSHLNGLFYRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTE 64
Query: 67 GN--KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
G+ +++K+++ ++++T + ++ K LLK MG+PVV+APSE EA+ A + G +A
Sbjct: 65 GSIKTSELKKYAQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAAYINILGLSWAT 124
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQFIDL 175
AS+D DSL FGA R +R+L RK+P + E+ +L++L LT +Q ID+
Sbjct: 125 ASQDYDSLLFGAKRLIRNLTLSGKRKLPGKDVYVEIKPELIELDTLLKKLGLTREQLIDI 184
Query: 176 CILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
I+ G DY D I+G G +TA ++I+++GS+E +E E +I ++ +E R LF +
Sbjct: 185 GIIVGTDYNPDGIKGYGVKTAYRIIKKYGSLEKAIE--KGEIPKIKVNFNVEEIRSLFLK 242
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI----KAAKNKSSQGRL 290
P+VV +E L++ D +++ LV + FN +RV IE++ + AK S Q L
Sbjct: 243 PQVVEPKENLEL--VDCDSNKILDILVKTHDFNEERVKNGIERLEKAKREAKGASRQTGL 300
Query: 291 ESFF 294
+ +F
Sbjct: 301 DQWF 304
>gi|41614884|ref|NP_963382.1| flap endonuclease-1 [Nanoarchaeum equitans Kin4-M]
gi|48427872|sp|P61942.1|FEN_NANEQ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|40068608|gb|AAR38943.1| NEQ088 [Nanoarchaeum equitans Kin4-M]
Length = 339
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 113/304 (37%), Positives = 168/304 (55%), Gaps = 25/304 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI LLE G+KPIYVFDG PP K KR +
Sbjct: 48 LRDSKGRITSHLSGLFYRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ GN ++ K++K K+ ++ K+LL+ MG+P V+APSE EA+ A L K G
Sbjct: 108 EALKKGNIQEAIKYAKSLGKLDSYMVEEAKKLLEAMGIPYVQAPSEGEAEAAYLTKKGVS 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
S+D DSL FG+PR +R++ RK+P V+E E +L +T +
Sbjct: 168 DYCGSQDYDSLLFGSPRVVRNITISEKRKLPGKNIYVEVKPEVIELEA--VLNYWKITRE 225
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q I + +L G DY + + GIG +TA++++++ G ++ E Y+IP +E
Sbjct: 226 QLIAIAMLLGTDYNEKVPGIGPKTAIEIVKRFGDPIKVI-----EYYKIPNG---KEIFE 277
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V+ E KW P++E + LV E+ FN +RV +AIE+++ A NK +Q L
Sbjct: 278 FFLNPPVIDFEP----KWGKPNKELIFKILVEEHDFNPERVERAIERLEKALNKINQKTL 333
Query: 291 ESFF 294
SFF
Sbjct: 334 FSFF 337
>gi|297619418|ref|YP_003707523.1| flap structure-specific endonuclease [Methanococcus voltae A3]
gi|297378395|gb|ADI36550.1| flap structure-specific endonuclease [Methanococcus voltae A3]
Length = 327
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 171/295 (57%), Gaps = 16/295 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GE TS G+F +TI +LE G+ PI+VFDGQ +LK+ +R R A +
Sbjct: 47 LKNSSGETTSAYNGIFYKTINMLEMGLTPIWVFDGQAHELKEITREERRKTRQKALSEYL 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A + + E ++KF+KR + +CKRLL LMGVP + + SE EAQCA + K G
Sbjct: 107 VAKKEEDTEKMQKFAKRMNYLDTNMVLNCKRLLDLMGVPHLTSGSEGEAQCAEIVKKGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AV S+D DSL +GA R +R++ SS++ +E + +L+EL++ Q ID+ IL G
Sbjct: 167 FAVVSQDYDSLLYGADRVIRNITSSSSKEFEYIELK--DVLDELDINRSQLIDMSILIGT 224
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G+G + AL +++ N E+Y PE Y E R++F EP V+++
Sbjct: 225 DYNPKGVKGLGPKKALDVVK----------NNQMEKYA-PEIENYSEIRKIFDEP-VLSE 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA-AKNKSSQGRLESFF 294
++ +K PD G+ FLV EN F+ DRV + EK+ K+K SQ LES+F
Sbjct: 273 YKKSDLKLKRPDLAGIFKFLVEENDFSEDRVKSSSEKLDGLVKSKLSQSSLESWF 327
>gi|11497880|ref|NP_069102.1| flap endonuclease-1 [Archaeoglobus fulgidus DSM 4304]
gi|28380012|sp|O29975.1|FEN_ARCFU RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|42543625|pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543626|pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|42543629|pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
gi|2650376|gb|AAB90967.1| DNA repair protein RAD2 (rad2) [Archaeoglobus fulgidus DSM 4304]
Length = 336
Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 169/302 (55%), Gaps = 21/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R ++E G++P++VFDG+PP+ KK E+ +R +RA+A +
Sbjct: 47 LKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWI 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++AG+K D +K+++ +V + D K LL MG+P V+APSE EAQ A + G V
Sbjct: 107 AALQAGDK-DAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDV 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
S+D DSL FG+PR R+L RK+P V L+ L LT +Q
Sbjct: 166 EYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQL 225
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ IL G DY + ++G+G + AL I+ +G I L+ + + +E R F
Sbjct: 226 IDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDHV------EEIRNFF 279
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V D +I++ PD E I FL E+ F+ +RV KA+EK+KA KS+Q LE
Sbjct: 280 LNPPVTDD---YRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKAL--KSTQATLER 334
Query: 293 FF 294
+F
Sbjct: 335 WF 336
>gi|340344625|ref|ZP_08667757.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519766|gb|EGP93489.1| Flap structure-specific endonuclease [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 341
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/303 (36%), Positives = 173/303 (57%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R I L G+KP+YVFDG+PP LK E+ +R + DAT
Sbjct: 47 LSDSEGRITSHLSGLLYRNINFLSLGIKPVYVFDGKPPSLKTAEIERRKQIKKDATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+ GN ED KF+++T + + K++L G+P ++A SE EA A L +GQ
Sbjct: 107 KAIAEGNLEDARKFAQQTTSMKDGMVKESKQILSYFGIPYIDAASEGEATAAHLTNTGQA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
YA AS+D DS+ GA R +R+ + RKIP E K L+ L +T +Q
Sbjct: 167 YASASQDFDSILCGAKRLIRNFTNSGRRKIPNRNTYVEIEPEIIETQKTLDSLEITREQI 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+D+ IL G D+ + IG +TALK+I+Q+ +E I + +E+ Q E Y++ R++
Sbjct: 227 VDIGILIGTDFNPNGFDRIGPKTALKMIKQYSRLEDIPQ--IQEQLQTIE---YEKIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F EP +VTD + +I + D EG+ N+LV E F+ DR+ ++ +++ A K S L+
Sbjct: 282 FLEP-IVTDVD--EIVFGKVDYEGMTNYLVKERSFSEDRIQSSLNRLRKALEKKSHN-LD 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|336477791|ref|YP_004616932.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
gi|335931172|gb|AEH61713.1| flap structure-specific endonuclease [Methanosalsum zhilinae DSM
4017]
Length = 337
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 169/303 (55%), Gaps = 23/303 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ R L+E G++P++VFDG PPD K + L KR R A
Sbjct: 47 LMDSGGMVTSHLSGILYRFTNLIEEGIRPVFVFDGTPPDFKSKTLDKRRKVRETAHSRWD 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G +++ K+++ +VK+ + K LL +MG+PVV+AP E EAQ A + KSG
Sbjct: 107 EAREKGLEKEAYKYAQASVKLDSYVIESSKTLLSIMGIPVVQAPCEGEAQAAHMVKSGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
VAS+D DSL FGAP +R++ RK+P V++ E + L ++ +T
Sbjct: 167 NYVASQDYDSLLFGAPFVIRNIAITGKRKLPGKDAYVDVKPEVIDLEHS--LGQMGITHP 224
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q +D+ + G DY + + IG + AL+L+++HG IE++L + +E + + R
Sbjct: 225 QLVDIALCVGTDYNNGLENIGQKRALELVKKHGDIESVLRKLGKEIDDL------ESIRD 278
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V D + I W PD + LI+FL +E+ F+ +RV KA E+I A S Q L
Sbjct: 279 FFLNPPVTDDYD---IIWQKPDHDRLIDFLCNEHDFSRERVAKAWERIIAVSG-SQQKTL 334
Query: 291 ESF 293
+ F
Sbjct: 335 DQF 337
>gi|288931681|ref|YP_003435741.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
gi|288893929|gb|ADC65466.1| flap structure-specific endonuclease [Ferroglobus placidus DSM
10642]
Length = 336
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 175/304 (57%), Gaps = 25/304 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R L+E G+KPIYVFDG+PP+ KK+EL +R + +A +
Sbjct: 47 LKDSQGRITSHLSGLLYRNANLIEIGIKPIYVFDGEPPEFKKKELERRAELKKEAEEKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+EAG ED +K+++ T KV + + K LL+ +G+P V+APSE EAQ A + + G
Sbjct: 107 IALEAG--EDAKKYAQATAKVDEYIVESSKTLLEYLGIPYVQAPSEGEAQAAYMVRKGDA 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
S+D DSL FG+P+ R+L RK+P +++ E L++L +T +
Sbjct: 165 DYTGSQDYDSLLFGSPKLARNLTVTGKRKLPGKNVYVEIKPEIIDLEAN--LKKLGITRE 222
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q ID+ IL G DY + ++GIG + ALK ++ +G ++ +L+ + E + E R
Sbjct: 223 QLIDVAILVGTDYNEGVKGIGAKKALKYVKTYGDVKKVLKVLRVEIEHL------DEIRE 276
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P D E IK+ P ++ +I FL E+ F+ +RV KA+E+I+ + SSQ L
Sbjct: 277 FFLNPPTTDDYE---IKFRKPKKDKVIEFLCEEHDFSRERVEKAVERIEENIS-SSQITL 332
Query: 291 ESFF 294
+ +F
Sbjct: 333 DRWF 336
>gi|340624624|ref|YP_004743077.1| flap endonuclease-1 [Methanococcus maripaludis X1]
gi|339904892|gb|AEK20334.1| flap endonuclease-1 [Methanococcus maripaludis X1]
Length = 324
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/295 (38%), Positives = 171/295 (57%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ G++TS G+F +TI +LE GM PI+VFDG+ +LK++ +R R A D
Sbjct: 47 LKNKNGDITSTYNGIFYKTIYMLENGMTPIWVFDGKSHELKEKTKEERRKSREGALDSYM 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + ++ D+ K+LL+LMG+P V APSE EAQCA L K+
Sbjct: 107 EAKEQNNLEEMQKYAKRANFLDRKTVDNSKKLLELMGIPYVNAPSEGEAQCAELVKANNA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D DS+ +GA ++++ S++ I ++E E K L LN++ DQ ID IL G
Sbjct: 167 FCVISQDYDSILYGADYVVKNIT-SSNKDIELIELE--KTLSGLNISCDQLIDAAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++G G + A+ +++ G +E + I Y E R++F EP V TD
Sbjct: 224 DYNPGGLKGFGPKKAIDTVKK-GKMENYISEIEN----------YSEIRKIFDEPNVTTD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ I P ++ L FL+ EN F+ DR+ IEKI NK SQ LE++F
Sbjct: 273 YD---ITLKTPKKDELAEFLIEENDFSKDRILPNIEKISNLLGNKKSQKSLEAWF 324
>gi|410924704|ref|XP_003975821.1| PREDICTED: probable flap endonuclease 1 homolog [Takifugu rubripes]
Length = 297
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 151/250 (60%), Gaps = 24/250 (9%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
S L G+F R + LE +KP++VFDG+PP K+ L KR + + N++
Sbjct: 50 SPLIGVFFRALTFLEHDIKPVFVFDGRPPGEKRAVLEKRAE---------SAGWRSPNRK 100
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
S R DC +LLKL+GVPV++AP +AEA CA L K G V AVASEDMD
Sbjct: 101 GTASSSTR----------DCLQLLKLIGVPVIQAPGDAEALCAWLVKEGTVDAVASEDMD 150
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+L FGA +R L S + V+E+ ++K+LE L + +F+DLCIL GCDYC+ I G+
Sbjct: 151 TLPFGASILIRQLN--SKKDGEVIEYSLSKLLERLQINHQEFVDLCILLGCDYCEKICGL 208
Query: 191 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 250
G + AL LI++H +IE ++ ++NR+ + +P W Y+EAR++F + E ++ W+
Sbjct: 209 GPKRALTLIQKHRTIENVILHVNRKTHPVPLFWKYKEARKIFLD---APRTEPAELTWTE 265
Query: 251 PDEEGLINFL 260
PDEE L+ FL
Sbjct: 266 PDEEALVEFL 275
>gi|284162570|ref|YP_003401193.1| XPG I domain-containing protein [Archaeoglobus profundus DSM 5631]
gi|284012567|gb|ADB58520.1| XPG I domain protein [Archaeoglobus profundus DSM 5631]
Length = 335
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 174/304 (57%), Gaps = 26/304 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R ++E G+KPI+VFDG+PP+ KK+E+ +R R +A
Sbjct: 47 LMDSKGRITSHLSGILYRVSNMVEVGIKPIFVFDGEPPEFKKKEIERRRKIREEAEIKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ + K++++ V+V + + K+LL LMG+P+V+APSE EAQ A + + G
Sbjct: 107 TALDIA---EARKYAQQAVRVDEYIIESSKKLLNLMGIPIVQAPSEGEAQAAYIVRKGDA 163
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
S+D DSL FG+PR R+L RK+P V++ E L++L +T +
Sbjct: 164 DYTGSQDYDSLLFGSPRLARNLAITGRRKLPGKNVYTEVKPEVIDLEYN--LKKLGITRE 221
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q ID+ +L G DY + + GIG + A K ++ +G I +L + ++ + P +E R
Sbjct: 222 QLIDIALLVGTDYNEGVEGIGVKKAYKYVKAYGDIFKVLRVL-----KVKVEEPIEEIRN 276
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V D E IK+ P+ +G+I FL E+ F+ +RV KA+EK++A KS Q L
Sbjct: 277 FFLNPPVTDDYE---IKFREPNVDGIIEFLCEEHDFSRERVEKAVEKLRAI--KSDQLTL 331
Query: 291 ESFF 294
+ +F
Sbjct: 332 DRWF 335
>gi|333910543|ref|YP_004484276.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
gi|333751132|gb|AEF96211.1| Flap structure-specific endonuclease [Methanotorris igneus Kol 5]
Length = 326
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 179/295 (60%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TS G+F +TI +LE + P++VFDG+PP LK++ +R R A ++
Sbjct: 47 LRNRKGEITSTYNGIFYKTIYMLENDITPVWVFDGKPPKLKEKTREERRKMREKAKEEFT 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E N ++++K++KR +TK ++ K+LL LMGVP V AP+E E Q + + K G V
Sbjct: 107 KAKEMENIDEMQKYAKRMNFLTKDIVENSKKLLDLMGVPYVNAPAEGEGQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D D+L +GAPR +R+L ++ K + E+ +L EL ++ D ID+ IL G
Sbjct: 167 FCVISQDYDALLYGAPRIVRNL---TATKEELELIELENVLNELGISHDDLIDMAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + AL++++ N+E Y + Y+E + +FK P+ VTD
Sbjct: 224 DYNPKGVKGIGPKKALEIVKSK----------NKELY-LKAVENYEEIKNIFKNPK-VTD 271
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
E +++K PD+EG+I FLV EN F+ +RV +EK+ K + K+ Q L+++F
Sbjct: 272 EYSIKLK--KPDKEGIIKFLVEENDFSMERVQPHVEKLCKLIEKKTKQVTLDAWF 324
>gi|219850742|ref|YP_002465174.1| flap endonuclease-1 [Methanosphaerula palustris E1-9c]
gi|254788674|sp|B8GIA0.1|FEN_METPE RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|219545001|gb|ACL15451.1| XPG I domain protein [Methanosphaerula palustris E1-9c]
Length = 333
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 164/295 (55%), Gaps = 18/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G +TSHL G+F RT+R LE G++P+Y+FDG+PP LK++ + R R +A
Sbjct: 48 LMNSEGRITSHLSGVFFRTLRFLEKGIRPVYIFDGKPPALKQETIESRREVRREAGVQWE 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+ G++E+ K ++ + +VT + K LL LMGVP V+APSE EAQ A++ SG V
Sbjct: 108 AALARGDQEEAYKQARASSRVTPEIIATSKELLTLMGVPCVQAPSEGEAQAASMAASGAV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-------KILEELNLTMDQFID 174
S+D DSL FGAP +R+L S R++ V ++L L +T +Q I+
Sbjct: 168 TYAVSQDYDSLLFGAPLLVRNLTVSSKRRVQGRTIAVQPESIRLDEVLGGLGITREQLIE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
IL G D+ IRG+G +TALK++++ G + I E + D+ + F+
Sbjct: 228 AGILIGTDFNPGIRGVGPKTALKIVKKDGFADMIAEKL--------PDFDPSPILQFFRS 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
P V+ + L + W PD+ G+ + L E GF ++RV A++KI + + R
Sbjct: 280 PPVIAN---LSLDWQPPDQAGIEDLLCGEYGFATERVRTALQKISGPPGQKTLDR 331
>gi|150399374|ref|YP_001323141.1| flap endonuclease-1 [Methanococcus vannielii SB]
gi|150012077|gb|ABR54529.1| XPG I [Methanococcus vannielii SB]
Length = 324
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 176/295 (59%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N +GE+TS G+F +TI +LE + PI+VFDG+ DLK++ R R +A ++
Sbjct: 47 LKNRSGEITSTYNGIFYKTIYMLENEITPIWVFDGKSHDLKEKTKEDRRKLRQNALENYL 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E N E+++K++KR + K+ ++ KRLL+LMGVP + APSE EAQCA L KS
Sbjct: 107 EAKEQDNLENMQKYAKRANFLDKKTIENSKRLLELMGVPYINAPSEGEAQCAELVKSKNA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
V S+D DS+ +GA ++++ S++ + ++ E++K+L ELN+ + + ID+ IL G
Sbjct: 167 SFVVSQDYDSILYGAESVVKNIT-SSNKSLELI--ELSKVLTELNVNLLELIDVAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY I+GIG + A +++++ E+Y E Y E R++F EP V+TD
Sbjct: 224 DYNPGGIKGIGPKKAFEVVKKG----------QMEKYAF-EIQNYSEIRKIFDEPNVITD 272
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK-AAKNKSSQGRLESFF 294
E I P ++ LI FLV EN F+ +RV IEK+ NK SQ LES+F
Sbjct: 273 YE---IGLKLPRKDELIEFLVEENDFSKERVLPNIEKLDLLLGNKKSQKSLESWF 324
>gi|305662518|ref|YP_003858806.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
gi|304377087|gb|ADM26926.1| flap endonuclease 1 [Ignisphaera aggregans DSM 17230]
Length = 354
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 181/307 (58%), Gaps = 20/307 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI LE G+KPIYVFDG+PP++K++EL +R ++ A
Sbjct: 51 LMDSKGRITSHLSGLFYRTINFLENGIKPIYVFDGKPPEIKRKELEQRRIRKERAAKMAE 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A GN E+ K+ + + +T + + K LL MG+PV++A E EA+ A + K G
Sbjct: 111 KAYSEGNIEEASKYVVQAIFLTDEMVKEAKELLDAMGIPVIQAAEEGEAEAAYIAKKGLA 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FGAPR +R+L RK+P + E+ K+L+ L +T +Q
Sbjct: 171 WATASQDYDSLLFGAPRLVRNLTITGKRKLPGKDIYIEIKPEIIELEKLLKTLGITHEQL 230
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D + GIG +TA +LI+ +GS+E I+++ + I ED + +
Sbjct: 231 IDIAILIGTDYNPDGVEGIGPKTAYQLIKAYGSLEKIIKSPHGS--HISED--LIKIKNY 286
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR-- 289
F P VV E +I+W PD + + LV E+ F+ DRV A+++++ A + +GR
Sbjct: 287 FLNPVVVDVE---RIEWKEPDTNRIKDLLVREHDFSIDRVENALKRLEKAYREYIKGRPS 343
Query: 290 -LESFFK 295
L+ +FK
Sbjct: 344 SLDQWFK 350
>gi|408404695|ref|YP_006862678.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365291|gb|AFU59021.1| flap structure-specific endonuclease [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 341
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 177/303 (58%), Gaps = 19/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TSHL G+F R LL +K +YVFDG+ +LK E+ +R + +AT+
Sbjct: 47 LANSKGEITSHLSGLFYRNANLLGDNIKLVYVFDGKANELKMAEIQRRSQLKKEATEKYQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVE G ED K+ RT +T + ++ K+LL +G+P ++APS+ EA A L +
Sbjct: 107 LAVEEGRIEDARKYGIRTAVLTDKMVEESKKLLSYLGIPYIQAPSDGEAAAAYLTRRELA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DS+ FGA + +R+L RK+P FE K+L+E+ LT +Q
Sbjct: 167 FAAASQDYDSILFGAKKLVRNLAISGKRKVPNRNVYIDVEPEIFEHDKVLQEIGLTHEQL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ GIG +TALKLI+++G LEN+ + ++ +P+ PYQE R +
Sbjct: 227 IDVGILIGTDFNPGGFPGIGPKTALKLIKENGK----LENVEKIKHLLPK-MPYQEIRDI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F +PEV + +I + + E +++FL + F++DRV+ ++K++ + SQ LE
Sbjct: 282 FLKPEVPKVD---RIDFGEVNREKVLDFLCVDKSFSADRVSSTLDKLQKSIANRSQS-LE 337
Query: 292 SFF 294
+F
Sbjct: 338 QWF 340
>gi|294496492|ref|YP_003542985.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
gi|292667491|gb|ADE37340.1| flap endonuclease 1 [Methanohalophilus mahii DSM 5219]
Length = 339
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 174/302 (57%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R L EAG+KP++VFDG+PPD K +++R R +A
Sbjct: 47 LKDSRGNITSHLSGILYRMTNLFEAGIKPVFVFDGKPPDFKADTISQRKKSREEALTKWD 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G ED+ K+++ + KV +D +LL MG+P V+APSE EAQ A + G
Sbjct: 107 EAKEKGLSEDVYKYAQASSKVDALIVEDSMQLLDYMGIPCVQAPSEGEAQAAYMVNKGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP----VMEFEVAKI-----LEELNLTMDQF 172
AS+D DSL FGAPR +R+L RK+P ++ E I ++ L++ Q
Sbjct: 167 DYSASQDYDSLLFGAPRVIRNLTITGKRKLPGKNVYIDVEPESIDLMQNIKLLDIDRRQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + + G DY + +G +TALKLI+Q+GSI ILE+ R ++ ++ +A+ F
Sbjct: 227 IGIALCVGTDYNKGLEKVGPKTALKLIKQYGSIHKILEH----RGEVIDEL---DAKIDF 279
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
VTD +L KW +P +E +++FL ++ F+ +RV KA+++++ A + SQ L+
Sbjct: 280 FLNPPVTDAYEL--KWKSPQKEKIVDFLCKQHDFSEERVLKAVDRLEKAGKQQSQQTLDQ 337
Query: 293 FF 294
+F
Sbjct: 338 WF 339
>gi|255634418|gb|ACU17574.1| unknown [Glycine max]
Length = 151
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/99 (88%), Positives = 97/99 (97%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTNEAGEVTSHLQGMF+RTIRLLEAG+KP+YVFDG+PPDLKKQELAKRYSKRA+AT+DL
Sbjct: 53 MLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRAEATEDL 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 99
+EA+E NKEDIEKFSKRTVKVTKQHNDDCKRLL+LMGV
Sbjct: 113 SEALETANKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGV 151
>gi|385805407|ref|YP_005841805.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
gi|383795270|gb|AFH42353.1| flap endonuclease-1 [Fervidicoccus fontis Kam940]
Length = 350
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 175/309 (56%), Gaps = 26/309 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI L+EAG+KPIYVFDG PP LK++EL KR + +A
Sbjct: 53 LIDNKGRVTSHLSGIFYRTINLIEAGIKPIYVFDGLPPSLKEKELEKRRKVKEEAAKKYQ 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+ E+ K+++ + ++ + + +LL MG+P V+AP+E EAQ A + K G V
Sbjct: 113 VAIAEEKYEEARKYAQISTRLNDEMVKEAIKLLDAMGLPTVQAPAEGEAQAAYMAKKGDV 172
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
++ S+D DS+ FG+PR +R+L RK+P V+E V I E+L + +
Sbjct: 173 WSSGSQDYDSILFGSPRVVRNLTVSGKRKLPKKDVYIDIKPEVIESNV--IYEKLGINRE 230
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
+ I + I+ G DY D I+G+G +TALK+++ + E IL+++ + + Y E
Sbjct: 231 KLIIIGIMLGTDYNPDGIKGVGIKTALKIVKSYEKTEEILKSLPQTQVD------YYEIF 284
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA--KNKSSQ 287
F PEV + I+W P E + LV E+ FN RV AIE+++ + +N SQ
Sbjct: 285 NYFMNPEVT---DNYTIQWKEPSVEKIKEILVEEHDFNEARVENAIERLQKSFKENVKSQ 341
Query: 288 GR-LESFFK 295
+ L+ +FK
Sbjct: 342 TKGLDFWFK 350
>gi|333986804|ref|YP_004519411.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
gi|333824948|gb|AEG17610.1| Flap structure-specific endonuclease [Methanobacterium sp. SWAN-1]
Length = 328
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 172/293 (58%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +TSH G+ RT L+E G+KP+YVFDG LKK AKR + +
Sbjct: 47 LMDHNKNITSHFSGILYRTSSLIEKGIKPVYVFDGISSYLKKGTQAKRREVKEKSEKRWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ GN E+ K++ R+ +++ + K+LL LMG+P ++A E EAQ + + + G
Sbjct: 107 AALDEGNTEEARKYAVRSSRMSSDVIEGSKKLLSLMGIPHIQAMGEGEAQASYMVEKGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D D + FGA R +++L + K + E+ K+LE L +T +Q ID+ IL+G
Sbjct: 167 WCVGSQDYDCVLFGATRMVKNLT-ITGGKANLELIELKKVLERLEITREQLIDVAILAGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + ++GIG + LKL+++HG I IL+++ E P R +F + +V+TD
Sbjct: 226 DFNEGVKGIGAKKGLKLVKEHGDIFNILDHMKIELEVDP-----NILRDMFLKHDVLTDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +KW +PD+ G+I++L ++ F+ DRV+ A+EK+K K +Q LE +F
Sbjct: 281 E---LKWRSPDKSGVIDYLCGDHDFSEDRVSSALEKLK--KLDMNQSSLEKWF 328
>gi|288559640|ref|YP_003423126.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
gi|288542350|gb|ADC46234.1| flap endonuclease Fen [Methanobrevibacter ruminantium M1]
Length = 328
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 175/294 (59%), Gaps = 13/294 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT +++ G+KP+YVFDG + K + + KR + R +A
Sbjct: 47 LMDANGNVTSHLSGILYRTASIVDKGIKPVYVFDGDVSEYKTKTVEKRRALREEANQKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA AGN E+ K++ R+ +++ + K+LL+ MG+P V+A E EAQ A + K+G
Sbjct: 107 EAKAAGNIEEARKYAIRSSRLSPYIIESSKKLLEYMGIPYVQAKGEGEAQGAYMVKNGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSG 180
+AVAS+D D L FGAPR +R+L S + +E+ E+ K+L E++L+ +Q +D+ ++ G
Sbjct: 167 WAVASQDYDCLLFGAPRIIRNL--TLSGGLSNLEYLELDKVLTEIDLSREQLVDVALMVG 224
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + I GIG +T LKLIRQ+ S+E IL ++ D E R +F +V TD
Sbjct: 225 TDFNEGIYGIGAKTGLKLIRQN-SLEDILVQKGITDVEVEPD----ELREIFLSHDVNTD 279
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+IK+ + D+E L F+ E+GF+ RV +K+K K S+Q LE +F
Sbjct: 280 ---YKIKFKSADKEKLCEFMCEEHGFSETRVLNVADKLK--KLSSTQKSLEDWF 328
>gi|255513611|gb|EET89877.1| XPG I domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 352
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 172/305 (56%), Gaps = 12/305 (3%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L +E G VTSHL G+F R+I L+ G+ +YVFDG P LKK+ + R S+R A +
Sbjct: 49 LLCDEKGNVTSHLSGLFYRSIDLIAKGVNLVYVFDGMPSTLKKKTIEARISRREKAYEAW 108
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+AV G E++ KF++ + ++TK+ K LL MG+ + APSE EAQ + +C G
Sbjct: 109 QKAVAEGQAEEVRKFAQASTRITKEIVSSAKELLGYMGIWYINAPSEGEAQASYMCSKGI 168
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQ 171
YA AS+D D+L FG+ + +R+L RK+P ++ L L +T +
Sbjct: 169 AYAAASQDYDTLLFGSKKVVRNLTLSGRRKLPGKNVFVNVNPEMVDLDATLGSLGITRQK 228
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G D+ D ++G+G +TALK ++ SI I+E ++++ + ++ L
Sbjct: 229 LIWIGILLGTDFNDGVKGVGPKTALKAVKSSNSITDIIE-FAKQKFNYEFEVDPKDVEDL 287
Query: 232 FKEPEV--VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
F PEV +T+ E + +PD E +I+F+ +E+GF+ RV K + +K A+ S+Q
Sbjct: 288 FMHPEVSEITEAELGKGVSKSPDAEKIIHFMCAEHGFDEARVRKFSDVLKKARGTSAQKG 347
Query: 290 LESFF 294
+ S+
Sbjct: 348 ISSWM 352
>gi|395646325|ref|ZP_10434185.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
gi|395443065|gb|EJG07822.1| Flap structure-specific endonuclease [Methanofollis liminatans DSM
4140]
Length = 333
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 162/294 (55%), Gaps = 18/294 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ G VTSHL G+F R + LE G++P Y+FDG PPDLK + +A+R R A +
Sbjct: 48 LMDKDGRVTSHLSGIFFRNLNFLEKGIRPAYIFDGAPPDLKTETVARRRGVREAAGERWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G+ E+ K ++ + ++ KRLL LMG+P + APSE EAQ A + + G V
Sbjct: 108 EAVERGDIEEAYKQARASTRIDDAMIASSKRLLDLMGIPWMVAPSEGEAQAAFMARQGDV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-------AKILEELNLTMDQFID 174
A AS+D D+L FGAPR +R+L RK+ V A +L L L+ ++ ++
Sbjct: 168 GAAASQDYDALLFGAPRLVRNLTVSGKRKVRGRSVTVRPERIDLAAVLAGLGLSREELVE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ IRG+G +TALK++R ET+ +E+ + P QE F
Sbjct: 228 IGILIGTDFNPGIRGVGAKTALKIVRGGKFQETV-----QEKAPDFDPGPVQE---FFLN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
P V D +++W PD +G++ L E F+ R+ ++KI A + + G
Sbjct: 280 PPVTGD---YRLEWREPDRDGIVAMLCGEYTFSEGRIDAGLQKIGAKAGQRTLG 330
>gi|147920854|ref|YP_685339.1| flap endonuclease-1 [Methanocella arvoryzae MRE50]
gi|121690538|sp|Q0W6I0.1|FEN_UNCMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|110620735|emb|CAJ36013.1| flap structure-specific endonuclease [Methanocella arvoryzae MRE50]
Length = 340
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 170/304 (55%), Gaps = 21/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ G VTSHL G+ R L+E GMKP++VFDG+PP K + + R R +A +
Sbjct: 47 LADDRGNVTSHLSGIIYRVTNLVEEGMKPVFVFDGKPPSFKAETIKARAEVR-EAARQMY 105
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA +A + K+++ + + +Q DD K LL MG+P + APSE EAQ A + G
Sbjct: 106 EAAKAAGSAEAYKYAQASTSINRQIVDDAKVLLGYMGIPFIVAPSEGEAQAAYMVSRGAA 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP----VME-----FEVAKILEELNLTMDQF 172
V S+D DSL FGAPR +R++ RK+P M+ E+ ++L L LT ++
Sbjct: 166 DYVGSQDYDSLLFGAPRVVRNIAITGKRKVPRKNIYMDVKPEVIELQEVLATLGLTREEL 225
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHG-SIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY I +G +TALKL+++HG ++ IL+ + Q E+W + +
Sbjct: 226 IDMAILVGTDYNPGIFKVGPKTALKLVKKHGDNMPAILDELG----QTIENW--EAIKEF 279
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-QGRL 290
F P V D Q+KW P+ + FL E+ F+ DRV K +E++ A ++++ Q L
Sbjct: 280 FLHPTVTDD---YQVKWGKPEPAKIKEFLCEEHSFSVDRVDKVLERLTTAVSETTKQKTL 336
Query: 291 ESFF 294
S+F
Sbjct: 337 SSWF 340
>gi|76364187|sp|Q4JAN1.2|FEN_SULAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
Length = 349
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 182/307 (59%), Gaps = 18/307 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI ++E+G+ PI+VFDG+PP+ K +E+ +R + +A L
Sbjct: 47 LIDSKGRITSHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A G +I K+++ V+++ + ++ K+LL MG+PVV+AP E EA+ A +
Sbjct: 107 KAKLEGEYREIRKYAQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLS 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FGA R +R++ RK+P + E+ +L++L + +Q
Sbjct: 167 WAAASQDYDSLLFGAKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQL 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D ++GIG +TAL++I+++ +IE +E + +I ++ +E R+L
Sbjct: 227 IDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKGEIQLSKI--NFDIREIRKL 284
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQ 287
F PEV E+L++ + +E +I LV + FN DRV IE+ IK AK+ Q
Sbjct: 285 FITPEVKKPTERLEL--AECNEREIIELLVKNHDFNEDRVNNGIERLKKAIKEAKSVEKQ 342
Query: 288 GRLESFF 294
L+ +F
Sbjct: 343 TGLDQWF 349
>gi|70606571|ref|YP_255441.1| flap endonuclease-1 [Sulfolobus acidocaldarius DSM 639]
gi|449066790|ref|YP_007433872.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449069063|ref|YP_007436144.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
gi|68567219|gb|AAY80148.1| XPG/RAD25 related endonuclease [Sulfolobus acidocaldarius DSM 639]
gi|449035298|gb|AGE70724.1| flap endonuclease-1 [Sulfolobus acidocaldarius N8]
gi|449037571|gb|AGE72996.1| flap endonuclease-1 [Sulfolobus acidocaldarius Ron12/I]
Length = 331
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 182/307 (59%), Gaps = 18/307 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RTI ++E+G+ PI+VFDG+PP+ K +E+ +R + +A L
Sbjct: 29 LIDSKGRITSHLNGLFYRTISIIESGIIPIFVFDGKPPEKKSEEIERRKRAKEEAEKKLE 88
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A G +I K+++ V+++ + ++ K+LL MG+PVV+AP E EA+ A +
Sbjct: 89 KAKLEGEYREIRKYAQAAVRLSNEMVEESKKLLDAMGIPVVQAPGEGEAEAAYINSIDLS 148
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FGA R +R++ RK+P + E+ +L++L + +Q
Sbjct: 149 WAAASQDYDSLLFGAKRLVRNITISGKRKLPNKDVYVEIKPELIELESLLKKLGINREQL 208
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G DY D ++GIG +TAL++I+++ +IE +E + +I ++ +E R+L
Sbjct: 209 IDIAILIGTDYNPDGVKGIGVKTALRIIKKYNNIENAIEKGEIQLSKI--NFDIREIRKL 266
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK----IKAAKNKSSQ 287
F PEV E+L++ + +E +I LV + FN DRV IE+ IK AK+ Q
Sbjct: 267 FITPEVKKPTERLEL--AECNEREIIELLVKNHDFNEDRVNNGIERLKKAIKEAKSVEKQ 324
Query: 288 GRLESFF 294
L+ +F
Sbjct: 325 TGLDQWF 331
>gi|261349732|ref|ZP_05975149.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
gi|288861687|gb|EFC93985.1| DNA repair protein RAD2 [Methanobrevibacter smithii DSM 2374]
Length = 327
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 171/293 (58%), Gaps = 12/293 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R ++E +KPIYVFDG P LK++ + +R R ++
Sbjct: 47 LSDSNGNITSHLSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ + ++ K++ R+ K++ + K+LL +MG+P +EA E EAQ A L ++G
Sbjct: 107 EALAKQDTQEARKYAMRSSKLSPYIIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVAS+D D L FGA R +R+L +S + + + ++L+EL++ +Q ID+ IL G
Sbjct: 167 WAVASQDYDCLLFGAKRVVRNLA-INSNLGDLEYYNLKRVLDELDINREQLIDMGILIGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + ++G+G +TALKL ++ G +E L + E E R +F V TD
Sbjct: 226 DFSEGLKGVGAKTALKLAKK-GELENKLAKLQEESSH-----DISEVREIFLNHNVNTD- 278
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+I+W P + +I+FL E+GF+ DRV+KA +K+K SSQ LE +F
Sbjct: 279 --YKIRWKKPAKNDIIDFLCEEHGFSQDRVSKACDKLKNL--NSSQKSLEDWF 327
>gi|119719343|ref|YP_919838.1| flap endonuclease-1 [Thermofilum pendens Hrk 5]
gi|119524463|gb|ABL77835.1| flap endonuclease 1 [Thermofilum pendens Hrk 5]
Length = 341
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 118/302 (39%), Positives = 177/302 (58%), Gaps = 26/302 (8%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRL-LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
+ TN GEVTSHL G+ +R RL E I+VFDG P LK +EL KR +R A +
Sbjct: 46 LFTNSRGEVTSHLIGLLSRYSRLAYEYDASFIFVFDGSPHPLKARELEKRKKQREKAKQE 105
Query: 60 LAEAVEAGNKEDIEK-FSKRTV--KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC 116
AE + G D+ K FSK V +V + + KRL++LMG PVV+A +AEAQ A L
Sbjct: 106 YAELLSKG---DLRKAFSKAVVSAEVDDRIVESTKRLVRLMGFPVVDAVHDAEAQAAYLV 162
Query: 117 KSGQVYAVASEDMDSLTFGAPRFLRHL------MDPSSRKIPVMEFEVAKILEEL----N 166
K G+ +AV+S D DSL +G+PR +R+L PS +K + E+ LEEL
Sbjct: 163 KRGEAWAVSSMDWDSLLYGSPRLVRYLTLTGFEWLPSKQKARKLIPELV-TLEELLSGHG 221
Query: 167 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ 226
+T+ Q +D+ IL G DY + ++G+G ALK+I+++GS+E + ++ R +PE+ Y+
Sbjct: 222 ITLRQLVDIAILVGTDYNEGVKGVGPLRALKMIKRYGSLENLPVSVRR---HLPEN--YE 276
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
R++F P + E+ + +S PD+EGL+ FLV EN F+ RV + +++AA +
Sbjct: 277 AVRQIFLNPPL---NEKYSLSFSPPDKEGLMKFLVDENDFSPKRVEVYLRRLEAAYERRK 333
Query: 287 QG 288
G
Sbjct: 334 GG 335
>gi|383320867|ref|YP_005381708.1| flap endonuclease 1 [Methanocella conradii HZ254]
gi|379322237|gb|AFD01190.1| flap endonuclease 1 [Methanocella conradii HZ254]
Length = 339
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 163/303 (53%), Gaps = 20/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E G+VTSHL G+ R L+E G+KP++VFDG+PP LK + + R R A
Sbjct: 47 LVDEKGQVTSHLSGIIYRVTNLIELGIKPVFVFDGKPPLLKAETIKARAEVREAARQMYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVE G+ E K+++ + Q +D K LL MG+P + APSE EAQ + + G
Sbjct: 107 AAVEEGSAEAY-KYAQAATSINAQIIEDSKTLLGYMGIPFIVAPSEGEAQASCMVSKGAA 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF---------EVAKILEELNLTMDQF 172
V S+D DSL FGAPR +R++ RK+P E+ + LE L++T +Q
Sbjct: 166 DYVGSQDYDSLLFGAPRMVRNVTITGRRKVPRRNIYVDVKPEIVELKETLETLDITREQL 225
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ IL G D+ I +G +TALKL+++H +++ + + Q E+ Y+E + F
Sbjct: 226 IDIGILVGTDFNPGIYKVGPKTALKLVKKHKNMQEVFGELE----QTIEN--YEEIKEFF 279
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLE 291
P V D I W P+ + +FL E+ F+ DRV K +E++ KA Q L
Sbjct: 280 LHPPVTDD---YHIAWGRPEPAKIKHFLCDEHSFSQDRVEKVVERLEKAVVETGKQKTLS 336
Query: 292 SFF 294
++F
Sbjct: 337 AWF 339
>gi|148642785|ref|YP_001273298.1| flap endonuclease-1 [Methanobrevibacter smithii ATCC 35061]
gi|166973703|sp|A5UL52.1|FEN_METS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|148551802|gb|ABQ86930.1| DNA repair flap structure-specific 5'-3' endonuclease
[Methanobrevibacter smithii ATCC 35061]
Length = 327
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 171/293 (58%), Gaps = 12/293 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L++ G +TSHL G+ R ++E +KPIYVFDG P LK++ + +R R ++
Sbjct: 47 LSDSNGNITSHLSGILYRNSSMIEKDIKPIYVFDGTPSYLKQETIDQRRQTREESEKKWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ + ++ K++ R+ K++ + K+LL +MG+P +EA E EAQ A L ++G
Sbjct: 107 EALAKQDTQEARKYAMRSSKLSPYIIESSKKLLTMMGIPYIEAYGEGEAQAAYLVENGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVAS+D D L FGA R +R+L S+ + + + ++L+EL++ +Q ID+ IL G
Sbjct: 167 WAVASQDYDCLLFGAKRVVRNLAINSNLG-DLEYYNLKRVLDELDINREQLIDMGILIGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + ++G+G +TALKL ++ G +E L + E E R +F V T+
Sbjct: 226 DFSEGLKGVGAKTALKLAKK-GELENKLAKLQEESSH-----DISEVREIFLNHNVNTN- 278
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+I+W P + +I+FL E+GF+ DRV+KA +K+K SSQ LE +F
Sbjct: 279 --YKIRWKKPAKNDIIDFLCEEHGFSQDRVSKACDKLKNL--NSSQKSLEDWF 327
>gi|397780742|ref|YP_006545215.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
gi|396939244|emb|CCJ36499.1| flap endonuclease-1 [Methanoculleus bourgensis MS2]
Length = 333
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 167/300 (55%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N AG VTSHL G+ RT+ LE G+KP++VFDG+PP+ K++ + +R R A +
Sbjct: 48 LMNGAGRVTSHLSGILFRTVNFLEKGIKPVFVFDGKPPEFKQETIEQRREVRNRANEAWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A++ G+ E+ K + + ++ + + LL L+G+PVV+APSE EAQ A + +SG V
Sbjct: 108 AALKEGDMEEAYKQASASTRIDRHIIESSHELLDLLGIPVVQAPSEGEAQAAHMVRSGGV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRK-------IPVMEFEVAKILEELNLTMDQFID 174
S+D DSL FG+P +R+L RK + F ++ +L+ L +T +Q I+
Sbjct: 168 TYAVSQDYDSLLFGSPVLVRNLTVSGRRKARGRTITVNPERFVLSSVLDRLGVTREQLIE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ IRG+GG+TALK++R G E+++ + D+ R F+
Sbjct: 228 IGILVGTDFNPGIRGVGGKTALKVVRS-GEFESLIA-------EKQPDFDPGPIREFFQN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P + D ++W PD E ++ L F+ DRV A+ K+ K++Q L+++F
Sbjct: 280 PPITDD---YALEWRTPDVERVVEMLCGRYDFSEDRVRNALTKVSV---KATQKTLDAWF 333
>gi|410670767|ref|YP_006923138.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409169895|gb|AFV23770.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 338
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 165/304 (54%), Gaps = 23/304 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R L+EAG++P++VFDG+PP +K + KR R +A
Sbjct: 47 LKDSKGNITSHLSGLLYRMSSLMEAGIRPVFVFDGKPPQMKSPTIEKRVQARENAQMKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E G E+ K+++ + +V +D ++LL MG+P ++APSE EAQ A +
Sbjct: 107 QAQEEGLAEEAYKYAQASSRVDATIVEDSRKLLNAMGIPFLDAPSEGEAQAAYMVIKRDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
S+D DSL FGAPR +R+L RK+P VME E + L L++T +
Sbjct: 167 DYAGSQDYDSLLFGAPRVVRNLTVSGKRKLPKKNLYVDVKPEVMELE--ETLLGLDVTRE 224
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q ID+ + G DY I IG + ALKL+++HGSIE IL + E IP+ +
Sbjct: 225 QLIDIALCVGTDYNQGITNIGPKKALKLVKEHGSIEKILASTGNE---IPD---LGNIKD 278
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V D + W P + ++ L E+ F+ +RV+KA+EK++ + Q L
Sbjct: 279 FFMNPPVTKD---YGLNWKKPKTDSVLELLCDEHDFSRERVSKALEKLEVSSG-GGQKTL 334
Query: 291 ESFF 294
+++F
Sbjct: 335 DNWF 338
>gi|16082069|ref|NP_394495.1| flap endonuclease-1 [Thermoplasma acidophilum DSM 1728]
gi|28380022|sp|Q9HJD4.1|FEN_THEAC RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10640350|emb|CAC12164.1| DNA repair protein RAD2 related protein [Thermoplasma acidophilum]
Length = 336
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 169/301 (56%), Gaps = 21/301 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI LLE ++P+YVFDG+P LK + +++R + A +L
Sbjct: 47 LMDSHGNVTSHLYGIFYRTINLLENRIRPVYVFDGKPSPLKNRTISERQMMKEKAKAELE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +ED+ ++ R +T Q DD K+LL MG+P V+APSE EAQ + + K V
Sbjct: 107 EAIERG-EEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKK-NV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME-----FEVAKILEEL----NLTMDQF 172
V S+D D L FGA + LR+ RK+P + IL+E+ + DQ
Sbjct: 165 DGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQL 224
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + IL G D+ + I+GIG + AL LI++ G I+++L++I + + E + F
Sbjct: 225 IGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKHIGKNIENLDEIIDF------F 278
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
K P VV K+ PD + + +FL E+ F+ +R+ +E ++ S+Q RL+S
Sbjct: 279 KNPPVV----DYDFKFRKPDTDAIEHFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDS 334
Query: 293 F 293
F
Sbjct: 335 F 335
>gi|325959793|ref|YP_004291259.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
gi|325331225|gb|ADZ10287.1| Flap structure-specific endonuclease [Methanobacterium sp. AL-21]
Length = 328
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 169/293 (57%), Gaps = 11/293 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E +TSH G+ RT L+E G+KPIY+FDG LKK KR + ++
Sbjct: 47 LMDENKNITSHFSGILYRTSSLIEKGIKPIYIFDGVSDALKKDTQDKRREVKEESQKKWD 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A+E GN E+ K++ R+ ++++ + K+LL+++GVP ++A E EAQ + + ++G
Sbjct: 107 KALEEGNLEEARKYAVRSSRMSRDIIEGSKKLLEILGVPYIQALGEGEAQASYMVENGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D D + FGA R +R+L + K + + K+LE + +T +Q +D+ IL G
Sbjct: 167 WCVGSQDYDCILFGATRMVRNLT-ITGGKANLELITLKKVLENMEITREQLVDIAILVGT 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ ++G+G +T LKLI++HG I ++E + Y++ D R +F E VV D
Sbjct: 226 DFNRGVKGVGAKTGLKLIKKHGDIFNVIE---KNDYEMDVDPTI--LRNMFLEHNVVKDY 280
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
E +KW++PD+E + FL ++ F+ RV A++K NK Q LE +F
Sbjct: 281 E---LKWNSPDKEAAVEFLCDQHDFSEQRVLSALDKFAKLDNK--QKSLEDWF 328
>gi|193084394|gb|ACF10047.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-21-C11]
Length = 341
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 174/304 (57%), Gaps = 19/304 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VTSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + +AT
Sbjct: 47 LTDNRGRVTSHLTGLLYRNVNFLSIGIKPVYVFDGKPPSLKTAEIQRRKLGKKEATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +G+ E K++++T + +D K L L G+P ++A ++ EA A + K+G+
Sbjct: 107 KAKASGDFESARKYAQQTTSMQDTMVEDSKHFLDLFGIPYIQAKADGEATAAHMNKTGKA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV---------AKILEELNLTMDQF 172
YAVAS+D DS+ FGA + +R+ + RKIP + K L+ L +T +Q
Sbjct: 167 YAVASQDYDSILFGATKLVRNFTNSGRRKIPNRNTYIDVEPEMISHQKSLDALGITGEQI 226
Query: 173 IDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ IL G D+ D IG +TALK+I+++G +E I I E QI Y++ R++
Sbjct: 227 IDIGILVGTDFNPDGFERIGPKTALKMIKEYGKLEDI-PKIQEELKQI----DYKQIRKI 281
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F +P++ + +I++ D G++++L +E F+ +RV ++ ++K + K S L+
Sbjct: 282 FLQPDMPDID---KIEFKDTDYSGIVDYLANERSFSEERVKASLNRLKKSIEKRSH-TLD 337
Query: 292 SFFK 295
+FK
Sbjct: 338 QWFK 341
>gi|327401884|ref|YP_004342723.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
gi|327317392|gb|AEA48008.1| Flap structure-specific endonuclease [Archaeoglobus veneficus SNP6]
Length = 338
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 106/302 (35%), Positives = 168/302 (55%), Gaps = 20/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R ++E GM+PI+VFDG+PP K++E+ +R +RA+A +
Sbjct: 47 LKDSQGRMTSHLSGILYRVSNMIEVGMRPIFVFDGEPPVFKQKEIEERKERRAEAEEKWI 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E G K + ++ +V + + K+LL+ MGVP V+APSE EAQ A + G V
Sbjct: 107 AAIERGEKYAKKY-AQAAARVDEYIVESSKKLLEYMGVPWVQAPSEGEAQAAYMAAKGDV 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
S+D DSL FG+P+ R+L RK+P ++ L L +T +Q
Sbjct: 166 DFTGSQDYDSLLFGSPKLARNLAITGKRKLPGKNVYVEVKPEIIDLNGNLRRLGITREQL 225
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
+D+ +L G DY + ++G+G + A K I+ +G + L+ + E+ I +E R F
Sbjct: 226 VDIALLVGTDYNEGVKGVGVKKAYKYIKTYGDVFKALKALKVEQENI------EEIRNFF 279
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V + + + PD+E +I FL E+ F+ DRV KA+EK+KA ++SQ LE
Sbjct: 280 LNPPVTNN---YSLHFGKPDDEKIIEFLCEEHDFSKDRVEKAVEKLKAGM-QASQSTLER 335
Query: 293 FF 294
+F
Sbjct: 336 WF 337
>gi|282165429|ref|YP_003357814.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
gi|282157743|dbj|BAI62831.1| flap structure-specific endonuclease [Methanocella paludicola
SANAE]
Length = 339
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 20/303 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ GEVTSHL G+ R L+E G+KP++V+DG+PP LK + + R R +A +
Sbjct: 47 LVDDKGEVTSHLSGIIYRVTNLVEQGIKPVFVYDGKPPVLKAETIKARREVR-EAARQMY 105
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA A + K+++ + + Q D K LL MG+P + APSE EAQ A + + G
Sbjct: 106 EAARAAGSAEAYKYAQASTSINAQIIKDSKELLGYMGMPFLIAPSEGEAQAAYMVQKGAA 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP---------VMEFEVAKILEELNLTMDQF 172
V S+D DSL FGAPR +R++ RKIP E+ ++LE L +T +Q
Sbjct: 166 DFVGSQDYDSLLFGAPRMVRNVTITGRRKIPRRGVYVDVKPQIVELKEVLETLEVTREQL 225
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ IL G D+ I +G +TALKL+++H + IL+ + ++ YQE R F
Sbjct: 226 IDMGILVGTDFNPGIYKVGPKTALKLVKKHPDMRAILDELGQDIEN------YQEIREFF 279
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLE 291
P D IKW P+ E + +FL E+ F+ +RV K IE++ +A Q L
Sbjct: 280 LHPPTTDD---YSIKWGRPEPEKIRHFLCDEHNFSPERVDKVIERLDRAVSETGKQKTLS 336
Query: 292 SFF 294
++F
Sbjct: 337 AWF 339
>gi|193084162|gb|ACF09827.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-207-H3]
Length = 341
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 104/305 (34%), Positives = 179/305 (58%), Gaps = 23/305 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VTSHL G+ R I L G+KP+YVFDG+PP LK E+ +R + +AT
Sbjct: 47 LTDSRGMVTSHLTGLLHRNINFLSMGIKPVYVFDGRPPSLKTAEIQRRKLGKIEATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +G+ E K++++T + + +D K LL L G+P ++A ++ EA A + K+G+
Sbjct: 107 KAKASGDFESARKYAQQTTSMQETMVEDSKHLLDLFGIPYIQAKADGEATAAHMNKTGKA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
YAVAS+D DS+ FGA + +R+ + RK+P ++ ++ K L+ L +T +
Sbjct: 167 YAVASQDYDSILFGATKLVRNFTNSGRRKLPNRNTYIDIEPEIINYQ--KSLDALGITGE 224
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G D+ D IG +TALK+I++HG LE+I + + Q+ E Y++ R
Sbjct: 225 QIIDIGILVGTDFNPDGFERIGPKTALKMIKEHGK----LEDIPKIQEQL-EQIDYKQIR 279
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
++F +P++ + +I++ D G++++L +E F+ +RV ++ ++K K S
Sbjct: 280 KIFLQPDM---PDIGKIEFKDTDYSGVVDYLANERSFSQERVQTSLNRLKKNLEKRSH-T 335
Query: 290 LESFF 294
L+ +F
Sbjct: 336 LDQWF 340
>gi|298675706|ref|YP_003727456.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
gi|298288694|gb|ADI74660.1| flap structure-specific endonuclease [Methanohalobium evestigatum
Z-7303]
Length = 338
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 164/302 (54%), Gaps = 19/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G TSHL G+ R L+E +KP++VFDG+PPD K L KR R +A
Sbjct: 47 LQDSKGRTTSHLSGILYRITNLVEEDIKPVFVFDGKPPDFKTDTLEKRKQSRENANQKWN 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA E G E+ K+++ + ++ Q DD K LL+ MG+P +++PSE EAQ A + + G
Sbjct: 107 EAKEKGLTEEAYKYAQGSARIDDQILDDAKYLLESMGIPYLQSPSEGEAQAAHMVQKGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
V S+D D+L FGAP +R+L RK+P ++ + L+ + +T +
Sbjct: 167 DYVGSQDYDALLFGAPHVIRNLTITGKRKLPGKNTYIDLKPETIDMEENLKSMGITRSKL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ + G DY + IG + ALKL++ H SI++I++ + + + + F
Sbjct: 227 IDIALCVGTDYNKGLEKIGPKRALKLVKTHDSIKSIIDETGQNIENV------DKVKDFF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
PEV D +KW+ P+++ +I FL E+ F+ +RV KA +++ +K S Q L+
Sbjct: 281 MNPEVTDD---YHLKWNRPNKDKIIQFLCEEHDFSEERVAKACDRLD-SKLGSQQKTLDQ 336
Query: 293 FF 294
+F
Sbjct: 337 WF 338
>gi|84489880|ref|YP_448112.1| flap endonuclease-1 [Methanosphaera stadtmanae DSM 3091]
gi|121717163|sp|Q2NFD4.1|FEN_METST RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|84373199|gb|ABC57469.1| flap structure-specific endonuclease [Methanosphaera stadtmanae DSM
3091]
Length = 328
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 164/288 (56%), Gaps = 11/288 (3%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
G +TSHL G+ +T L+E +KP+YVFDG+ PDLKK+ +R + + ++ EA E
Sbjct: 52 GHITSHLNGIMFQTSTLIEKDIKPVYVFDGKAPDLKKETQEERINIKKESEKKYLEAKEV 111
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
G+ K++ RT + K+ K+LL LMG+P V+A +E EAQ + + +AV S
Sbjct: 112 GDVVAARKYAARTTHLNKEIIKSSKKLLDLMGIPYVQARTEGEAQASYMVSQNDAWAVVS 171
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
+D D L FGA R +R+L S + + K L+ELNLT +Q +D+ +L G D+
Sbjct: 172 QDYDCLQFGATRMIRNLKLSKSNSKNLELISLEKTLKELNLTREQLVDVAMLVGTDFNKG 231
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
+ GIG + +KLI ++G++E LE++N E ++ + R +F P VV I
Sbjct: 232 VYGIGAKKGIKLIHKYGTLEKALESLN-ETMEVDAEL----IREIFLNPNVV---HNYTI 283
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
++ P + L++FL E+ F+ R AI+K++A K++Q LE +F
Sbjct: 284 EFKRPKKSQLLDFLCGEHDFDERRTISAIKKLQA---KTAQSSLEDWF 328
>gi|374636521|ref|ZP_09708087.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
gi|373558724|gb|EHP85052.1| flap structure-specific endonuclease [Methanotorris formicicus
Mc-S-70]
Length = 326
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/295 (37%), Positives = 179/295 (60%), Gaps = 19/295 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N+ GE+TS G+F +TI +LE + P++VFDG+PP LK++ +R R A ++
Sbjct: 47 LRNKKGEITSTYNGIFYKTIYMLENDVTPVWVFDGKPPKLKEKTREERRKMREKAKEEFI 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A E N E+++K++KR +TK ++ K+LL LMG+P V AP+E E Q + + K G V
Sbjct: 107 KAKEIENIEEMQKYAKRMNFLTKDIVENSKKLLDLMGIPYVNAPAEGEGQASYMAKKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ V S+D D+L +GAPR +R+L ++ K + E+ ++L EL ++ D ID+ IL G
Sbjct: 167 FCVVSQDYDALLYGAPRVVRNL---TATKEELELIELKEVLNELGISHDDLIDMAILIGT 223
Query: 182 DYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
DY ++GIG + AL++ + N+E Y + Y+E + +FK P+ VTD
Sbjct: 224 DYNPKGVKGIGPKKALEIAKSK----------NKELY-LKAIENYEEIKNIFKNPK-VTD 271
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
E +++K PD++ +I FLV EN F+ DRV +EK+ K + K+ Q L+++F
Sbjct: 272 EYNIKLK--KPDKDSIIKFLVEENDFSLDRVQPHVEKLCKLIEKKTKQVTLDAWF 324
>gi|118596598|dbj|BAF37958.1| flap endonuclease-1 [Thermoplasma sp. S02]
Length = 336
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 166/301 (55%), Gaps = 21/301 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI LLE ++P+YVFDG+P LK + +++R + A +L
Sbjct: 47 LMDSHGNVTSHLYGIFYRTINLLENRIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +ED+ ++ R +T Q DD K+LL MG+P V+APSE EAQ + + K V
Sbjct: 107 EAIERG-EEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYVDAPSEGEAQASYMTKK-NV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME-----FEVAKILEEL----NLTMDQF 172
V S+D D L FGA + LR+ RK+P + IL+E+ + DQ
Sbjct: 165 DGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQL 224
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + IL G D+ + I+GIG + AL LI++ G I+++L+ I + + E F
Sbjct: 225 IGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKSVLKRIGKNIENL------DEVIDFF 278
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
K P VV K+ PD + + FL E+ F+ +R+ +E ++ S+Q RL+S
Sbjct: 279 KNPPVV----DYDFKFRKPDTDAIERFLCDEHDFSRERIRDHLESLRKNDQASTQFRLDS 334
Query: 293 F 293
F
Sbjct: 335 F 335
>gi|116754923|ref|YP_844041.1| flap endonuclease-1 [Methanosaeta thermophila PT]
gi|121693591|sp|A0B9M7.1|FEN_METTP RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|116666374|gb|ABK15401.1| flap endonuclease 1 [Methanosaeta thermophila PT]
Length = 336
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 21/302 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G VTSHL G+ R L+E G++ +VFDG PP+LK LA R + A L
Sbjct: 47 LMDASGRVTSHLSGLLYRMTNLIEVGIRVAFVFDGTPPELKAGTLAARAQMKEAAEIQLQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G D ++++ T ++ + D RLL MG+P V+APSE EAQ A + G V
Sbjct: 107 EAIATG--VDSFRYAQATARINSEILHDSIRLLDAMGIPYVQAPSEGEAQAAFMAIRGDV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-----AKILEE----LNLTMDQF 172
VAS+D DSL FGAPR +R+L RK+P + ILEE L ++ +Q
Sbjct: 165 DYVASQDYDSLLFGAPRVVRNLAITGRRKMPRKNIYIDVPPEVIILEEELTRLGISREQL 224
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
ID+ I+ G DY + +G + ALKLIR+HG +E +L+ + ++E R LF
Sbjct: 225 IDIGIMCGTDYNRGLPKVGPKRALKLIREHGCLEAVLDALGESIEN------FREIRELF 278
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P VT+ +L+++ DE ++ FL +E F+ DRV KA E++ A+ +S Q LE
Sbjct: 279 LHP-AVTESYELRMRKPMVDE--IVGFLCNERNFSEDRVRKAAERLNASY-RSGQSTLER 334
Query: 293 FF 294
+
Sbjct: 335 WL 336
>gi|170291015|ref|YP_001737831.1| flap endonuclease-1 [Candidatus Korarchaeum cryptofilum OPF8]
gi|226700953|sp|B1L6R9.1|FEN_KORCO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|170175095|gb|ACB08148.1| XPG I domain protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 342
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 168/303 (55%), Gaps = 18/303 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L GE+TS G+F RT L+ G+ PIYVFDG+ P K + + +R R +A
Sbjct: 48 LMTSKGEITSVHSGIFYRTANFLKEGIIPIYVFDGEKPSFKSRAIEERVRAREEAELKWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G+ E+ K+++ + +T +DCK +LKLMGVP+V+APSE EAQ A + G V
Sbjct: 108 EALEIGDLEEARKYAQAALNITGDIVEDCKTILKLMGVPIVQAPSEGEAQAAHMAMKGDV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+A AS+D DSL FGAPR +R+L RK+P E E+ +L+ ++ +Q
Sbjct: 168 WATASQDYDSLLFGAPRLIRNLTITGKRKLPGKEVYVDINPELIELESVLKRNGISREQL 227
Query: 173 IDLCILSGCDY-CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
I + IL G DY ++GIG + AL+L++++ E + + E + + Y+
Sbjct: 228 IMIGILVGTDYNLGGVKGIGVKRALELVKKYKRPEDLFSKVPWE-FDVDPISIYE----F 282
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F P TD+ +K DE L+ F+V E+ F+ +RV K I +I+ + S G LE
Sbjct: 283 FLNPP-TTDDYDTSLKRPMSDE--LLKFMVEEHEFSEERVKKVINEIEESYRMLSGGGLE 339
Query: 292 SFF 294
S+F
Sbjct: 340 SWF 342
>gi|312137188|ref|YP_004004525.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
gi|311224907|gb|ADP77763.1| flap endonuclease 1 [Methanothermus fervidus DSM 2088]
Length = 327
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 174/293 (59%), Gaps = 12/293 (4%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT L+E +KP+YVFDG+ LK + +++R R +A
Sbjct: 47 LMDRKGRVTSHLVGILHRTSALVENNIKPVYVFDGKSLALKSETISERTRMRLEAEKRWK 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++ + E K++ R +++K+ + K LL MG+P ++AP+E EAQ L K+G
Sbjct: 107 EALKKKDLEKARKYASRASRISKEIIESSKELLDAMGIPYIQAPNEGEAQAVYLVKNGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+AVAS+D D L FGAPR +R+L S + ++E + KIL++L ++ +Q ID+ +L G
Sbjct: 167 WAVASQDYDCLLFGAPRVIRNLAISSDINLELLELD--KILKKLGISREQLIDIALLVGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ ++GIG + L+LI++ G I T+++ +N E D+ + R +F +P+V
Sbjct: 225 DFNPGVKGIGAKRGLELIKKFGDIYTVIKRMNLE-----VDFDPEVLRNIFLKPKVKKKY 279
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
+ + + PD+E +I FL E+ F+ +RV +K+K K +Q RLE +F
Sbjct: 280 KIVWKR---PDKEKMIKFLCDEHDFSKERVLNVFKKLK--KVDFTQRRLEEWF 327
>gi|118596596|dbj|BAF37957.1| flap endonuclease-1 [Thermoplasma sp. S01]
Length = 336
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 167/301 (55%), Gaps = 21/301 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI LLE ++P+YVFDG+P LK + +++R + A +L
Sbjct: 47 LMDSHGNVTSHLYGIFYRTINLLENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +ED+ ++ R +T Q +D K+LL MG+P V+APSE EAQ + + + V
Sbjct: 107 EAIERG-EEDLRQYYSRINYITPQIVNDTKKLLDYMGIPYVDAPSEGEAQASYMTRK-NV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME-----FEVAKILEEL----NLTMDQF 172
V S+D D L FGA + LR+ RK+P + IL+E+ + DQ
Sbjct: 165 DGVISQDYDCLLFGARKVLRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQL 224
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + IL G D+ + I+GIG + AL LI++ G I+ +L I ++ + E + F
Sbjct: 225 IGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKAVLRRIGKDIENLDEIIDF------F 278
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
K P VV ++ PD + + +FL E+ F+ +R+ +E +K S+Q RL+S
Sbjct: 279 KNPPVV----DYDFRFGKPDTDAIEHFLCDEHDFSRERIRDHLESLKKNNQASTQFRLDS 334
Query: 293 F 293
F
Sbjct: 335 F 335
>gi|296108985|ref|YP_003615934.1| flap structure-specific endonuclease [methanocaldococcus infernus
ME]
gi|295433799|gb|ADG12970.1| flap structure-specific endonuclease [Methanocaldococcus infernus
ME]
Length = 323
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 179/298 (60%), Gaps = 25/298 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTN+ G +TS G+F +TI LLE + PI+VFDG+PP LK++ KR ++ A + L
Sbjct: 47 LTNKRGGITSAYNGIFYKTIMLLENDIIPIWVFDGEPPKLKEKTREKRREEKKKAEEKLR 106
Query: 62 EAVEAGNKEDIEK--FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
E +++IE+ + KR V K ++CK LL LMG+P V+APSE EAQ + + K G
Sbjct: 107 EV-----QDEIERARYFKRLSYVNKDMIENCKYLLSLMGIPYVQAPSEGEAQASYMAKKG 161
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
V+AV S+D DSL +GAPR +R+L ++ K + E+ ++LE L +++D ID+ I+
Sbjct: 162 DVWAVVSQDYDSLLYGAPRVVRNL---TTTKDELELIELNEVLENLRISLDDLIDIAIMM 218
Query: 180 GCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
G DY I GIG + A +++R + + + + + Y+E + +FK P V
Sbjct: 219 GTDYNPKGIEGIGFKRAYEMVRARVAKDILKKEVKN----------YEEIKNIFKNPR-V 267
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFFK 295
TD+ L ++ PD+EGLI FLV E+ FN +RV K ++K+ +K+ Q L+S+FK
Sbjct: 268 TDDYSLNLR--LPDKEGLIKFLVEEHDFNYERVKKHVDKLYNLIVSKTKQRTLDSWFK 323
>gi|126179869|ref|YP_001047834.1| flap endonuclease-1 [Methanoculleus marisnigri JR1]
gi|166973702|sp|A3CWV2.1|FEN_METMJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|125862663|gb|ABN57852.1| flap endonuclease 1 [Methanoculleus marisnigri JR1]
Length = 333
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N AG +TSHL G+ RT+ LE G++P++VFDG+PP+ K++ + +R RA A +
Sbjct: 48 LMNGAGRITSHLSGILFRTVNFLEKGIRPVFVFDGKPPEFKQETINERREHRARADEAWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+ G+ E+ K + + ++ + LL L+G+P V+APSE EAQ A + + G+V
Sbjct: 108 TALREGDMEEAYKQASASARIDSHTIASSRELLDLLGIPWVQAPSEGEAQAAYMARQGKV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-------AKILEELNLTMDQFID 174
S+D DSL FG+P +R+L RK V + L+ L +T +Q +
Sbjct: 168 TYAVSQDYDSLLFGSPVLVRNLTVSGRRKTRGRTITVNPERIVLSSFLDRLGVTREQLVK 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ IRG+GG+TALK++R +G E+++ + P R F
Sbjct: 228 IGILVGTDFNPGIRGVGGKTALKIVR-NGEFESVIAEKQPDFNPAP-------IRDFFLN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V D ++W PD EG++ L F+ +RV A+ K+ K++Q L+++F
Sbjct: 280 PPVTDD---YTLEWRTPDVEGVVEMLCGRYDFSEERVRSALAKVSV---KATQKTLDAWF 333
>gi|435850378|ref|YP_007311964.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661008|gb|AGB48434.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 338
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 157/286 (54%), Gaps = 18/286 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R L+E G+KP++VFDG+P LK + + KR + R AT
Sbjct: 47 LKDSRGNITSHLSGILYRMTSLMEEGIKPVFVFDGKPSHLKARTIEKRTADREKATIKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA G E+ +++ + +VT + +D ++LL MG+P V+APSE E+Q A + K G
Sbjct: 107 EAKSKGLAEEAYMYAQASSRVTHEIVEDSRKLLVAMGIPWVDAPSEGESQAAHMVKRGDA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
VAS+D DSL FGA +R+L RK+P E+ + L EL + Q
Sbjct: 167 NYVASQDYDSLLFGASFVVRNLTITGKRKLPKKNIFVDVKPEIMELGENLAELEIDQSQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I++ + G DY + IG + ALKLI++H SIE +L+ + Q ED QE + LF
Sbjct: 227 IEIALCVGTDYNRGLEKIGPKKALKLIKEHRSIEKVLQAVG----QNIED--LQEIKDLF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278
P V + +KW PD + ++ FL + F+ +RV KA E++
Sbjct: 281 LNPSVT---DNYTLKWKKPDTDAIVEFLCQGHDFSKERVIKACERL 323
>gi|257077017|ref|ZP_05571378.1| flap endonuclease-1 [Ferroplasma acidarmanus fer1]
Length = 339
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 167/302 (55%), Gaps = 18/302 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +E G +TSHL G+F RT LLE +KP+Y FDG+P LK + L +R + + +L
Sbjct: 47 LKDEHGNITSHLSGIFYRTATLLENNIKPVYSFDGKPYRLKDETLKERKAIKEKNIAELN 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A+E + E I+ S R +T + K+LL +MGVP V+APSE EAQ + + K G V
Sbjct: 107 LAMENKDAEKIKTLSSRINYITADIVSESKKLLDMMGVPWVQAPSEGEAQASYMSKVGAV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME---------FEVAKILEELNLTMDQF 172
+V S+D D L GA R LR+ R+I ++ + L+ L +T DQ
Sbjct: 167 DSVISQDYDCLLLGARRVLRNFTMYGRRRISGTGKFINITPEIIDLKENLDNLGITQDQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + IL G D+ IRGIG +T L LI+++G IE++L+ N+ + E + F
Sbjct: 227 IGIGILVGTDFNPGIRGIGAKTGLSLIKKYGDIESVLKQKNKTIDNL------DEIKEFF 280
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
P V E+ ++K++ P E +I +L +E+ F+ +R+ +++I+ + ++Q L+
Sbjct: 281 LNPPV---EDTGELKFAPPYREKIIEYLCAEHSFSENRINSILDRIEKNYSGANQSSLDK 337
Query: 293 FF 294
+F
Sbjct: 338 YF 339
>gi|374628642|ref|ZP_09701027.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
gi|373906755|gb|EHQ34859.1| flap endonuclease 1 [Methanoplanus limicola DSM 2279]
Length = 333
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 165/300 (55%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F R +E G+ P+++FDG+PP+ K + +++R + + A L
Sbjct: 48 LMDSEGRVTSHLSGLFFRLTNFIEKGVSPVFIFDGKPPEFKNRTISERRAAKEQAEAGLK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA++AG+ + +++ + +V ++ D KRLL LMG+P ++APSE EAQ A + G V
Sbjct: 108 EALKAGDNQAAFSYARSSTRVDREIIDSSKRLLSLMGIPYLDAPSEGEAQAAFMVSEGIV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-------KILEELNLTMDQFID 174
S+D DSL FGA + +R+L RKI V ++L L +T +Q ++
Sbjct: 168 DYSVSQDYDSLLFGAEKLVRNLTVSRKRKIRGRTITVNPETISLDEVLSGLEITREQLVE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ IRGIG + ALK++R G+ E IL +PE + Y + F
Sbjct: 228 IGILIGTDFNSGIRGIGPKKALKIVRD-GTFENILSE------SMPE-FDYLPVKDFFLN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V +E + + A D G+ FL E+GF+ +R+ +EKI A + Q L+ +F
Sbjct: 280 PPV---KENVIPDYGAVDGAGVTEFLCVEHGFSKERINTVLEKINAG---AGQKTLDQWF 333
>gi|193084327|gb|ACF09984.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote SAT1000-49-D2]
Length = 341
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 178/306 (58%), Gaps = 25/306 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VTSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + +AT
Sbjct: 47 LTDNRGRVTSHLTGLLHRNVNFLSIGIKPVYVFDGKPPSLKTAEIQRRKLGKKEATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +G+ E K++++T + +D K LL L G+P ++A ++ EA A + K+G+
Sbjct: 107 KAKASGDFESARKYAQQTTSMQDTMVEDSKHLLDLFGIPYIQANADGEATAAHMNKTGKA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
YAVAS+D DS+ FGA + +R+ + RK+P ++ ++ K L+ L +T +
Sbjct: 167 YAVASQDYDSILFGAKKLVRNFTNSGRRKLPNRNTYVDIEPEIISYQ--KSLDALGITGE 224
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G D+ D IG +TALK+I+++G LE+I + + Q+ E Y++ R
Sbjct: 225 QIIDIGILIGTDFNPDGFDRIGPKTALKMIKEYGK----LEDIPKIQEQL-EQIDYEQIR 279
Query: 230 RLFKEPEVVTDEEQL-QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQG 288
++F + TD + +I++ D G++++L +E F+ +RV ++ ++K + K S
Sbjct: 280 KIFLQ----TDMPDIGKIEFKDTDYSGIVDYLANERSFSQERVQASLNRLKRSLEKRSH- 334
Query: 289 RLESFF 294
L+ +F
Sbjct: 335 TLDQWF 340
>gi|410669636|ref|YP_006922007.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
gi|409168764|gb|AFV22639.1| flap endonuclease-1 [Methanolobus psychrophilus R15]
Length = 341
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 173/299 (57%), Gaps = 15/299 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LT+ +G TSHL G+F+RT +L +A +KP+++FDG+PP++KK+ L KR + AT +
Sbjct: 46 LLTDSSGNPTSHLTGLFSRTSKLRDANIKPVFIFDGKPPEMKKETLEKRRGIKETATLNY 105
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E GN ED++KF++ T ++T Q D+ K+LL+LMG+P ++A SEAEAQ A + G
Sbjct: 106 EIAREEGNLEDMKKFAQGTSRITPQILDESKKLLELMGIPCLQAESEAEAQAAFMTSRGD 165
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI---------LEELNLTMDQ 171
V S+D D+ FGA +R+L RKIP VAK LE+L +T +Q
Sbjct: 166 ADLVGSQDYDAFLFGAESVVRNLGSTGKRKIPGRNAYVAKTPEHISLSGSLEQLEITREQ 225
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ I G D+ + I +G +TALKLI +H I T+++ N++ I +E R
Sbjct: 226 LIDVAICIGTDFNEGIHHVGAKTALKLILKHRDIITMIKEENKD---IRTCASVEEIREF 282
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P V D +KW P+ + L +FLV E F+ +V I+ ++ + + Q L
Sbjct: 283 FLNPPVTRD---YTLKWKKPEPDVLFDFLVRERDFSEKQVLGNIKILEGRASDNCQSCL 338
>gi|386001444|ref|YP_005919743.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
gi|357209500|gb|AET64120.1| FLAP endonuclease [Methanosaeta harundinacea 6Ac]
Length = 336
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 170/303 (56%), Gaps = 23/303 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G TSHL G+ R LLEAG K ++VFDG+PP K++ L +R R+ A +
Sbjct: 47 LRDGSGRTTSHLSGILYRMTNLLEAGAKVVFVFDGEPPRFKRETLDQRAETRSRAEEMWQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A E G D K+++ ++ + D RLL+ MG+P V+APSE EAQ A + G V
Sbjct: 107 RAKEEGL--DGFKYAQAASRLEDEMIADAMRLLEAMGIPAVQAPSEGEAQAAFMAIKGDV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-------VMEFEVAKILEE---LNLTMDQ 171
V S+D D+L FGAPR +R++ RK+P VM EV + EE L + Q
Sbjct: 165 DLVGSQDYDALLFGAPRVVRNMAITGKRKLPGKNVYVEVMP-EVISLDEELLRLGIARRQ 223
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+++ I+ G DY + ++ +G +TALKLI++HG++E +LE R + ED E R L
Sbjct: 224 LVEIGIMCGTDYNEGLKRVGPKTALKLIKEHGNLEGVLEA----RGETIED--AAEIRDL 277
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLE 291
F +P V D +I+ PD E ++ FL E F+ +RV KA++++ A K Q L+
Sbjct: 278 FLDPPVTED---YKIETKRPDPEKILAFLCDERDFSQERVEKAVKRLMEA-VKVGQSTLD 333
Query: 292 SFF 294
+F
Sbjct: 334 KWF 336
>gi|82617225|emb|CAI64131.1| DNA repair protein [uncultured archaeon]
gi|268322957|emb|CBH36545.1| flap structure-specific endonuclease [uncultured archaeon]
Length = 330
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 162/284 (57%), Gaps = 9/284 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G +TSHL G+ RT L+EAG+K ++VFDG+P +LK + R +R A
Sbjct: 47 LRDSSGRITSHLSGLIYRTTNLMEAGLKLVFVFDGKPSELKADVIKARSERREAAMQKWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA + ED K+++ + ++ D K LL LMG+P V+APSE EAQ A + ++G
Sbjct: 107 EA-KVLFPEDAFKYAQASARIDATIVADAKTLLTLMGIPYVQAPSEGEAQAAYMVQNGDA 165
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL-NLTMDQFIDLCILSG 180
V+S+D DSL FGAP +R+L P RK +E K LE+ + ++ ID+ IL G
Sbjct: 166 ELVSSQDYDSLLFGAPITIRNLSAP--RKKAKLELVELKALEDTQGIIREELIDIAILVG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + I+G+G + ALKLI++H SIE I+ + E+ Y+ R LF P+ VTD
Sbjct: 224 TDFNEGIKGVGVKRALKLIKKHHSIEKIISQAAIDTSAGIEN--YELVRELFLHPD-VTD 280
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
+L KW D + L + F+ +RV+KA+EKI K K
Sbjct: 281 SYEL--KWGTLDAGKIKELLCEVHDFSEERVSKALEKILIPKMK 322
>gi|48477300|ref|YP_023006.1| flap endonuclease-1 [Picrophilus torridus DSM 9790]
gi|73919351|sp|Q6L2I9.1|FEN_PICTO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|48429948|gb|AAT42813.1| RAD-2/FEN-1 exonuclease [Picrophilus torridus DSM 9790]
Length = 338
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 23/304 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RT LLE +KP+YVFDG+P LK + L +R + L
Sbjct: 47 LKDSNGNITSHLSGIFYRTSNLLENNIKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ + + I S R +T ++ K LL LMG+P V+APSE EAQ + + G V
Sbjct: 107 EAIASNDDAKIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQASYMTLKGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHL-------MDPSSRKIPVME--FEVAKILEELNLTMDQF 172
AV S+D D L FGA R LR+ + +SR I V ++ + L L ++ +Q
Sbjct: 167 NAVVSQDYDCLLFGAKRILRNFTVYGRRRIAGTSRTINVNPEIIDLNENLSNLGISREQL 226
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI--LENINRERYQIPEDWPYQEARR 230
I + IL+G D+ ++GIG +TAL LI+++ I ++ ++NI + E
Sbjct: 227 IYIGILTGTDFNPGVKGIGAKTALSLIKKYNDIYSVIKIKNIGIDN--------LDEIIE 278
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P +IK++ PD +G+I+FL ++ F+ RV + +EKI K Q L
Sbjct: 279 FFMNPP----HNDYEIKFNEPDFDGIIDFLCGKHNFSESRVNETLEKISRNYKKDHQSSL 334
Query: 291 ESFF 294
+ FF
Sbjct: 335 DRFF 338
>gi|72160212|gb|AAZ66769.1| flap endonuclease FEN-1a [Zea mays]
Length = 90
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/90 (87%), Positives = 88/90 (97%)
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
DSLTFGAPRFLRHLMDPSS+KIPVMEF+VAK+LEEL LTMDQFIDLCIL GCDYCDSI+G
Sbjct: 1 DSLTFGAPRFLRHLMDPSSKKIPVMEFDVAKVLEELELTMDQFIDLCILCGCDYCDSIKG 60
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQI 219
IGGQTALKLIRQHGSIE+ILEN+N++RY+I
Sbjct: 61 IGGQTALKLIRQHGSIESILENLNKDRYRI 90
>gi|13541391|ref|NP_111079.1| flap endonuclease-1 [Thermoplasma volcanium GSS1]
gi|28380020|sp|Q97B98.1|FEN_THEVO RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|14324774|dbj|BAB59701.1| FLAP endonuclease-1 [Thermoplasma volcanium GSS1]
Length = 335
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 166/304 (54%), Gaps = 27/304 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + +G VTSHL G+F RT+ L+E G+KPI+VFDG+P LK + L R + A +L
Sbjct: 47 LMDSSGNVTSHLYGIFYRTVNLVENGIKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G +E+++++ R +T Q +D K LL MG+P V+APSE EAQ + + +
Sbjct: 107 EAISRG-EENLKQYYSRINYITPQIVNDTKELLTYMGIPYVDAPSEGEAQASYMTRK-DA 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP------------VMEFEVAKILEELNLTM 169
V S+D D L FGA + LR+ RK+P VM + ++L++ +
Sbjct: 165 DGVISQDYDCLLFGAKKILRNFAIYGRRKVPRKNVYRTVYPEYVM---LDEVLKKNGINQ 221
Query: 170 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
DQ I++ IL G D+ + I+GIG + AL LI++ G+I+ +L I + + E +
Sbjct: 222 DQLIEIGILVGTDFNEGIKGIGAKKALALIKKEGNIKAVLNKIGKNIENLDEIIDF---- 277
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
FK P VV ++ + PD + + FL + F+ DR+ + I NKS Q R
Sbjct: 278 --FKNPPVV----DVKYVFGKPDPKKIEEFLCVVHDFSRDRILEHINTYVKYYNKSVQFR 331
Query: 290 LESF 293
L+SF
Sbjct: 332 LDSF 335
>gi|47212193|emb|CAF90074.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 114/159 (71%), Gaps = 3/159 (1%)
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
+K+P+ EF ++IL+E+ LT +QFIDLCIL GCDYC +I+GIG + A+ LI+QHG IE I
Sbjct: 200 KKLPIQEFHFSRILQEIGLTNEQFIDLCILLGCDYCGTIKGIGPKRAIDLIKQHGCIEEI 259
Query: 209 LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 268
LENI+ ++ PEDW Y+EAR LF PEVV D +++KWS PDE+GLI F+ +E F+
Sbjct: 260 LENIDSNKHPSPEDWLYKEARGLFLNPEVV-DCSTVELKWSQPDEDGLIQFMCNEKQFSE 318
Query: 269 DRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
DR+ +KI ++ S+QGRL+SFF + S+ KRK
Sbjct: 319 DRIRNGCKKIVKSRQGSTQGRLDSFFTVTGSLSS--KRK 355
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 36/45 (80%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQE 45
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK E
Sbjct: 52 VLQNEDGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSSE 96
>gi|193083976|gb|ACF09651.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote AD1000-56-E4]
gi|193084049|gb|ACF09722.1| XPG I flap structure-specific endonuclease [uncultured marine
crenarchaeote KM3-86-C1]
Length = 341
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 172/306 (56%), Gaps = 23/306 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VTSHL G+ R + L G+KP+YVFDG+PP LK E+ +R + +AT
Sbjct: 47 LTDSKGRVTSHLTGLLYRNVNFLSMGIKPVYVFDGKPPSLKTAEIERRKLGKKEATIKYE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A +G+ E K++++T + +D K L L G+P V+A ++ EA A + K+G
Sbjct: 107 KAKASGDLESARKYAQQTTSMQDTMVEDSKHFLDLFGIPYVQAKADGEATAAYMNKNGMA 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
AVAS+D DS+ FGA + +R+ + RK+P ++ ++ K L+ L +T +
Sbjct: 167 DAVASQDFDSILFGAVKLIRNFTNSGRRKLPNRNTYIDIEPEIISYQ--KSLDALGITGE 224
Query: 171 QFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEAR 229
Q ID+ IL G D+ D IG +TALK+I+++G +E I I E Q+ Y++ R
Sbjct: 225 QIIDIGILIGTDFNPDGFERIGPKTALKMIKEYGKLEDI-PKIQEELEQV----DYKQIR 279
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
++F + + +I++ D G++++L +E F+ +RV ++ ++K + K S
Sbjct: 280 KIFLQADT---PNVGKIEFKDTDYSGIVDYLSNERDFSEERVKASLNRLKKSIEKRSH-T 335
Query: 290 LESFFK 295
L+ +FK
Sbjct: 336 LDQWFK 341
>gi|118596628|dbj|BAF37974.1| flap endonuclease-1 [Thermoplasma sp. P61]
Length = 328
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 162/297 (54%), Gaps = 25/297 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F RTI LLE ++P+YVFDG+P LK + +++R + A +L
Sbjct: 47 LMDSHGNVTSHLYGIFYRTINLLENKIRPVYVFDGKPSPLKNRTISERQLMKEKAKVELE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+E G +ED+ ++ R +T Q DD K+LL MG+P ++APSE EAQ + + K V
Sbjct: 107 EAIERG-EEDLRQYYSRINYITPQIVDDTKKLLDYMGIPYIDAPSEGEAQASYMTKK-NV 164
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME-----FEVAKILEEL----NLTMDQF 172
V S+D D L FGA + LR+ RK+P + IL+E+ + DQ
Sbjct: 165 DGVISQDYDCLLFGARKILRNFAIYGRRKVPRKNIYKTVYPEYIILDEVLSANQINQDQL 224
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + IL G D+ + I+GIG + AL LI++ G I+ +L I + + E + F
Sbjct: 225 IGIGILVGTDFNEGIKGIGAKKALALIKKEGDIKAVLRRIGKNIENLDEIIDF------F 278
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
K P VV K+ PD + + +FL E+ F+ +R+ +E ++ K+ Q R
Sbjct: 279 KNPPVV----DYDFKFRKPDTDAIEHFLCDEHDFSRERIRDHLESLR----KNDQAR 327
>gi|56756631|gb|AAW26488.1| SJCHGC07325 protein [Schistosoma japonicum]
Length = 188
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 6/158 (3%)
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENI 212
+ EF +A +LE L+LTMDQF+DLCIL GCDY D+IRGIG + AL L+ ++ SI+ +L+NI
Sbjct: 3 IQEFNLASVLEGLSLTMDQFVDLCILLGCDYVDTIRGIGPKKALDLLHKYHSIDCVLKNI 62
Query: 213 NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVT 272
++ +Y +P DWPY++A++LF PE VTD +++KW PDEEGL+ FL ++GFN +R+
Sbjct: 63 DKSKYPVPNDWPYEDAKKLFLNPE-VTDPSLIELKWDEPDEEGLVEFLCHKHGFNEERIR 121
Query: 273 KAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRKVYL 310
+K+ AKN ++QGR+++FF TS P K + +
Sbjct: 122 NGAKKLFKAKNTTTQGRIDNFF-----TSIPSKNNLLI 154
>gi|154151645|ref|YP_001405263.1| flap endonuclease-1 [Methanoregula boonei 6A8]
gi|166973700|sp|A7IA59.1|FEN_METB6 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|154000197|gb|ABS56620.1| XPG I [Methanoregula boonei 6A8]
Length = 333
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ R + LE G+KP++VFDG+PP+LK++ A+R R +A +
Sbjct: 48 LMDAKGRVTSHLSGILFRMVNFLEKGIKPVFVFDGKPPELKQETNAERKKLRDEAGEKYK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G++E+ + ++ +V + K LL L+G+P V+APSE EAQ A + + G
Sbjct: 108 EAVERGDEEEAYRQARSATRVDETIIATSKELLDLLGIPYVQAPSEGEAQAAFMVQRGDA 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-------AKILEELNLTMDQFID 174
S+D D+L FGAP +R+L RKI V +++L L+LT +Q ++
Sbjct: 168 RFAVSQDYDTLLFGAPLLMRNLTVSGKRKIRGRAVTVNPERLVLSEVLSGLSLTREQLVE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ G+G +TALK+++ G + + E + P P A F +
Sbjct: 228 VGILVGTDFNPGAAGVGAKTALKIVKSGGFAQKLAE-------KCPGFDPAPVA-DFFLK 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V T+ E + W P EG+ L F +RV A+E+ A K+ Q LESFF
Sbjct: 280 PPVTTEYE---LAWGHPCVEGIKKMLCDGYDFAPERVDAALERYSA---KAGQKTLESFF 333
>gi|424811751|ref|ZP_18236997.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
gi|339757159|gb|EGQ40741.1| flap structure-specific endonuclease [Candidatus Nanosalinarum sp.
J07AB56]
Length = 340
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 162/303 (53%), Gaps = 30/303 (9%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+F RT +LL++ ++P+YVFDG+ PDLK E A+R KR +A +
Sbjct: 47 LKDSDGNITSHLSGLFYRTTKLLDSNIRPVYVFDGEMPDLKATEAAQRREKREEAQKEWE 106
Query: 62 EAVEAGNKEDIEKFSK--RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
+ E G+ + E FSK ++ +VT D+ + LL MGVP V+APSE EAQ A + +G
Sbjct: 107 KLKEEGDVD--EAFSKAMQSSRVTGDMIDESRELLDAMGVPYVDAPSEGEAQAARMAANG 164
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNLTMDQ 171
VY V S+D DSL FGA R +++L D SSR I + +L+ L L+ +
Sbjct: 165 NVYGVGSQDWDSLLFGAERMVKNLTSRKKRSNRDGSSRTISTELIRLEHVLDNLGLSRRE 224
Query: 172 FIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW-----PY 225
+ + +L G D+ D I G+G +TALKL+R++ S+E +L + DW PY
Sbjct: 225 LVWMGMLVGTDFNPDGIYGVGPKTALKLVRRNQSLEEVLS-------EDKVDWDSENDPY 277
Query: 226 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKS 285
+ K P + + D + + ++ +GF+ R+ +E++ A
Sbjct: 278 RIEDFFMKPP-----TNDANFSFGSVDADLVEEIMIETHGFSKKRIQSGLERLSNALEAR 332
Query: 286 SQG 288
+G
Sbjct: 333 QKG 335
>gi|374723540|gb|EHR75620.1| flap endonuclease-1 [uncultured marine group II euryarchaeote]
Length = 342
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 18/286 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L E G+V SHL G RT LL AG+KP+YVFDG P+LK E+A+R ++R +A
Sbjct: 51 LRAENGKVVSHLMGFLNRTTTLLAAGIKPVYVFDGTAPELKADEIAQRRARRVEAERIHK 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ AG+ +K ++R + + + + K+LL L+GVP V+A +E E Q A + GQ+
Sbjct: 111 EALAAGDFPLAQKMAQRIMHYSPEMVAETKQLLDLLGVPWVDAKAEGEGQAAVMAAKGQL 170
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSS----RKIPVMEFEVAKILEELNLTMDQFIDLCI 177
VA++D D+L +G P +R+LM S R + + + ++L E LT Q IDL I
Sbjct: 171 DVVATQDWDALLYGTPLLVRNLMSHGSKQHGRVVQAQKIILDEVLSENELTRAQLIDLAI 230
Query: 178 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP-- 235
+ G D+ IRGIG +T +KLI+ HG+IE I E ++ +PE E R +F +
Sbjct: 231 MIGTDFHPGIRGIGPKTGMKLIKAHGTIEAICEAKEKD---VPER--LDEIRAIFHDHPA 285
Query: 236 -EVV-TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
EV D E Q+ D +GLI FL E F+ R+ A +K++
Sbjct: 286 NEVADADLEPGQV-----DTKGLIQFLQVERQFSQRRMDNAFDKLR 326
>gi|307352874|ref|YP_003893925.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
gi|307156107|gb|ADN35487.1| flap structure-specific endonuclease [Methanoplanus petrolearius
DSM 11571]
Length = 333
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 157/300 (52%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+F R LE +KP+++FDG PP+ K + L +R ++A A
Sbjct: 48 LMDREGRVTSHLSGIFFRITTFLENNIKPVFIFDGAPPEFKSETLEQRRERKAVAETAYR 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+AVE G+ + ++ +V + K LL MG+P ++A SE EAQ A + +G V
Sbjct: 108 QAVEVGDTVSAFRHARAATRVDETIIAGTKELLGYMGIPCIDAMSEGEAQAAYMAMNGDV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM-------EFEVAKILEELNLTMDQFID 174
S+D DSL FGAPR +R+L RK+ E ++ +L+ +T ++ I+
Sbjct: 168 RYSISQDYDSLLFGAPRLVRNLTVSRKRKVRGRVITVNPEEILLSDLLDGKGITREELIE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ ++G+G +TALK+++ ET EN PE P + F
Sbjct: 228 IGILVGTDFNSGVKGVGAKTALKIVKSGKFYETFEEN-------EPEFDP-APVKEFFLN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V + + WS D EG++++L + F+ DRV +E+I KS Q L+S+F
Sbjct: 280 PPV---SKGYSLSWSHVDREGVVSYLCGRHDFSEDRVNSVLERIGV---KSGQKTLDSWF 333
>gi|330509049|ref|YP_004385477.1| FLAP endonuclease [Methanosaeta concilii GP6]
gi|328929857|gb|AEB69659.1| FLAP endonuclease [Methanosaeta concilii GP6]
Length = 339
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 168/304 (55%), Gaps = 25/304 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ RT L+EAG+K +VFDG+ P K LA+R R A
Sbjct: 50 LMDRQGRVTSHLSGLLYRTTNLIEAGVKVAFVFDGEAPTFKAVTLAERSEIRDKAAWAWE 109
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA AG ED K+++ ++ + +D +RL+ MG+PV++APSE EAQ A + G V
Sbjct: 110 EARAAG--EDGFKYAQAASRINSEIIEDGRRLILAMGLPVIQAPSEGEAQAAYMAARGDV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-----------VMEFEVAKILEELNLTMD 170
S+D DSL FGAP +R+L RK+P V+ EV L L +T
Sbjct: 168 DYAGSQDYDSLLFGAPLVVRNLAITGKRKLPRKNIYVDVEPEVINLEVG--LANLGITHK 225
Query: 171 QFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARR 230
Q +++ I+ G D+ + +G +TALKLIR+ G +E+IL + R ED +++ R
Sbjct: 226 QLVEIGIMCGTDFNSGLERVGPKTALKLIREKGDLESILAD----RDDKIED--FEKIRE 279
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRL 290
F P VTD+ ++ +K P+E +++FLV E F+ +RV K ++++ +S Q L
Sbjct: 280 FFLHPP-VTDDYKIALKKPVPEE--IVSFLVDERDFDPERVEKTAKRLEEV-YRSGQSTL 335
Query: 291 ESFF 294
+ +F
Sbjct: 336 DHWF 339
>gi|359417810|ref|ZP_09209878.1| flap endonuclease-1, partial [Candidatus Haloredivivus sp. G17]
gi|358031834|gb|EHK00670.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 296
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 171/300 (57%), Gaps = 16/300 (5%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G++TSHL G+F R I LLE ++P+YVFDG PDLK++E +R KR +A +
Sbjct: 4 LKDSDGDITSHLSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKETTERRKKREEAKKEWE 63
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ E G + + ++ K+T ++ K LL MG+P ++A SE EAQ A + G V
Sbjct: 64 KLKEEGKISEAYSKATQSSKLTGDMIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDV 123
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRK--------IPVMEFEVAKILEELNLTMDQFI 173
YAV S+D D + FGA R +R+L +RK + E+ K+LEEL+L+ +Q +
Sbjct: 124 YAVGSQDWDCMLFGADRMVRNLTSRKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLV 183
Query: 174 DLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
L ++ G D+ D I GIG + L++++ H S+E+++E+ E+++ D + F
Sbjct: 184 MLGMVMGTDFNDGIHGIGPKKGLEMVKDHESLESLMED---EKFEWGSDNSPEAVYDFFI 240
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESF 293
P V E++ + +PD + + + LV ++ F+ DR++ ++ ++ A +S Q L SF
Sbjct: 241 NPPV----EKVDFSFESPDNDRISDILVDQHDFSEDRISSKLKDLEKAL-ESRQSGLGSF 295
>gi|355570852|ref|ZP_09042122.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
gi|354826134|gb|EHF10350.1| Flap structure-specific endonuclease [Methanolinea tarda NOBI-1]
Length = 333
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 166/300 (55%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L ++ G VTSHL G+ RT +LE G++ ++++DG PP K+ +A+R + R A +
Sbjct: 48 LMDQRGRVTSHLSGILFRTANMLEKGIRTVWIYDGTPPSFKQDTVAERRAVREKAGEKWK 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EA+ G+ E+ + ++ + ++ ++ ++L+ L+G+P ++APSE EAQ A + G
Sbjct: 108 EALLRGDTEEAYRQARSSSRIDEEIIATSRQLITLLGLPWIQAPSEGEAQAAYMVMRGDA 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI-----PVM--EFEVAKILEELNLTMDQFID 174
V S+D D+L FGAP +R+L RK+ +M ++ +L L ++ + I
Sbjct: 168 RYVVSQDYDTLLFGAPVLVRNLTVSGKRKVRGRTLAIMPERIVLSSVLTGLEISREDLIR 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ +L G D+ IRG+G +TAL+++R +G E ++ RER Q DW +E F +
Sbjct: 228 VGLLVGTDFNPGIRGVGAKTALRMVR-NGEFEQVM----RER-QPGVDW--EEIFHFFAK 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V E+ + W PD EG++ L F+ +RV A+ +K A S Q L+S+F
Sbjct: 280 PPVT---EEYSLHWRPPDREGILRMLCDGFDFSPERVENALGGVKTA---SGQKTLDSWF 333
>gi|221222286|gb|ACM09804.1| Flap endonuclease 1-A [Salmo salar]
Length = 192
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/118 (66%), Positives = 95/118 (80%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L NE GE TSHL GMF RTIR+LE G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNENGETTSHLMGMFYRTIRMLEHGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
A+A EAG +E+I+KFSKR VKVT+QHND+CK+LL LMGVP +EAP EAEA CAAL K+
Sbjct: 112 AQAQEAGEQENIDKFSKRLVKVTQQHNDECKKLLTLMGVPYIEAPCEAEASCAALVKA 169
>gi|269986761|gb|EEZ93040.1| XPG I domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 332
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 20/294 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G+VT+HL G+F R++ +LE +KP++VFDG P KK+ L +R + +A + +
Sbjct: 47 LTDSKGKVTTHLNGLFYRSVSMLENRIKPVFVFDGAAPKFKKETLKEREKTKEEAIEKMQ 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A A E+ + +R ++ D K LL +G+P V+AP+E EAQ A L G+V
Sbjct: 107 NASTA---EEKAMYMRRLSRIDDYIIDSSKELLSYLGIPYVQAPAEGEAQAAQLNMQGKV 163
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI---------LEELNLTMDQF 172
+A AS+D D+L FGA + +R+L + RKI + + L L +T +Q
Sbjct: 164 FAAASQDYDTLLFGAKKVVRNLNITNKRKISGKGITTSVLPELINANPNLARLGITREQL 223
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I L + G DY + GIG + ALK++++ E R Y I E + Y F
Sbjct: 224 ITLSLFVGTDYNKGVDGIGPKKALKIVKEKSREEIFASYDFRSDYSIKEIYDY------F 277
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
P+++ E L K ++E L++FL E+ F+ +RV + +++IK +N S
Sbjct: 278 ISPKIIEVNEDLNPK--KLNKEKLVSFLCEEHDFSKERVNQYLDRIKLEENSLS 329
>gi|88603762|ref|YP_503940.1| flap endonuclease-1 [Methanospirillum hungatei JF-1]
gi|121721338|sp|Q2FNC9.1|FEN_METHJ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|88189224|gb|ABD42221.1| flap endonuclease 1 [Methanospirillum hungatei JF-1]
Length = 333
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L +++G +TSHL G+F RT L G++P+++FDG+ P++K + + +R R ++ +
Sbjct: 48 LMDDSGRITSHLSGIFFRTANFLTQGIRPVFIFDGKSPEMKGRTIQERRDVREESKEKWD 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A + G+ +++ + + ++L++LMG+PVV+APSE EAQ A + G
Sbjct: 108 QAKKEGDLAGAFRYAMSSTAIDAYILSSARQLIQLMGLPVVDAPSEGEAQGAYMVLKGDA 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-------AKILEELNLTMDQFID 174
V S+D D+L FG P +R+L R++ + V + +L L++T +Q I+
Sbjct: 168 DYVVSQDYDTLLFGTPVLVRNLTISGKRRLHGRQITVQPERIVLSDVLSTLDITREQLIE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL+G D+ IRGIG +T LK I+ G ++I+ R ++P D+ + R F
Sbjct: 228 IAILTGTDFNPGIRGIGAKTGLKKIKS-GEFDSII------REKLP-DFDPEPVRSFFLN 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P VTD L D +G+ FL E+GF+ DRV ++KI K Q LES+F
Sbjct: 280 PP-VTDSYTLDP--GRIDRDGIRAFLCGEHGFSQDRVDPVLDKI---SKKEKQKTLESWF 333
>gi|451927433|gb|AGF85311.1| endonuclease of the XPG family [Moumouvirus goulette]
Length = 431
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 29/304 (9%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+TN GE+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ DA +
Sbjct: 54 MTNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDLRRSKK-DAAEKKL 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----K 117
E ++ E+ K K+T +K+ + + LL LMG+P + AP EA+ C+ L +
Sbjct: 113 EVLDDSEDEEYIKNFKQTFTPSKRDIIEAQILLDLMGIPYIIAPGEADVVCSWLAARRDE 172
Query: 118 SGQVY--AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
+G+ Y V S+D D L GAP + ++ S+ V + K L + LTM QF DL
Sbjct: 173 NGKRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDL 232
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--- 221
C+L GCDYCD+I+G+G +TA I++ GS+E ++ ++++R + + +
Sbjct: 233 CVLLGCDYCDNIKGVGPKTAYTKIKECGSLEEVINMVHKKREGDSDSDDEQTFNLTDNDK 292
Query: 222 ------DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
++ Y +L K + + +EQL+++ +E L++F+ ++ F+ R+ A+
Sbjct: 293 CMIEARNYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFMCVKHDFDVIRIQTAL 350
Query: 276 EKIK 279
+++K
Sbjct: 351 DRLK 354
>gi|435851449|ref|YP_007313035.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433662079|gb|AGB49505.1| flap structure-specific endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 341
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 158/282 (56%), Gaps = 15/282 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+LT+ +G TSHL G+F+RT +L +A +KPI++FDG+PP +K++ L KR + A +
Sbjct: 46 LLTDASGNPTSHLTGLFSRTCKLRDANIKPIFIFDGKPPQMKERTLEKRKECKQLAARNY 105
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G+ E ++KF++ T +T + K+LL+LMG+P ++A SEAEAQ A + G
Sbjct: 106 EIAREGGDLEGMKKFAQGTSCITPHILKESKKLLELMGIPWMQAESEAEAQAAFMTLRGD 165
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM---------EFEVAKILEELNLTMDQ 171
V S+D D+ FGA +R+L RK+P +A L +LN+T +Q
Sbjct: 166 ADLVGSQDYDAFLFGAKNVVRNLGSTGKRKLPGKAAYVPKNPEHISLANSLGQLNITREQ 225
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
ID+ I G D+ + I +G +TALKLI +H I T+L E+ +I +E R
Sbjct: 226 LIDVAICIGTDFNEGIHRVGPKTALKLILRHRDINTLLR---EEKKEINTCVSVEEIRDF 282
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK 273
F P V TD ++W P + L FLV ++ F+ ++ K
Sbjct: 283 FMNPPVTTD---YTLRWKKPRSDELFEFLVKKHSFSEKQIIK 321
>gi|290559766|gb|EFD93090.1| XPG I domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 332
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 161/287 (56%), Gaps = 20/287 (6%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LT+ G VT+HL G+F R I +LE G+ P++VFDG+ P KK+ L +R S + +A
Sbjct: 47 LTDSKGRVTTHLNGIFYRCISMLENGINPVFVFDGKAPRFKKETLKERESIKEEAR---I 103
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A A +E+ + +R ++ K LL MGV V+AP+E EAQ A + G V
Sbjct: 104 KAENAVTQEERAMYMRRLSRIDDYIVASSKELLDYMGVKYVQAPAEGEAQAAWMSGKGLV 163
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA---KILE------ELNLTMDQF 172
YA AS+D D++ FGA R +R+L + RKI V +I+E +L + ++
Sbjct: 164 YAAASQDYDTILFGAKRVIRNLNINNKRKISRKGITVQVNPEIIESDYNLKKLGVDREKM 223
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLF 232
I + + +G DY + GIG + AL L++++ S+E +LE+ Y D+ +E + F
Sbjct: 224 IVVALFTGTDYNKGVDGIGPRKALNLVKEN-SVEKLLES-----YDFRSDYDIKEVFQYF 277
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
P+ V E Q +K + +E L+ F+ E+GF+ +R++ ++++IK
Sbjct: 278 LTPDTV--EVQNDLKLGSMQKEKLVEFMCKEHGFSEERMSASLQRIK 322
>gi|124485183|ref|YP_001029799.1| flap endonuclease-1 [Methanocorpusculum labreanum Z]
gi|166973701|sp|A2SQC6.1|FEN_METLZ RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|124362724|gb|ABN06532.1| flap endonuclease 1 [Methanocorpusculum labreanum Z]
Length = 333
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 160/300 (53%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G +TSHL G+ R L+E + PIYVFDG+PP K L+KR R +A D
Sbjct: 48 LMDGQGRITSHLSGLLFRNANLIEKNITPIYVFDGKPPVFKASTLSKRREVRENAADAWE 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+A++ G++E K++ + K+ D K LL +G+ ++AP E EAQ + + K+G V
Sbjct: 108 KALKEGDEESARKYAMASSKIDAFIIDSSKELLSALGIAWIQAPEEGEAQSSFMTKNGDV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI--PVME-----FEVAKILEELNLTMDQFID 174
S+D DSL FGAP +R++ ++I V+ + ++L L++T ++ I
Sbjct: 168 TYAVSQDYDSLLFGAPDLVRNITVSGKKRIRGKVLSVYPERLRLEEVLTGLSVTQEELIQ 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ +L G DY + G+G +TA+K++R+ + I E+ N P+ + F +
Sbjct: 228 IALLIGTDYNSGVPGVGPKTAVKIVREGKFYDRIGESENAAE---PD-----QLIGYFMD 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V E I+ +PD + +I+ L E+GF +RV +E++ A K Q L+++F
Sbjct: 280 PPV---ERSYNIESRSPDPDRVIDLLCGEHGFTQERVEAGLERLGA---KKGQATLDAWF 333
>gi|432330136|ref|YP_007248279.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
gi|432136845|gb|AGB01772.1| flap structure-specific endonuclease [Methanoregula formicicum
SMSP]
Length = 333
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 153/300 (51%), Gaps = 21/300 (7%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G VTSHL G+ R + G+KP++VFDG+P LK+ + +R R A +
Sbjct: 48 LMDRQGRVTSHLSGILFRISNFMAKGIKPVFVFDGKPTQLKQATIEERRKLRDTAGEKWR 107
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
EAVE G++ + K ++ + +V + LL LMG+PVV+AP E EAQ A + G
Sbjct: 108 EAVERGDEAEAYKQARSSTRVDDTIIRTSRELLGLMGIPVVQAPGEGEAQAAFMVARGDC 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEV-------AKILEELNLTMDQFID 174
V S+D D+L FGAP +R+L RKI + V A+ L L LT +Q I+
Sbjct: 168 LYVISQDYDTLLFGAPTLVRNLTVSGKRKIRGRQITVNPERIVLAETLAGLKLTREQLIE 227
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKE 234
+ IL G D+ + G+G +T LK++ Q G L +E+ + P E +F +
Sbjct: 228 IGILVGTDFNPGVEGVGAKTGLKIV-QKGEFAAKL----KEKQPDFDPAPVME---MFLK 279
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294
P V T + + PD EG+ L F+ +RV KA+E K+ Q LES+F
Sbjct: 280 PPVTT---EYSVAAGHPDAEGIKKMLCDGYDFSEERVDKALEGFSV---KAGQKTLESWF 333
>gi|441432364|ref|YP_007354406.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
gi|440383444|gb|AGC01970.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
moumouvirus]
Length = 431
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 169/304 (55%), Gaps = 29/304 (9%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ N GE+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ A L
Sbjct: 54 MKNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDIRRSKKDAAEKKLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----K 117
+ ++ ++E I+ F K+T +K+ + + LL LMG+P + AP EA+ C+ L +
Sbjct: 114 DLDDSEDEEYIKNF-KQTFTPSKRDIQEAQILLDLMGIPYIVAPGEADVVCSWLAARRDE 172
Query: 118 SGQVY--AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
+G Y V S+D D L GAP + ++ S+ V + K L + LTM QF DL
Sbjct: 173 NGDRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDL 232
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--- 221
C+L GCDYCD+I+GIG +TA I++ GS+E +++ ++++R + + E
Sbjct: 233 CVLLGCDYCDNIKGIGPKTAYNKIKECGSLEEVIKMVHKKREGDSDSDNEQTFDLTENDK 292
Query: 222 ------DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
++ Y +L K + + +EQL+++ +E L++F+ ++ F+ R+ A+
Sbjct: 293 CMIEARNYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFMCVKHDFDVMRIQTAL 350
Query: 276 EKIK 279
+++K
Sbjct: 351 DRLK 354
>gi|294871168|ref|XP_002765850.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
gi|239866179|gb|EEQ98567.1| flap endonuclease-1, putative [Perkinsus marinus ATCC 50983]
Length = 297
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 154/291 (52%), Gaps = 33/291 (11%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL------AKRYSKRA 54
MLTN G TS + G RTI++LE G++PI+VFDG PP +K L A +Y K A
Sbjct: 1 MLTNSEGVCTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQATKYKKTA 60
Query: 55 DATDDLA-EAVEAGNKE-----DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 108
+ + + A EA ++ DI++ KR V LL ++ AP +A
Sbjct: 61 SSPAETSMPASEAPSRSVPMEIDIDRRLKRLVVHPP--------LLTHRASTLIAAP-QA 111
Query: 109 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD----PSSRKIP---VMEFEVAKI 161
EA C LCK G+ AV++ED+D++ FGAP L++L + S ++P V E +
Sbjct: 112 EATCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHHSRSMEVPNNYVREISRDVV 171
Query: 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-YQIP 220
L+ L+LT + +L IL GCDYC SI IG A L+ +HGSI +I+ I + Y+ P
Sbjct: 172 LDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITAIEGSKTYKAP 231
Query: 221 EDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV 271
W Y+EAR LF P + TDE + K + + L + LV +N RV
Sbjct: 232 SGWAYREARELFLNP-LTTDEIFPRSKMNV---DALADLLVHRLDYNPARV 278
>gi|448689147|ref|ZP_21694884.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
gi|445779017|gb|EMA29959.1| flap endonuclease-1 [Haloarcula japonica DSM 6131]
Length = 326
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 148/277 (53%), Gaps = 14/277 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T + GE ++L G+ + E M P++VFDG DLK E+ KR +R +L E
Sbjct: 50 TTDDGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQREKYESELEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+FE LE +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDFEAT--LERHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + I GIG +TA+K + +HG + T+LE N R LF +P VTD+
Sbjct: 225 DFNEGISGIGPKTAVKELHEHGDLYTVLEARNEHIDHA------DRIRNLFLDP-AVTDD 277
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278
++ PD + F+ + ++D V + E+I
Sbjct: 278 YEIPDSIE-PDLDAARAFVTDQWEVDADEVARGFERI 313
>gi|448825476|ref|YP_007418407.1| putative endonuclease of the xpg family [Megavirus lba]
gi|444236661|gb|AGD92431.1| putative endonuclease of the xpg family [Megavirus lba]
Length = 443
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 167/329 (50%), Gaps = 44/329 (13%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+TN+ GE+TSHL G+ + + L+ GM PI VFDG+ P++K + + R S++ A L
Sbjct: 53 MTNQKGELTSHLYGILYKMLTFLQNGMTPICVFDGKAPEIKNKTVDIRRSRKDAAEKKLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----- 116
++ ++E I+ F K+T +K+ + + LL LMG+P + +P EA+ C+ L
Sbjct: 113 SLEDSEDEEYIKNF-KQTFTPSKKDIQEAQILLDLMGIPYIVSPGEADVVCSWLASRVDP 171
Query: 117 ---------KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 167
K V V S+D D L GAP + ++ ++ V + L+ L
Sbjct: 172 NYIDPETGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTKNKDVTVISLRTTLKSTGL 231
Query: 168 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN---------------- 211
TM QF DLC+L GCDYCD+I+GIG +TA K+I+Q GS+E +++N
Sbjct: 232 TMRQFTDLCVLLGCDYCDNIKGIGPKTAYKMIKQFGSLENVIKNDHEKKDGSNDSGSDSD 291
Query: 212 -----------INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
IN + ++ L K + V ++QL+++ +E L++F+
Sbjct: 292 SDSDFNDIKLTINEKCMIEARNYFLNAVDNLDKSKDFVVTQDQLELRKYQYEE--LMDFM 349
Query: 261 VSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
++ F+ R+ A++++K +K + R
Sbjct: 350 CVKHDFDVIRIQTALDRLKMYHDKLNITR 378
>gi|289582877|ref|YP_003481343.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|448283660|ref|ZP_21474932.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
gi|289532430|gb|ADD06781.1| flap structure-specific endonuclease [Natrialba magadii ATCC 43099]
gi|445573260|gb|ELY27783.1| flap endonuclease-1 [Natrialba magadii ATCC 43099]
Length = 325
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 153/289 (52%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 49 TTADGTEVANLIGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRREQRQTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E L+ +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPYTLRQL---TSKGDPELMDLEAT--LDHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + I GIG +TAL I +HG + ++LE E Y + R LF+EP VTD
Sbjct: 224 DFNEGISGIGPKTALTEISEHGDLWSVLEARG-------ETLEYGDRVRALFREPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
E + + PD E ++ E G ++D V + E+I+ + ++ R
Sbjct: 276 EYEFETTLD-PDIEAAREYVTEEWGVDADEVARGFERIEESVTQTGLDR 323
>gi|363539876|ref|YP_004894560.1| mg509 gene product [Megavirus chiliensis]
gi|350611041|gb|AEQ32485.1| putative endonuclease of the xpg family [Megavirus chiliensis]
Length = 443
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 165/324 (50%), Gaps = 44/324 (13%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+TN+ GE+TSHL G+ + + L+ GM PI VFDG+ P++K + + R S++ A L
Sbjct: 53 MTNQKGELTSHLYGILYKMLTFLQNGMTPICVFDGKAPEIKNKTVDIRRSRKDAAEKKLE 112
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----- 116
++ ++E I+ F K+T +K+ + + LL LMG+P + +P EA+ C+ L
Sbjct: 113 SLEDSEDEEYIKNF-KQTFTPSKKDIQEAQILLDLMGIPYIVSPGEADVVCSWLASRVDP 171
Query: 117 ---------KSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 167
K V V S+D D L GAP + ++ ++ V + L+ L
Sbjct: 172 NYIDPETGKKKRYVTGVCSDDSDMLALGAPYLFKDMLKFMTKNKDVTVISLRTTLKSTGL 231
Query: 168 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN---------------- 211
TM QF DLC+L GCDYCD+I+GIG +TA K+I+Q GS+E +++N
Sbjct: 232 TMRQFTDLCVLLGCDYCDNIKGIGPKTAYKMIKQLGSLENVIKNDHEKKDGSNDSDSDSD 291
Query: 212 -----------INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
IN + ++ L K + V ++QL+++ +E L++F+
Sbjct: 292 SDSDFNDIKLTINEKCMIEARNYFLNAVDNLDKSKDFVVTQDQLELRKYQYEE--LMDFM 349
Query: 261 VSENGFNSDRVTKAIEKIKAAKNK 284
++ F+ R+ A++++K +K
Sbjct: 350 CVKHDFDVIRIQTALDRLKMYHDK 373
>gi|448358107|ref|ZP_21546792.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
gi|445646678|gb|ELY99662.1| flap endonuclease-1 [Natrialba chahannaoensis JCM 10990]
Length = 325
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 152/289 (52%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R L
Sbjct: 49 TTTDGTEVANLIGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRREQRQTYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L+ +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPYTLRQL---TSKGDPELMDLEAT--LDHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + I GIG +TAL I +HG + ++LE E Y + R LF+EP VTD
Sbjct: 224 DFNEGISGIGPKTALSAISEHGDLWSVLEARG-------ETLEYGDRVRALFREPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
E + + PD E ++ E G ++D V + E+I+ + ++ R
Sbjct: 276 EYEFETTLD-PDMEAAREYVTDEWGVDADEVARGFERIEESVTQTGLDR 323
>gi|294932999|ref|XP_002780547.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
gi|239890481|gb|EER12342.1| flap endonuclease 1, putative [Perkinsus marinus ATCC 50983]
Length = 427
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 155/301 (51%), Gaps = 43/301 (14%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL------AKRYSKRA 54
MLTN G TS + G RTI++LE G++PI+VFDG PP +K L A +Y K A
Sbjct: 52 MLTNSEGVCTSGVHGFLHRTIKMLELGIRPIFVFDGHPPAMKYDCLKERRVQAMKYKKTA 111
Query: 55 DATDDLA-EAVEAGNKE-----DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEA 108
+ + A EA ++ DI++ KR V LL ++ AP +A
Sbjct: 112 STPAETSMPASEAPSRSVSMEIDIDRRLKRLVVHPP--------LLTHRASTLIAAP-QA 162
Query: 109 EAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD------------PSSR--KIP-- 152
EA C LCK G+ AV++ED+D++ FGAP L++L + P SR ++P
Sbjct: 163 EATCVRLCKEGKADAVSTEDIDAVVFGAPIVLKNLSNTLHRLEQNSSSRPYSRSKEVPNN 222
Query: 153 -VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILEN 211
V E +L+ L+LT + +L IL GCDYC SI IG A L+ +HGSI +I+
Sbjct: 223 YVREISRDVVLDSLSLTAEGLAELAILCGCDYCPSIPKIGPTRAYGLLLKHGSITSIITA 282
Query: 212 INRER-YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 270
I + Y+ P W Y+EA+ LF P + TDE + K + + L + LV +N R
Sbjct: 283 IEGSKTYKAPSGWAYREAKELFLNP-LTTDEIFPRSKMNV---DALADLLVHRLDYNPAR 338
Query: 271 V 271
V
Sbjct: 339 V 339
>gi|448382773|ref|ZP_21562268.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
gi|445661242|gb|ELZ14033.1| flap endonuclease-1 [Haloterrigena thermotolerans DSM 11522]
Length = 325
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 149/287 (51%), Gaps = 12/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKDDEIESRREQRRSYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++A L+ +LT++Q ID IL G D
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPEL-MDLAATLKRHDLTLEQLIDAAILIGTD 224
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ D + GIG +TAL I +HG + T+LE R + D R+LF++P VTD+
Sbjct: 225 FNDGVSGIGPKTALSAIAEHGDLWTVLE--ARGDHVEHGD----RVRQLFRDPN-VTDDY 277
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD ++ E G + D V + E+I+ + ++ R
Sbjct: 278 EFETTLE-PDLAAAREYVTDEWGVDEDEVARGFERIEDSVTQTGLDR 323
>gi|335433586|ref|ZP_08558406.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
gi|334898592|gb|EGM36696.1| flap endonuclease-1 [Halorhabdus tiamatea SARL4B]
Length = 326
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 26/288 (9%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T GE ++L G+ + EA + P++VFDG DLK E+ +R +R +DL
Sbjct: 48 IYTTADGEEVANLVGVIQGLPKFFEADVTPVFVFDGAVTDLKDDEVKRRREQREQYEEDL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G+ + + RT ++T + ++LL L+ VP+V+AP+E EAQ A + + G
Sbjct: 108 EAAREEGDAIQVARLESRTQRLTDVIIETTRKLLGLLDVPIVDAPAEGEAQAAYMARRGD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V +ED D+L FGAP LR L SS +M+FE L E +L+ +Q +D+ +L G
Sbjct: 168 ADYVGTEDYDALLFGAPYTLRQLT--SSGDPELMDFEAT--LAEHDLSWEQLVDVALLCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSI-------ETILENINRERYQIPEDWPYQEARRLFK 233
D+ + +RG G +TA+K IR+HG + + +EN +R R LF
Sbjct: 224 TDFNEGVRGYGPKTAVKAIREHGDLWGVSEAEDVYVENADR-------------IRDLFL 270
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
+P VTDE L+ PD F+ + ++D V + E+I+++
Sbjct: 271 DP-AVTDEYSLETT-IEPDLAAARAFVTDQWEVDTDEVARGFERIESS 316
>gi|448309987|ref|ZP_21499840.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
gi|445589008|gb|ELY43247.1| flap endonuclease-1 [Natronorubrum bangense JCM 10635]
Length = 325
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 150/289 (51%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P DLK E+ R +R D L
Sbjct: 49 TTADGTEVANLIGIVQGLPKFFEHDITPVMVFDGGPSDLKADEIESRREQRESYEDQLEV 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDTVAIAQLESRTQRLTPTIQETSRELLELLDVPIVEAPAEGEAQAAHMARRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGNPELMDLEAT--LEHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ D + GIG +TA+ I +HG + ++LE + Y R+LF++P VTD
Sbjct: 224 DFNDGVHGIGPKTAISEITEHGDLWSVLEARGDSVEYG-------DRVRQLFRDPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + + PD E ++ E G ++ V + E+I+ + ++ R
Sbjct: 276 DYEFETTLD-PDLEAAKAYVTDEWGVDAGEVERGFERIEESVTQAGLDR 323
>gi|371944946|gb|AEX62767.1| putative endonuclease of the XPG family [Moumouvirus Monve]
Length = 343
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 158/285 (55%), Gaps = 29/285 (10%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ N GE+TSHL G+ + + L+ GM PI VFDG+ PD+K + + R SK+ A L
Sbjct: 54 MKNRKGELTSHLYGILYKMLVFLQNGMTPICVFDGKAPDIKNKTVDIRRSKKDAAEKKLE 113
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----K 117
+ ++ ++E I+ F K+T +K+ + + LL LMG+P + AP EA+ C+ L +
Sbjct: 114 DLDDSEDEEYIKNF-KQTFTPSKRDIQEAQILLDLMGIPYIVAPGEADVVCSWLAARRDE 172
Query: 118 SGQVY--AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
+G Y V S+D D L GAP + ++ S+ V + K L + LTM QF DL
Sbjct: 173 NGDRYVKGVCSDDSDMLALGAPYLFKDMLKFMSKNKEVTIISLNKTLTKTGLTMRQFTDL 232
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER-----------YQIPE--- 221
C+L GCDYCD+I+GIG +TA I+++GS+E +++ ++++R + + E
Sbjct: 233 CVLLGCDYCDNIKGIGPKTAYNKIKEYGSLEEVIKMVHKKREGDSDSDNEQTFDLTENDK 292
Query: 222 ------DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
++ Y +L K + + +EQL+++ +E L++F+
Sbjct: 293 CMIEARNYFYTALDKLDKSKDFILTDEQLELRKFQYEE--LMDFM 335
>gi|448713770|ref|ZP_21702055.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
gi|445789178|gb|EMA39869.1| flap endonuclease-1 [Halobiforma nitratireducens JCM 10879]
Length = 325
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 16/291 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 47 IYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRREQRRTYEEQL 106
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 107 ETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGD 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FGAP LR L +S+ P +M+ E LE+ +LT++Q ID IL
Sbjct: 167 ADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LEKHDLTLEQLIDAAILI 221
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVV 238
G D+ D + GIG +TA+K I +HG + ++LE + Y R+LF++P V
Sbjct: 222 GTDFNDGVSGIGPKTAIKAITEHGDLWSVLEARGDSVEYG-------DRVRQLFRDPN-V 273
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
TD+ + PD E ++ E + D V + E+I+ + ++ R
Sbjct: 274 TDDYEFDAT-PDPDLEAAREYVTDEWAVDPDEVARGFERIEESITQTGLDR 323
>gi|383622569|ref|ZP_09948975.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|448694526|ref|ZP_21697026.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
gi|445785111|gb|EMA35906.1| flap endonuclease-1 [Halobiforma lacisalsi AJ5]
Length = 325
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 154/291 (52%), Gaps = 16/291 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 47 IYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKADEIESRREQRRSYEEQL 106
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + RT ++T + + LL+L VP+VEAP+E EAQ A + + G
Sbjct: 107 ETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLFDVPIVEAPAEGEAQAAHMVRHGD 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FGAP LR L +S+ P +M+ E LEE +LT++Q ID IL
Sbjct: 167 ADYVGSEDYDALLFGAPLTLRQL---TSKGNPELMDLEAT--LEEHDLTLEQLIDAAILI 221
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVV 238
G D+ + + GIG +TA+ I +HG + ++LE R E Y + R+LF++P V
Sbjct: 222 GTDFNEGVSGIGPKTAITEITEHGDLWSVLEA----RGDTVE---YGDRVRQLFRDPN-V 273
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
TD+ + + PD E ++ E G + D V + E+I+ + ++ R
Sbjct: 274 TDDYEFETTLD-PDLEAAREYVTDEWGVDRDEVARGFERIEESVTQTGLDR 323
>gi|433637770|ref|YP_007283530.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
gi|433289574|gb|AGB15397.1| flap structure-specific endonuclease [Halovivax ruber XH-70]
Length = 326
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 14/290 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L GM + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 48 IYTTADGTEVANLVGMVQGLPKFFEHDIVPVMVFDGGPSELKTDEIESRREQRESYEEQL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + T ++T + + LL+L+ VPVVEAP+E EAQ A + ++G
Sbjct: 108 EVAREEGDQVAIAQLESYTQRLTPTIQETSRELLRLLDVPVVEAPAEGEAQAANIVRNGD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L FG+PR LR L +S+ P + ++ L++ +LT++Q ID+ I+ G
Sbjct: 168 ADYVGSEDYDALLFGSPRTLRQL---TSKGDPEL-MDLQATLDDHDLTLEQLIDVAIMIG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILEN-INRERYQIPEDWPYQEARRLFKEPEVVT 239
D+ D + GIG +TAL LI +HG + + LE+ + Y R+LF++P VT
Sbjct: 224 TDFNDGVDGIGPKTALSLIHEHGDLWSALESRGDHVEYG-------DRVRQLFRDPN-VT 275
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + PD +++ E ++D V + E+I+ + +S R
Sbjct: 276 DDYEFTTDLD-PDVAAARDYVCEEWAVDADEVARGFERIEESLVQSGLDR 324
>gi|257053576|ref|YP_003131409.1| flap endonuclease-1 [Halorhabdus utahensis DSM 12940]
gi|256692339|gb|ACV12676.1| XPG I domain protein [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 151/285 (52%), Gaps = 20/285 (7%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + EA + P++VFDG DLK E+ +R +R D L
Sbjct: 48 IYTTADGTEVANLVGVVQGLPKFFEADVTPVFVFDGAVTDLKDDEVQRRREQREQYEDQL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG+ + + RT ++T + + LL L+ VP V+AP+E EAQ A + + G
Sbjct: 108 EDAREAGDAVRVARLESRTQRLTDVILETTRELLALLDVPTVDAPAEGEAQAAHMARRGD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V V +ED D+L FGAP LR L SS +M+FE L E +L+ +Q +D+ +L G
Sbjct: 168 VDYVGTEDYDALLFGAPFTLRQLT--SSGDPELMDFEAT--LAEHDLSWEQLVDVALLCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA---RRLFKEPEV 237
D+ D +RG G +TA+K +R+HG + + EN ED + A R LF +P V
Sbjct: 224 TDFNDGVRGYGPKTAVKAVREHGDLWGVSEN---------EDVYVENADRIRELFLDPAV 274
Query: 238 VTDEEQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
E+ I+ S PD F+ + +++ V + E+I+++
Sbjct: 275 T---EEYTIETSIDPDLAAAREFVTDQWAVDAEEVARGFERIESS 316
>gi|448299433|ref|ZP_21489445.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
gi|445588023|gb|ELY42272.1| flap endonuclease-1 [Natronorubrum tibetense GA33]
Length = 325
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 150/289 (51%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 49 TTSDGTEVANLIGIVQGLPKFFEHDIVPVMVFDGGPSELKDDEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDQVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+PR LR L +S+ P +M+ E L+ LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPRTLRQL---TSKGDPELMDLEAT--LDHHELTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + + GIG +TA+K I +HG + ++LE Y R+LF++P VTD
Sbjct: 224 DFNEGVSGIGPKTAIKAITEHGDLWSVLEARGAHIEYG-------DRVRKLFRDPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + + PD E ++ E ++D V + E+I+ ++ R
Sbjct: 276 DYEFETTLD-PDLEAAKEYVCEEWAVDADEVARGFERIEEGVTQTGLDR 323
>gi|433592003|ref|YP_007281499.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|448334339|ref|ZP_21523517.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
gi|433306783|gb|AGB32595.1| flap structure-specific endonuclease [Natrinema pellirubrum DSM
15624]
gi|445620225|gb|ELY73731.1| flap endonuclease-1 [Natrinema pellirubrum DSM 15624]
Length = 325
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 152/290 (52%), Gaps = 18/290 (6%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKDDEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKHGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++A L+ +LT++Q ID IL G D
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPEL-MDLAATLKRHDLTLEQLIDAAILIGTD 224
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD-- 240
+ D + GIG +TAL I +HG + ++LE R + D R+LF++P+V D
Sbjct: 225 FNDGVSGIGPKTALSAIAEHGDLWSVLE--ARGDHVEHGD----RVRQLFRDPDVTDDYG 278
Query: 241 -EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ +++ PD E ++ E G ++ V + E+I+ + ++ R
Sbjct: 279 FDPEIE-----PDLEAAREYVTGEWGIDAGEVERGFERIEESVTQTGLDR 323
>gi|336255103|ref|YP_004598210.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
gi|335339092|gb|AEH38331.1| Flap structure-specific endonuclease [Halopiger xanaduensis SH-6]
Length = 325
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 16/291 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 47 VYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRRDQRRTYEEQL 106
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 107 ETAREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHIVRRGD 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FGAP LR L +S+ P +M+ E L +LT++Q ID IL
Sbjct: 167 ADYVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LAHHDLTLEQLIDAAILI 221
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVV 238
G D+ + + GIG +TA+K I +HG + ++LE + Y + R+LF++P V
Sbjct: 222 GTDFNEGVSGIGPKTAIKEITEHGDLWSVLEARG-------DSIEYGDRVRQLFRDPN-V 273
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
TDE + PD E ++ E G D V + E+IK + ++ R
Sbjct: 274 TDEYEFDTAMD-PDLEAAREYVTDEWGVAPDEVERGFERIKESVTQTGLDR 323
>gi|448344743|ref|ZP_21533645.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
gi|445636849|gb|ELY90006.1| flap endonuclease-1 [Natrinema altunense JCM 12890]
Length = 325
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 151/289 (52%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P DLK E+ R +R + L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSDLKDDEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRDLLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E L + +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LAQHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + + GIG +TA+ I +HG + + LE R + D R+LF++P+V D
Sbjct: 224 DFNEGVSGIGPKTAISAITEHGDLWSALE--ARGDHVEHGD----RVRQLFRDPDVTDDY 277
Query: 242 E-QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
E + I PD EG ++ E G ++ V + E+I+ + ++ R
Sbjct: 278 EFESTID---PDLEGAKTYVTDEWGVDAGEVERGFERIEESVTQTGLDR 323
>gi|344211083|ref|YP_004795403.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
gi|343782438|gb|AEM56415.1| flap endonuclease-1 [Haloarcula hispanica ATCC 33960]
Length = 326
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 148/278 (53%), Gaps = 16/278 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTSDGEEVANLIGVIQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+FE LE+ +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDFEAT--LEQHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + I GIG +TA+ + +HG + +LE R+ + D R LF +PEV D
Sbjct: 225 DFNEGISGIGPKTAVTELHEHGDLYAVLE--ARDEHIDHAD----RIRNLFLDPEVTDDY 278
Query: 242 EQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
E I S PD + F+ + ++D V + E+I
Sbjct: 279 E---IPDSIEPDVDAARAFVTDKWEVDADEVARGFERI 313
>gi|435846409|ref|YP_007308659.1| flap endonuclease 1 [Natronococcus occultus SP4]
gi|433672677|gb|AGB36869.1| flap endonuclease 1 [Natronococcus occultus SP4]
Length = 325
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ R E + P+ VFDG P LK E+ R +R + L
Sbjct: 49 TTGDGTEVANLIGIVQGVARFFEHDVTPVMVFDGGPSQLKADEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VPVVEAP+E EAQ A + K G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLELLDVPVVEAPAEGEAQAAHIVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LERHELTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + + GIG +TA+ I +HG + ++LE R E Y + R+LF++P+ VTD
Sbjct: 224 DFNEGVSGIGPKTAISEITEHGDLWSVLEA----RGDTVE---YGDRVRQLFRDPD-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E ++ E G +D V ++ E+I+ ++ R
Sbjct: 276 DYSFETSLE-PDLEDARAYVTDEWGVAADEVERSFERIEEHATQTGLDR 323
>gi|448321569|ref|ZP_21511045.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
gi|445603121|gb|ELY57089.1| flap endonuclease-1 [Natronococcus amylolyticus DSM 10524]
Length = 325
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 152/289 (52%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ R E + P+ VFDG P LK+ E+ R +R + L
Sbjct: 49 TTADGTEVANLIGIVQGISRFFEHDVTPVMVFDGGPSQLKEDEIESRREQRRTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VPVVEAP+E EAQ A + K G
Sbjct: 109 AREEGDQVAIAQLESRTQRLTPTIQETSRELLELLDVPVVEAPAEGEAQAAHVVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LERHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + + GIG +TA+ I +HG + ++LE R E Y + R+LF++P VTD
Sbjct: 224 DFNEGVSGIGPKTAISEITEHGDLWSVLEA----RGDTVE---YGDRVRQLFRDPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E ++ E G +D V ++ E+I+ ++ R
Sbjct: 276 DYAFETT-IEPDLEAARAYVTDEWGVAADEVERSFERIEEQATQTGLDR 323
>gi|448738796|ref|ZP_21720817.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
gi|445801182|gb|EMA51526.1| flap endonuclease-1 [Halococcus thailandensis JCM 13552]
Length = 325
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 19/292 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AGE ++L G+ + E + P+ VFDG DLK E+ +R ++ A
Sbjct: 48 IYTTAAGEEVANLVGVVQGLPKFFEHDITPVMVFDGGVTDLKTDEIEQRREQKEKAAKRA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG+ + + RT ++T ++ + LL L+ VP+VEAP+E EAQ A + ++G
Sbjct: 108 KEAREAGDAVEAARLESRTQRLTDTIHETTRELLALLDVPIVEAPAEGEAQAAHMARTGT 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L FGAPR LR L + ++ L+E +LT +Q +D+ IL G
Sbjct: 168 VDYAGSEDYDTLLFGAPRTLRDLTSKGDPECMALD----ATLDEHDLTWEQLVDVGILCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA---RRLFKEPEV 237
D+ D + GIG +TA+KL+ +HG + +LE ED + A R LF P+V
Sbjct: 224 TDFNDGVSGIGPKTAVKLVGEHGDLWAVLE---------AEDAYIENADLVRELFVNPDV 274
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ I+ PD + ++ E + V + E+I+ + +S R
Sbjct: 275 TDTDFDPAIE---PDLDAARTYVTDEWEIPASEVERGFERIQESVVQSGLDR 323
>gi|448474374|ref|ZP_21602233.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
gi|445817681|gb|EMA67550.1| flap endonuclease-1 [Halorubrum aidingense JCM 13560]
Length = 325
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 153/287 (53%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A R +KR A + A
Sbjct: 50 TTADGVEVANLIGIVQGLPKFFEHDLIPVMVFDGAVTDLKADEVADRRAKREQAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T ++ + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AAERGDAVEAARLEARTQRLTDTIHETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L++L + +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGNPEL-MDLAATLDDLGVDRQGLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RG+G +TA+K I +HG + +LE E IP R LF +P V +
Sbjct: 226 FNEGVRGVGPKTAVKAIAEHGDLWGVLEARGAE---IPN---AAAIRELFMDPPAVDVDV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD E +++V E G ++D VT+ E+I ++ ++ R
Sbjct: 280 DTAVN---PDVEAARSYVVDEWGVDADEVTRGFERIAESQVQTGLDR 323
>gi|448305063|ref|ZP_21494997.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
gi|445589598|gb|ELY43826.1| flap endonuclease-1 [Natronorubrum sulfidifaciens JCM 14089]
Length = 325
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 147/279 (52%), Gaps = 16/279 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R D L
Sbjct: 49 TTADGTEVANLVGIIQGLPKFFEHDITPVMVFDGGPSELKADEIESRREQRETYEDQLEV 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMARRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGNPELMDLEAT--LEHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + + GIG +TA+ I +HG + ++LE + Y R+LF++P VTD
Sbjct: 224 DFNNGVHGIGPKTAISEITEHGDLWSVLEARGDSVEYG-------DRVRQLFRDPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
+ + + PD E ++ E G ++ V + E+I+
Sbjct: 276 DYEFETTLE-PDLEAARAYVTDEWGIDAGEVERGFERIE 313
>gi|448310824|ref|ZP_21500603.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
gi|445607172|gb|ELY61065.1| flap endonuclease-1 [Natronolimnobius innermongolicus JCM 12255]
Length = 325
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 146/288 (50%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R L
Sbjct: 49 TTADGTEVANLIGIVQGLPKFFENDITPVMVFDGGPSELKDDEIESRREQRRSYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LERHELTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + + GIG +TAL I HG + ++LE R + D R+LF+EP VTDE
Sbjct: 224 DFNEGVSGIGPKTALTAITDHGDLWSVLE--ARGAHVEHGD----RVRQLFREPN-VTDE 276
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E F+ E + D V + E+I + ++ R
Sbjct: 277 YEFETALD-PDLEAAREFVCEEWAVDDDEVARGFERIDESVTQTGLDR 323
>gi|448327893|ref|ZP_21517213.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
gi|445617013|gb|ELY70619.1| flap endonuclease-1 [Natrinema versiforme JCM 10478]
Length = 325
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 150/289 (51%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 49 TTGDGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKDDEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDSVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPLTLRQL---TSKGDPELMDLEAT--LAHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + + GIG +TA+ I +HG + ++LE + Y R+LF++P+ VTD
Sbjct: 224 DFNEGVSGIGPKTAISAITEHGDLWSVLEARGDHVEYG-------DRVRQLFRDPD-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E ++ E G ++D V + E+I+ + ++ R
Sbjct: 276 DYEFDAS-VDPDLEAARAYVTDEWGVDADEVARGFERIEESVTQTGLDR 323
>gi|55376971|ref|YP_134821.1| flap endonuclease-1 [Haloarcula marismortui ATCC 43049]
gi|74520713|sp|Q5V5T7.1|FEN_HALMA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|55229696|gb|AAV45115.1| DNA repair protein Rad2 [Haloarcula marismortui ATCC 43049]
Length = 326
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 146/282 (51%), Gaps = 24/282 (8%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E M P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTSNGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+F A LE +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
D+ + I GIG +TA+K + +HG + T+L E+I+ R LF +P
Sbjct: 225 DFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA----------DRIRDLFLDPAA 274
Query: 238 VTDEEQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
D E I S PD + F+ + ++D V + E+I
Sbjct: 275 TDDYE---IPDSIEPDIDAARTFVTDQWEVDADEVARGFERI 313
>gi|422295551|gb|EKU22850.1| flap endonuclease-1 [Nannochloropsis gaditana CCMP526]
Length = 193
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 90/117 (76%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
LTNEAGEVTSH+QG+F RTIR+L +G+KP++VFDG+PP LK EL KR KR A +L
Sbjct: 58 LTNEAGEVTSHIQGLFNRTIRMLASGIKPVFVFDGKPPTLKGGELDKRREKREKAESELK 117
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
+A E N E+ ++ SKR V+ K+ + DCK+LL+LMGVP +EAP EAEAQCAAL K+
Sbjct: 118 KAQEEANVEEQDRQSKRLVRAGKKESADCKKLLELMGVPWLEAPCEAEAQCAALAKA 174
>gi|429190737|ref|YP_007176415.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|448327264|ref|ZP_21516597.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
gi|429134955|gb|AFZ71966.1| flap structure-specific endonuclease [Natronobacterium gregoryi
SP2]
gi|445608848|gb|ELY62671.1| flap endonuclease-1 [Natronobacterium gregoryi SP2]
Length = 325
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 150/290 (51%), Gaps = 14/290 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 47 IYTTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRREQRRTYEEQL 106
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + RT ++T+ + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 107 ETAREEGDELAIAQLESRTQRLTETIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRHGD 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L FGAP LR L S + +M+ E LE +LT++Q ID IL G
Sbjct: 167 ADYVGSEDYDALLFGAPLTLRQLT--SKGDLELMDLEAT--LEHHDLTLEQLIDAAILIG 222
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVT 239
D+ + + GIG +TA+ I +HG + ++LE + Y R+LF++P VT
Sbjct: 223 TDFNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSVEYG-------DRVRQLFRDPN-VT 274
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + PD E ++ E + D V + E+I+ + ++ R
Sbjct: 275 DDYEFDTTLD-PDLEAAREYVCEEWTVDPDEVARGFERIEESVTQTGLDR 323
>gi|448374758|ref|ZP_21558548.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
gi|445659884|gb|ELZ12686.1| flap endonuclease-1 [Halovivax asiaticus JCM 14624]
Length = 326
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 150/288 (52%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L GM + E + P+ VFDG P DLK E+ R +R + L
Sbjct: 50 TTPDGTEVANLVGMVQGLPKFFEHDIVPVMVFDGGPSDLKTDEIESRREQRESYEEQLEV 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + T ++T + + LL+ + VPVVEAP+E EAQ A + ++G
Sbjct: 110 AREEGDQVAIAQLESYTQRLTPTIQETSRELLRFLDVPVVEAPAEGEAQAANIVRNGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FG+PR LR L +S+ P + ++ L++ +LT++Q ID+ I+ G D
Sbjct: 170 YVGSEDYDALLFGSPRTLRQL---TSKGDPEL-MDLQATLDDHDLTLEQLIDVAIMIGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE-NINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
+ + G+G +TAL L+ +HG + + LE + Y R+LF++P VTD+
Sbjct: 226 FNHGVDGVGPKTALSLVHEHGDLWSALEARGDHVEYG-------DRVRQLFRDPN-VTDD 277
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD +++ E ++D V + E+I+ + +S R
Sbjct: 278 YEFTTDLD-PDVAAARDYVCEEWAVDADEVARGFERIEESLVQSGLDR 324
>gi|448651213|ref|ZP_21680282.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
gi|445770740|gb|EMA21798.1| flap endonuclease-1 [Haloarcula californiae ATCC 33799]
Length = 326
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 145/282 (51%), Gaps = 24/282 (8%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E M P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTSNGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+F A LE +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
D+ + I GIG +TA+K + +HG + T+L E+I+ R LF +P
Sbjct: 225 DFNEGISGIGPKTAVKDLHEHGDLYTVLAARGEHIDHA----------DRIRDLFLDPAA 274
Query: 238 VTDEEQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
D E I S PD + F+ + + D V + E+I
Sbjct: 275 TDDYE---IPDSIEPDIDAARTFVTDQWEVDPDEVARGFERI 313
>gi|448397895|ref|ZP_21569833.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
gi|445672111|gb|ELZ24688.1| flap endonuclease-1 [Haloterrigena limicola JCM 13563]
Length = 325
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 150/288 (52%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R + L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKDDEIESRREQRRSYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAVAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMAKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAPR LR L +S+ P +M+ E L+ +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPRTLRQL---TSKGDPELMDLEAT--LDHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + + GIG +TAL I HG + ++LE R + D R+LF++P VTD+
Sbjct: 224 DFNEGVSGIGPKTALSEIADHGDLWSVLE--ARGDHIDHGD----RVRQLFRDPN-VTDD 276
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD ++ E ++D V + E+I+ + ++ R
Sbjct: 277 YEFETTLE-PDLAAAREYVTDEWEIDADEVARGFERIEESVTQTGLDR 323
>gi|448565137|ref|ZP_21636108.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
gi|445715796|gb|ELZ67549.1| flap endonuclease-1 [Haloferax prahovense DSM 18310]
Length = 326
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T +AGE ++L G+ + E + P++VFDG ++K E+AKR +R A L E
Sbjct: 50 TTDAGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDPLLFGAPYTLRQL---TSKGDPEL-MDLDATLDKHDITYEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K++ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKVVTEHGDLWSVLE 253
>gi|448355812|ref|ZP_21544561.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
gi|445634520|gb|ELY87699.1| flap endonuclease-1 [Natrialba hulunbeirensis JCM 10989]
Length = 325
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 150/289 (51%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 49 TTADGTEVANLLGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRREQRQTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVRRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPYTLRQL---TSKGDPELMDLEAT--LAHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + I GIG +TAL I +HG + ++LE E Y + R LF+EP VTD
Sbjct: 224 DFNEGISGIGPKTALSAISEHGDLWSVLEARG-------ETLEYGDRVRALFREPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
E + + PD ++ E ++D V + E+I+ + ++ R
Sbjct: 276 EYEFETTLD-PDIAAAREYVTEEWEVDADEVERGFERIEESVTQTGLDR 323
>gi|311977771|ref|YP_003986891.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|82000308|sp|Q5UQW7.1|YL386_MIMIV RecName: Full=Putative endonuclease L386
gi|55417005|gb|AAV50655.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|308204373|gb|ADO18174.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
gi|339061318|gb|AEJ34622.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
mimivirus]
Length = 473
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 30/219 (13%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G++TSHL+G+F + L+ + PIYVFDG+ PD+K + + KR
Sbjct: 76 LVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKTIEKR------------ 123
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----K 117
K K K+T + + + LL LMG+P + AP EA+ C+ LC
Sbjct: 124 ------------KLRKDRFKLTSEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDS 171
Query: 118 SGQVY--AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
+G+ Y V +ED D L GAP + ++ ++ ++ ++ +L L LTM++FIDL
Sbjct: 172 NGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLGLTMNEFIDL 231
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 214
C+L GCDYCD+I+GIG + A KLI ++ +++ +LE +++
Sbjct: 232 CVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLEFLHK 270
>gi|351737540|gb|AEQ60575.1| putative endonuclease of the XPG family [Acanthamoeba castellanii
mamavirus]
gi|398257219|gb|EJN40827.1| putative endonuclease of the XPG family [Acanthamoeba polyphaga
lentillevirus]
Length = 473
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 30/219 (13%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N G++TSHL+G+F + L+ + PIYVFDG+ PD+K + + KR
Sbjct: 76 LVNREGKLTSHLRGIFYNVLTFLQNDIIPIYVFDGKAPDIKSKTIEKR------------ 123
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALC----K 117
K K K+T + + + LL LMG+P + AP EA+ C+ LC
Sbjct: 124 ------------KLRKDRFKLTSEDIKEVQILLDLMGIPYIIAPGEADVICSWLCARHDS 171
Query: 118 SGQVY--AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
+G+ Y V +ED D L GAP + ++ ++ ++ ++ +L L LTM++FIDL
Sbjct: 172 NGKRYVKGVCTEDSDMLPLGAPYMFKDMLGLNNLNKNIIIVKLKDVLGFLGLTMNEFIDL 231
Query: 176 CILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 214
C+L GCDYCD+I+GIG + A KLI ++ +++ +LE +++
Sbjct: 232 CVLLGCDYCDNIKGIGPKNAYKLIVEYRTLDKVLEFLHK 270
>gi|448729889|ref|ZP_21712201.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
gi|445794210|gb|EMA44763.1| flap endonuclease-1 [Halococcus saccharolyticus DSM 5350]
Length = 325
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 23/294 (7%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AGE ++L G+ + E + P++VFDG DLK E+ +R +R A +
Sbjct: 48 VYTTTAGEEVANLVGIVQGLPKFFEHDVTPVFVFDGGVTDLKTNEVERRREQREQAEERA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG+ + + RT ++T ++ + LL L+ VPVVEAP+E EAQ A + +SG
Sbjct: 108 VEAREAGDAIEAARLEARTQRLTDTIHETTRELLGLLDVPVVEAPAEGEAQAAHMARSGT 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FGAPR LR L +S+ P MEFE L E +LT +Q +D+ IL
Sbjct: 168 VDYAGSEDYDTLLFGAPRTLRGL---TSKGDPECMEFEAT--LTEHDLTWEQLVDVGILC 222
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE----ARRLFKEP 235
G D+ + + G+G +TA+KL+R+HG + LE ED Y E R LF P
Sbjct: 223 GTDFNEGVSGVGPKTAVKLVREHGDLWAALE---------AED-AYIENGDLIRELFLNP 272
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+V + I PD + ++ E + + E+I+ + +S R
Sbjct: 273 DVTDAKFDTDID---PDLDAAREYVTDEWEIPESEIERGFERIEESVVQSGLDR 323
>gi|448640877|ref|ZP_21677664.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
gi|445761402|gb|EMA12650.1| flap endonuclease-1 [Haloarcula sinaiiensis ATCC 33800]
Length = 326
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 145/282 (51%), Gaps = 24/282 (8%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E M P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTSNGEEVANLIGVVQGLPKFFEHDMTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+F A LE +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDF--AATLEHHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETIL----ENINRERYQIPEDWPYQEARRLFKEPEV 237
D+ + I GIG +TA+K + +HG + +L E+I+ R LF +P
Sbjct: 225 DFNEGISGIGPKTAVKDLHEHGDLYAVLAARGEHIDHA----------DRIRDLFLDPAA 274
Query: 238 VTDEEQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
D E I S PD + F+ + ++D V + E+I
Sbjct: 275 TDDYE---IPDSIEPDIDAARTFVTDQWEVDADEVARGFERI 313
>gi|345005776|ref|YP_004808629.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
gi|344321402|gb|AEN06256.1| Flap structure-specific endonuclease [halophilic archaeon DL31]
Length = 326
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 135/242 (55%), Gaps = 10/242 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G+ ++L G+ + EA M P+ VFDG DLK E+ +R +R A +
Sbjct: 48 VYTTSDGDEVANLLGVVQGLPKFFEADMTPVLVFDGGVTDLKSDEVERRREQRKKAEERK 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG+ + + RT ++T ++ + LL + VP +EAP+E EAQCA + +G+
Sbjct: 108 QEAEEAGDSVEAARLEARTQRLTDTIHETTRGLLDRLDVPYIEAPAEGEAQCAHMAATGE 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D++TFGAPR LR L +S+ P + ++ K LE+ +++ +Q +D+ +L G
Sbjct: 168 VDYAGSEDYDTMTFGAPRTLRQL---TSKGHPEL-MDLQKTLEKHDISYEQLVDVALLMG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + + G G +TA+K +++HG I ++E + Y D R LF +P V D
Sbjct: 224 TDFNEGVTGYGPKTAVKAVKEHGDIWGVME--AEDVYVANAD----RVRELFFDPPVTDD 277
Query: 241 EE 242
E
Sbjct: 278 YE 279
>gi|448496208|ref|ZP_21610310.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
gi|445687084|gb|ELZ39377.1| flap endonuclease-1 [Halorubrum californiensis DSM 19288]
Length = 325
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGTVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L L +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLGDLGLDRQGLVDVAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVV 238
+ + +RG+G +TA+K +R+HG + +LE + D P EA R LF +P +V
Sbjct: 226 FNEGVRGVGPKTAVKAVREHGDLWGVLEARDA-------DIPNAEAIRELFMDPPAEDVS 278
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D E PD E ++V E G ++D V + E+I ++ ++ R
Sbjct: 279 VDTE------VNPDVEAAREYVVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|448622799|ref|ZP_21669448.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
gi|445753307|gb|EMA04724.1| flap endonuclease-1 [Haloferax denitrificans ATCC 35960]
Length = 326
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 125/208 (60%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTTEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D ++LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDSVEAARMEARTQRLTETIQDTSRKLLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K++++HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKVVKEHGDLWSVLE 253
>gi|222480031|ref|YP_002566268.1| flap endonuclease-1 [Halorubrum lacusprofundi ATCC 49239]
gi|222452933|gb|ACM57198.1| XPG I domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 325
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG +LK E+A R KR A +
Sbjct: 50 TTTDGVEVANLIGIVQGLPKFFEHDLIPVMVFDGAVTELKADEVADRREKREQAEERRVA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AKERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L++L +D +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RGIG +TA+K +R+HG + +L+ E IP + R LF +P +
Sbjct: 226 FNEGVRGIGPKTAVKAVREHGDLWGVLDARGVE---IPN---AEAIRELFMDPPATDVDV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD + ++V E G +D V + E+I ++ ++ R
Sbjct: 280 DTAVN---PDVDAAREYVVDEWGVAADEVERGFERIAESQVQTGLDR 323
>gi|448453282|ref|ZP_21593725.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
gi|445807602|gb|EMA57685.1| flap endonuclease-1 [Halorubrum litoreum JCM 13561]
Length = 325
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 21/291 (7%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L+L + +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLDLDRQELVDVAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVV 238
+ + +RGIG +TA+ +++HG + +LE + E P EA R LF +P +V
Sbjct: 226 FNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAEV-------PNAEAIRELFMDPPAEDVA 278
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D + PD E ++V E G ++D V + E+I ++ ++ R
Sbjct: 279 VDAD------VNPDVEAARAYVVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|448678733|ref|ZP_21689740.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
gi|445772720|gb|EMA23765.1| flap endonuclease-1 [Haloarcula argentinensis DSM 12282]
Length = 326
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 146/278 (52%), Gaps = 16/278 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTSDGEEVANLIGVVQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQREKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 AREAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+F A LE +L+ +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDF--AATLERHDLSWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + I GIG +TA+K + +HG + +LE R + D R LF +P V D
Sbjct: 225 DFNEGISGIGPKTAVKDLHEHGDLYAVLE--ARGEHIDHAD----RIRDLFLDPAVTDDY 278
Query: 242 EQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
E I S PD + F+ + ++D V + E+I
Sbjct: 279 E---IPDSIEPDIDAARAFVTEQWEVDADEVARGFERI 313
>gi|448568151|ref|ZP_21637728.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
gi|445727101|gb|ELZ78715.1| flap endonuclease-1 [Haloferax lucentense DSM 14919]
Length = 326
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L VPVVEAP+E EAQ + + ++G
Sbjct: 110 AREAGDLVEAARMEARTQRLTETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+KL+ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKLVTEHGDLWSVLE 253
>gi|448733248|ref|ZP_21715493.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
gi|445802982|gb|EMA53282.1| flap endonuclease-1 [Halococcus salifodinae DSM 8989]
Length = 325
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 155/292 (53%), Gaps = 19/292 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AGE ++L G+ + E + P++VFDG DLK E+ +R +R A +
Sbjct: 48 VYTTAAGEEVANLIGVVQGLPKFFEHDITPVFVFDGGVTDLKTDEVERRREQREQAEERA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
AEA EAG+ + + RT ++T ++ + LL+L+ VPVVEAP+E EAQ A + +SG
Sbjct: 108 AEAREAGDAVEAARLEARTQRLTDTIHETTRELLRLLDVPVVEAPAEGEAQAAHMARSGT 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLM---DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 177
V SED D+L FGAP LR L DP MEFE L+E +LT +Q +D+ I
Sbjct: 168 VDYAGSEDYDTLLFGAPHTLRGLTGKGDPEC-----MEFEAT--LKEHDLTWEQLVDVGI 220
Query: 178 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEV 237
L G D+ + + G+G +TA+KL+R+HG + LE +RY D R LF +P+V
Sbjct: 221 LCGTDFNEGVSGVGPKTAVKLVREHGDLWAALE--AEDRYVENGDL----IRELFLDPDV 274
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
I+ PD + ++ E D V + E+I+ + +S R
Sbjct: 275 TDAAFDTDIE---PDLDAAREYVTGEWEIPEDEVERGFERIEESVVQSGLDR 323
>gi|448667547|ref|ZP_21686047.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
gi|445770115|gb|EMA21183.1| flap endonuclease-1 [Haloarcula amylolytica JCM 13557]
Length = 326
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 148/278 (53%), Gaps = 16/278 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG DLK E+ KR +R +L
Sbjct: 50 TTGDGEEVANLIGVIQGLPKFFEHDLTPVFVFDGAVTDLKDDEVEKRREQRQKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A +AG+ + K RT ++T+ D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 ARKAGDSTRVAKLDSRTQRLTETIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+FE LE+ +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDFEAT--LEQHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + I GIG +TA+ + +HG + +LE R+ + D R LF +P V D
Sbjct: 225 DFNEGISGIGPKTAVTELHEHGDLYAVLE--ARDEHIDHAD----RIRNLFLDPAVTDDY 278
Query: 242 EQLQIKWSA-PDEEGLINFLVSENGFNSDRVTKAIEKI 278
E I S PD + F+ + +++ V + E+I
Sbjct: 279 E---IPDSIEPDVDAARAFVTEQWEVDAEEVARGFERI 313
>gi|448504703|ref|ZP_21614044.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|448519062|ref|ZP_21617838.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
gi|445701913|gb|ELZ53885.1| flap endonuclease-1 [Halorubrum distributum JCM 9100]
gi|445704078|gb|ELZ55996.1| flap endonuclease-1 [Halorubrum distributum JCM 10118]
Length = 325
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L+L +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLDLDRQGLVDVAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVV 238
+ + +RGIG +TA+ +++HG + +LE + E P EA R LF +P +V
Sbjct: 226 FNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAEV-------PSAEAIRELFMDPPAEDVA 278
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D + PD E ++V E G ++D V + E+I ++ ++ R
Sbjct: 279 VDAD------VNPDVEAARAYVVDEWGVDADEVERGFERIAESQVQTGLDR 323
>gi|448583086|ref|ZP_21646555.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
gi|445730043|gb|ELZ81635.1| flap endonuclease-1 [Haloferax gibbonsii ATCC 33959]
Length = 326
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G+ ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTSEGKEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGDPEL-MDLDATLDKHDITWEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K++++HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKVVKEHGDLWSVLE 253
>gi|448726443|ref|ZP_21708848.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
gi|445795097|gb|EMA45633.1| flap endonuclease-1 [Halococcus morrhuae DSM 1307]
Length = 325
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 19/292 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AGE ++L G+ + E + P+ VFDG +LK E+ +R ++ A
Sbjct: 48 VYTTAAGEEVANLVGIVQGLPKFFEHDITPVMVFDGGVTELKADEIEQRREQKEKAAKRA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA EAG+ + + RT ++T ++ + LL L+ VP+VEAP+E EAQ A + ++G
Sbjct: 108 KEAREAGDAVEAARLESRTQRLTTTIHETTRELLDLLDVPIVEAPAEGEAQAAHMARTGT 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L FGAP LR L + ++ L+E +LT +Q +D+ IL G
Sbjct: 168 VDYAGSEDYDTLLFGAPHTLRDLTSKGDPECMALD----ATLDEHDLTWEQLVDVGILCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA---RRLFKEPEV 237
D+ D + GIG +TA+KL+ +HG + LE ED + A R LF P+V
Sbjct: 224 TDFNDGVSGIGPKTAVKLVGEHGDLWAALE---------AEDAYIENADLVRELFLNPDV 274
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ I+ PD + ++ E + V + E+I+ + +S R
Sbjct: 275 TDTDFDPAIE---PDLDAARTYVTDEWEIPASEVERGFERIQESVVQSGLDR 323
>gi|448546419|ref|ZP_21626583.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|448548406|ref|ZP_21627673.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
gi|448557600|ref|ZP_21632789.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445702872|gb|ELZ54812.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-646]
gi|445714157|gb|ELZ65924.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-644]
gi|445714501|gb|ELZ66263.1| flap endonuclease-1 [Haloferax sp. ATCC BAA-645]
Length = 326
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A L E
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDSVEAARMEARTQRLTETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ +T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHGITHEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K + +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKAVTEHGDLWSVLE 253
>gi|448414274|ref|ZP_21577413.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
gi|445682567|gb|ELZ34984.1| flap endonuclease-1 [Halosarcina pallida JCM 14848]
Length = 326
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 14/280 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T GE ++L G+ + E + P++VFDG +LK E+++R ++R A +
Sbjct: 48 VYTTADGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTELKDAEVSERRAQREKAEELK 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G+ + RT ++T+ + LL+L+ VPVVEAP+E EAQ + + K G
Sbjct: 108 REAEERGDALAASRLEARTQRLTETIQTTSRELLELLDVPVVEAPAEGEAQASHMAKRGD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FGAP LR L +S+ P +M+ E L L +T +Q ID+ +L
Sbjct: 168 ADYVGSEDYDTLLFGAPYTLRQL---TSKGDPELMDLEAT--LSSLEVTHEQLIDIAVLC 222
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
G D+ D + G+G +TALK ++ G + +L+ R+ Y D R LF +P VT
Sbjct: 223 GTDFNDGVSGVGPKTALKEVKARGDLWAVLD--ARDAYIDNAD----RVRELFLDPP-VT 275
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
D+ + S P+ E F+ E G +++V + E+I+
Sbjct: 276 DDYEFDTDLS-PNVETARAFVTEEWGIPAEKVERGFERIE 314
>gi|313126141|ref|YP_004036411.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|448285981|ref|ZP_21477218.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
gi|312292506|gb|ADQ66966.1| flap endonuclease 1 [Halogeometricum borinquense DSM 11551]
gi|445575574|gb|ELY30047.1| flap endonuclease-1 [Halogeometricum borinquense DSM 11551]
Length = 326
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 155/280 (55%), Gaps = 14/280 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T GE ++L G+ + E + P++VFDG +LK E+++R ++R A +
Sbjct: 48 VYTTTEGEEVANLIGIVQGLPKFFEHDLTPVFVFDGGVTELKDAEVSERRAQREKAEELK 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G+ + + RT ++T ++ + LL+ + VPV+EAP+E EAQ + + K G
Sbjct: 108 KEAEERGDDMEAARLEARTQRLTDVIHETSRGLLERLDVPVIEAPAEGEAQASYMAKQGD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V V SED D+L GAP LR L +S+ P +M+ E L +L++T +Q ID+ IL
Sbjct: 168 VDYVGSEDYDTLLLGAPYTLRQL---TSKGDPELMDLEAT--LSDLDVTQEQLIDIAILC 222
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
G D+ + I G+G +TALK +++HG + T+LE R+ Y D R LF++P VT
Sbjct: 223 GTDFNEGISGVGPKTALKEVKEHGDLWTVLE--ARDDYIENAD----RVRELFRDPP-VT 275
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
D+ + S PD + ++ E +D V + E+I+
Sbjct: 276 DDYEFDTDLS-PDLDAARAYVSEEWEVPADEVARGFERIE 314
>gi|448337894|ref|ZP_21526967.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
gi|445624854|gb|ELY78227.1| flap endonuclease-1 [Natrinema pallidum DSM 3751]
Length = 325
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 151/288 (52%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R L
Sbjct: 49 TTGDGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKDDEIESRREQRRSYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRDLLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L + +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPLTLRQL---TSKGDPELMDLEAT--LAQHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + + GIG +TA+ I +HG + + LE R + D R+LF++P+ VTD+
Sbjct: 224 DFNEGVSGIGPKTAISAITEHGDLWSALE--ARGDHVEHGD----RVRQLFRDPD-VTDD 276
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E +++ E G ++ V + E+I+ + ++ R
Sbjct: 277 YEFEST-VDPDLEAAKSYVTDEWGVDAGEVERGFERIEESVTQTGLDR 323
>gi|448602383|ref|ZP_21656439.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
gi|445747898|gb|ELZ99352.1| flap endonuclease-1 [Haloferax sulfurifontis ATCC BAA-897]
Length = 326
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 121/208 (58%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTTEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L + ++ ++ +AK ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQLTSKGNPELMDLDATLAK----HDITYEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K++ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKVVTEHGDLWSVLE 253
>gi|448365125|ref|ZP_21553668.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
gi|445656129|gb|ELZ08969.1| flap endonuclease-1 [Natrialba aegyptia DSM 13077]
Length = 325
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 145/288 (50%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 49 TTGDGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRRDQRRTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLELLDVPIVEAPAEGEAQAAHMARRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P ++ L+ LT++Q ID IL G D
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMDLQATLDHHGLTLEQLIDAAILIGTD 224
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVVTDE 241
+ + + GIG +TA+ I +HG + +LE RY R LF+EP VTD+
Sbjct: 225 FNEGVSGIGPKTAIAEITEHGDLWGVLEARGDSIRYG-------DRVRELFREPN-VTDD 276
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD + ++ E G + + + E+I+ + ++ R
Sbjct: 277 YEFSTTLD-PDLDAAREYVTDEWGVDPGEIERGFERIEESVTQTGLDR 323
>gi|353228411|emb|CCD74582.1| putative flap endonuclease-1 [Schistosoma mansoni]
Length = 133
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
MD+L FG P LRHL +RK+ + EF + +LE L LTMDQFIDLCIL GCDY D+IR
Sbjct: 1 MDALAFGTPVLLRHLTFSEARKMAIQEFNLTSVLEGLGLTMDQFIDLCILLGCDYVDTIR 60
Query: 189 GIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQI 246
GIG + AL L+ ++ SI+ +L+NI++ +Y +P+DWPY++A++LF PE VTD +++
Sbjct: 61 GIGPKKALDLLHKYQSIDCVLKNIDKSKYIVPDDWPYEDAKKLFLNPE-VTDPSSIEV 117
>gi|448592407|ref|ZP_21651514.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
gi|445731412|gb|ELZ82996.1| flap endonuclease-1 [Haloferax elongans ATCC BAA-1513]
Length = 326
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 122/208 (58%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A L E
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEARLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T + + LL+L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTDTIQETSRELLRLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITWEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I G+G +TA+K +++HG + +LE
Sbjct: 226 FNEGISGVGPKTAVKEVKKHGDLWAVLE 253
>gi|448425472|ref|ZP_21582802.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|448485392|ref|ZP_21606617.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
gi|445680543|gb|ELZ32986.1| flap endonuclease-1 [Halorubrum terrestre JCM 10247]
gi|445818046|gb|EMA67913.1| flap endonuclease-1 [Halorubrum arcis JCM 13916]
Length = 325
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREQAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLELLDVPIVEAPAEGEAQCAHMAATGAVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L+L +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLDLDRQGLVDVAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA-RRLFKEP---EVV 238
+ + +RGIG +TA+ +++HG + +LE + E P EA R LF +P +V
Sbjct: 226 FNEGVRGIGPKTAVTAVKEHGDLWGVLEARDAEV-------PSAEAIRELFMDPPAEDVA 278
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D + PD E ++V E G +++ V + E+I ++ ++ R
Sbjct: 279 VDAD------VNPDVEAARAYVVDEWGVDANEVERGFERIAESQVQTGLDR 323
>gi|448343822|ref|ZP_21532739.1| flap endonuclease-1 [Natrinema gari JCM 14663]
gi|445621905|gb|ELY75370.1| flap endonuclease-1 [Natrinema gari JCM 14663]
Length = 325
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKHDEIESRREQRRSYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPLTLRQL---TSKGAPELMDLEAT--LAHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE--NINRERYQIPEDWPYQEARRLFKEPEVVT 239
D+ + + GIG +TA+ I +HG + ++LE ++ E R+LF++P+ VT
Sbjct: 224 DFNEGVSGIGPKTAIAAITEHGDLWSVLEARGVHVEY--------GDRVRQLFRDPD-VT 274
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + + PD E ++++ E ++ V + +I+ + ++ R
Sbjct: 275 DDYEFEST-VDPDLEAAKSYVIDEWSVDAGEVERGFGRIEESVTQTGLDR 323
>gi|397774993|ref|YP_006542539.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
gi|397684086|gb|AFO58463.1| flap structure-specific endonuclease [Natrinema sp. J7-2]
Length = 325
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 150/290 (51%), Gaps = 18/290 (6%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK E+ R +R L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFEHDITPVMVFDGGPSELKHDEIESRREQRRSYEAQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + K G
Sbjct: 109 AREEGDAVAIAQLESRTQRLTPTIQETSRELLRLLDVPIVEAPAEGEAQAAHMVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FG+P LR L +S+ P +M+ E L +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGSPLTLRQL---TSKGAPELMDLEAT--LAHHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILE--NINRERYQIPEDWPYQEARRLFKEPEVVT 239
D+ + + GIG +TA+ I +HG + ++LE ++ E R+LF++P+ VT
Sbjct: 224 DFNEGVSGIGPKTAIAAITEHGDLWSVLEARGVHVEY--------GDRVRQLFRDPD-VT 274
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + + PD E ++++ E ++ V + +I+ + ++ R
Sbjct: 275 DDYEFEST-VDPDLEAAKSYVIDEWSVDAGEVERGFGRIEESVTQTGLDR 323
>gi|448318654|ref|ZP_21508168.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
gi|445598248|gb|ELY52311.1| flap endonuclease-1 [Natronococcus jeotgali DSM 18795]
Length = 325
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 149/289 (51%), Gaps = 16/289 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ R E + P+ VFDG P LK +E+ R +R + L
Sbjct: 49 TTADGTEVANLIGIVQGLARFFEHDVTPVMVFDGGPSQLKSEEIESRREQRRTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VPVVEAP+E EAQ A L K G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLELLDVPVVEAPAEGEAQAAHLVKRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V SED D+L FGAP LR L +S+ P +M+ E LE +LT++Q ID IL G
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDPELMDLEAT--LERHDLTLEQLIDAAILIGT 223
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEVVTD 240
D+ + + GIG +TA+ I + G + ++LE R E Y + R+LF++P VTD
Sbjct: 224 DFNEGVSGIGPKTAISEITERGDLWSVLEA----RGDTIE---YGDRVRQLFRDPN-VTD 275
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ + PD E ++ E + V ++ E+I+ ++ R
Sbjct: 276 DYGFETT-IEPDLEAARAYVTDEWSVAAGEVERSFERIEEYATQTGLDR 323
>gi|448600910|ref|ZP_21656289.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
gi|445734923|gb|ELZ86479.1| flap endonuclease-1 [Haloferax alexandrinus JCM 10717]
Length = 326
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L VPVVEAP+E EAQ + + ++G
Sbjct: 110 AREAGDAAEAARMEARTQRLTETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+KL+ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKLVTEHGDLWSVLE 253
>gi|284164367|ref|YP_003402646.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
gi|284014022|gb|ADB59973.1| flap structure-specific endonuclease [Haloterrigena turkmenica DSM
5511]
Length = 325
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 150/291 (51%), Gaps = 16/291 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 47 VYTTADGTEVANLVGIVQGLPKFFENDITPVMVFDGGPSELKEDEIESRRDQRRTYEEQL 106
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ I + RT ++T + + LL+ + VP+VEAP+E EAQ A + + G
Sbjct: 107 EVAREEGDQVAIAQLESRTQRLTPTIQETSRELLRRLDVPIVEAPAEGEAQAAHMVRRGD 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V SED D+L FG+P LR L +S+ P +M+ E L+ +LT++Q ID IL
Sbjct: 167 ADYVGSEDYDALLFGSPLTLRQL---TSKGDPELMDLEAT--LDHHDLTLEQLIDAAILI 221
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVV 238
G D+ + + GIG +TA+K I +HG + ++LE+ Y R+LF++P V
Sbjct: 222 GTDFNEGVSGIGPKTAIKAITEHGDLWSVLEDRGAHIEYG-------DRVRQLFRDPN-V 273
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
TD+ + PD E ++ E + V + E+I+ + ++ R
Sbjct: 274 TDDYEFDTDLD-PDLEAAREYVCEEWRVDEGEVDRGFERIEESVTQTGLDR 323
>gi|433418201|ref|ZP_20404929.1| flap endonuclease-1 [Haloferax sp. BAB2207]
gi|432199801|gb|ELK55943.1| flap endonuclease-1 [Haloferax sp. BAB2207]
Length = 326
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 123/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L
Sbjct: 50 TTGEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L VPVVEAP+E EAQ + + ++G
Sbjct: 110 AREAGDAAEAARMEARTQRLTETIQDTSRELLSLFDVPVVEAPAEGEAQASYMARTGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITHEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+KL+ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKLVTEHGDLWSVLE 253
>gi|448439982|ref|ZP_21588230.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
gi|445690499|gb|ELZ42709.1| flap endonuclease-1 [Halorubrum saccharovorum DSM 1137]
Length = 325
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E G+ P+ VFDG +LK E+A R KR A + A
Sbjct: 50 TTADGVEVANLIGVAQGLPKFFEHGLTPVMVFDGAVTELKADEVADRREKREAAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +SR P + ++A L+ L +D +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSRGDPEL-MDLAATLDGLGFDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RGIG +TA+K +R+HG + +L+ E IP + R LF +P E
Sbjct: 226 FNEGVRGIGPKTAVKAVREHGDLWGVLDARGAE---IPN---AEAIRELFMDPPATDVEV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD + ++V E G +D V + E+I ++ ++ R
Sbjct: 280 DATVN---PDVDAAREYVVEEWGVAADEVERGFERIAESQVQTGLDR 323
>gi|448612021|ref|ZP_21662451.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
gi|445742782|gb|ELZ94276.1| flap endonuclease-1 [Haloferax mucosum ATCC BAA-1512]
Length = 326
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 145/279 (51%), Gaps = 12/279 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG D+K E+AKR +R A + L
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTDMKDDEVAKRREQREKAEERLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL+L+ VPVVEAP+E EAQ + + G
Sbjct: 110 AREAGDAAEAARMEARTQRLTQTIQDTSRDLLRLLDVPVVEAPAEGEAQASYMAHKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L + +++ +Q ID+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLAKHDISWEQLIDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + I G+G +TA+K +++HG + ++LE IP R F +P V D +
Sbjct: 226 FNEGITGVGPKTAVKEVKKHGDLWSVLEARGE---SIPN---ADRVREFFVDPPVTDDYD 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
PD + F+ + D V + E+I+ A
Sbjct: 280 YDTD--IEPDVDAAREFVTETWEIDPDEVRRGFERIEDA 316
>gi|385803787|ref|YP_005840187.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
gi|339729279|emb|CCC40515.1| flap endonuclease Fen1 [Haloquadratum walsbyi C23]
Length = 326
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 12/279 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T E+G ++L G+ + E + P++VFDG +LK +E+ +R R +A + A
Sbjct: 50 TTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V
Sbjct: 110 AEERGDELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D
Sbjct: 170 YVGSEDYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ D I GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E
Sbjct: 226 FNDGISGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEY 278
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
L + PD + +++V + +D V + E+I+ +
Sbjct: 279 TLHTAIN-PDMDAARSYVVDDWEVPADEVERGFERIETS 316
>gi|110668340|ref|YP_658151.1| flap endonuclease-1 [Haloquadratum walsbyi DSM 16790]
gi|121684788|sp|Q18HK0.1|FEN_HALWD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|109626087|emb|CAJ52538.1| flap endonuclease Fen1 [Haloquadratum walsbyi DSM 16790]
Length = 326
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 12/279 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T E+G ++L G+ + E + P++VFDG +LK +E+ +R R +A + A
Sbjct: 50 TTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V
Sbjct: 110 AEERGDELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D
Sbjct: 170 YVGSEDYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ D I GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E
Sbjct: 226 FNDGISGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEY 278
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
L + PD + +++V + +D V + E+I+ +
Sbjct: 279 TLHTTIN-PDMDAARSYVVDDWEVPADEVERGFERIETS 316
>gi|148508143|gb|ABQ75935.1| flap structure-specific endonuclease [uncultured haloarchaeon]
Length = 337
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 150/279 (53%), Gaps = 12/279 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T E+G ++L G+ + E + P++VFDG +LK +E+ +R R +A + A
Sbjct: 61 TTESGVEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDEEVQERRVAREEAVELQAA 120
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ + RT ++T+ ++ + LL + VP++EAP+E EAQ A + G V
Sbjct: 121 AEERGDELAASRLEARTQRLTETIHETTRGLLNRLDVPIIEAPAEGEAQAAEMAIRGDVD 180
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP +R L +S+ P + ++ L+ NLT +Q +D+ IL G D
Sbjct: 181 YVGSEDYDTLLFGAPYTVRQL---TSKGDPEL-MDLQTTLKNQNLTREQLVDVAILCGTD 236
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ D I GIG TA+ I HG + ++L+ R+ + D R LF +P VT+E
Sbjct: 237 FNDGISGIGPATAISAINDHGDLWSVLD--ARDEFIQHAD----RVRSLFLDPP-VTNEY 289
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
L + PD + +++V + +D V + E+I+ +
Sbjct: 290 TLHTAIN-PDMDAARSYVVDDWEVPADEVERGFERIETS 327
>gi|238597041|ref|XP_002394219.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
gi|215462894|gb|EEB95149.1| hypothetical protein MPER_05929 [Moniliophthora perniciosa FA553]
Length = 156
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 85/102 (83%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
MLTN+AGE TSHL G F RTIR++E G+KP YVFDG+PP+LKK L+KR+++R +A ++
Sbjct: 53 MLTNDAGETTSHLMGFFYRTIRIVENGIKPAYVFDGKPPELKKGVLSKRFARREEAKEEG 112
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV 102
EA E G ED+++FS+RTVKVTKQHN++C RLLKLMG+PV+
Sbjct: 113 EEAKEVGTAEDVDRFSRRTVKVTKQHNEECVRLLKLMGIPVI 154
>gi|409722869|ref|ZP_11270258.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|448722908|ref|ZP_21705436.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
gi|445788575|gb|EMA39284.1| flap endonuclease-1 [Halococcus hamelinensis 100A6]
Length = 325
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 153/292 (52%), Gaps = 19/292 (6%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AGE ++L G+ + E + P++VFDG DLK E+ +R ++R + +
Sbjct: 48 VYTTAAGEEVANLMGVVQGLPKFFEHDITPVFVFDGGVTDLKTDEIEQRRAEREEVEERA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
AEA EAGN + + RT ++T ++ + LL L+ VPVVEAP+E EAQ A + +SG
Sbjct: 108 AEAREAGNAIEAARLESRTQRLTDTIHETTRELLSLLDVPVVEAPAEGEAQAAHMARSGT 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L FG+PR LR L SS M+FE L + +LT + +D+ IL G
Sbjct: 168 VDYAGSEDYDTLLFGSPRTLRKLT--SSGDPECMDFEAT--LADHDLTWEGLVDVGILCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEA---RRLFKEPEV 237
D+ + + GIG +TA+KL+R+HG + LE ED + A R LF P+V
Sbjct: 224 TDFNEGVSGIGPKTAVKLVREHGDLWAALE---------AEDAYVENADLVRELFLNPDV 274
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
E I +PD ++ E D V + E+I+ + +S R
Sbjct: 275 TDVEFDPDI---SPDLAAARRYVTDEWEIPEDEVDRGFERIEESVVQSGLDR 323
>gi|322369323|ref|ZP_08043888.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
gi|320551055|gb|EFW92704.1| flap endonuclease-1 [Haladaptatus paucihalophilus DX253]
Length = 326
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 152/287 (52%), Gaps = 14/287 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T E G ++L G+ + E + P++VFDG DLK E+ R +R + L
Sbjct: 48 VYTTEDGTEVANLVGVVQGLPKFFEHDLTPVFVFDGHVTDLKSDEIEDRREQREKLEERL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
EA E G+ ++ + T ++T + + LL L+ VPV+EAP+E EAQ A + ++G
Sbjct: 108 EEAREEGDAIEVARLDAHTQRLTPVIQETTRELLDLLDVPVIEAPAEGEAQAAHMARTGA 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V +ED D+L GAP LR L +S+ P +M+FE L+E ++T +Q +D+ IL
Sbjct: 168 VDYAGTEDYDALLLGAPLTLRQL---TSKGNPELMDFEAT--LDEHDITWEQLVDIAILC 222
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
G D+ + + G+G +TALK + +HG + +LE R+ Y D R +F EP+ VT
Sbjct: 223 GTDFNEGVSGVGPKTALKGVTEHGDLWGVLE--ERDAYIENVD----VIRGMFLEPD-VT 275
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
DE + + PD E ++ E D V + E+I+ + ++
Sbjct: 276 DEFEFDPEMD-PDIEAAREYVTEEWDIREDEVARGFERIEESITQTG 321
>gi|448466285|ref|ZP_21599082.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
gi|445814415|gb|EMA64379.1| flap endonuclease-1 [Halorubrum kocurii JCM 14978]
Length = 325
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVADRREKREAAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDAIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGSVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L++L +D +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RGIG +TA+K +R+HG + +L+ E IP + R LF +P +
Sbjct: 226 FNEGVRGIGPKTAVKAVREHGDLWGVLDARGAE---IPN---AEAIRELFMDPPATDVDV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD + ++V E G +D V + E+I ++ ++ R
Sbjct: 280 DTAVN---PDVDAAREYVVDEWGVAADEVERGFERIAESQVQTGLDR 323
>gi|389848285|ref|YP_006350524.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|448618490|ref|ZP_21666727.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|388245591|gb|AFK20537.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
gi|445746861|gb|ELZ98319.1| flap endonuclease-1 [Haloferax mediterranei ATCC 33500]
Length = 326
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 14/288 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L E
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRRKQREKAEERLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL+L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTETIQDTSRELLRLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ LE+ +++ +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLEKHDISWEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD-E 241
+ + I G+G +TA+K +++HG + ++LE IP R F +P V D +
Sbjct: 226 FNEGITGVGPKTAVKEVKKHGDLWSVLEARGD---SIPN---ADRVREFFLDPPVTDDYD 279
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
I PD + F+ + D V + E+I+ + ++ R
Sbjct: 280 YNTGID---PDVDAAREFVTETWEVDPDEVRRGFERIEKSVTQTGLDR 324
>gi|452206818|ref|YP_007486940.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
gi|452082918|emb|CCQ36195.1| flap endonuclease Fen1 [Natronomonas moolapensis 8.8.11]
Length = 327
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 142/279 (50%), Gaps = 15/279 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T E+GE ++L G+ + EA + P++VFDG +LK E+ R +R D+L
Sbjct: 50 TTESGEEVANLVGVVQGLPKFFEADVTPVFVFDGGVAELKDDEVESRREQRERYEDELDA 109
Query: 63 AVEAGNKED-IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
A I RT ++T+ + LL L+ VPVVEAP+E EAQ A + + G V
Sbjct: 110 ARAGEADAAEIATLESRTQRLTETIQTTTRELLSLLDVPVVEAPAEGEAQAAYMARYGDV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSG 180
SED D+L GAP LR L +S+ P M+FE + LE+L LT ++ +D IL G
Sbjct: 170 DYAGSEDYDTLLLGAPYTLRGL---TSKGDPECMDFE--RTLEDLGLTWEELVDAAILMG 224
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + I GIG +TA+KL+R+HG + L+ IP R +F +P VTD
Sbjct: 225 TDFNEGIDGIGPKTAVKLLREHGDLWGALDARGE---SIPN---ADRIREMFLDP-AVTD 277
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
E + PD + ++ ++ V + E+I+
Sbjct: 278 EYDYDTE-IEPDMDAARQYVTDTWEVPAEEVARGFERIE 315
>gi|448352039|ref|ZP_21540831.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
gi|445631838|gb|ELY85062.1| flap endonuclease-1 [Natrialba taiwanensis DSM 12281]
Length = 316
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFENDVTPVMVFDGGPSELKEDEIESRRDQRRTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLQLLDVPIVEAPAEGEAQAAHMARRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P ++ L+ +LT++Q ID IL G D
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMDLQATLDHHDLTLEQLIDAAILIGTD 224
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVV 238
+ + + GIG +TA+ I +HG + ++LE RY R LF+EP V
Sbjct: 225 FNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG-------DRVRELFREPNVT 274
>gi|448534324|ref|ZP_21621652.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
gi|445704806|gb|ELZ56713.1| flap endonuclease-1 [Halorubrum hochstenium ATCC 700873]
Length = 325
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 19/290 (6%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKRERAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L+L +D +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLDLDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP---EVVT 239
+ + +RGIG +TA+ +R+HG + +L+ + E IP + R LF +P +V
Sbjct: 226 FNEGVRGIGPKTAVTAVREHGDLWGVLDARDAE---IPN---AEAIRELFMDPPATDVAV 279
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D + PD E ++V E G + D V + E+I ++ ++ R
Sbjct: 280 DAD------VNPDVEAAREYVVDEWGVDGDEVERGFERIAESQVQTGLDR 323
>gi|359415965|ref|ZP_09208345.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
gi|358033683|gb|EHK02208.1| flap endonuclease-1 [Candidatus Haloredivivus sp. G17]
Length = 251
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 119/204 (58%), Gaps = 8/204 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + G++TSHL G+F R I LLE ++P+YVFDG PDLK++E +R KR +A +
Sbjct: 47 LKDSDGDITSHLSGLFYRNINLLEKDIRPVYVFDGAIPDLKQKETTERRKKREEAKKEWE 106
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ E G + + ++ K+T ++ K LL MG+P ++A SE EAQ A + G V
Sbjct: 107 KLKEEGKISEAYSKATQSSKLTGDMIEESKELLDAMGIPYIQASSEGEAQAAFMSSEGDV 166
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRK--------IPVMEFEVAKILEELNLTMDQFI 173
YAV S+D D + FGA R +R+L +RK + E+ K+LEEL+L+ +Q +
Sbjct: 167 YAVGSQDWDCMLFGADRMVRNLTSRKTRKTSSGKRKEVKQQRIELEKVLEELDLSREQLV 226
Query: 174 DLCILSGCDYCDSIRGIGGQTALK 197
L ++ G D+ D I GIG + A +
Sbjct: 227 MLGMVMGTDFNDGIHGIGPKKAWR 250
>gi|292656986|ref|YP_003536883.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|448293584|ref|ZP_21483689.1| flap endonuclease-1 [Haloferax volcanii DS2]
gi|291370541|gb|ADE02768.1| DNA repair flap endonuclease Fen1 [Haloferax volcanii DS2]
gi|445570445|gb|ELY25008.1| flap endonuclease-1 [Haloferax volcanii DS2]
Length = 326
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 124/208 (59%), Gaps = 4/208 (1%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L E
Sbjct: 50 TTSEGEEVANLVGIVQGIPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T+ D + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTETIQDTSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITYEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE 210
+ + I GIG +TA+K++ +HG + ++LE
Sbjct: 226 FNEGITGIGPKTAVKVVTEHGDLWSVLE 253
>gi|448362827|ref|ZP_21551431.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
gi|445647449|gb|ELZ00423.1| flap endonuclease-1 [Natrialba asiatica DSM 12278]
Length = 291
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 12/237 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG P +LK+ E+ R +R + L
Sbjct: 49 TTADGTEVANLVGIVQGLPKFFENDVVPVMVFDGGPSELKEDEIESRRDQRRTYEEQLET 108
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G++ I + RT ++T + + LL+L+ VP+VEAP+E EAQ A + + G
Sbjct: 109 AREEGDEVAIAQLESRTQRLTPTIQETSRELLELLDVPIVEAPAEGEAQAAHMARRGDAD 168
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P ++ L+ LT++Q ID IL G D
Sbjct: 169 YVGSEDYDALLFGAPLTLRQL---TSKGDP-ERMDLQATLDHHGLTLEQLIDAAILIGTD 224
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRLFKEPEVV 238
+ + + GIG +TA+ I +HG + ++LE RY R LF+EP V
Sbjct: 225 FNEGVSGIGPKTAIAEITEHGDLWSVLEARGDSIRYG-------DRVRELFREPNVT 274
>gi|399576495|ref|ZP_10770250.1| flap endonuclease-1 [Halogranum salarium B-1]
gi|399237939|gb|EJN58868.1| flap endonuclease-1 [Halogranum salarium B-1]
Length = 326
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 146/277 (52%), Gaps = 12/277 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G+ ++L G+ + E + PI+VFDG +LK E+ R ++ A + L E
Sbjct: 50 TTSDGDEVANLVGLVQGLPKFFEHDLTPIFVFDGGVTELKDAEVEARREQKEKAQERLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T ++ + L L+ VP +EAP+E EAQ + + + G
Sbjct: 110 ARERGDAVEAARLEARTQRLTAVIHETTRDFLDLLDVPYIEAPAEGEAQASYMARRGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L + +++ +Q +D+ IL G D
Sbjct: 170 YVGSEDYDTLLFGAPFTLRQL---TSKGDPEL-MDLDATLAKHDISYEQLVDIAILVGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ I+GIG +TALK +++HG + +L+ R+ + D R LF +P V D +
Sbjct: 226 FNPGIKGIGPKTALKAVKEHGDLWGVLD--ARDLHIDHAD----RIRDLFLDPPVTDDYD 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
PD E +++V E ++D V + E+I+
Sbjct: 280 VDLD--IDPDLEAARSYVVDEWEVDADEVARGFERIE 314
>gi|448454659|ref|ZP_21594212.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
gi|445814746|gb|EMA64705.1| flap endonuclease-1 [Halorubrum lipolyticum DSM 21995]
Length = 325
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG +LK E+A R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTELKADEVADRREKREAAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDAIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGSVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L++L +D +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLDDLGFDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RGIG +TA+K +R+HG + +L+ E IP + R LF +P +
Sbjct: 226 FNEGVRGIGPKTAVKAVREHGDLWGVLDARGVE---IPN---AEAIRELFMDPPATDVDV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD + ++V E G +D V + E+I ++ ++ R
Sbjct: 280 DTAVN---PDVDAAREYVVDEWGVAADEVERGFERIAESQVQTGLDR 323
>gi|448578528|ref|ZP_21643963.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
gi|445727069|gb|ELZ78685.1| flap endonuclease-1 [Haloferax larsenii JCM 13917]
Length = 326
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 145/277 (52%), Gaps = 12/277 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG ++K E+AKR +R A + L E
Sbjct: 50 TTSEGEEVANLVGIVQGLPKFFEHDLTPVFVFDGGVTEMKDDEVAKRREQREKAEERLEE 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A EAG+ + + RT ++T + + LL L+ VPVVEAP+E EAQ + + + G
Sbjct: 110 AREAGDAVEAARMEARTQRLTDTIQETSRELLSLLDVPVVEAPAEGEAQASYMARKGDAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V SED D+L FGAP LR L +S+ P + ++ L++ ++T +Q +D+ +L G D
Sbjct: 170 YVGSEDYDTLLFGAPYTLRQL---TSKGNPEL-MDLDATLDKHDITWEQLVDIAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + I G+G +TA+K +++HG + +LE IP R F +P VTDE
Sbjct: 226 FNEGISGVGPKTAVKEVKKHGDLWAVLEARGD---SIPN---ADRVREFFLDPP-VTDEY 278
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK 279
PD E ++ + D V + E+I+
Sbjct: 279 DYDTDID-PDVEAARKYVTETWEVDPDEVRRGFERIE 314
>gi|448499403|ref|ZP_21611330.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
gi|445697358|gb|ELZ49423.1| flap endonuclease-1 [Halorubrum coriense DSM 10284]
Length = 325
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 150/290 (51%), Gaps = 19/290 (6%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLIPVMVFDGAVTDLKADEVAERREKREAAEERKAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VPVVEAP+E EAQCA + +G V
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLELLDVPVVEAPAEGEAQCAQMAAAGTVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L L +D+ +L G D
Sbjct: 170 HAGSEDYDTLLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLGLDRQGLVDVAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEP---EVVT 239
+ + +RG+G +TA+K + +HG + +L+ + E IP + R LF +P EV
Sbjct: 226 FNEGVRGVGPKTAVKAVTEHGDLWGVLDARDAE---IPN---AEAIRELFMDPPATEVAV 279
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D + PD ++V E G + D V + E+I ++ ++ R
Sbjct: 280 DAD------VNPDVAAAREYVVDEWGVDPDEVERGFERIAESQVQTGLDR 323
>gi|448634703|ref|ZP_21675101.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
gi|445749676|gb|EMA01121.1| flap endonuclease-1 [Haloarcula vallismortis ATCC 29715]
Length = 326
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 146/277 (52%), Gaps = 14/277 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T GE ++L G+ + E + P++VFDG DLK E+ +R +R +L
Sbjct: 50 TTSGGEEVANLIGVIQGLPKFFEHDLTPVFVFDGAVTDLKDDEVERRREQREKYESELEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A +AG+ + K RT ++T D + LL+L+ VP+V+AP+E E Q + + + G V
Sbjct: 110 ARKAGDSTRVAKLDSRTQRLTDTIVDTTRDLLELLDVPIVDAPAEGEGQASVMARRGDVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED D+L FGAP LR + +S+ P +M+FE L + +LT +Q +D IL G
Sbjct: 170 YVGTEDYDALLFGAPMTLRQI---TSKGDPELMDFEAT--LSQHDLTWEQLVDAAILMGT 224
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241
D+ + I GIG +TA+K + +HG + +LE R + D R LF +P VTD+
Sbjct: 225 DFNEGISGIGPKTAVKELHEHGDLYAVLE--ARSEHIDHAD----RIRDLFLDP-AVTDD 277
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI 278
+ PD + F+ + ++D V + ++I
Sbjct: 278 YVIPDSVD-PDIDAARAFVTEQWEVDADEVARGFKRI 313
>gi|222445719|ref|ZP_03608234.1| hypothetical protein METSMIALI_01361 [Methanobrevibacter smithii
DSM 2375]
gi|222435284|gb|EEE42449.1| XPG I-region [Methanobrevibacter smithii DSM 2375]
Length = 187
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Query: 96 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155
+MG+P +EA E EAQ A L ++G +AVAS+D D L FGA R +R+L S+ + +E
Sbjct: 1 MMGIPYIEAYGEGEAQAAYLVENGDAWAVASQDYDCLLFGAKRVVRNLAINSN--LGNLE 58
Query: 156 -FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINR 214
+ + ++L+EL++ +Q ID+ IL G D+ + ++G+G +TALKL ++ G +E L
Sbjct: 59 YYNLKRVLDELDINREQLIDMGILIGTDFSEGLKGVGAKTALKLAKK-GELENKL----- 112
Query: 215 ERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA 274
+ Q E R +F V TD +I+W P + +I+FL E+GF+ DRV+KA
Sbjct: 113 AKLQEKSSHDISEVREIFLNHNVNTD---YKIRWKKPAKNDIIDFLCEEHGFSQDRVSKA 169
Query: 275 IEKIKAAKNKSSQGRLESFF 294
+K+K SSQ LE +F
Sbjct: 170 CDKLKNL--NSSQKSLEDWF 187
>gi|47180383|emb|CAG14230.1| unnamed protein product [Tetraodon nigroviridis]
Length = 103
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 78/102 (76%)
Query: 48 KRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 107
K+ ++A+A LA+A +AG +E+IEKF+KR VKVTKQHND+CK+LL LMGVP +EAP E
Sbjct: 1 KKQGEKAEAEKLLAQAQQAGEQENIEKFTKRLVKVTKQHNDECKKLLTLMGVPYIEAPCE 60
Query: 108 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 149
AEA CAAL K+G+V+ A+EDMD LTFG LRHL ++
Sbjct: 61 AEASCAALAKAGKVFGTATEDMDGLTFGTNVLLRHLTASEAK 102
>gi|448431107|ref|ZP_21584935.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
gi|445688254|gb|ELZ40519.1| flap endonuclease-1 [Halorubrum tebenquichense DSM 14210]
Length = 325
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P+ VFDG DLK E+A+R KR A + A
Sbjct: 50 TTADGVEVANLIGVVQGLPKFFEHDLVPVMVFDGAVTDLKADEVAERREKRERAEERRAA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + RT ++T + + LL+L+ VP+VEAP+E EAQCA + +G
Sbjct: 110 AEERGDAVEAARLEARTQRLTDTIQETTRELLRLLDVPIVEAPAEGEAQCAHMAATGTAD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
SED D+L FGAP LR L +S+ P + ++A L +L+L +D +L G D
Sbjct: 170 HAGSEDYDALLFGAPTTLRQL---TSKGDPEL-MDLAATLSDLDLDRQGLVDAAMLCGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ + +RGIG +TA+ +R+HG + +L+ + E IP + R LF +P
Sbjct: 226 FNEGVRGIGPKTAVTAVREHGDLWGVLDARDAE---IPN---AEAIRELFMDPPAADVAV 279
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
+ PD E ++V E G + D V + E+I ++ ++ R
Sbjct: 280 DADVN---PDVEAARAYVVDEWGVDGDEVERGFERIAESQVQTGLDR 323
>gi|448407650|ref|ZP_21573845.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
gi|445674900|gb|ELZ27435.1| flap endonuclease-1 [Halosimplex carlsbadense 2-9-1]
Length = 326
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 146/290 (50%), Gaps = 14/290 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T GE ++L G+ + E + P++VFDG DLK E+ +R R + L
Sbjct: 48 IYTTADGEEVANLVGVVQGLPKFFEHDITPVFVFDGSVVDLKDDEVEQRREDREKREEQL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A E G+ + + +T ++T + +L+L+ VPV+EAP+E EAQ + + G
Sbjct: 108 EQAREEGDGVAVARLESQTQRLTDTILSTTREVLELLDVPVIEAPAEGEAQATHMAREGA 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP-VMEFEVAKILEELNLTMDQFIDLCILS 179
V V +ED D+L GAP LR L +S+ P +M+FE L++ ++T +Q +D IL
Sbjct: 168 VDYVGTEDYDALLLGAPLTLRQL---TSKGDPELMDFEAT--LDDRDITWEQLVDAAILM 222
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
G D+ + I G G +TA+ +R+HG I + E + Y D R LF P VT
Sbjct: 223 GTDFNEGISGYGPKTAVTAVREHGDIWGVFE--AEDVYVDNAD----RIRDLFLNP-AVT 275
Query: 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + + PD E F+ E D V + E+I+ + ++ R
Sbjct: 276 DDYEFD-REVEPDLEAARAFVCEEWEVAEDEVERGFERIEQSVVQTGLDR 324
>gi|255634420|gb|ACU17575.1| unknown [Glycine max]
Length = 95
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 64/71 (90%)
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKP 296
V+TDE++L IKWS+PDEEGLI FLV+ENGFNSDRVTKAIEKIK AKNKSSQGRLESFFKP
Sbjct: 2 VITDEKELDIKWSSPDEEGLITFLVNENGFNSDRVTKAIEKIKVAKNKSSQGRLESFFKP 61
Query: 297 VANTSAPIKRK 307
N S PIKRK
Sbjct: 62 TVNPSVPIKRK 72
>gi|354611070|ref|ZP_09029026.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
gi|353195890|gb|EHB61392.1| Flap structure-specific endonuclease [Halobacterium sp. DL1]
Length = 327
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 15/288 (5%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T AG ++L G+ + E + P++V+DG +LK +E+ +R +R + + L
Sbjct: 48 VYTTAAGTEVANLVGVVQGLPKFFEHDLTPVFVWDGGVTELKDEEIEERRDQREEYEEQL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCK-SG 119
A+A EAG+ + + RT ++T+ ++ + L L+ VP VEAP+E EAQ + + +
Sbjct: 108 ADAREAGDHLEAARLDARTQRLTETIHETTRELFDLLDVPQVEAPAEGEAQASYMARVDD 167
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV-MEFEVAKILEELNLTMDQFIDLCIL 178
V S+D D L G+P LR L +S+ P M+F+ L+ +LT +Q +D+ IL
Sbjct: 168 AVDYAGSDDYDCLLLGSPLTLRQL---TSKGDPERMDFQAT--LDRHDLTWEQLVDVGIL 222
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
G D+ I G G +TALK I +HG + +L+ + Y D R LF P+ V
Sbjct: 223 CGTDFNPGIDGFGPKTALKAIHEHGDLWAVLD--AEDEYVEYGD----RIRELFLNPD-V 275
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
TD+ ++ S PD F+ + ++D V + +I+ A ++
Sbjct: 276 TDDYDIETALS-PDVAAAREFVTEQWEVDADEVERGFSRIEEAVTQTG 322
>gi|257388818|ref|YP_003178591.1| flap endonuclease-1 [Halomicrobium mukohataei DSM 12286]
gi|257171125|gb|ACV48884.1| XPG I domain protein [Halomicrobium mukohataei DSM 12286]
Length = 326
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 143/279 (51%), Gaps = 12/279 (4%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE 62
T G ++L G+ + E + P++VFDG +LK E+ +R R + L
Sbjct: 50 TTSDGTEVANLIGVVQGLPKFFEHDLTPVFVFDGGVTELKDDEVEQRREAREAREEKLEA 109
Query: 63 AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
A E G+ + + + +T ++T + +L+L+ VPVV+AP+E EAQ A + + V
Sbjct: 110 ARERGDSKAVARLDSQTQRLTDTILTTTREVLRLLDVPVVDAPAEGEAQAAHMARQNVVD 169
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V +ED D+L GAP LR L SS +M+F+ L+ +T +Q +D IL G D
Sbjct: 170 YVGTEDYDALLLGAPLTLRQLT--SSGDPELMDFQAT--LDHHGITWEQLVDAAILMGTD 225
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ I G+G +TA+KL+++HG + L+ R+ + D R LF +P VTD+
Sbjct: 226 FNPGIDGVGPKTAIKLVKEHGDLWGALD--ARDAHVEHGD----RIRELFLDP-AVTDDY 278
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
L + + PD + ++ E + V +A E I+A+
Sbjct: 279 DLDLAVN-PDLDAAREYVTGEWEVDEGEVARAFEHIEAS 316
>gi|300711017|ref|YP_003736831.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|448296888|ref|ZP_21486938.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|299124700|gb|ADJ15039.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
gi|445580565|gb|ELY34943.1| flap endonuclease-1 [Halalkalicoccus jeotgali B3]
Length = 325
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 148/286 (51%), Gaps = 13/286 (4%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G+ + E + P++VFDG DLK E+ R + + A +
Sbjct: 48 VYTTAEGTEVANLVGIVQGLPKFFENDLVPVFVFDGVVTDLKDGEIDDRRAAKERAAAEA 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A E G++ + + RT ++T + LL+L+ VP+VEAP+E EAQ A + KS
Sbjct: 108 RNARERGDRVEAARLEARTQRLTDTIQRTTRELLELLDVPIVEAPTEGEAQAAHMAKSAD 167
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V +ED D+L FGAP LR L +S+ P ++A L LT +Q +D+ IL G
Sbjct: 168 VDYAGTEDYDALLFGAPLTLRQL---TSKGDPEC-MDLAATLAAHELTHEQLVDVGILCG 223
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 240
D+ + + G+G +TA+K I +HG + +L+ + ++ + R LF +P+ VTD
Sbjct: 224 TDFNEGVHGMGPKTAVKAIHEHGDLAGVLDARDAVVGEM------EAVRELFLQPD-VTD 276
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS 286
+ S PD G + V++ +D V++ E+I+ + ++
Sbjct: 277 DYGFDTALS-PDVAGAREY-VADWEIPADEVSRGFERIEESVTQTG 320
>gi|52548675|gb|AAU82524.1| DNA repair protein [uncultured archaeon GZfos18C8]
Length = 190
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Query: 105 PSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV------MEFEV 158
PSE EAQ A + +SG V V S+D DSL FGAP +R+L RK+P ++ E+
Sbjct: 1 PSEGEAQAARMARSGDVRFVGSQDYDSLLFGAPEVVRNLAVGGKRKLPGKKVYVDVKLEI 60
Query: 159 AKI---LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 215
++ L+ L +T +Q ID+ IL G DY I GIG + AL+LI +HGSIE L +
Sbjct: 61 IELQPNLDRLGITEEQLIDIAILVGTDYDPGIHGIGAKKALQLIYKHGSIEDALSILGES 120
Query: 216 RYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
+ E + F +P+V D + W PDE + L E+GF+ RV KA+
Sbjct: 121 IEDL------DEIKNFFLDPDVTDD---YSLTWKKPDEPKITELLCHEHGFSEVRVAKAV 171
Query: 276 EKIKAAKNKSSQGRLESF 293
E++ A + Q L+ +
Sbjct: 172 ERLVRASDSMGQSTLDMW 189
>gi|310831026|ref|YP_003969669.1| putative DNA endonuclease [Cafeteria roenbergensis virus BV-PW1]
gi|309386210|gb|ADO67070.1| putative DNA endonuclease [Cafeteria roenbergensis virus BV-PW1]
Length = 321
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE+TSH+ G+F +T+ L+ + PIY+FDG+PP+ K+ + R + A D L
Sbjct: 51 LRNNKGEITSHILGLFNKTVWLINNNIIPIYIFDGKPPEFKQDTIQNRRDIKKKAFDKLK 110
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
N++D K+ KRT ++++ + K LL LMG+P ++A EA+ CA LC+ V
Sbjct: 111 NC---DNEKDRIKYFKRTTSLSRKQIIESKELLDLMGIPYLQADGEADILCAKLCEKNIV 167
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
V +ED+D LTFG + ++ + KI + IL++ ++T QFI CI+ GC
Sbjct: 168 DYVLTEDIDILTFGGTKIIKSIFKEGDIKI----IDKLTILKKYDITYKQFIIFCIILGC 223
Query: 182 DY 183
DY
Sbjct: 224 DY 225
>gi|76802527|ref|YP_327535.1| flap endonuclease-1 [Natronomonas pharaonis DSM 2160]
gi|121696716|sp|Q3IPG8.1|FEN_NATPD RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|76558392|emb|CAI49983.1| flap endonuclease Fen1 [Natronomonas pharaonis DSM 2160]
Length = 328
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 14/238 (5%)
Query: 3 TNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA--DATDDL 60
T GE ++L G+ + E + P++VFDG DLK E+ KR +R +A +
Sbjct: 50 TTADGEEVANLIGVVQGLPKFFEHDVTPVFVFDGGVSDLKADEVEKRRDQRERYEAQLEA 109
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
A+ + + +I RT ++T + + LL + VPVVEAP+E EAQ A + + G
Sbjct: 110 AKERDETDAAEIAALESRTQRLTDTIVETTRELLARLDVPVVEAPAEGEAQAAHMARRGD 169
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V SED D+L GAP LR L S+ M+FE L +L+ + +D IL G
Sbjct: 170 ADYVGSEDYDALLLGAPYTLRGLT--SNGDPECMDFEAT--LSTHDLSWEGLVDAAILMG 225
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE-ARRLFKEPEV 237
D+ + + G+G +TA+KLI +HG + ++L + +D P+ + R LF +P V
Sbjct: 226 TDFNEGLSGVGPKTAVKLIHEHGDLRSVLAARD-------DDIPHADRIRELFLDPAV 276
>gi|308321602|gb|ADO27952.1| flap endonuclease 1-b [Ictalurus furcatus]
Length = 140
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 71/89 (79%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+L N+ GE TSHL GMF RTIR+L++G+KP+YVFDG+PP LK EL KR +RA+A L
Sbjct: 52 VLQNDDGETTSHLMGMFYRTIRMLDSGIKPVYVFDGKPPQLKSGELEKRGERRAEAEKLL 111
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDD 89
A+A E G +E+I+KFSKR VKVTKQHND+
Sbjct: 112 AQAQETGEQENIDKFSKRLVKVTKQHNDE 140
>gi|15790386|ref|NP_280210.1| flap endonuclease-1 [Halobacterium sp. NRC-1]
gi|169236120|ref|YP_001689320.1| flap endonuclease-1 [Halobacterium salinarum R1]
gi|28380023|sp|Q9HQ27.1|FEN_HALSA RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|226700952|sp|B0R5F5.1|FEN_HALS3 RecName: Full=Flap endonuclease 1; Short=FEN-1; AltName: Full=Flap
structure-specific endonuclease 1
gi|10580870|gb|AAG19690.1| DNA repair protein [Halobacterium sp. NRC-1]
gi|167727186|emb|CAP13972.1| flap endonuclease Fen1 [Halobacterium salinarum R1]
Length = 327
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 21/294 (7%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDL 60
+ T G ++L G + E G+ P++V+DG +LK E+A R +R + L
Sbjct: 48 VYTTSDGTEVANLVGAVQGLPKFFEHGLTPVFVWDGGVTELKDDEIADRREQRERYEEQL 107
Query: 61 AEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+A EAG+ + + RT ++T ++ + L L+ +P VEAP+E EAQ A + ++
Sbjct: 108 DDAREAGDAAEAARLDARTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDD 167
Query: 121 VYAVA-SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
A S+D D L G+P LR L SS +M+F+ L E +LT +Q +D+ IL
Sbjct: 168 AVDYAGSDDYDCLLLGSPVTLRQLT--SSGHPELMDFD--ATLAEHDLTWEQLVDVGILC 223
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVT 239
G D+ I G G TAL I +HG + +L R LF P+ VT
Sbjct: 224 GTDFNPGIDGFGPTTALDAIGEHGDLWDVLAAEGEHVAH------GDRIRELFLNPD-VT 276
Query: 240 DEEQLQIKWSAPDEEGLIN----FLVSENGFNSDRVTKAIEKIKAAKNKSSQGR 289
D+ + PD I+ F+ E ++D V + E+I AA ++ R
Sbjct: 277 DDYVID-----PDVSPAIDAARAFVTDEWEVDADAVARGFERIDAAAAQTGLDR 325
>gi|328774021|gb|EGF84058.1| hypothetical protein BATDEDRAFT_2594, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 284
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 128/252 (50%), Gaps = 10/252 (3%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
+H+ G F R +LL G+ P++VFDG P LK+Q +A R +RA L + E
Sbjct: 28 AHIIGFFRRICKLLFYGILPVFVFDGATPALKRQTIASRRHRRATVEQSLRKTAERILSL 87
Query: 71 DIEKFSKRTVKVTKQHNDDC-KRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
++ KR + V Q C LL + G+P + A +EAE+QCA L K G V + ++D
Sbjct: 88 QLQ---KRALIVNWQQRKSCVPLLLFIFGIPYIVATTEAESQCAFLQKQGLVEGIVTDDS 144
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D FG ++ M +R + + + + ++ E+L L+ ++ I L L G DY + G
Sbjct: 145 DVFVFGGEVVYKN-MFTQTRSVEI--YTMDRLQEQLGLSREKLILLAYLLGSDYTPGLVG 201
Query: 190 IGGQTALKLIRQHGSIETILENIN-RERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKW 248
IG T+++++ + +++ N ++ IP+ +P + P V D++ W
Sbjct: 202 IGPVTSVEILNEWCNLDYSKGGRNLAKKLDIPDGFPDLRVLNAYINP--VVDQDLTNFTW 259
Query: 249 SAPDEEGLINFL 260
PD EG+ +FL
Sbjct: 260 GEPDLEGIRHFL 271
>gi|164662529|ref|XP_001732386.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
gi|159106289|gb|EDP45172.1| hypothetical protein MGL_0161 [Malassezia globosa CBS 7966]
Length = 150
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 27/136 (19%)
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
MD+LTFGAP L++L +K+PV E + K LEEL++ M+QF+DLC+L GCDY D +R
Sbjct: 1 MDTLTFGAPILLKNLTASEQKKLPVTEVHLGKALEELDMPMEQFVDLCMLLGCDYLDPVR 60
Query: 189 GIGGQTALKLIRQHGSIETILENINRER---------------------------YQIPE 221
G+G + ALKLI+ H ++E ILE++ + Q+P+
Sbjct: 61 GVGPKKALKLIQDHRTLERILEHLKQADDAKKAKASDAHGSDDDEATSIKKRPGGIQVPD 120
Query: 222 DWPYQEARRLFKEPEV 237
WP+QEAR LF PEV
Sbjct: 121 FWPFQEARELFLTPEV 136
>gi|327409739|ref|YP_004347159.1| putative Flap endonuclease [Lausannevirus]
gi|326784913|gb|AEA07047.1| putative Flap endonuclease [Lausannevirus]
Length = 363
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 129/258 (50%), Gaps = 29/258 (11%)
Query: 39 PDLKKQELAKRYSKRADATDDLAE--AVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKL 96
P ++E K K+ AT DL++ E I + K++V +T + + K LL +
Sbjct: 119 PKELQEEARKLLQKKKYATTDLSDPHTFTQTISESIATYEKQSVPLTNERIESVKNLLDV 178
Query: 97 MGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEF 156
+GV V A E + AA G+++ V+S D D +GAP F +D K+ ++
Sbjct: 179 LGVRYVTAEGEGDGVLAAYAVHGKIFGVSSADTDCHAYGAP-FAIPEIDVVGEKLTLVHR 237
Query: 157 EVAKILEELNLTMDQFIDLCILSGCDYCDSI-----------RGIGGQTALKLIRQHGSI 205
E + LE+L LT +QF+DLCIL GCDY D RGIG +TALKLI++HGSI
Sbjct: 238 E--QYLEDLGLTKEQFLDLCILCGCDYNDRASFEAKTAGKRPRGIGCKTALKLIKEHGSI 295
Query: 206 ETI--LENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSE 263
E I LE IN Y+ R LF+ P+ + D + S P ++ L FL
Sbjct: 296 EKIGELEGINIAPLN------YERCRELFRIPDKIED----IVPGSRPQKDSLELFLQEN 345
Query: 264 N-GFNSDRVTKAIEKIKA 280
N F+SD V + +K
Sbjct: 346 NVHFDSDYVLECWGPVKV 363
>gi|384498961|gb|EIE89452.1| hypothetical protein RO3G_14163 [Rhizopus delemar RA 99-880]
Length = 118
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+++ K+SKRT+K+T++H ++CKRLL MG+P +EAPSEAEAQCA L K G+V+A ASEDM
Sbjct: 14 KEVTKYSKRTIKITREHTEECKRLLTAMGIPYLEAPSEAEAQCAELAKEGKVFAAASEDM 73
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 171
D+L F P LRHL SR + E + K+L L L M Q
Sbjct: 74 DTLVFKTPILLRHLTFSGSR---IHEIHLDKLLNGLGLDMIQ 112
>gi|47227957|emb|CAF97586.1| unnamed protein product [Tetraodon nigroviridis]
Length = 176
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 163
AP++AEA CA L K G V AVASEDMD+L FGA +R S + V+E+ + K+LE
Sbjct: 1 APADAEALCAWLVKEGTVDAVASEDMDTLPFGANILIRQF--KSKKDGEVIEYSLTKLLE 58
Query: 164 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 215
L + +F+DLCIL GCDYC+ I G+G + AL+LI++H +IE +L +INR+
Sbjct: 59 RLQINHQEFVDLCILLGCDYCEKICGLGPRRALRLIQKHRTIENVLLHINRK 110
>gi|328857380|gb|EGG06497.1| hypothetical protein MELLADRAFT_36164 [Melampsora larici-populina
98AG31]
Length = 288
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 21/226 (9%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR-YSKRADATDDLAEAVE 65
G +H+ G R +LL G+KP++VFDG P LKKQ + + Y DD+ V+
Sbjct: 45 GLTNAHILGFLRRISKLLYYGIKPVFVFDGGAPVLKKQTIVEHLYFSSIFKLDDMRHQVD 104
Query: 66 AGNKEDIEKFSKRTVK-------VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
A ++ K + VK V Q + D + +L+L G+P V +P EAEAQCA L K
Sbjct: 105 A----EVNKLKDQRVKDRRDADDVNLQMSKDIQSMLRLFGIPYVISPMEAEAQCAELLKK 160
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCI 177
G V + ++D D FG R +++ + + +E + LE EL L+ + I L
Sbjct: 161 GLVDGIITDDSDVFLFGGTRVYKNMFNQNK----FVECYLMNDLEKELGLSRQRLIQLAY 216
Query: 178 LSGCDYCDSIRGIGGQTALKLIR----QHGSIETILENINRERYQI 219
L G DY + + G+G TA++++ +H ++ + IN +R+ +
Sbjct: 217 LLGSDYTEGLAGVGPVTAMEILSEFDDEHLTVAGLDSLINFKRWWM 262
>gi|323456781|gb|EGB12647.1| hypothetical protein AURANDRAFT_4733, partial [Aureococcus
anophagefferens]
Length = 238
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
+HL G R +LL G++P++VFDG P +K + + +R +R DD EA A +
Sbjct: 52 NAHLIGTLRRVAKLLYHGVRPVFVFDGGVPVVKARLIRQRQMRREKNRDD-REA--ASLR 108
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
++ + S+ VT+ +D LL+L+GVP V AP EAEAQCAAL +G V ++D
Sbjct: 109 REMSRSSRDADSVTEDMREDTMHLLRLLGVPYVVAPMEAEAQCAALEAAGLCEGVVTDDS 168
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
D+ FGA R +++ D RK V + + +L L D+F L +L G DY + + G
Sbjct: 169 DAFCFGARRVYKNIFD--DRKY-VEAYYASDCARDLRLGRDEFCALALLLGGDYDNGVAG 225
Query: 190 IGGQTALKLI 199
+G A++++
Sbjct: 226 VGVVNAMEVL 235
>gi|291242835|ref|XP_002741315.1| PREDICTED: flap endonuclease 1-like [Saccoglossus kowalevskii]
Length = 334
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R + L ++P++V DG PP+LK EL KR + D+ + E K
Sbjct: 48 HLRNLFYRVVNLSRLNIQPVFVIDGDPPELKSNELVKRAHIQGDSKNKHGE-----KKPG 102
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+++ +T++ +C +LL ++GVP ++A EAEA CA L K G V V +ED D+
Sbjct: 103 MQRTRLKTLQY------ECCKLLDVLGVPYIQATGEAEAMCALLNKEGLVDGVFTEDGDA 156
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRGI 190
+GA + ++L S V +++ I E+L L ++ I + +L GCDY D + +
Sbjct: 157 FLYGAKKVYKNLT-AGSNGSHVDVYDMLDIEEKLTLNRNKLIAMALLMGCDYLSDGVPSV 215
Query: 191 GGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 250
G A +L+ G I+ + ER+ +W ++++ D++ QI S
Sbjct: 216 GKTNATQLMHSLGDIDVL------ERFH---EWTQEKSQ----------DDDPNQIVTSD 256
Query: 251 PDEEG 255
D++G
Sbjct: 257 EDDDG 261
>gi|124800975|ref|XP_001349570.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
gi|3845138|gb|AAC71842.1| DNA repair endonuclease, putative [Plasmodium falciparum 3D7]
Length = 1516
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 36/252 (14%)
Query: 74 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 133
K K +++ + NDD K LL G+P +++P EAEAQC+ L A+ S+D D L
Sbjct: 1199 KLKKNNIEINDEMNDDIKLLLNFFGIPYIQSPCEAEAQCSYLNNKNYCDAIISDDSDVLV 1258
Query: 134 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 193
F +++ ++K V +E I E+L L ++ I++ +L GCDY + GIG
Sbjct: 1259 FSGKTVIKNFF---NKKKTVEVYEKKAIEEKLGLYQEELINISLLCGCDYTIGVHGIGIV 1315
Query: 194 TALKLIRQHGSIETI----------LENINRERYQ------------------IPEDWPY 225
AL++I+ + E + I++ Y P ++P
Sbjct: 1316 NALEIIKAFPNFEDLKILKDIVSNPFRKIDKNMYNEEIQQFLNTHKNYKLNWIFPNNFPD 1375
Query: 226 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN-- 283
+E + FK P+V TD ++ + W PD + + FL + ++V + I N
Sbjct: 1376 REVYKCFKYPKVCTDIKKFE--WHVPDIKSITKFLHKTTNISEEKVLNVLNPILQKYNVN 1433
Query: 284 -KSSQGRLESFF 294
++ Q ++E FF
Sbjct: 1434 VRTYQSKIEDFF 1445
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
+HL F R +LL ++PI++FDG PP+LK++ + +R K+ + + + E
Sbjct: 81 AHLYFFFLRICKLLYYNIRPIFIFDGNPPELKRKTIFQRNIKKRNYEEKFKKTAE 135
>gi|403223884|dbj|BAM42014.1| uncharacterized protein TOT_040000390 [Theileria orientalis strain
Shintoku]
Length = 784
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 40/229 (17%)
Query: 80 VKVT--KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAP 137
+K+T K + DD + LL+L GVP + APSEAE+QCA + K G YAV S+D D+L FGA
Sbjct: 469 IKLTQNKMYYDDTQALLELFGVPYLIAPSEAESQCAYMNKKGDCYAVISDDSDALVFGAR 528
Query: 138 RFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTAL 196
L++ + + V E A +I +EL + Q + ++ GCDY + +RGIG AL
Sbjct: 529 CLLKNFYNDN-----VFELYTAERIRKELGIGRKQLALIAVICGCDYTNGVRGIGVVNAL 583
Query: 197 KLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPYQE 227
++I+ + E + E +IN R + D+P +E
Sbjct: 584 EVIKAYPKFEDLHEFKHWATSDCSVESATSDECQLRSEYKKAHINYRVHWTFSSDFPNRE 643
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIE 276
A LF P TDE L W PD + L+ F++ + ++V + ++
Sbjct: 644 AYDLFLRP-TTTDEYHLS--WKKPDFKPLLEFMLKRSSLPQEQVKQCLD 689
>gi|156084190|ref|XP_001609578.1| Rad2 endonuclease [Babesia bovis T2Bo]
gi|154796830|gb|EDO06010.1| Rad2 endonuclease, putative [Babesia bovis]
Length = 1002
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 116/253 (45%), Gaps = 40/253 (15%)
Query: 88 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPS 147
D LL L GVP + APSEAEAQCA L +G + V S+D D+L FGA R ++ +
Sbjct: 687 DKVPALLDLFGVPFIVAPSEAEAQCAHLNNTGLCFGVISDDSDTLAFGAKRVFKNFYSGN 746
Query: 148 SRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE 206
V E VA +IL EL L ++ L IL GCDY +RGIG AL++I+ + +
Sbjct: 747 -----VFEVYVADRILHELGLGRNEIALLAILCGCDYTPGVRGIGVVNALEVIKAFPTFD 801
Query: 207 TILE----------------------------NIN-RERYQIPEDWPYQEARRLFKEPEV 237
+ E ++N R + D+P +EA L P V
Sbjct: 802 DLYEFRRWATSDCDITTVTQDTCPLKQAYKESHVNYRMHWSFGSDFPNREAYNLLLSPVV 861
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPV 297
+ + KW PD +G++ F+ + + +T + K++ + G + F P
Sbjct: 862 SS---TFKPKWRTPDYDGIMRFMSKHSALPASEMTTCMSKLRGGDD--FDGYILEDFVPE 916
Query: 298 ANTSAPIKRKVYL 310
++ + +K K L
Sbjct: 917 IHSRSHVKGKRSL 929
>gi|326433198|gb|EGD78768.1| exonuclease 1 [Salpingoeca sp. ATCC 50818]
Length = 686
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 10/238 (4%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+Q R L G+ P+ V DG+ K +E +R R + + + AG++
Sbjct: 55 HIQYCMKRLAMLQHYGVTPVVVLDGRNLPSKGEEEKQRRESRRNHLKQGTDLLRAGHRSK 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ +R + +T + R + G+ V AP EA+AQ A L S V+AV +ED D
Sbjct: 115 ALEHFQRAIDITPEIGHALVRACRAAGIECVVAPYEADAQLAFLATSKYVHAVITEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSRKIPVME--FEVAKILEELNL---TMDQFIDLCILSGCDYCDS 186
L +G PR L + + + + M+ F+ A+I +N T QF +CIL+GCDY S
Sbjct: 175 LVYGCPRVLFKMDEYGTGQEIRMQRLFQGAQISTTINFMSWTQRQFRKMCILAGCDYLPS 234
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 244
G+G +TA K+ + H +I+ I++ I ++P D+ +F+ E+ D + +
Sbjct: 235 PTGLGVKTAFKIAKIHDNIDKIVQVIASRGIRVPADYA-----EMFRRAELTFDHQPV 287
>gi|443703547|gb|ELU01026.1| hypothetical protein CAPTEDRAFT_17841 [Capitella teleta]
Length = 464
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 39/311 (12%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
+HL G++ R +LL +KP++VFDG P LKKQ D DL + +E N
Sbjct: 52 NAHLIGLYHRICKLLYYRIKPVFVFDGGVPALKKQT--------TDELIDLQKVLEVENT 103
Query: 70 E---DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
E + + +T+Q N + + L++L G+P V +P EAEAQCA L + Q +
Sbjct: 104 ELHNTRNQQDRMATSLTEQMNIEAQELVRLFGLPYVVSPMEAEAQCAFLDLTSQTNGTVT 163
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
+D D FG ++L + S R + FE ++L LT ++ +++ ++ G DY
Sbjct: 164 DDSDIWLFGGRNVYKNLFN-SKRHVEWFRFE--DFEKQLFLTREKLVNMALVCGSDYTPG 220
Query: 187 IRGIG--------------GQTALKLIRQHG-------SIETILENINRERYQIPEDWPY 225
I G G +L+L +Q ++ I + I E +P
Sbjct: 221 IHNAGPVAAMEIMGEFPAPGLRSLQLFKQWWDEAQTKVKVQETKVKIKLRKLVINEGFPS 280
Query: 226 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN-- 283
+ + P V DE + W PD + L + + G+N +++ +++ + N
Sbjct: 281 EAVVDAYMNPTV--DESREDFSWGRPDLDLLRQYAKNRFGWNKEKIDESLLPVMKQINAK 338
Query: 284 KSSQGRLESFF 294
+ SQ R+ FF
Sbjct: 339 QDSQLRMTQFF 349
>gi|68076243|ref|XP_680041.1| DNA repair endonuclease [Plasmodium berghei strain ANKA]
gi|56500911|emb|CAH98970.1| DNA repair endonuclease, putative [Plasmodium berghei]
Length = 1262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 49/299 (16%)
Query: 34 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 93
+G D+ K+ + K+ ++ ++L + + +K + + ++ N+D K L
Sbjct: 895 LEGISEDMDKETIDKQLNENQKKGEELMK--------EYKKLKNNNITINEEMNEDIKLL 946
Query: 94 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 153
L G+P ++AP EAEAQC+ L + A+ S+D D + F +++ ++K V
Sbjct: 947 LDFFGIPYIQAPCEAEAQCSYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF---NKKKTV 1003
Query: 154 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS------IET 207
+E I +L L D I++ +L GCDY + G+G AL++++ + ++
Sbjct: 1004 EVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGVGIVNALEIVKAFPTFDDLKILKE 1063
Query: 208 ILENINRERYQ--------------------------IPEDWPYQEARRLFKEPEVVTDE 241
I+ N R+ YQ P+++P +E + FK P+V D
Sbjct: 1064 IVSNPLRDIYQENDENNYSDEIKKFLNTHRNYKLNWIFPKNFPDKEVYKCFKYPKVCKDI 1123
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI---KAAKNKSSQGRLESFFKPV 297
+ +I+W AP+ +I++L + D++ ++ I K +S Q R+E FF PV
Sbjct: 1124 K--KIEWHAPNMNKIIHYLNKTTNISEDKIFNVLDPILKKYNVKTRSYQLRIEDFF-PV 1179
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
H+ F R +LL ++PI++FDG PP+LKK+ + +R KR + + + + E
Sbjct: 81 HIYFFFLRICKLLYYNIRPIFIFDGIPPELKKRTIFQRNLKRKNNEEKVKKTAE 134
>gi|71029044|ref|XP_764165.1| DNA repair protein Rad2 [Theileria parva strain Muguga]
gi|68351119|gb|EAN31882.1| DNA repair protein rad2, putative [Theileria parva]
Length = 835
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 38/214 (17%)
Query: 78 RTVKVTKQ--HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
++V VT + + DD +LL+ GVP + APSEAE+QCA + +SG+ YAV S+D DSL FG
Sbjct: 517 QSVSVTHKNPYYDDVHKLLEHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFG 576
Query: 136 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 195
A L++ + ++ + + +I EL + Q + I+ GCDY ++GIG A
Sbjct: 577 AKCLLKNFYNDKVFEL----YTLDRIRRELGIGRKQLALIAIICGCDYTTGVKGIGIVNA 632
Query: 196 LKLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPYQ 226
L++I+ + + + + + +IN R + D+P +
Sbjct: 633 LEVIKAYPTFDDLYDFRDWATNDCNLKSAVADECPIRKSYKIAHINYRVNWTFSPDFPNR 692
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
EA +F P VTD +LQ WS P E L +F+
Sbjct: 693 EAYNMFLNPS-VTDNYKLQ--WSQPKMESLTSFM 723
>gi|156093896|ref|XP_001612986.1| DNA repair endonuclease [Plasmodium vivax Sal-1]
gi|148801860|gb|EDL43259.1| DNA repair endonuclease, putative [Plasmodium vivax]
Length = 1473
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 42/295 (14%)
Query: 34 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 93
DG PPD + R S+ DA D ++ +K K +++ ++ N+D K L
Sbjct: 1085 LDGPPPDDRPH---LRDSRALDAYLDRTNRENEHLMKEYKKLKKNNIEINEEMNEDIKIL 1141
Query: 94 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 153
L + G+P V++P EAEAQC+ L A+ S+D D L F +++ + RK V
Sbjct: 1142 LNMFGIPYVQSPCEAEAQCSYLNCKNYCDAIISDDSDVLVFNGKTVIKNFFN---RKKTV 1198
Query: 154 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET------ 207
+E I ++L L D+ I+L +L GCDY + G+G AL++I+ + E
Sbjct: 1199 EVYERKLIEDKLGLYQDELINLSLLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKKLKE 1258
Query: 208 ILENINRERYQ-------------------------IPEDWPYQEARRLFKEPEVVTDEE 242
I+ N R+ Q P ++P +E R FK P+V TD +
Sbjct: 1259 IVSNPFRDLSQDDKYFHNEEVKRFLQTHKNYKLNWIFPNNFPDREVYRCFKYPKVCTDIQ 1318
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI---KAAKNKSSQGRLESFF 294
+ Q W P+ + FL ++++ + I + +S Q +++ FF
Sbjct: 1319 KFQ--WHLPNLSHITKFLNKATNIAEEKISNVLNPILQKYDVRVRSYQLKIDDFF 1371
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
HL F R +LL ++PI++FDG PP+LK++ + +R KR + + + E
Sbjct: 82 HLYFFFLRICKLLYYNIRPIFIFDGTPPELKRKTIFQRNVKRRNHEEKFKKTAE 135
>gi|449676998|ref|XP_002156033.2| PREDICTED: DNA repair protein complementing XP-G cells-like,
partial [Hydra magnipapillata]
Length = 431
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 45/280 (16%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK--QELAKRYSKRADATDDLAEAVEAGN 68
+HL MF R +LL G+KP++VFDG P+LKK Q +AK D L VE N
Sbjct: 23 AHLVLMFHRICKLLFYGIKPVFVFDGNVPELKKNTQVIAK-------IEDFLKLEVEL-N 74
Query: 69 KEDIE------KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
KE IE K +++ ++ + +D + LL+L G+P + +P EAEAQCAAL
Sbjct: 75 KEKIELELETRKQTRQAATLSAEVYNDVQDLLQLFGIPYLVSPMEAEAQCAALNLLKLTN 134
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE-LNLTMDQFIDLCILSGC 181
++D D FGA +++ + KIP E +K LE L LT ++ I + L+G
Sbjct: 135 GTITDDSDIFLFGAENVYKNIFNKD--KIP--ECYSSKDLETLLYLTREKLIAVAFLTGS 190
Query: 182 DYCDSIRGIGGQTALKLIRQHG--SIETILEN---------------INRERYQ-----I 219
DY + + G+GG TA+++++ + E L N ++R + + I
Sbjct: 191 DYTEGLPGVGGITAMEILQAFAKKTAEETLANFRAWVMSPNVTGNKVLDRLKAKLALDGI 250
Query: 220 PEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINF 259
P ++ E + P + D+ + + +W PD E + F
Sbjct: 251 PSNFNSNEVWEAYLNP--IVDQSKEKFEWGNPDIESIKQF 288
>gi|221053197|ref|XP_002257973.1| DNA repair endonuclease [Plasmodium knowlesi strain H]
gi|193807805|emb|CAQ38510.1| DNA repair endonuclease, putative [Plasmodium knowlesi strain H]
Length = 1431
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 126/276 (45%), Gaps = 42/276 (15%)
Query: 56 ATDDLAEAVEAGNKE---DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQC 112
A DD E N+E + K K +++ ++ N+D K LL + G+P V++P EAEAQC
Sbjct: 1070 ALDDYMEKANKENEELVKEYRKLKKNNIEINEEMNEDIKILLNMFGIPYVQSPCEAEAQC 1129
Query: 113 AALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF 172
+ L A+ S+D D L F +++ ++K V +E I ++L L D+
Sbjct: 1130 SYLNCKNYCDAIISDDSDVLVFNGKTVIKNFF---NKKKTVEVYERKLIEDKLGLYQDEL 1186
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET------ILEN-----------INRE 215
I+L +L GCDY + G+G AL++I+ + E I+ N N E
Sbjct: 1187 INLSLLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKKLKEIVSNPFRDLSKDDKYFNNE 1246
Query: 216 RYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 261
Q P+++P +E + FK P+V TD E+ Q W P+ + FL
Sbjct: 1247 EVQRFLKTHKNYKLNWIFPKNFPDREVYKCFKYPKVCTDIEKFQ--WHLPNLTHISRFLQ 1304
Query: 262 SENGFNSDRVTKAIEKI---KAAKNKSSQGRLESFF 294
E +++ + I K +S Q ++ FF
Sbjct: 1305 KETNIAEEKIYNVLNPILQKYDVKVRSYQLKIHDFF 1340
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
HL F R +LL ++PI++FDG PP+LK++ + +R KR + + + E
Sbjct: 82 HLYFFFLRICKLLYYNIRPIFIFDGTPPELKRKTIFQRNMKRRNDEERFQKTAE 135
>gi|299749580|ref|XP_001836208.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
gi|298408502|gb|EAU85580.2| flap structure-specific endonuclease [Coprinopsis cinerea
okayama7#130]
Length = 1200
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 117/262 (44%), Gaps = 39/262 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
V +Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 792 VNQQMISQIMTMLRLFGIPYITAPMEAEAQCAELTSLGLVDGVITDDSDVFLFGASRVFK 851
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L D I L L G DY + + G+G A++L+R+
Sbjct: 852 NMFNQSKT---VECFLLSDLERELGLDRDTLIQLAYLLGSDYTEGLAGVGPVVAMELVRE 908
Query: 202 HGSIE----------------------TILENINRERYQ---IPEDWPYQEARRLFKEPE 236
+ T + ++R++ I +DWP R + P
Sbjct: 909 FPGKDGLWKFKEWWTKVQTGKDGDESNTKFRKMFKKRFKDLYIAQDWPNTAVRDAYYHPT 968
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QGR 289
V + +E KW PD +GL F SE G+ +V + + I NK S QG
Sbjct: 969 VDSSDEPF--KWGLPDLDGLRAFFNSELGWPQSKVDELLLPIIQKMNKRSQTNALNKQGN 1026
Query: 290 LESFF--KPVANTSAPIKRKVY 309
L FF + T AP +R+ Y
Sbjct: 1027 LTDFFGVGGGSGTIAPRQRQAY 1048
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
G V +H+ G R +LL G+KP++VFDG P LK+ L +R K++ A
Sbjct: 38 GLVNAHVLGFLRRIAKLLFYGIKPVFVFDGGAPTLKRATLNERRRKKSGA 87
>gi|402224833|gb|EJU04895.1| hypothetical protein DACRYDRAFT_104789 [Dacryopinax sp. DJM-731 SS1]
Length = 1334
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 120/264 (45%), Gaps = 42/264 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT Q + +L+L G+P AP EAEAQCA L + G V + ++D D FG R +
Sbjct: 968 VTLQMITQIQNMLRLFGIPYTVAPMEAEAQCAELVQLGLVEGIITDDSDVFLFGGLRVFK 1027
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR- 200
++ + S V F ++ + EL+L D+ I L L G DY D + +G A++L+R
Sbjct: 1028 NMFNQSKT---VECFLLSDLGRELSLDRDKLIRLAYLLGSDYVDGLPKVGPVVAMELLRE 1084
Query: 201 -----------------QHGSIE-----TILENINRERYQ---IPEDWPYQEARRLFKEP 235
Q G + T ++RY+ +P DWP R + P
Sbjct: 1085 FPGEDGLHKFKEWWVKVQSGKDKPADNATPFRRKFKKRYKDLYLPVDWPNSNVRDAYSHP 1144
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--------KAAKNKSSQ 287
V DE KW PD + + FL E G+N+ +V + + I KAA+ + Q
Sbjct: 1145 TV--DESTEPFKWGLPDLDAMRVFLRDELGWNASKVDETLLPIIRKVGQRGKAAQ-ANKQ 1201
Query: 288 GRLESFFKPVANTSA--PIKRKVY 309
G L SFF T A P KR+ Y
Sbjct: 1202 GTLTSFFDVSVGTGAYEPRKRQAY 1225
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK+ + +R ++ A + A+ E
Sbjct: 119 GLVNAHVLGFLRRICKLLYYGVKPVFVFDGGAPALKRVTITERKKRKRGAAESHAKLAE 177
>gi|392564416|gb|EIW57594.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 1244
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 39/262 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCAAL G V + ++D D FG R L+
Sbjct: 834 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAALLSFGLVDGIITDDSDVFLFGGGRVLK 893
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L D+ + L L G DY D + G+G A++L+ +
Sbjct: 894 NMFNQSKT---VECFLLSDLERELGLDRDKLVRLAYLLGSDYTDGLPGVGPVVAMELLSE 950
Query: 202 HGSIETILE--------NINRERYQ------------------IPEDWPYQEARRLFKEP 235
+ + + R++ + +P +WP R + P
Sbjct: 951 FPGQDGLHKFRAWWQKVQSGRDKAEESATRFRKRFKKKFKDLYLPGEWPNPAVRDAYYHP 1010
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QG 288
V DE + KW PD + L +F +E G++ +V + I +K S QG
Sbjct: 1011 AV--DESREHFKWGMPDLDALRDFFNAELGWDQIKVDDLLLPIIRKMSKRSQNAAPTMQG 1068
Query: 289 RLESFFK-PVANTSAPIKRKVY 309
L FF PV ++AP KR+ Y
Sbjct: 1069 NLAGFFDLPVGASAAPRKRQAY 1090
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK +A+R +K++ A A+ E
Sbjct: 49 GLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPALKMSTIAERKNKKSGAAASHAKIAE 107
>gi|409048860|gb|EKM58338.1| hypothetical protein PHACADRAFT_193460 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1225
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 113/251 (45%), Gaps = 40/251 (15%)
Query: 93 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 152
+L+L G+P + AP EAEAQCA L G V + ++D D FG R L+++ + S
Sbjct: 848 MLRLFGIPYITAPMEAEAQCAELLALGLVDGIITDDSDVFLFGGARVLKNMFNQSKT--- 904
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI------------- 199
V F ++ + EL L ++ I L L G DY + + G+G A++L+
Sbjct: 905 VECFLLSDLGRELGLEREKLIRLAYLLGSDYTEGLPGVGPVVAMELLTEFSGSDGLHKFR 964
Query: 200 ---RQHGSIETILEN-----------INRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQ 245
R+ S LE+ +E Y +PEDWP R + P V + EE
Sbjct: 965 EWWRKVQSGRDTLEDNKSKFRKRFKKRFKELY-LPEDWPNPTVRDAYYHPTVDSSEEPF- 1022
Query: 246 IKWSAPDEEGLINFLVSENGFNSDR-------VTKAIEKIKAAKNKSSQGRLESFFKPVA 298
KW PD + L F +E G+ ++ V + K A N + QG L +FF
Sbjct: 1023 -KWGLPDLDALRQFFNAELGWAQEKVDDLLLPVIHKMGKRNQAGNTNRQGNLNTFFDVPT 1081
Query: 299 NTSAPIKRKVY 309
AP KR+ Y
Sbjct: 1082 GAGAPRKRQAY 1092
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK+ +++R +K++ A A+ E
Sbjct: 49 GLVNAHVLGFLRRISKLLFYGIKPVFVFDGGAPALKRTTISERKNKKSGAAASHAKVAE 107
>gi|429329613|gb|AFZ81372.1| DNA-repair protein xp-G, putative [Babesia equi]
Length = 839
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 47/275 (17%)
Query: 25 EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV---- 80
+ +KP Y DG ++ KR +DL +A E N +I+ F ++
Sbjct: 460 DKALKPEYSNDGSSEEIYILS-PKRTCIDETNKNDLRDANEVNNLLNIDHFPDSSMHGML 518
Query: 81 ------KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
+ + ++D +++LKL G+P + APSEAE+QCA L +SG YAV ++D D+L F
Sbjct: 519 TCTGNSNIIQDYHDAIQKMLKLFGIPYIVAPSEAESQCAHLNESGACYAVITDDSDALVF 578
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
GA R L++ + + ++ E ++ +L + + + I+ GCDY I+G+G
Sbjct: 579 GANRVLKNFYNSNIFEVYTSE----RLFSQLGIGRQELALIAIICGCDYTTGIKGVGIIN 634
Query: 195 ALKLIRQHGSIETILE----------------------------NIN-RERYQIPEDWPY 225
AL++I+ + + + E +IN R + D+P
Sbjct: 635 ALEIIKAYPTFNDLYEFRKWATSDCDLETAISDPCPLKKAYKEAHINYRIHWTFSSDFPN 694
Query: 226 QEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
EA L P + + ++ W P+ ++ F+
Sbjct: 695 LEAYNLLLHPNITN---EFKLSWVTPNIPAILTFM 726
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 16 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 49
F R LLE G+KPI+VFDG+PP K++ L KR
Sbjct: 55 FFLRICYLLEKGIKPIFVFDGKPPVAKRKTLIKR 88
>gi|67937671|gb|AAY83298.1| unknown [Babesia sp. WA1]
Length = 954
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 52/245 (21%)
Query: 93 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 152
+L L G+P + APSEAEAQC L +SG+VYAV S+D D+L FGA R L++ + +I
Sbjct: 650 MLDLFGIPYMHAPSEAEAQCCFLNQSGEVYAVISDDSDTLPFGARRILKNFFNSRVFEI- 708
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---- 208
+ ++I EL L+ +Q L I+ GCDY D + GIG AL++I+ + + +
Sbjct: 709 ---YLSSRIKSELGLSQEQLALLAIICGCDYTDGVCGIGIVNALEVIKAYPTFNDLYAFR 765
Query: 209 --------LENINRERYQIPE-----------------DWPYQEARRLFKEPEVVTDEEQ 243
L+N ++ I E D+P EA LF +P + +++
Sbjct: 766 AWATTDVDLKNATKDECPIREAYKKAHINYRVHWKFSCDFPNLEAYTLFLKPRI---DKR 822
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIK----------------AAKNKSSQ 287
Q KW+ P + F+ + + +++ + +++ +NK S+
Sbjct: 823 SQFKWTPPQVPEIKQFMTNNSSLPPEQIDACLNELQRRRVFQYLIQDLMPEITCRNKKSK 882
Query: 288 GRLES 292
R ES
Sbjct: 883 SRAES 887
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 16 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR 49
F + LLE ++PI+VFDG PPD K++ L KR
Sbjct: 55 FFLKICYLLETRIRPIFVFDGIPPDAKRRTLLKR 88
>gi|389583279|dbj|GAB66014.1| endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 434
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ + +D L L +P+ ++AE +CA C S + V S+DMD+L FGAP
Sbjct: 264 IKINSKTANDIYNYLSLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDMDALAFGAPNL 322
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R +M+ R I ++L ELN+ +QFID CILSGCDY I GIG A K+I
Sbjct: 323 IRFIMNKKKRHI----INKDELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHKII 378
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 379 KKYKTIETFLESSAFNKYKNSKLFDQKLNGISMSLNDYIVNEFTYEQARKVF 430
>gi|82914773|ref|XP_728841.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485391|gb|EAA20406.1| XPG I-region, putative [Plasmodium yoelii yoelii]
Length = 1274
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 49/299 (16%)
Query: 34 FDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRL 93
F+G D+ K+ + K ++ ++L + + ++ + + ++ N+D K L
Sbjct: 885 FEGISDDMDKETIDKELNENEKKGEELMK--------EYKRLKNNNITINEEMNEDIKLL 936
Query: 94 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 153
L L G+P +++P EAEAQCA L + A+ S+D D + F +++ ++K V
Sbjct: 937 LDLFGIPYIQSPCEAEAQCAYLNNNNYCDAIISDDSDVIVFSGKTIIKNFF---NKKKTV 993
Query: 154 MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI----- 208
+E I +L L D I++ +L GCDY + G+G AL++I+ + E +
Sbjct: 994 EVYEKNLIERKLGLYQDDLINISMLCGCDYTIGVHGVGIVNALEIIKAFPTFEDLKFLKE 1053
Query: 209 -----LENINRERYQ----------------------IPEDWPYQEARRLFKEPEVVTDE 241
L +I +E Y+ P+++P +E FK P+V D
Sbjct: 1054 IVSNPLRHIYQENYENNYSDEIKIFLNSHKNYKLNWIFPKNFPDKEVYNCFKNPKVCKDI 1113
Query: 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKPV 297
+ +I+W P+ +I +L + +++ ++ I N +S Q R+E FF PV
Sbjct: 1114 K--KIEWHVPNMNKIIYYLNKATNISKEKIFNVLDPILKKYNVKVRSYQLRIEDFF-PV 1169
>gi|145341014|ref|XP_001415611.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575834|gb|ABO93903.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 330
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 1/213 (0%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H++ R L A ++ IYVFDG K E A+R R++A GN
Sbjct: 56 HVEYFLNRARTLKRANVRAIYVFDGGRLPGKANEEAQRRRNRSEALAKAKAHARQGNASA 115
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
F R V +T + + L G + AP EA+AQ A L K+G V V +ED D
Sbjct: 116 ANDFYVRAVDITPEMAREVIEALAREGFESLTAPYEADAQMAYLVKNGFVAGVITEDSDL 175
Query: 132 LTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+ G F + D S +I E + L + T D F+++C+LSGCDY S+ G+
Sbjct: 176 IAHGCRSVFTKMAGDGSGIEIRFEELGRNRGLSFVGFTPDMFLEMCVLSGCDYLPSLNGV 235
Query: 191 GGQTALKLIRQHGSIETILENINRERYQIPEDW 223
G + A LIR+ + +L ++ E +P+D+
Sbjct: 236 GVKKAHSLIRRFKTYNKVLRHMKFEGIAVPKDY 268
>gi|409048628|gb|EKM58106.1| hypothetical protein PHACADRAFT_88937 [Phanerochaete carnosa
HHB-10118-sp]
Length = 538
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 11/212 (5%)
Query: 54 ADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE--APSEAEAQ 111
A+ +D A + + + +S+RT T Q D+ K +++ MGVP +E P EAEA
Sbjct: 300 AEDVEDAATVLTQKSTVLFDSYSRRTQPPTTQTYDESKEIIRAMGVPCIEPDGPFEAEAL 359
Query: 112 CAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ 171
A++ GQ VASED D + +GAP +R++ + R P++ + L L ++
Sbjct: 360 AASMVLHGQADYVASEDTDVIVYGAP-LMRNI---AKRSDPLVILNGTDVRAALELDHER 415
Query: 172 FIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE---A 228
F+D +L G D+ I+ +G ALK IR++GSIE +LE R ++P Q+ A
Sbjct: 416 FVDFALLLGTDFSQRIKNVGPTRALKFIREYGSIEQMLEQETRYPPRVPLSLYLQQVEVA 475
Query: 229 RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
R +F V DE LQ K PD+ + L
Sbjct: 476 RVVFHTLPPVPDESALQEK--EPDDTAIQEIL 505
>gi|323450159|gb|EGB06042.1| hypothetical protein AURANDRAFT_29882, partial [Aureococcus
anophagefferens]
Length = 306
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 4 NEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEA 63
G H++ R LL +KP+ VFDG K + A R KR A ++
Sbjct: 47 GAGGASDKHIEFCMGRVALLLHYKVKPLLVFDGGALPAKAAQEASRRGKREHAKAMASQK 106
Query: 64 VEAGNKEDIEKFSKRTVKVT----KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
+ E+ K+ + V VT KQ D C V + AP EA+AQ A L +SG
Sbjct: 107 AREDSHEEARKWYAKCVDVTPVMAKQLVDACAARWGDR-VDFLVAPYEADAQLAQLARSG 165
Query: 120 QVYAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVA----KILEELNLTMDQFID 174
+ A+ SED D+L +G PR L L D S++++ + + A L+ T D F+
Sbjct: 166 EAAAIVSEDSDNLAYGVPRVLFKLDADGSAQQVVLADLFAAGPGVNALDVRGWTQDMFVT 225
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
+C L+GCDY ++++G+G + A +L+ ++ + +L + E P+D+
Sbjct: 226 MCALAGCDYVEAVKGVGIKNAHRLVARYKDRKKVLRALRYECAACPDDY 274
>gi|403413406|emb|CCM00106.1| predicted protein [Fibroporia radiculosa]
Length = 2893
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 118/263 (44%), Gaps = 41/263 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCA L G V + ++D D FG R L+
Sbjct: 2494 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAELLSLGLVDGIITDDSDVFLFGGMRVLK 2553
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR- 200
++ + S V F ++ + EL L D+ I L L G DY D + G+G A++L++
Sbjct: 2554 NMFNQSKT---VECFLLSDLERELGLERDKLIRLAYLLGSDYTDGLPGVGPVVAMELLKE 2610
Query: 201 ---QHG------------SIETILENINR-----------ERYQIPEDWPYQEARRLFKE 234
Q G S + E+ N E Y +P++WP R +
Sbjct: 2611 FPGQDGLHKFKYWWQKVQSGKDTKEDTNSGFRKRFKKRFKELY-LPDEWPNPAVRDAYHH 2669
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--KAAKNKSS-----Q 287
P V DE + KW PD + L NF SE G+ +V + I K K S Q
Sbjct: 2670 PTV--DESEEPFKWGLPDLDALRNFFNSELGWQQAKVDDLLLPIIRKMGKRGQSSVPNKQ 2727
Query: 288 GRLESFF-KPVANTSAPIKRKVY 309
G L F PV AP KR+ Y
Sbjct: 2728 GTLLGLFDAPVGAGHAPRKRQAY 2750
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK+ +A+R K++ A A+ E
Sbjct: 1679 GLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPVLKRATIAERKKKKSGAALSHAKVAE 1737
>gi|84996925|ref|XP_953184.1| endonuclease (xp-g/RAD2 homologue) [Theileria annulata strain
Ankara]
gi|65304180|emb|CAI76559.1| endonuclease (xp-g/RAD2 homologue), putative [Theileria annulata]
Length = 899
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 119/238 (50%), Gaps = 38/238 (15%)
Query: 78 RTVKVTKQH--NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
+V + +H ++ +LL GVP + APSEAE+QCA + +SG+ YAV S+D DSL FG
Sbjct: 578 HSVSLNHKHPYYENIHKLLDHFGVPYIVAPSEAESQCAYMNRSGKCYAVISDDSDSLVFG 637
Query: 136 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 195
A L++ + ++ +++ +I EL + Q + I+ GCDY + ++GIG A
Sbjct: 638 AKCLLKNFYNDKVFEL----YKLDRIRRELGIGRKQLALIAIICGCDYTNGVKGIGIVNA 693
Query: 196 LKLIRQHGSIETI----------------------------LENIN-RERYQIPEDWPYQ 226
L++I+ + + E + L ++N R + D+P +
Sbjct: 694 LEVIKAYPTFEDLYDFRDWATSDLSVKGAVTDECPIRKSYKLAHVNYRVNWTFSPDFPNR 753
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
EA +F P VTD +L+ W PD LI+F+ ++ D+V + + + K++
Sbjct: 754 EAYNMFLNPS-VTDSYKLE--WRPPDVNSLISFMGRKSILPLDQVKECLRMLSLRKSQ 808
>gi|68076257|ref|XP_680048.1| endonuclease [Plasmodium berghei strain ANKA]
gi|56500919|emb|CAI05790.1| endonuclease, putative [Plasmodium berghei]
Length = 390
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ Q +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 220 IKINSQTANDIYNYLLLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 278
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R + + R I + +IL ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 279 IRFITNKKKRHIINKD----EILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ ++Y I ++ Y++AR++F
Sbjct: 335 KKYKTIETFLESSAFDKYSNTKRFNRKLSDVSMSLKDYILNEFTYEQARKIF 386
>gi|395332541|gb|EJF64920.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 1217
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 114/263 (43%), Gaps = 41/263 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCAAL G V + ++D D FG R L+
Sbjct: 801 ITQQMISQIMIMLRLFGIPYITAPMEAEAQCAALLSLGLVDGIITDDSDVFLFGGGRVLK 860
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR- 200
++ + S V F + EL L D+ + L L G DY + + G+G A++L+
Sbjct: 861 NMFNQSKT---VECFLTTDLERELGLDRDKLVRLAYLLGSDYTEGLPGVGPVVAMELLSE 917
Query: 201 -----------------QHG---------SIETILENINRERYQIPEDWPYQEARRLFKE 234
Q G S + ++ Y +PE WP R +
Sbjct: 918 FPGHDGLHKFKQWWMKVQSGRDKAEESASSFRKRFKKKFKDLYLLPE-WPNPAVRDAYYH 976
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------Q 287
P V DE KW PD + L F SE G++ +V + I NK S Q
Sbjct: 977 PTV--DESTEPFKWGFPDLDALRGFFNSELGWDQTKVDDLLLPIIRKMNKRSQNASTNAQ 1034
Query: 288 GRLESFFK-PVANTSAPIKRKVY 309
G L FF P+ +AP KR+ Y
Sbjct: 1035 GNLSGFFDIPLGANAAPRKRQAY 1057
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK +A+R K++ A A E
Sbjct: 23 GLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPALKMATIAERKKKKSGAAASHARVAE 81
>gi|298708646|emb|CBJ26133.1| exonuclease, putative; 92014-93872 [Ectocarpus siliculosus]
Length = 587
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 4/225 (1%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 82
LL G++P+ VFDG +K+ +R +R A A+ AG + + V V
Sbjct: 66 LLHHGIQPVMVFDGASLPIKRSINLERRRQRETARSKGEAALAAGEAGAAAQHFSKAVGV 125
Query: 83 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 142
T + L+ GV +V AP EA+AQ A L ++G V V SED D L +G + L
Sbjct: 126 THDMAFLLMKALRQAGVELVVAPYEADAQLAFLSRTGAVDVVLSEDSDCLPYGCKKVLFK 185
Query: 143 L-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIR 200
+ + ++I + L N F+DLC+L GCDY S++G+G TA KL+
Sbjct: 186 MDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYIPSSVKGLGIATAYKLVD 245
Query: 201 QHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQ 243
+H S++ I+ IN R+ IPE + Y+ AR F+ + E +
Sbjct: 246 RHRSLDKIIGAINSSRFVIPEGYWEQYKRARLTFRHHIIYNPETE 290
>gi|340709477|ref|XP_003393334.1| PREDICTED: flap endonuclease GEN-like [Bombus terrestris]
Length = 725
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+T+ + + +L+ ++ RT LL G+ P++V +G+ P LK + +AKR R+ +
Sbjct: 41 VTDHSAQPKMYLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRSGFRE--K 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G + + ++CK +L+LMG+ V+ EAEA CA L + G V
Sbjct: 99 KTASKGGRTQFNRIL-----------NECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLV 147
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPS-----SRKIPVMEFEVAKILEELNLTMDQFIDLC 176
S+D D +GA R+ + S V E+++ KI L L ++ I L
Sbjct: 148 DGCISQDSDCFLYGAKTVYRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALA 207
Query: 177 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231
+L GCDY D + G+G + A+KL + E ILE + R D Y+EA L
Sbjct: 208 LLCGCDYNDGLNGVGKEAAMKLFKIVND-EDILERMKSWRTDTTLD--YKEAELL 259
>gi|224006438|ref|XP_002292179.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
gi|220971821|gb|EED90154.1| DNA repair enzyme [Thalassiosira pseudonana CCMP1335]
Length = 307
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 41/248 (16%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T + +D LL+L G+P VE+PSEAEAQCAAL + G V V +ED D FG + +
Sbjct: 13 ITDEMKEDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIFVFGGRKVYK 72
Query: 142 HLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+ + +E AK E EL L Q I L +L G DY D ++G+G +++++
Sbjct: 73 NFFNEQQ----YVEAYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVNGMEILQ 128
Query: 201 Q-------HGSIETILENIN--------------------------RERYQIPEDWPYQE 227
H S++ E ++ R R+ P D+P +
Sbjct: 129 AFPIGEDIHASLQKFREWLDGMGDPPSNADGTLSNEMIFHKKHKSARHRWVAPSDFPSRA 188
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSS 286
+++P V D+ + + W+ P+ EGL +F G++ + ++ + + K ++ S
Sbjct: 189 IISAYQKPTV--DKSEARFSWAKPNMEGLRHFCSETLGWDQEETSRIVGPVLKVLESGSK 246
Query: 287 QGRLESFF 294
Q RLES+F
Sbjct: 247 QTRLESYF 254
>gi|307184932|gb|EFN71197.1| Flap endonuclease GEN [Camponotus floridanus]
Length = 738
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 16/193 (8%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+L+ ++ RT LL G+ P++V +G+ P LK + +A+R D E EA K
Sbjct: 51 YLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIARR----NDVRSGFQERKEAAKKGG 106
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+F++ ++CK +LK MG+ V++ EAEA CA L ++G V S+D D
Sbjct: 107 RTQFNRVL--------NECKEMLKFMGIACVQSYGEAEAMCAYLNENGLVDGCVSQDSDC 158
Query: 132 LTFGAPRFLRHLM----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 187
+GA R+ + + + + + KI + LN+ ++ I L +L GCDY + +
Sbjct: 159 FLYGAKIVYRNFCTSKGNNGATAGSIDVYNMEKIEKTLNIGRNKMIVLALLCGCDYSEGV 218
Query: 188 RGIGGQTALKLIR 200
G+G + ALK +
Sbjct: 219 NGVGKEAALKFFK 231
>gi|156096711|ref|XP_001614389.1| endonuclease [Plasmodium vivax Sal-1]
gi|148803263|gb|EDL44662.1| endonuclease, putative [Plasmodium vivax]
Length = 407
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 92/172 (53%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ + +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 237 IKINSKTANDIYNYLFLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 295
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R +M+ R I + ++L ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 296 IRFIMNKKKRHIINKD----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 351
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 352 KKYKTIETFLESSAFNKYKNSKLFNQKLSGISMSLNDYIVNEFTYEQARKVF 403
>gi|452847295|gb|EME49227.1| hypothetical protein DOTSEDRAFT_68105 [Dothistroma septosporum NZE10]
Length = 1395
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 35/243 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 1018 EVTQIMIQECQALLRLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIY 1077
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E + LE E +LT D+ I + L G DY D I GIG TAL++I
Sbjct: 1078 KNMFN----QAKFVECYLTSDLEKEFDLTRDKLIAVAHLLGSDYTDGIPGIGPVTALEII 1133
Query: 200 RQHGSIETILE-----NIN------------RERYQ-------IPEDWPYQEARRLFKEP 235
+ GS+E E +N R++++ +P +P +++P
Sbjct: 1134 SEFGSLEKFKEWWTAVQMNQIPKEADAKIPFRKKFRKNATKLFLPPAFPDARVELAYQQP 1193
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLE 291
+V D Q +W PD L +FL++ G+N +R + I+ + ++ +Q +
Sbjct: 1194 DV--DPTQEAFQWGVPDLAALRSFLMATIGWNEERTDEVLVPVIKDMNRRTDEGTQANIT 1251
Query: 292 SFF 294
+FF
Sbjct: 1252 AFF 1254
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
SH+ G F R +LL G+KP++VFDG P LK+Q + R ++R +D A
Sbjct: 52 NSHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKARREGRREDAA 103
>gi|189202272|ref|XP_001937472.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984571|gb|EDU50059.1| DNA-repair protein rad13 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1222
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 41/289 (14%)
Query: 44 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 103
QEL + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 902 QELTNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMIAECQQLLTLFGLPYIT 956
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL- 162
AP EAEAQCA L G V + ++D D+ FG R +++ + + +E +A+ L
Sbjct: 957 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK----FVECYLAQDLT 1012
Query: 163 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI-------------- 208
E NLT ++ ID+ L G DY I GIG TAL+++ + ++E
Sbjct: 1013 SEFNLTREKMIDIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRTWWDGVQSGQIKK 1072
Query: 209 ---LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 257
+N R++++ +P ++P + PEV +D E Q W PD L
Sbjct: 1073 DEDAKNPFRKKFRKNQGTKLFLPPNFPDPRVTDAYLHPEVDSDPEPFQ--WGVPDLAALR 1130
Query: 258 NFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 302
FL S+ G++ +R + I + + + +Q + FF A
Sbjct: 1131 TFLSSQIGWSWERTDEVLVPVIRDMNRREKEGTQANITRFFDGAVGAGA 1179
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D
Sbjct: 52 NSHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTISNRKSRREGRRED 101
>gi|392589053|gb|EIW78384.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 712
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 6/139 (4%)
Query: 73 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVV--EAPSEAEAQCAALCKSGQVYAVASEDMD 130
E +++RT T + D CK +L+ MGVP V + P EAEA A++ GQ VASED D
Sbjct: 496 ESYTRRTKPPTTETYDQCKEILRAMGVPCVDIQGPYEAEAVAASMVAHGQADYVASEDTD 555
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
L + P LR++ +S+ +P+M E ++ + L L+ +Q++D IL G D+ I+ +
Sbjct: 556 VLVYEVP-LLRNI---ASKDVPLMLLEGLQVRDALQLSDEQYVDFAILLGTDFSQRIKNV 611
Query: 191 GGQTALKLIRQHGSIETIL 209
G AL+ IR++G+IE +L
Sbjct: 612 GPARALRFIRKYGTIEKML 630
>gi|124802099|ref|XP_001347365.1| endonuclease, putative [Plasmodium falciparum 3D7]
gi|23494944|gb|AAN35278.1|AE014830_22 endonuclease, putative [Plasmodium falciparum 3D7]
Length = 388
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ + +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 218 IKINSKTANDIYNYLLLENIPIFITKNDAEKECAIQC-SHERDIVVSDDTDALAFGAPNL 276
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R + + R I E ++L ELN+ +QFID CILSGCDY I GIG A ++I
Sbjct: 277 IRFITNKKKRHIINKE----ELLNELNINYEQFIDFCILSGCDYSAKIPGIGPVKAHEII 332
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 333 KKYKTIETFLESNAFNKYKNSKLFNQKLNGTSMSLNDYILNEFTYEQARKVF 384
>gi|336383338|gb|EGO24487.1| hypothetical protein SERLADRAFT_467880 [Serpula lacrymans var.
lacrymans S7.9]
Length = 413
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 38/261 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q LL+L G+P + AP EAEAQCA L G V + ++D D FG R +
Sbjct: 7 ITQQMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFK 66
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L I L L G DY + + G+G A++L+++
Sbjct: 67 NMFNQSKT---VECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKE 123
Query: 202 -------HGSIETILE-NINRERYQ------------------IPEDWPYQEARRLFKEP 235
H + L+ R++ + +P++WP R + P
Sbjct: 124 FPGEDGLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHP 183
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV-------TKAIEKIKAAKNKSSQG 288
V + EE KW PD + L +FL E G+ +V + + K K A + + QG
Sbjct: 184 TVDSSEEPF--KWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQATSLNRQG 241
Query: 289 RLESFFKPVANTSAPIKRKVY 309
L +F + AP KR+ Y
Sbjct: 242 NLNNFLDVAPGSHAPRKRQAY 262
>gi|241954550|ref|XP_002419996.1| DNA-repair protein RAD2 orthologue, putative; single-stranded DNA
endonuclease, putative [Candida dubliniensis CD36]
gi|223643337|emb|CAX42212.1| DNA-repair protein RAD2 orthologue, putative [Candida dubliniensis
CD36]
Length = 992
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 126/255 (49%), Gaps = 35/255 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 714 QEKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELFKIGLVDGIVTDD 773
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 187
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 774 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 829
Query: 188 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 223
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 830 KGIGPVQAMEILAEFGNLEKFKEWFDKHAKTVADKTELTKLQKSLLDRIKKGKLFLPDSF 889
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAK 282
P + + + PEV +D+ + Q W PD + + +FL+ ++ V + + ++
Sbjct: 890 PDKVVEQAYISPEVDSDKTEFQ--WGVPDLDQIRSFLMYNLSWSQTEVDEVMVPLVQDMN 947
Query: 283 NKSSQGR---LESFF 294
K S+GR L FF
Sbjct: 948 KKKSEGRQSILNEFF 962
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R ++ E +
Sbjct: 52 SSHIIGFFRRICKLLYFGILPIFVFDGGVPVLKKQTINNRRQRREKNSESRQETAQ 107
>gi|123494006|ref|XP_001326419.1| XPG I-region family protein [Trichomonas vaginalis G3]
gi|121909333|gb|EAY14196.1| XPG I-region family protein [Trichomonas vaginalis G3]
Length = 414
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 7/224 (3%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI 72
L + ++ ++ G+KPI +FDGQ K+ KR +R A + + GN +
Sbjct: 56 LPYLMSKVNGIINCGIKPIIIFDGQNLPSKQITTEKRKQEREQALEKARYFEQIGNNAEA 115
Query: 73 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSL 132
K ++ V +T + + L+ V AP EA+AQ L KSG V AV SED D +
Sbjct: 116 FKNYQKAVAITPETVHTWIQELQRNAVEYFVAPYEADAQLVYLAKSGYVDAVLSEDSDLI 175
Query: 133 TFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 192
+ P L D V++ + +L+ + L D F LCIL+GCDY D I +G
Sbjct: 176 AYQCPTTLLKFDDTYH----VLQIDFQNVLKLIGLPADTFTSLCILAGCDYIDHIDKLGP 231
Query: 193 QTALKLIRQHGSIETILENIN-RERYQIPEDW--PYQEARRLFK 233
+TALK ++ +++ + ++ +P+D+ + +A FK
Sbjct: 232 KTALKFLKDKNDPHKVIDMVKLNSKFTVPDDYHSKFDQALTTFK 275
>gi|82704983|ref|XP_726779.1| structure-specific endonuclease [Plasmodium yoelii yoelii 17XNL]
gi|23482332|gb|EAA18344.1| structure-specific endonuclease of the XPG/RAD2 family [Plasmodium
yoelii yoelii]
Length = 390
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ Q +D L L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 220 IKINSQTANDIYNYLLLEKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 278
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R + + R I + +IL EL++ +QFID CILSGCDY I GIG A ++I
Sbjct: 279 IRFITNKKKRHIINKD----EILNELDINYEQFIDFCILSGCDYSAKIPGIGPIKAYEII 334
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ ++Y I ++ Y++AR++F
Sbjct: 335 KKYKTIETFLESSAFDKYSNTKRFNQKLSDVSMSLKDYILNEFTYEQARKIF 386
>gi|221055149|ref|XP_002258713.1| endonuclease [Plasmodium knowlesi strain H]
gi|193808783|emb|CAQ39485.1| endonuclease, putative [Plasmodium knowlesi strain H]
Length = 415
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 24/172 (13%)
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+K+ + +D L +P+ ++AE +CA C S + V S+D D+L FGAP
Sbjct: 245 IKINSKTANDIYNYLSREKIPIFITKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNL 303
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+R +M+ R I ++L ELN++ +QFID CILSGCDY I GIG A +I
Sbjct: 304 IRFIMNKKKRHI----INKDELLNELNISYEQFIDFCILSGCDYSAKIPGIGPVKAHNII 359
Query: 200 RQHGSIETILENINRERYQ-------------------IPEDWPYQEARRLF 232
+++ +IET LE+ +Y+ I ++ Y++AR++F
Sbjct: 360 KKYKTIETFLESSAFNKYKNSKLFNQKLNGISMSLNDYIVNEFTYEQARKVF 411
>gi|209878504|ref|XP_002140693.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209556299|gb|EEA06344.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 496
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE---AVEAGN 68
H+Q R L G+ P+ +FDG P +K+ +R+ KR +A +L + + + N
Sbjct: 55 HIQYCIDRVNLLKSKGIIPVCIFDGAPLPMKRVTEEERHMKRLEAKKELLQLEKSRKCSN 114
Query: 69 KEDIEKFSKRTVKVTKQ-HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASE 127
+I +R + +T + + L G+ + AP EA+AQ + LC++G V AV +E
Sbjct: 115 SYEIRNLCQRALDITPDIAHQVIEELRDHHGIECIVAPYEADAQLSYLCRTGYVDAVITE 174
Query: 128 DMDSLTFGAPRFLRHLMDPSS--RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 185
D D L FG+P + D + R I + + IL + T + F+ C L+GCDY
Sbjct: 175 DSDMLVFGSPCTIYKHDDKTGICRVIYWGDLPRSGILRQNIFTYEMFVLGCTLTGCDYVK 234
Query: 186 SIRGIGGQTALKLIRQ-HGSIETIL 209
S +G+G +TA+KL+++ +G +E I+
Sbjct: 235 SPQGVGIKTAMKLVQEYYGDLERII 259
>gi|308799503|ref|XP_003074532.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
gi|116000703|emb|CAL50383.1| exonuclease, putative; 92014-93872 (ISS) [Ostreococcus tauri]
Length = 1004
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 1/220 (0%)
Query: 5 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
E + T H++ R L +G++ ++VFDG K E A+R R +A D
Sbjct: 49 EGVKTTKHVEYFVNRARGLRRSGVEAVFVFDGGRLPGKAAEEAQRRRNRREALDKAKTHA 108
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
GN + R V VT + + L+ G + AP EA+AQ A L K G V AV
Sbjct: 109 RNGNASAANECYVRAVDVTPEMAREVIEALEREGFECLTAPYEADAQMAYLVKHGFVSAV 168
Query: 125 ASEDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY 183
+ED D + G F + D S +I E + + + T F+++C+LSGCDY
Sbjct: 169 ITEDSDLIAHGCKSVFTKMSPDGSGIEIRFEELGKNRGMSFVGFTPQMFLEMCVLSGCDY 228
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
S+ G+G + A LIR+ + +L ++ E +P+D+
Sbjct: 229 LPSLAGVGLKKAHSLIRRFKTYNKVLRHMKFEGISVPKDY 268
>gi|402222231|gb|EJU02298.1| PIN domain-like protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 342
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 3/218 (1%)
Query: 7 GEVTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
GE T F IRLL ++P VFDG P KK +R RA+A E +
Sbjct: 49 GEKTVKYVDYFMGRIRLLRYHNIEPFVVFDGGPLPAKKGTEEERSKSRAEALAQARELLA 108
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
G + +F + + +T +H + LK V V AP EA+AQ A L +G V+ +
Sbjct: 109 KGKASEAREFYVKALDITPEHAFQVIKALKSEDVQYVVAPYEADAQMAYLENAGHVHGII 168
Query: 126 SEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 184
+ED D L FG L L D +++ K + +F + +LSGCDY
Sbjct: 169 TEDSDLLVFGCKDVLFKLDTDGQCKRVRRSRLTKCKEASFVGWGDKEFRWMAMLSGCDYL 228
Query: 185 DSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPE 221
SI+G+G +TA +L+RQ +++ +L+++ RE + ++P+
Sbjct: 229 PSIQGMGLKTAHRLLRQWKTVDRVLQHVRREGKMKVPK 266
>gi|336370553|gb|EGN98893.1| hypothetical protein SERLA73DRAFT_108084 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1055
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 38/261 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q LL+L G+P + AP EAEAQCA L G V + ++D D FG R +
Sbjct: 739 ITQQMISQIMLLLRLFGIPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGQRVFK 798
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L I L L G DY + + G+G A++L+++
Sbjct: 799 NMFNQSKT---VECFLLSDLGRELGLERGTLIRLAYLLGSDYVEGLSGVGPVVAMELLKE 855
Query: 202 HGSIETILE--------NINRERYQ------------------IPEDWPYQEARRLFKEP 235
+ + + R++ + +P++WP R + P
Sbjct: 856 FPGEDGLHKFKDWWLKVQSGRDKDEENKSKFRKRFKKKYKDLYLPQEWPNAAVRDAYYHP 915
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV-------TKAIEKIKAAKNKSSQG 288
V + EE KW PD + L +FL E G+ +V + + K K A + + QG
Sbjct: 916 TVDSSEEPF--KWGLPDLDALRDFLREELGWGQSKVDDLLLPIIQKMNKRKQATSLNRQG 973
Query: 289 RLESFFKPVANTSAPIKRKVY 309
L +F + AP KR+ Y
Sbjct: 974 NLNNFLDVAPGSHAPRKRQAY 994
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
V +H+ G R +LL G++P++VFDG P LK+ +++R K++ A
Sbjct: 51 VNAHVLGFLRRICKLLFYGIRPVFVFDGGAPALKRNTISERKKKKSGA 98
>gi|350420439|ref|XP_003492509.1| PREDICTED: flap endonuclease GEN-like [Bombus impatiens]
Length = 724
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 18/204 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+T+ + + +L+ ++ RT LL G+ P++V +G+ P LK + +AKR R+ +
Sbjct: 41 VTDHSAQPKMYLRNLYFRTAFLLMQGISPVFVLEGKAPTLKHKTIAKRNDVRSGFRE--K 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G + + ++CK +L+LMG+ V+ EAEA CA L + G V
Sbjct: 99 KTASKGGRTQFNRIL-----------NECKEMLQLMGLACVQGHGEAEAMCAYLNEDGLV 147
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPS-----SRKIPVMEFEVAKILEELNLTMDQFIDLC 176
S+D D +GA R+ + S V E+++ KI L L ++ I L
Sbjct: 148 DGCISQDSDCFLYGAKVVYRNFCTSTQGNRGSSGGAVDEYKLEKIERLLELGRNKMIALA 207
Query: 177 ILSGCDYCDSIRGIGGQTALKLIR 200
+L GCDY D + G+G + A+KL +
Sbjct: 208 LLCGCDYNDGLNGVGKEAAMKLFK 231
>gi|297845884|ref|XP_002890823.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
gi|297336665|gb|EFH67082.1| hypothetical protein ARALYDRAFT_473168 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 129/269 (47%), Gaps = 25/269 (9%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA---GN 68
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E GN
Sbjct: 55 HIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSRK---ENLARALEHEANGN 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + V ++ + ++L+ V V AP EA+AQ L + QV A+ +ED
Sbjct: 112 SSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMTFLAITKQVDAIITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDY 183
D + FG PR + MD + EF+ +K+ + +L++ F +++CILSGCDY
Sbjct: 172 SDLIPFGCPRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDE 241
S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 228 LQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPN 287
Query: 242 EQLQIKWS--------APDEEGLINFLVS 262
+ I S D E LI+FL S
Sbjct: 288 TEDIIHLSDISDYLGEDSDFENLIDFLTS 316
>gi|320586182|gb|EFW98861.1| DNA excision repair protein rad2 [Grosmannia clavigera kw1407]
Length = 1287
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 120/254 (47%), Gaps = 37/254 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT +C+ LL+L G+P + AP EAEAQC+ L G V + ++D D+ FG R
Sbjct: 901 EVTMVMVSECQALLRLFGIPYITAPMEAEAQCSELVSLGLVDGIVTDDSDTFLFGGTRVY 960
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL-- 198
+++ + + V F A + +E++L+ ++ I L L G DY D + G+G TA+++
Sbjct: 961 KNMFNGNKF---VECFLAADLEKEMSLSREKLISLAQLLGSDYTDGLPGVGPVTAMEILS 1017
Query: 199 -----------------IRQHG-SIETILENINRERYQ--------IPEDWPYQEARRLF 232
++ HG S E + R +++ +P +P +
Sbjct: 1018 EFPGPQGLEEFRTWWDDVQMHGRSREADAGSPFRRKFRKSQGTKLFLPTGFPNAAVAAAY 1077
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQG 288
K+PEV + E Q W PD +GL +FL+S G++ DR + + + N+ +Q
Sbjct: 1078 KKPEVDSSTEPFQ--WGVPDLDGLRSFLMSTIGWSQDRTDEVLVPVIRDMNRREAEGTQS 1135
Query: 289 RLESFFKPVANTSA 302
+ FF + A
Sbjct: 1136 NITRFFSGAVGSGA 1149
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+ P++VFDG P LK+ L
Sbjct: 52 NSHVVGFFRRVCKLLWFGILPVFVFDGGAPALKRSTL 88
>gi|440491647|gb|ELQ74269.1| 5'-3' exonuclease [Trachipleistophora hominis]
Length = 441
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 16 MFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74
+F + +R+++ G P+ VFDG+ K +R KR +A + GN + +
Sbjct: 58 IFLKRVRVIQKYGAVPVVVFDGESLPSKHVVNERRRMKREEARTMAELQMSKGNVREAMR 117
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
+ ++ ++ + L+ GV V+ +P E++AQ A L + V+++ +ED D + +
Sbjct: 118 YIACSISISPHMVAQIAQFLRDNGVEVIVSPYESDAQLAYLQRINYVHSIITEDSDLIVY 177
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
L + VM +E D +D+ ILSGCDY +++RG+G +
Sbjct: 178 KCNNVLYKYGNGY-----VMHYERGAFRTANEFVCDNLLDVSILSGCDYLENVRGVGISS 232
Query: 195 ALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTD 240
A+K++R++GS+E ++ + R R +PED+ + AR FK +VV D
Sbjct: 233 AVKMMRRYGSVELVINEMRRTR-SVPEDYLSCFVRARLTFKY-QVVYD 278
>gi|68486229|ref|XP_709963.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
gi|68486286|ref|XP_713000.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434429|gb|EAK93839.1| hypothetical protein CaO19.8904 [Candida albicans SC5314]
gi|46434462|gb|EAK93871.1| hypothetical protein CaO19.1324 [Candida albicans SC5314]
Length = 990
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 111/218 (50%), Gaps = 31/218 (14%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTETMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 187
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 188 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 223
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSF 887
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLV 261
P + + + PEV +D+ + Q W PD + + +FL+
Sbjct: 888 PDKVVEQAYMSPEVDSDKTEFQ--WGVPDLDQIRSFLM 923
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R
Sbjct: 52 SSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRR 95
>gi|358375820|dbj|GAA92396.1| DNA excision repair protein Rad2 [Aspergillus kawachii IFO 4308]
Length = 1135
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P V AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 804 ECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 863
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 864 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLEE 919
Query: 208 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N+ + + +P +P + EPEV +D
Sbjct: 920 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 979
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
Q W PD GL +FL+S G++ +R + I + + + +Q + SFF
Sbjct: 980 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITSFF 1031
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|389749913|gb|EIM91084.1| PIN domain-like protein [Stereum hirsutum FP-91666 SS1]
Length = 1350
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 40/252 (15%)
Query: 93 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 152
+L+L G+P + AP EAEAQCA L + G V + ++D D FG R +++ + S
Sbjct: 913 MLRLFGIPYITAPMEAEAQCATLVQLGLVEGIITDDSDVFLFGGLRVFKNMFNQSKT--- 969
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-HG--SIETIL 209
V F ++ + EL L ++ + L L G DY + + G+G A++L+++ HG ++
Sbjct: 970 VECFLLSDLARELGLERNKLVQLAYLLGSDYTEGLPGVGPVVAMELLKEFHGDDALSDFR 1029
Query: 210 E-----NINRERYQ------------------IPEDWPYQEARRLFKEPEVVTDEEQLQI 246
E R+R + +P+DWP + + P V D+ +
Sbjct: 1030 EWWVKVQSGRDRPEESKSKFKKRFKKRFKDLYLPDDWPNAAVKEAYYHPTV--DDSEEPF 1087
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-------SSQGRLESFFKPVA- 298
KW PD +GL + E G++S +V + + I NK + QG L FF
Sbjct: 1088 KWGLPDLDGLRSLFQDELGWSSSKVEELLLPIIQKMNKRGQVQALNRQGNLNEFFDVSGG 1147
Query: 299 -NTSAPIKRKVY 309
++AP K++ Y
Sbjct: 1148 MGSAAPRKKQAY 1159
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
V +HL G R +LL G+KP++VFDG P LK+ +++R K++ A
Sbjct: 51 VNAHLVGFLRRICKLLFYGIKPVFVFDGGAPALKRATISERKKKKSGA 98
>gi|238881502|gb|EEQ45140.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 990
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 35/255 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E +K + + +VT+ +D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 712 QEKFQKAKRDSDEVTEAMINDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIVTDD 771
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA-KILEELNLTMDQFIDLCILSGCDYCDSI 187
D FG + +++ D +EF + + ++ LT + I+L +L G DY + I
Sbjct: 772 SDCFLFGGDKIYKNMFDQKQ----YVEFYLQDDLFNKMALTQHKLIELALLLGSDYTEGI 827
Query: 188 RGIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDW 223
+GIG A++++ + G++E ++L+ I + + +P+ +
Sbjct: 828 KGIGPVQAMEILAEFGNLEKFKEWFDKHTKSVADKTELTKLQKSLLDRIKKGKLYLPDSF 887
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 279
P + + + PEV +D+ + Q W PD + + +FL+ + V + ++ +
Sbjct: 888 PDKVVEQAYISPEVDSDKTEFQ--WGVPDLDQIRSFLMYNLSWTQTEVDEVMVPLVQDMN 945
Query: 280 AAKNKSSQGRLESFF 294
K + Q + FF
Sbjct: 946 KKKLEGRQSTISEFF 960
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
+SH+ G F R +LL G+ PI+VFDG P LKKQ + R +R ++ E +
Sbjct: 52 SSHIIGFFRRICKLLYFGILPIFVFDGGVPALKKQTINNRKQRREKNSESRQETAQ 107
>gi|145546103|ref|XP_001458735.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426556|emb|CAK91338.1| unnamed protein product [Paramecium tetraurelia]
Length = 872
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 41/260 (15%)
Query: 84 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL 143
+Q +D ++LL L G+P + AP EAEAQCA L ++G V V +ED D FGA + L+
Sbjct: 559 QQKFEDIRQLLALFGIPWIIAPGEAEAQCAYLQQNGLVDCVITEDSDVFLFGATKVLKGF 618
Query: 144 MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 203
+ K ++ ++ I E+L L DQ I L + G DY I+G+G A++++
Sbjct: 619 FES---KTSLVYYDTQYIKEDLGLNRDQLIYLALFLGSDYTLGIKGVGIVNAMEIVEVFD 675
Query: 204 SIE-------------TILENIN--------RER------------YQIPEDWPYQEARR 230
++E +LEN + +ER +++P D+P E
Sbjct: 676 NVEALKRFTSWASKADVLLENASSHYENIPEKERIYKEFHKNYKKYWELPSDFPNIEVIN 735
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAK--NKSSQG 288
+ +P V DE Q W P E +I F + ++ +RV + I KI K K Q
Sbjct: 736 GYMKPRV--DESLEQFTWGQPAVEKIIEFCSQQLRYSQERVEETI-KIPFQKIIQKEDQK 792
Query: 289 RLESFFKPVANTSAPIKRKV 308
++ FF+ + + R++
Sbjct: 793 KITDFFRVTSKIAIINSRRI 812
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
HL G+ R + LLE G+KP++VFDG P+LK+Q L KR +R +L + E
Sbjct: 53 HLIGILKRIMFLLENGIKPVFVFDGPAPELKRQTLIKRAQQRQQYNINLQKLAE 106
>gi|392561830|gb|EIW55011.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 320
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 105/220 (47%), Gaps = 11/220 (5%)
Query: 21 IRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 79
+RLL G+ P VFDG P K+ A+R +R + G ++ +
Sbjct: 63 VRLLRHHGITPYLVFDGGPLPAKQGTEAERKQRRDENLARANALAAQGKHSQAREYYVKC 122
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
V VT Q + L+ GVP V AP EA+AQ A L + G V + +ED D L FG
Sbjct: 123 VDVTPQMAYQLIKALRAEGVPYVVAPYEADAQLAYLERIGAVDGIITEDSDLLVFGCKNV 182
Query: 140 LRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGCDYCDSIRGIGG 192
L L +S + + A I L + + QF + ILSGCDY SI GIG
Sbjct: 183 LFKLDHAASTVTCIARKDFAAIASTAAGGLSLVGWSDAQFRTMAILSGCDYLPSIPGIGL 242
Query: 193 QTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 231
+TA L+R+H ++E L + E + +IP+ Y +A RL
Sbjct: 243 KTAWTLLRKHKTVENTLSALRLEGKKKIPQG--YLDAFRL 280
>gi|403361276|gb|EJY80337.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Oxytricha
trifallax]
Length = 714
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED-IEKFSKRTVKVTKQ 85
G+ PI VFDG +KK+ +R R D+ + + + G++ I KF + V++
Sbjct: 73 GITPIMVFDGARLPMKKRIEEQRKKAREDSRNLAEDLLAKGDQHQAIRKFME-AVEINSL 131
Query: 86 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMD 145
++L+ M V V AP EA+AQ A L K+G+V + +ED D L +G R L MD
Sbjct: 132 MIYRLTQVLETMNVQFVVAPYEADAQLAHLFKTGKVDLIITEDSDLLVYGVTRVL-FKMD 190
Query: 146 PSSRKIPVMEFEVAKILEELN---------------LTMDQFIDLCILSGCDYCDSIRGI 190
P + I + L LN D + CIL+GCDYC+S++G+
Sbjct: 191 PQGQGIYI-------DLNNLNQCDAFKMPQSNGGKVFDYDLLLKTCILNGCDYCESLKGV 243
Query: 191 GGQTALKLIRQH-GSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIK 247
G +TALKL++++ G I I+E++ + I +++ +Q A FK +VV D E + K
Sbjct: 244 GFKTALKLMKEYNGDIRQIVESLRGKNIPIRQNYMQDFQRAELTFKY-QVVFDMENKKQK 302
Query: 248 W 248
+
Sbjct: 303 Y 303
>gi|70953099|ref|XP_745672.1| DNA repair endonuclease [Plasmodium chabaudi chabaudi]
gi|56526070|emb|CAH76802.1| DNA repair endonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 1281
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 74 KFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLT 133
+ + + ++ N+D K LL G+P +++P EAEAQC+ L + A+ S+D D +
Sbjct: 945 RLKNTNITINEEMNEDIKLLLNFFGIPYIQSPCEAEAQCSYLNNNNYCDAIISDDSDVIV 1004
Query: 134 FGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQ 193
F +++ ++K V +E I +L L D I++ +L GCDY + GIG
Sbjct: 1005 FSGKTIIKNFF---NKKKTVEVYEKNLIERKLGLYQDDLINISMLCGCDYTVGVHGIGIV 1061
Query: 194 TALKLIRQHGS------IETILENINRERYQ--------------------------IPE 221
AL++++ + ++ I+ N R YQ P+
Sbjct: 1062 NALEVVKAFPTFDDLKILKEIVSNPLRHLYQENDENNYSDEIKHFLNTHKNYKLNWIFPK 1121
Query: 222 DWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAA 281
++P +E + FK P+V D ++ + W P+ +I++L + +++ ++ I
Sbjct: 1122 NFPDREVYKCFKYPKVCKDIKKFE--WHPPNMNNIIHYLNKTTNISEEKIFNVLDPILKK 1179
Query: 282 KN---KSSQGRLESFFKPV 297
N +S Q R+E FF PV
Sbjct: 1180 YNVKVRSYQLRIEDFF-PV 1197
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
HL F R +LL ++PI++FDG PP+LKK+ + +R KR + + + + E
Sbjct: 81 HLYFFFLRICKLLYYNIRPIFIFDGTPPELKKRTIFQRNLKRKNNEEKVKKTAE 134
>gi|346973852|gb|EGY17304.1| DNA-repair protein rad13 [Verticillium dahliae VdLs.17]
Length = 1187
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 19/236 (8%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 882 EVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 941
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S K+ V + + + +EL+L+ +Q + + +L G DY D + G+G TA++++
Sbjct: 942 KNMFN--SNKL-VECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILS 998
Query: 201 QHGSIETILENI----------NRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSA 250
+ E L + +P +P R + +PEV E Q W
Sbjct: 999 EFPESEGGLAAFCDWWADFRKSQATKLFLPVGFPNPAVREAYMKPEVDDSPETFQ--WGV 1056
Query: 251 PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFKPVANTSA 302
P+ EGL +L++ G++ +R + + + N+ +Q + +F+ T A
Sbjct: 1057 PNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRRDVEGTQSNITRYFEGSIGTGA 1112
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G++P++VFDG P LK+Q + R +R DD
Sbjct: 52 NSHVVGFFRRICKLLWFGIRPVFVFDGGAPALKRQTIQGRKRRREGRRDD 101
>gi|393242077|gb|EJD49596.1| hypothetical protein AURDEDRAFT_182745 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 111/263 (42%), Gaps = 40/263 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q LL+L G+P + AP EAEAQCA L G V V ++D D FG+ R +
Sbjct: 880 ITQQMISQIMVLLRLFGIPYITAPMEAEAQCATLVALGLVEGVITDDSDVFLFGSARVFK 939
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR- 200
++ + S V F + EL L D+ I L L G DY D + G+G A++++
Sbjct: 940 NMFNQSKT---VECFIAGDLTRELGLDRDKLIRLAYLLGSDYVDGLPGVGPVVAMEILEE 996
Query: 201 -----------------QHG--------SIETILENINRERYQIPEDWPYQEARRLFKEP 235
Q G S + + +DWP R + P
Sbjct: 997 FPGADGLHKFREWWVKVQSGKDKPEDNQSAFRKRFKKKFKSLHLEDDWPNAVVRDAYYHP 1056
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-------KAAKNKSSQG 288
V DE KW PD + L +FL E G+ D+V + I + + + QG
Sbjct: 1057 TV--DESDEPFKWGLPDLDALQHFLGQELGWGQDKVDDLLLPIIHRMGQRGQSASVTKQG 1114
Query: 289 RLESFFKPV--ANTSAPIKRKVY 309
L S+F A T AP K++ Y
Sbjct: 1115 TLTSYFDVSVGAGTYAPRKKQAY 1137
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA 54
V +H+ G R +LL G+KP++VFDG P +KK + +R +++
Sbjct: 51 VNAHILGFLRRICKLLFYGIKPVFVFDGGAPAIKKATITERKKRKS 96
>gi|196004776|ref|XP_002112255.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
gi|190586154|gb|EDV26222.1| hypothetical protein TRIADDRAFT_23638 [Trichoplax adhaerens]
Length = 247
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 10/203 (4%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
+HL G+F R +LL ++P++VFDG P LKKQ + SK D L E + +E
Sbjct: 53 AHLLGLFYRLCKLLFFKIRPVFVFDGGVPLLKKQTI----SKLVDVQRSLEEQQTSLIQE 108
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
++ + V+ + +C+ LL L G+P + +P EAEAQCA L + Q ++D D
Sbjct: 109 H-KRQERMAASVSNEMYSECQELLSLFGIPYIVSPMEAEAQCAVLDFTNQTDGTITDDSD 167
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEF-EVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
FG R++ R+ + EF + +I + L + I L L G DY D I+
Sbjct: 168 IFLFGGRNIYRYVF----RESKLAEFYDSQRIQRLMGLDRKKMITLAYLLGSDYTDGIKN 223
Query: 190 IGGQTALKLIRQHGSIETILENI 212
+G A++L+ G T L+ I
Sbjct: 224 VGIVMAMELLSTFGDDLTGLQKI 246
>gi|350632743|gb|EHA21110.1| hypothetical protein ASPNIDRAFT_45646 [Aspergillus niger ATCC 1015]
Length = 1130
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 802 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 861
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 862 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 917
Query: 208 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N+ + + +P +P + EPEV +D
Sbjct: 918 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 977
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 978 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 1029
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|312375261|gb|EFR22667.1| hypothetical protein AND_14372 [Anopheles darlingi]
Length = 738
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYS-----------KRADATDDLA 61
++ +F RT LL+ G+ P++V +G P LK + KR D A
Sbjct: 43 VKNLFFRTCYLLQTGITPVFVLEGAAPPLKYGVIVKRNQLQFRGARPKKVANCDKAGATA 102
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
AVE + + E+ R V KQ C+ LL MG+ V+AP EAEA CA L + +
Sbjct: 103 TAVEKASSKPTEQKRNRFHHVLKQ----CEELLSAMGLVCVQAPGEAEALCAYLNRDALI 158
Query: 122 YAVASEDMDSLTFGAPRFLRHLM-DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
V S+D D +GA R R+ + + V + E A L L ++ + + +LSG
Sbjct: 159 DGVISQDSDCFAYGAVRVFRNFCASQNGGSVDVYDLERANS-AGLRLGQEKIVAMALLSG 217
Query: 181 CDYCDS-IRGIGGQTALKLIRQHGSIETILENINRER 216
CDYC + + G+G + +L+ + + ETIL+ I R
Sbjct: 218 CDYCPAGVAGVGREMVTRLLNCYDN-ETILQRIRSWR 253
>gi|317028500|ref|XP_001390185.2| single-stranded DNA endonuclease [Aspergillus niger CBS 513.88]
Length = 1100
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 772 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 831
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 832 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 887
Query: 208 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N+ + + +P +P + EPEV +D
Sbjct: 888 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 947
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 948 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 999
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G++P++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIQPVFVFDGGAPVLKRQTIA 89
>gi|157134745|ref|XP_001656421.1| hypothetical protein AaeL_AAEL000425 [Aedes aegypti]
gi|108884298|gb|EAT48523.1| AAEL000425-PA [Aedes aegypti]
Length = 744
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR-------YSKRADATDDLAEAV 64
+L+ +F RT LL+ G+ P++V +G P LK + KR R A D A
Sbjct: 51 YLRNLFFRTYYLLQIGIIPVFVLEGSAPPLKYGVIIKRNQTQFRGVPPRKTANCDKAGGT 110
Query: 65 EAGN----KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+ N K E+ R V KQ C+ LL MG+ V+AP EAEA CA L G
Sbjct: 111 QKPNGTESKAPSEQKRNRFHHVLKQ----CEELLSSMGLVCVQAPGEAEALCAYLNHDGM 166
Query: 121 VYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
VY V S+D D +GA R R+ S V +++ KI ++L ++ + + ILSG
Sbjct: 167 VYGVISQDSDCFAYGAVRVFRNFCASQSGGGSVDVYDMDKIRMVMDLGQEKIVAMGILSG 226
Query: 181 CDYCDS-IRGIGGQTALKLIRQHGSIETI 208
CDY + + G+G + +L+ + S + +
Sbjct: 227 CDYSPAGVPGVGREMINRLLNIYHSRDVL 255
>gi|224014124|ref|XP_002296725.1| exonuclease 1 [Thalassiosira pseudonana CCMP1335]
gi|220968580|gb|EED86926.1| exonuclease 1 [Thalassiosira pseudonana CCMP1335]
Length = 334
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 6/222 (2%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
GM+ + V DG KK+E ++R ++R A + A +G+ ++ ++ VT +
Sbjct: 81 GMEILLVIDGDALPSKKEENSQRRAERDSAFEKAMTAEASGDSRAARRYYAQSCSVTHKI 140
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPR--FLRHLM 144
+ + KL+G+ + AP EA+AQ A L +G V V +ED D L +G PR F
Sbjct: 141 RYELMKACKLVGIAFIVAPYEADAQMARLAHTGVVDLVITEDSDILVYGCPRACFKIDFD 200
Query: 145 DPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 203
++I +M+ + L N T D F+ +CI+SGCDYC + GIG + A K++R H
Sbjct: 201 TCQGQEIQLMKNLGENESLSFKNWTHDMFVFMCIISGCDYCKGLPGIGIKLAHKIVRVHR 260
Query: 204 SIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQ 243
+ I + R ++P D+ + A R F+ V Q
Sbjct: 261 TPSKIFSAL-RGAGRMPTDFEEKFWIAFRTFRHQRVFCPSRQ 301
>gi|134057863|emb|CAK38230.1| unnamed protein product [Aspergillus niger]
Length = 916
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 588 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDVFLFGGTRVYKNMFNQSK 647
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E + LE E +L + I L L G DY + I GIG TAL+++ + G++E
Sbjct: 648 ----FVECYLTTDLEKEYSLFRTKLIRLAHLLGSDYTEGIPGIGPVTALEILTEFGTLED 703
Query: 208 ILE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N+ + + +P +P + EPEV +D
Sbjct: 704 FRDWWTQVQTGLNMGNDSHATFYKKFKKHATKIFLPPSFPDPRVDAAYLEPEVDSDPSPF 763
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294
Q W PD GL +FL+S G++ +R + + + N+ +Q + SFF
Sbjct: 764 Q--WGVPDLHGLRDFLMSTIGWSQERTDEVLVPVIRDMNRRDQEGTQSNITSFF 815
>gi|302674926|ref|XP_003027147.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
gi|300100833|gb|EFI92244.1| hypothetical protein SCHCODRAFT_70854 [Schizophyllum commune H4-8]
Length = 1139
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 112/262 (42%), Gaps = 39/262 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT+Q +L+L G+P + AP EAEAQCA L V V ++D D FGA R +
Sbjct: 758 VTQQMVAQIMIMLRLFGIPYMTAPMEAEAQCATLVSLNLVDGVITDDSDVFLFGAARVFK 817
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F A + EL L I L L G DY + + G+G A++L+R+
Sbjct: 818 NMFNQSKT---VECFLAADLQRELGLDRGVLIRLAYLLGSDYTEGLPGVGPVMAMELLRE 874
Query: 202 ---HGSIETILENINRERY----------------------QIPEDWPYQEARRLFKEPE 236
+E E R + +P DWP R + P
Sbjct: 875 FPGEDGLERFREWWGRVQMGRDGEESNTPFRRRFKKKFKDLYLPPDWPNGAVRDAYLHPT 934
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKA-------AKNKSSQGR 289
V DE + KW PD +GL F E G++ +V + + I + A+ + QG
Sbjct: 935 V--DESEEPFKWGLPDLDGLREFFNGELGWSQHKVDEILLPIISKMGKRGQAQTTNKQGT 992
Query: 290 LESFFKPV--ANTSAPIKRKVY 309
L SF T AP KR+ Y
Sbjct: 993 LNSFLDVSLGTGTHAPRKRQAY 1014
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATD 58
V +H+ G R +LL G+KP++VFDG P LK+ L +R ++ DAT+
Sbjct: 51 VNAHVLGFLRRITKLLFYGIKPVFVFDGGAPALKRNTLNQRRERKTDATE 100
>gi|392577150|gb|EIW70280.1| hypothetical protein TREMEDRAFT_43853 [Tremella mesenterica DSM
1558]
Length = 361
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 4/220 (1%)
Query: 7 GEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G+ T+ +RLL+ G+ P VFDG P KK R RA+
Sbjct: 49 GKKTTKFVDYAMHRVRLLKHHGITPFIVFDGGPLPAKKGTEVSRAKSRAEYLARAQSMES 108
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
G ++ + + V +T + + L+ G+ V AP EA+AQ L + G V +
Sbjct: 109 QGRWKEARECYTKCVDITPEMAYQLIKALRAEGIEYVVAPYEADAQLCFLEREGWVDGII 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGCDY 183
+ED D L FG + + L D + + + + +A I T F + +LSGCDY
Sbjct: 169 TEDSDLLVFGCKQVVFKL-DHNGQCVWIHRERLASIRDFPMHGWTDHHFRRMAMLSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
DSI+GIG +TA +L+R+H ++E +L+N+ + +P+D+
Sbjct: 228 LDSIQGIGIKTAHRLLRKHKTVEKVLQNVRLDGMNVPKDY 267
>gi|429963370|gb|ELA42914.1| hypothetical protein VICG_00229 [Vittaforma corneae ATCC 50505]
Length = 358
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 32/249 (12%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL + LL+ G+ PI+VFDG + KK+ + +R R ++ ++ +
Sbjct: 55 HLDLFMAKLSGLLDYGITPIFVFDGDFLESKKKTIQERKQLREKYRAEVDFFLQRNDVPR 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ KR V VT + R+LK + + +P EA+AQ L + + + +ED D
Sbjct: 115 ARELMKRCVSVTPEILHSILRVLKANNIEFIVSPYEADAQLYFLQRIKYIDYILTEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDYCDS 186
+ +GA R L + V E++ A+ L+L D++ +D+CILSGCDY DS
Sbjct: 175 VVYGATRILY-----KYDGVHVEEYDSAR----LHLCKDKYFQENILDICILSGCDYLDS 225
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW------------------PYQEA 228
IRGIG TA + +++ G +++ + ++ + +P+++ PY
Sbjct: 226 IRGIGIVTAYEKLKELGDVDSFVNSMISLKKNVPKEYISDFVKAKATFLHHIVYNPYTMQ 285
Query: 229 RRLFKEPEV 237
R+ EP++
Sbjct: 286 RQFLSEPKI 294
>gi|426199083|gb|EKV49008.1| hypothetical protein AGABI2DRAFT_217997 [Agaricus bisporus var.
bisporus H97]
Length = 1160
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 35/235 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 781 ITQQMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYK 840
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L D + L L G DY D + G+G A++L+++
Sbjct: 841 NMFNQSKT---VELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKE 897
Query: 202 HGSIETIL-----------------ENINRERYQ---------IPEDWPYQEARRLFKEP 235
+ E + E+ + R Q +P DWP R + P
Sbjct: 898 FPNKEGLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHP 957
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSS 286
V + EE KW PD + L F E G+ +V + I+K+ +N +S
Sbjct: 958 AVDSSEEPF--KWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRRRNNAS 1010
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
G V +H+ G R +LL G+KP++VFDG P +K+ L++R K++ A
Sbjct: 49 GLVNAHVLGFLRRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGA 98
>gi|322712027|gb|EFZ03600.1| XPG domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 1191
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L K G V + ++D D+ FG R
Sbjct: 872 EVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVKLGIVDGIVTDDSDTFLFGGTRVY 931
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E + K LE EL+L+ DQ I L L G DY + + G+G TA++++
Sbjct: 932 KNMFNSNK----FVECYIGKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEIL 987
Query: 200 RQHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARR 230
+ ++ LEN R++++ +P +P
Sbjct: 988 SEFPG-KSGLENFREWWTSVQSQSRPKEADAASPFRKKFRKTQATKLFLPPGFPNPAVHE 1046
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
+ PEV E Q W PD EGL FL++ G++ +R + + + NK
Sbjct: 1047 AYLHPEVDDSAEPFQ--WGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNK 1098
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 43
SH+ G F R +LL G++P++VFDG P LK+
Sbjct: 52 NSHVVGFFRRICKLLWFGIQPVFVFDGGAPALKR 85
>gi|390600384|gb|EIN09779.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 1103
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 114/264 (43%), Gaps = 40/264 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
++T Q +L+L G+P + AP EAEAQCA L + G V + ++D D FG R L
Sbjct: 722 EITHQMVAQIMTMLRLFGIPYITAPMEAEAQCATLNELGLVDGIITDDSDVFLFGGKRVL 781
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S V F + + EL L D I L L G DY + + G+G A++L++
Sbjct: 782 KNMFNQSKT---VECFLLPDLARELGLDRDTLIRLAYLLGSDYTEGLPGVGPVVAMELLK 838
Query: 201 QHGSIETILE--------NINRER-------------------YQIPEDWPYQEARRLFK 233
+ + + + + R+R + +DWP R +
Sbjct: 839 EFQGEDGLHKFKDWWRKVQMGRDREADTSTKFRKRFKKRFKDVLHLNDDWPNGAVRDAYY 898
Query: 234 EPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK-------AIEKIKAAKNKSS 286
P V DE + KW PD + L FL E G+ +V + + K A ++
Sbjct: 899 HPTV--DESEEPFKWGLPDLDALRGFLYDELGWGQTKVDELLLPIIHKVTKRGQAAARNQ 956
Query: 287 QGRLESFFKPVANTS-APIKRKVY 309
QG L F S AP KR+ Y
Sbjct: 957 QGTLNEFLDISGTGSHAPRKRQAY 980
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
G V +H+ G R +L+ G+KP++VFDG P LK+ L +R +K+ A
Sbjct: 49 GLVNAHVVGFLRRICKLMYYGIKPVFVFDGGAPALKRSTLTERKNKKNGA 98
>gi|389642679|ref|XP_003718972.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|351641525|gb|EHA49388.1| DNA-repair protein rad13 [Magnaporthe oryzae 70-15]
gi|440472732|gb|ELQ41574.1| DNA-repair protein rad13 [Magnaporthe oryzae Y34]
gi|440485125|gb|ELQ65111.1| DNA-repair protein rad13 [Magnaporthe oryzae P131]
Length = 1269
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 38/238 (15%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P V AP EAEAQCA L + G V + ++D D+ FG R +++ + +
Sbjct: 916 ECQQLLRLFGIPYVTAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVYKNMFNGNK 975
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E +A LE EL+L+ + I L L G DY D + G+G TA++++ + +
Sbjct: 976 ----FVECYLASDLEKELSLSQENLISLAQLLGSDYTDGLPGVGPVTAVEILSEFPGPDG 1031
Query: 208 ILE------------NINRERYQ---------------IPEDWPYQEARRLFKEPEVVTD 240
+ N++ + + +P +P + +PEV +D
Sbjct: 1032 LSRFADWWRQVQSSLNVSTDGWSSFLRKFRKSQATRLFLPPGFPSPAVPEAYLKPEVDSD 1091
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
E Q W APD GL +FL++ G++ +R + I I + + +Q + FF
Sbjct: 1092 PEPFQ--WGAPDLSGLRDFLMATIGWSQERTDEVLVPVIRDINRRELEGTQSNITRFF 1147
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 52 NSHVIGFFRRICKLLWFGIKPVFVFDGGAPVLKRATL 88
>gi|19113794|ref|NP_592882.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175380|sp|Q09708.1|YAGG_SCHPO RecName: Full=Uncharacterized protein C12G12.16c
gi|929887|emb|CAA90586.1| Fen1 family nuclease, XP-G family (predicted) [Schizosaccharomyces
pombe]
Length = 496
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 6/200 (3%)
Query: 40 DLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGV 99
DL+ L + K D+L +A++ E ++K +R + + Q+ + +LK++G+
Sbjct: 232 DLECLTLCLKIIKGILTLDELQKAIKLKQTE-LDKLERRLYRPSPQNIFEIFEILKILGI 290
Query: 100 PVVEAP--SEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 157
P +P EAEA +A+ ++ YAVA++D D L G+ L + +P+ +
Sbjct: 291 PASFSPIGVEAEAFASAISQNNLAYAVATQDTDVLLLGSSMISNFLDLNDNFHLPLQIMD 350
Query: 158 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN-RER 216
KI +ELNLT D F D C++ G D+ I IG ALKLIR +G+ +L+ +N E+
Sbjct: 351 PRKIAQELNLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFDVLKALNVEEK 410
Query: 217 YQIPEDW--PYQEARRLFKE 234
Y IP D+ + A++LF +
Sbjct: 411 YIIPTDYIKKFLTAKKLFTD 430
>gi|444315221|ref|XP_004178268.1| hypothetical protein TBLA_0A09650 [Tetrapisispora blattae CBS 6284]
gi|387511307|emb|CCH58749.1| hypothetical protein TBLA_0A09650 [Tetrapisispora blattae CBS 6284]
Length = 751
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 5/216 (2%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+LQ + L ++P VFDG +KK KR +KR D+ + AG K +
Sbjct: 55 YLQFFIKKFSMLRTFNIEPYLVFDGDSLPVKKNTEKKRRTKRDDSKEIAIRLWNAGEKRN 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ +++V +T + K + + AP EA++Q L K G V + SED D
Sbjct: 115 AMDYFQKSVSITPEMAKCIIDYCKNNHIRYIVAPFEADSQMVYLEKKGIVQGIISEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCDYCDSIR 188
L FG R + L D + I + + K+ + LT + I + LSGCDY D I
Sbjct: 175 LIFGCQRLITKLND-YAECIEICSLDFGKLTVKFPLGKLTPLEMIAMVCLSGCDYTDGIP 233
Query: 189 GIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 223
IG A+KLI+QH S++ IL N+ R ++ IPE++
Sbjct: 234 KIGLVNAMKLIQQHHSMDRILLNLRRAGKHNIPENF 269
>gi|409077739|gb|EKM78104.1| hypothetical protein AGABI1DRAFT_61094 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1128
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 35/235 (14%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCA L G V V ++D D FGA R +
Sbjct: 749 ITQQMISQIMTMLRLFGIPYITAPMEAEAQCAELVSLGLVDGVITDDSDVFLFGAQRVYK 808
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L D + L L G DY D + G+G A++L+++
Sbjct: 809 NMFNQSKT---VELFLLSDLERELGLDRDTLVRLAYLLGSDYTDGLSGVGPVVAMELLKE 865
Query: 202 HGSIETIL-----------------ENINRERYQ---------IPEDWPYQEARRLFKEP 235
+ E + E+ + R Q +P DWP R + P
Sbjct: 866 FPNKEGLHRFADWWRRVQEGKDKEEESNTKTRRQFKKKFKDLYLPSDWPNPAVRDAYYHP 925
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSS 286
V + EE KW PD + L F E G+ +V + I+K+ +N +S
Sbjct: 926 AVDSSEEPF--KWGLPDLDALRAFFNQELGWGQTKVDELLLPIIQKMNRRRNNAS 978
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
G V +H+ G R +LL G+KP++VFDG P +K+ L++R K++ A
Sbjct: 49 GLVNAHVLGFLRRITKLLFYGIKPVFVFDGGAPVIKRATLSERKKKKSGA 98
>gi|398403715|ref|XP_003853324.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
gi|339473206|gb|EGP88300.1| hypothetical protein MYCGRDRAFT_109224 [Zymoseptoria tritici IPO323]
Length = 1324
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L K G V + ++D D FG R +++ +
Sbjct: 977 ECQALLRLFGLPYITAPMEAEAQCAELVKLGLVDGIVTDDSDCFLFGGTRIYKNMFN--- 1033
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E + LE E +LT + I + L G DY + + G+G TAL++I + GS++
Sbjct: 1034 -QAKFVECYLTSDLEKEFDLTRGKLISVAHLLGSDYTEGLPGVGPVTALEIISEFGSLDN 1092
Query: 208 I--------LENI----------------NRERYQIPEDWPYQEARRLFKEPEVVTDEEQ 243
+ I N + +P +P ++EPEV +D +
Sbjct: 1093 FKTWWSGVQMNQIPKSEDADKPFRKKFRRNATKIFLPPSFPDARVDIAYQEPEVDSDAQA 1152
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294
Q W PD + L +FL++ G++ +R + + + N+ +Q + +FF
Sbjct: 1153 FQ--WGVPDLDALRSFLMATIGWSQERTDEVLVPVIKDMNRRLDEGTQANITAFF 1205
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R +D
Sbjct: 52 NSHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSRREGKRED 101
>gi|397601505|gb|EJK57927.1| hypothetical protein THAOC_21987, partial [Thalassiosira oceanica]
Length = 268
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 41/235 (17%)
Query: 96 LMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155
L G+P VE+PSEAEAQCAAL + G V V +ED D FG + ++ D V
Sbjct: 1 LCGIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF---VEA 57
Query: 156 FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-----------HGS 204
+ I EL L D+ + L +L G DY D +RG+G ++++R HG
Sbjct: 58 YYARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEGVHGG 117
Query: 205 IETI---LENIN---------------------RERYQIPEDWPYQEARRLFKEPEVVTD 240
+ ++ IN R R+ P D+P + + +P V D
Sbjct: 118 LSRFRDWMDGINDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLKPAV--D 175
Query: 241 EEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ W+ PD + L F G+ + + + + K ++ S+Q RLES+F
Sbjct: 176 TSGTRFTWARPDLDALQRFCADSLGWEREETARVVGPVLKVLESTSTQTRLESYF 230
>gi|330917946|ref|XP_003298025.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
gi|311328997|gb|EFQ93872.1| hypothetical protein PTT_08606 [Pyrenophora teres f. teres 0-1]
Length = 1293
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 134/289 (46%), Gaps = 41/289 (14%)
Query: 44 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 103
QEL + R D ++L + + A K+D + +VT+ +C++LL L G+P V
Sbjct: 904 QELTNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMIAECQQLLTLFGLPYVT 958
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKIL- 162
AP EAEAQCA L G V + ++D D+ FG R +++ + + +E +A+ L
Sbjct: 959 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAK----FVECYLAQDLA 1014
Query: 163 EELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI-------------- 208
E +LT ++ I + L G DY I GIG TAL+++ + ++E
Sbjct: 1015 SEFSLTREKMIAIAQLLGSDYTTGIPGIGPVTALEILSEFQTLEAFRAWWDGVQSGQIRK 1074
Query: 209 ---LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 257
+N R+R++ +P ++P + PEV +D E Q W PD L
Sbjct: 1075 DEDAKNPFRKRFRKNQGTKLFLPPNFPDPRVAEAYLHPEVDSDPEPFQ--WGVPDLASLR 1132
Query: 258 NFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPVANTSA 302
FL S+ G++ ++ + I + + + +Q + FF+ A
Sbjct: 1133 TFLSSQIGWSWEKTDEVLVPVIRDMNRREKEGTQANITRFFEGAVGAGA 1181
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D
Sbjct: 52 NSHIVGFFRRICKLLFIGIKPVFVFDGGAPALKRQTISNRKSRREGRRED 101
>gi|342878276|gb|EGU79631.1| hypothetical protein FOXB_09914 [Fusarium oxysporum Fo5176]
Length = 1260
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 902 EVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 961
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S K V + V I +EL+L+ +Q I L L G DY + + G+G TA++++
Sbjct: 962 KNMFN--SNKF-VECYLVGDIEKELSLSREQLISLAHLLGSDYTEGLPGVGPVTAVEILS 1018
Query: 201 QHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARRL 231
+ ++ LEN R++++ +P +P
Sbjct: 1019 EFPG-KSGLENFREWWRSVQSQTRPKDADVSTPFRKKFRKSQGTKLFLPPGFPNPAVYDA 1077
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ PEV E Q W PD EGL FL++ G++ +R + + + NK +Q
Sbjct: 1078 YLHPEVDDSNENFQ--WGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKRDREGTQ 1135
Query: 288 GRLESFF 294
+ FF
Sbjct: 1136 SNITRFF 1142
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G++P++VFDG P LK+Q +
Sbjct: 52 NSHVVGFFRRICKLLWFGIQPVFVFDGGAPILKRQTI 88
>gi|407917461|gb|EKG10769.1| DNA repair protein [Macrophomina phaseolina MS6]
Length = 730
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 5/301 (1%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+ R L+ G+KP VFDG K+ +R +KR ++ E ++ G
Sbjct: 55 HIDYCMHRVRMLIHFGIKPYLVFDGDHLPGKEVTNKERAAKRKESKRVGMELLKLGKTSQ 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
++ V VT + LK++ V V AP EA++Q L K G + + SED D
Sbjct: 115 AHLELQKAVDVTPEMARMFIEELKMLNVDYVVAPYEADSQMVYLEKRGIIQGIVSEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSS-RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
L FGA + L + I +F K + + T DQF + ILSGCDY SI +
Sbjct: 175 LVFGAKCLITKLDNYGECVVINRADFTACKEISLVGWTDDQFRQMAILSGCDYLPSISKM 234
Query: 191 GGQTALKLIRQHGSIETILENINRE-RYQIPEDWP--YQEARRLFKEPEVVTDEEQLQIK 247
G TA +L+R++ +++ +L I + ++++P +P + +A F V + +
Sbjct: 235 GLMTAYRLLRKYKTVDRLLRQIQFDGKFKMPAGYPEAFAQAEMTFLYQWVFCPAAKQLVH 294
Query: 248 WSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSAPIKRK 307
++ PD + + L+ + ++ I + N +L F+P+ AP+ RK
Sbjct: 295 FTDPDPDVEVEKLLYIGRYMEPKIAAGIARGDLHPNTKRPIQLPQSFRPI-KLPAPVSRK 353
Query: 308 V 308
+
Sbjct: 354 I 354
>gi|408388533|gb|EKJ68217.1| hypothetical protein FPSE_11684 [Fusarium pseudograminearum CS3096]
Length = 1224
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 50/293 (17%)
Query: 46 LAKRYSKRADATDDLAEAVEAGNKEDIE-----------KFSKRTVKVTKQHNDDCKRLL 94
LA+ + A +L NKED E K + +VT+ +C+ LL
Sbjct: 847 LAEESEEHARFASELNNKTAEQNKEDYERELRALRTQQKKDRRDADEVTQVMITECQALL 906
Query: 95 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVM 154
+L G+P V AP EAEAQCA L G V + ++D D+ FG R +++ + S K V
Sbjct: 907 RLFGIPYVTAPMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFN--SNKF-VE 963
Query: 155 EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN- 213
+ V+ I +EL+LT +Q I L L G DY + + G+G TA++++ + + L N
Sbjct: 964 CYLVSDIEKELSLTREQLISLAHLLGSDYTEGLPGVGPVTAVEILSEFPG-RSGLNNFRE 1022
Query: 214 --------------------RERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQ 245
R++++ +P +P + PEV E Q
Sbjct: 1023 WWKSVQSQTRPKDADVSTPFRKKFRKSQGTKLFLPPSFPSPAVNDAYLHPEVDDSNEDFQ 1082
Query: 246 IKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294
W PD EGL FL++ G++ +R + + + NK +Q + FF
Sbjct: 1083 --WGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKRDREGTQSNITRFF 1133
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+ P++VFDG P LK+Q + R +R +D
Sbjct: 52 NSHVVGFFRRICKLLWFGILPVFVFDGGAPVLKRQTIQHRKQRREGRRED 101
>gi|328792793|ref|XP_001120033.2| PREDICTED: flap endonuclease GEN-like [Apis mellifera]
Length = 713
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 18/194 (9%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+L+ ++ RTI LL G+ P++V +G+ P LK +AKR R+ + K+
Sbjct: 51 YLRNLYFRTIFLLMQGILPVFVLEGKAPALKYNTIAKRNDIRSGFQE----------KKS 100
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
I+K + K ++CK +L+ MG+ V+ EAEA CA L + G V S+D D
Sbjct: 101 IQKKGRTQFKKIL---NECKEMLEYMGLACVQGHGEAEAMCAYLNEDGLVDGCISQDSDC 157
Query: 132 LTFGAPRFLRHLMDPSSRKI-----PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
+GA R+ + V E+ + KI + L L ++ I L +L GCDY D
Sbjct: 158 FLYGAKVVYRNFCTSAQGNRGGTGGAVDEYRLEKIEKVLQLGRNKMIVLALLCGCDYDDG 217
Query: 187 IRGIGGQTALKLIR 200
+ G+G + A+KL +
Sbjct: 218 LNGVGKEAAMKLFK 231
>gi|403375999|gb|EJY87977.1| Exonuclease 1 [Oxytricha trifallax]
Length = 835
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 9/207 (4%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE-DIEKFSKRTVK 81
LL AG+KPI +FDG +K +R + R +A E GN + KFS+ +V
Sbjct: 66 LLNAGVKPIIIFDGCRLIMKGNTENERRNNRLEARIKAEEYQREGNYAMAMRKFSE-SVD 124
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T + + ++LK + AP EA+AQ A + G+ + +ED D L FG + L
Sbjct: 125 ITPEMAFEFIQVLKQADIEYYVAPYEADAQLAYMYLKGKAQVIITEDSDLLIFGVKKVL- 183
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLT---MDQFIDLCILSGCDYCDSIRGIGGQTALKL 198
MD + I + + E + ELN T D + CILSGCDY +SI+GIG + A KL
Sbjct: 184 FKMDKAGNGIEI-DLENLNDVTELNFTKFNQDMLLTCCILSGCDYLESIKGIGFKKAHKL 242
Query: 199 IRQHG-SIETILENINRE-RYQIPEDW 223
+ G +++ IL+ + RE + IP+D+
Sbjct: 243 VYDEGDNVQGILKRVRREGKMLIPQDY 269
>gi|344305257|gb|EGW35489.1| hypothetical protein SPAPADRAFT_69718 [Spathaspora passalidarum
NRRL Y-27907]
Length = 980
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 124/254 (48%), Gaps = 33/254 (12%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ +D + LL+ G+P + AP EAEAQCA L K G V + ++D
Sbjct: 701 QEKLQKAKRDSDEVTETMINDVQELLRRFGIPYITAPMEAEAQCAELLKIGLVDGIITDD 760
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D L FG +++ + +K V + I ++ L+ D+ I+L +L G DY + I+
Sbjct: 761 SDCLLFGGDHVYKNMFN---QKQYVECYIKDDIEAKVGLSRDKLIELALLLGSDYTEGIK 817
Query: 189 GIGGQTALKLIRQHGSIE------------------------TILENINRERYQIPEDWP 224
GIG A++++ + S+E ++L I + +P+ +P
Sbjct: 818 GIGPVLAMEILAEFESLEGFKDWFDDNTKTVKSNNDLNALRKSLLTRIKNGKLYLPDSFP 877
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKA 280
+ R + PEV D ++ + KW P+ + + +FL+ ++ +RV + I +
Sbjct: 878 DEAVSRAYLYPEV--DSDKTEFKWGVPNLDQIRSFLMFNVDWSQERVDEVMIPLIRDMNR 935
Query: 281 AKNKSSQGRLESFF 294
K +Q + FF
Sbjct: 936 KKADGTQSTIGEFF 949
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+SH+ G F R +LL G+ PI+VFDG P LK++ + R ++R
Sbjct: 52 SSHIIGFFRRICKLLYFGILPIFVFDGGVPVLKRETINARKNRR 95
>gi|403373775|gb|EJY86812.1| Exonuclease 1, putative [Oxytricha trifallax]
Length = 1007
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 18 TRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFS 76
T+ I +L+ + P+ VFDG ++KK R R E ++ GN + K
Sbjct: 60 TKRINMLKNHNVTPVMVFDGGKLNMKKSTEEVRQKTREKNYKKFQEYMKKGNMDKAIKKY 119
Query: 77 KRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGA 136
++ +T Q ++LK V + AP EA+AQ A L G V V +ED D L FG
Sbjct: 120 GESIDITPQMAHVLIQVLKAQEVEYIVAPYEADAQLAFLWHKGHVQVVFTEDSDLLAFGV 179
Query: 137 PR-FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 195
+ F + D +I + + + K + T D + CILSGCDY DSI+GIG A
Sbjct: 180 KKVFFKMDSDGFGIEIDLDKLQTIKKPDFTMFTQDMLLTTCILSGCDYLDSIKGIGFMKA 239
Query: 196 LKLIRQHGSIET---ILENINRE-RYQIPEDW--PYQEARRLFK 233
KL+++ G ++T +L + E + IP+D+ Y++A FK
Sbjct: 240 QKLVQESGPVDTFHDVLGYLKDEGKSVIPDDYEEDYKKAFLTFK 283
>gi|340923811|gb|EGS18714.1| putative DNA repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1238
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 35/225 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 875 EVTQVMISECQTLLQLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 934
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL-- 198
+++ + S++ + + ++I EL+L+ +Q I L +L G DY + + G+G TAL++
Sbjct: 935 KNVFN-SNKYVEC--YLASEIESELSLSREQLISLALLLGSDYTEGLPGVGPVTALEILS 991
Query: 199 -------------------IRQHG---------SIETILENINRERYQIPEDWPYQEARR 230
++Q G T + + +P WP
Sbjct: 992 HFPPGDKQALIQFAEWWTDVQQRGRPASADASSPWRTKFRRAHATKLFLPPGWPSPAVWD 1051
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
+ PEV + E Q W PD EGL FL+ G+ ++ + +
Sbjct: 1052 AYLSPEVDSSPEPFQ--WGVPDVEGLRRFLMGTVGWGKEKTDEVL 1094
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SHL G F R +LL G+KP++VFDG P LK+ L
Sbjct: 52 NSHLVGFFRRICKLLWYGVKPVFVFDGGAPALKRATL 88
>gi|149237300|ref|XP_001524527.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452062|gb|EDK46318.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1129
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 122/245 (49%), Gaps = 30/245 (12%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 850 QEKLQKAKRDSDEVTETMIYDVQELLKRFGIPFITAPMEAEAQCAELLKIGLVDGIVTDD 909
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG + +++ + +K V + I ++ L+ D I+L +L G DY + I+
Sbjct: 910 SDCFLFGGDKVYKNMFN---QKQFVECYFKDDIATKIGLSQDNLIELALLLGSDYTEGIK 966
Query: 189 GIGGQTALKLIRQHGSI------------------------ETILENINRERYQIPEDWP 224
G+G A++++ + GS+ + +L + + +P+++P
Sbjct: 967 GVGPVLAMEILAEFGSLNKFKEWFDRHTKTAEVKSNLTSLEKNLLSKVKSGKLYLPDNFP 1026
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAKN 283
+ +K PEV D ++ W P+ + + +FL+ G++ +RV + I ++
Sbjct: 1027 DRIVFEAYKRPEV--DPDKTDFVWGVPNLDQIRSFLMYNVGWSQERVDEVMIPLVRDLNK 1084
Query: 284 KSSQG 288
KS++G
Sbjct: 1085 KSAEG 1089
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR---ADATDDLAEAVEA 66
+SH+ G F R +LL G++PI+VFDG P LKKQ +A+R ++R A++T + A+ + A
Sbjct: 52 SSHIVGFFRRICKLLFFGIRPIFVFDGGVPVLKKQTIAERKNRRQQKAESTRETAQKLLA 111
>gi|396082436|gb|AFN84045.1| exonuclease 1 [Encephalitozoon romaleae SJ-2008]
Length = 366
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 33/295 (11%)
Query: 16 MFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74
MF +++LE+ G+ PI V DG K++ KRY K+ + + + E +
Sbjct: 58 MFEEKVKVLESYGITPIIVLDGDTLSSKEETNRKRYIKKDKNRKEAEHWLVKNDPEKAKG 117
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
F ++ + VTK+ D R+L+ + V + +P E++AQ L + G + + +ED D + +
Sbjct: 118 FMRQCIAVTKEIVSDIARMLERINVEYIISPYESDAQLCYLERIGYIDCILTEDSDLIPY 177
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQ-FIDLCILSGCDYCDSIRGIGGQ 193
G+ R L + V EF + E ++ +D+ ILSGCDY SI+G+G
Sbjct: 178 GSNRILYKFDNTF-----VQEFTRGCLSEARGRDFEENILDISILSGCDYLASIQGVGVV 232
Query: 194 TALKLIRQHGSIETILENINRERYQIPEDW------------------PYQEARRLFKEP 235
TA KL+ + ++E ++E + + R IP+++ P Q+ RR ++
Sbjct: 233 TAHKLLSKEKTVEKVVEYL-QHRKAIPDNYLDDFFKAKKTFLHQIVYDPIQQKRRYLRDV 291
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEK--IKAAKNKSSQG 288
+E+L + +EE I E F S R T+AI++ I A+ + S+
Sbjct: 292 -----KEKLDFLGTLKEEEYRIEDGPLELFFKSSRRTRAIKRHFIPVARKRRSEA 341
>gi|169596320|ref|XP_001791584.1| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
gi|160701280|gb|EAT92412.2| hypothetical protein SNOG_00917 [Phaeosphaeria nodorum SN15]
Length = 1279
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 36/245 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL L G+P + AP EAEAQCA L G V + ++D D+ FG R
Sbjct: 920 EVTQSMITECQHLLTLFGLPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVY 979
Query: 141 RHLMDPSSRKIPVMEFEVAK-ILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E +A ++ E +LT D+ I + L G DY I GIG TAL+L+
Sbjct: 980 KNMFNAAK----FVECYLANDLVSEFSLTRDKMIAIAQLLGSDYTTGIPGIGPVTALELL 1035
Query: 200 RQHGSIE------------TILENIN-----RERYQ--------IPEDWPYQEARRLFKE 234
+ ++ TI ++ + R R++ +P +P Q +
Sbjct: 1036 AEFPDLQDFKDWWTGVQNNTIPKDADKNSAFRRRFRRGQATKLFLPPGFPDQRVADAYLH 1095
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRL 290
PEV +D E Q W PD L FL S+ G++ +R + I + + + +Q +
Sbjct: 1096 PEVDSDPEPFQ--WGVPDLAALRTFLSSQIGWSWERTDEVLVPVIRDMNRREKEGTQANI 1153
Query: 291 ESFFK 295
FF+
Sbjct: 1154 TRFFE 1158
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R +D
Sbjct: 52 NSHIVGFFRRVCKLLFIGIKPVFVFDGGAPVLKRQTINNRKSRREGRRED 101
>gi|258577255|ref|XP_002542809.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
gi|237903075|gb|EEP77476.1| hypothetical protein UREG_02325 [Uncinocarpus reesii 1704]
Length = 1143
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 139/288 (48%), Gaps = 38/288 (13%)
Query: 48 KRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSE 107
K ++ ADA D + + A K+D + +V+ +C++LLKL G+P + AP E
Sbjct: 782 KSQAENADAFDRELKQLRAQQKKD----RRDADEVSHIMVTECQQLLKLFGLPYITAPME 837
Query: 108 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 167
AEAQCA L G V + ++D D+ FG R +++ + + V + V+ + +E +L
Sbjct: 838 AEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNQAKF---VECYLVSDLEKEYSL 894
Query: 168 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE-------------TILENIN- 213
+ I L G DY + I GIG TAL+++ + +E +I ++++
Sbjct: 895 DRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFSDLEDFKDWWSQVQMGVSIPDDVHS 954
Query: 214 --RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSEN 264
R++++ +P +P + + EPEV +D Q W PD E L +FL++
Sbjct: 955 KFRKKFKKNAAKLFLPPAFPDRRVDAAYLEPEVDSDPSAFQ--WGVPDLEALRHFLMTAV 1012
Query: 265 GFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--ANTSAPIKR 306
G++ +R + I + + + +Q + FF+ A AP +R
Sbjct: 1013 GWSPERTDEVLVPVIRDVNRRELEGTQANITQFFEGSQGAGAFAPQRR 1060
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPTLKRQTIA 89
>gi|449019441|dbj|BAM82843.1| probable excision repair protein ERCC5 [Cyanidioschyzon merolae
strain 10D]
Length = 1117
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT+Q D KRLL+L+G+P +EA EAEAQCA L ++G V AV +ED D+ FGA R R
Sbjct: 763 VTEQMFADTKRLLQLLGIPYIEAAMEAEAQCAFLDRAGIVDAVVTEDSDAFLFGASRVYR 822
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
H+ + S V E+E+ +I + L+ D+ I L +L G DY D + G+G A +++
Sbjct: 823 HIFEDSKY---VEEYEMNRIERNMGLSRDKLICLGLLLGSDYSDGVYGVGIVNATEIV 877
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK 42
+HL G+F R +LL G++ ++VFDG P LK
Sbjct: 54 AHLLGIFRRCCKLLYYGIEAVFVFDGGVPSLK 85
>gi|403340704|gb|EJY69645.1| XPG family protein [Oxytricha trifallax]
Length = 666
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 20/234 (8%)
Query: 15 GMFTRTIRLLE----AGMKPIYVFDGQPPDLKKQ-ELAKRYSKRADATDDLAEAVEAGNK 69
G + I++L+ G+KPI VFDG P D K + E ++ SK+ + L A E G
Sbjct: 23 GFLSYPIKMLKLVQYYGIKPICVFDGMPLDAKMETEQGRKDSKKTNKDLALRFARE-GKV 81
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
E+ +K R++++ + D +LK++ + ++AP EA+AQ A L + G SED
Sbjct: 82 EEAKKHFMRSLQLRSKMIDLLMDVLKVLDIEFIKAPYEADAQIAYLVREGIADIAISEDS 141
Query: 130 DSLTFGAPRFLRHL----------MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
D + FG PR L L D + + + + K L++ N QF+ +CI+
Sbjct: 142 DLIAFGCPRLLMKLDFRGICQVFDADDFIQNNKITDASL-KFLQKAN--RKQFVSICIMG 198
Query: 180 GCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFK 233
GCDY SI+ +G + A+K ++H +IE ++E + R ++ P+ L K
Sbjct: 199 GCDYLPSIQKVGLKIAVKFFQKHETIEKVIEAM-RANSTYTQNVPFNYVEALLK 251
>gi|159124202|gb|EDP49320.1| DNA excision repair protein Rad2 [Aspergillus fumigatus A1163]
Length = 1130
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 794 EVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 853
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + V + + + +E L + I L L G DY + I GIG TAL+++
Sbjct: 854 KNMFNQGKF---VECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALEILT 910
Query: 201 QHGSIETILE---NINRERYQ-------------------IPEDWPYQEARRLFKEPEVV 238
+ S+E + I Y IP +P + + + EPEV
Sbjct: 911 EFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNPQVDKAYLEPEVD 970
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 294
+D Q W PD GL NFL++ G++ +R + I + + + +Q + +FF
Sbjct: 971 SDPSPFQ--WGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRREQEGTQSNITNFF 1028
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|383854420|ref|XP_003702719.1| PREDICTED: flap endonuclease GEN-like [Megachile rotundata]
Length = 717
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 18/204 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+T+ + +L+ ++ RT LL ++P++V +G+ PDLK +AKR + R +
Sbjct: 41 VTDNHAQPKMYLRNLYFRTAFLLMHEIQPVFVLEGKAPDLKHNAIAKRNNIRNGFRE--R 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ G + + + K +CK LL MG+ ++ EAEA CA L + G V
Sbjct: 99 KTAGKGRRPQLNRILK-----------ECKELLGYMGLACIQGQGEAEAMCAHLNEDGLV 147
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKI-----PVMEFEVAKILEELNLTMDQFIDLC 176
+ S+D D +GA R+ + V E+ + KI + L+L ++ I L
Sbjct: 148 HGCISQDSDCFLYGAKVVYRNFCTSAQGNRGGTGGAVDEYSIEKIEKALDLGRNKMIALA 207
Query: 177 ILSGCDYCDSIRGIGGQTALKLIR 200
+L GCDY + + G+G + A+KL +
Sbjct: 208 LLCGCDYDEGLNGVGKEAAMKLFK 231
>gi|320033898|gb|EFW15844.1| DNA excision repair protein [Coccidioides posadasii str. Silveira]
Length = 1143
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 819 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 878
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 206
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 879 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 934
Query: 207 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 935 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 994
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
Q W PD E L FL+S G++S+R + I + + + +Q + FF
Sbjct: 995 Q--WGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNRRELEGTQANITQFF 1046
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHVVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|451852103|gb|EMD65398.1| hypothetical protein COCSADRAFT_114116, partial [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 39/281 (13%)
Query: 44 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 103
QEL+ + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 905 QELSNNTAARVDFDEELKQ-LRAQQKKD----RRDADEVTQTMISECQQLLALFGLPYIT 959
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 163
AP EAEAQCA L G V + ++D D+ FG R +++ + + V + + +
Sbjct: 960 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAKF---VECYLSSDLTS 1016
Query: 164 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR---------------QHGSIETI 208
E +LT + ID+ L G DY + I GIG TAL+++ Q+GSI+
Sbjct: 1017 EFSLTRQKLIDIAQLLGSDYTEGIPGIGPVTALEILSEFQDLTAFRKWWDGVQNGSIKKS 1076
Query: 209 --LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 258
++ R R++ +P +P + PEV + E Q W PD L
Sbjct: 1077 DDAQSSFRRRFRKNQATKLFLPASFPDPRVADAYLNPEVDSSPEPFQ--WGVPDLAALRA 1134
Query: 259 FLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
+L S+ G++++R + I + + + +Q + FF+
Sbjct: 1135 YLSSQIGWSTERTDEVLVPVIRDMNRREKEGTQANITRFFE 1175
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R DD
Sbjct: 52 NSHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTIRHRKSRREGRRDD 101
>gi|156355443|ref|XP_001623677.1| predicted protein [Nematostella vectensis]
gi|156210399|gb|EDO31577.1| predicted protein [Nematostella vectensis]
Length = 306
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 5 EAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEA 63
E + T ++ + R +L +KP+ VFDG P +E +R S+ + + LA
Sbjct: 48 EGKKTTVYINYVLKRINMMLFHDVKPVLVFDGAYLPSKANKEAERRKSRNENKANGLA-F 106
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 123
+ AGN+ ++ ++ V ++ + ++ + GV + AP EA+AQ A L K + A
Sbjct: 107 LRAGNRAKAQECFQKCVDISPDMALEVIKMCRSKGVDCIVAPYEADAQLAYLMKKNIIQA 166
Query: 124 VASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNLTMDQFIDLCILSGC 181
V SED D L +G + + MD S V ++++ L+ T+++F +CILSGC
Sbjct: 167 VISEDSDLLVYGCKKVMFK-MDASGYGTLVSLDHLSELTNLKMHEFTLEKFRHMCILSGC 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIE------TILENINR-ERYQIPEDW 223
DY SI+GIG A KL+R +I T++ N+ ++Y++P D+
Sbjct: 226 DYLPSIKGIGLIKANKLLRNSSNINKACINLTLVRNLRMDDQYRVPVDY 274
>gi|303310363|ref|XP_003065194.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
gi|240104854|gb|EER23049.1| XPG N-terminal domain containing protein [Coccidioides posadasii C735
delta SOWgp]
Length = 1143
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 819 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 878
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 206
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 879 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 934
Query: 207 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 935 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 994
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
Q W PD E L FL+S G++S+R + I + + + +Q + FF
Sbjct: 995 Q--WGVPDLEALRQFLMSTVGWSSERTDEVLVPVIRDVNRRELEGTQANITQFF 1046
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHVVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|212540874|ref|XP_002150592.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
gi|210067891|gb|EEA21983.1| DNA excision repair protein Rad2 [Talaromyces marneffei ATCC 18224]
Length = 1127
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 32/224 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 829 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 888
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I G+G TAL++I + ++E
Sbjct: 889 ----FVECFLSNDLEKEYALDRVKLIQFAHLLGSDYTEGIPGVGPVTALEIITEFNNLEE 944
Query: 208 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 243
+ + + +IP D P+Q+ R+ FK +PEV +D +
Sbjct: 945 FRDWWMQVQMGVEIPND-PHQQFRKKFKKMATKVFLPPSFPDRHIDEAYMQPEVDSDPSE 1003
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
Q W PD GL +FL++ G++ R + + + NK Q
Sbjct: 1004 FQ--WGVPDLNGLRSFLMATIGWSQQRTDEVLVPVIRDMNKREQ 1045
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+H+ G F R +LL G+KP++VFDG P LK+Q +A R +R
Sbjct: 52 NAHVVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIAARKKRR 95
>gi|170099279|ref|XP_001880858.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644383|gb|EDR08633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1137
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 115/263 (43%), Gaps = 40/263 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T+Q +L+L G+P + AP EAEAQCA L V + ++D D FG R +
Sbjct: 738 ITQQMITQIMTMLRLFGIPYITAPMEAEAQCAELVTLKLVDGIITDDSDVFLFGGQRVYK 797
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F +A + +L L D I L L G DY + + G+G A++L+++
Sbjct: 798 NMFNQSKT---VEGFALADLTRDLGLDQDALIRLAYLLGSDYVEGLPGVGPVVAMELLQE 854
Query: 202 HGSIETILE--------NINRERYQ------------------IPEDWPYQEARRLFKEP 235
+ + + +++ + +P DWP + + P
Sbjct: 855 FPGKDGLYKFKDWWTKVQAGKDKGEDNKSKFRKSFKKKFKDLYLPSDWPNSAVQDAYYHP 914
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QG 288
V + EE KW PD + L +FL E G+ +V + + I NK S QG
Sbjct: 915 IVDSSEEPF--KWGLPDLDALRDFLNQELGWGKAKVDENLLPIIQKMNKRSQAMALNKQG 972
Query: 289 RLESFFKPVA--NTSAPIKRKVY 309
L +F A T AP +R+ Y
Sbjct: 973 NLNAFLDVSAGSGTRAPRQRQAY 995
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
+ +H+ G R +LL G+KP++VFDG P LK+ L +R KRA A A E
Sbjct: 51 INAHVLGFLRRISKLLFYGIKPVFVFDGGAPTLKRSTLNERKKKRAGAAASHARIAE 107
>gi|171687395|ref|XP_001908638.1| hypothetical protein [Podospora anserina S mat+]
gi|170943659|emb|CAP69311.1| unnamed protein product [Podospora anserina S mat+]
Length = 1280
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 37/247 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L GVP + AP EAEAQCA L + V + ++D D+ FG R
Sbjct: 900 EVTQVMVTECQALLRLFGVPYITAPMEAEAQCAELVRLNLVDGIVTDDSDTFLFGGTRVY 959
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S K V + + + +EL L+ +Q I L L G DY + I GIG TA++++
Sbjct: 960 KNMFN--SNKF-VECYLLRDLEDELELSREQLIALAQLLGSDYTEGIPGIGPVTAVEILS 1016
Query: 201 QH------GSIETILENIN--------------RERYQ--------IPEDWPYQEARRLF 232
+ +T E++ R +++ +P +P +
Sbjct: 1017 EFPGREGLSDFKTWWEDVQSGKRPKEADASSPFRRKFRKGQATKLFLPLGFPSPAVFDAY 1076
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQG 288
PEV + +EQ Q W PD EGL FL+S G++ +R + I + + + +Q
Sbjct: 1077 LHPEVDSSQEQFQ--WGVPDLEGLRQFLMSTIGWSKERTDEVLVPVIRDVNRREAEGTQA 1134
Query: 289 RLESFFK 295
+ +F+
Sbjct: 1135 NITRYFE 1141
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 52 NSHIVGFFRRLCKLLWYGVKPVFVFDGGAPALKRATL 88
>gi|159488115|ref|XP_001702066.1| predicted protein [Chlamydomonas reinhardtii]
gi|158271440|gb|EDO97259.1| predicted protein [Chlamydomonas reinhardtii]
Length = 294
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 7/220 (3%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 82
LL G+ PI VFDG +K E R R +A + E+GN + +R V +
Sbjct: 66 LLGNGVVPIVVFDGCRLPMKADEEDNRRRGRREALERARAHAESGNMAAANECYQRAVNI 125
Query: 83 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 142
T L+ GV + AP EA+AQ + L G+V+AV +ED D L +G PR L +
Sbjct: 126 TPWMAKVVIEALRERGVRCLVAPYEADAQLSYLALRGEVHAVLTEDSDMLAYGCPRVL-Y 184
Query: 143 LMDPSSRKIPVMEFEVAKILEELNLT---MDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+D + V+ ++ ++ ELN+ D + +CIL+GCD+ +I G+G + A LI
Sbjct: 185 KLDRAGHGEEVLLADL-PLVRELNMAGFDHDMLLQMCILAGCDFLPNISGVGIKKAHGLI 243
Query: 200 RQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPEV 237
++H ++ + +P ++ +Q LF+ V
Sbjct: 244 KKHRDFVRVVRTLRFNGTTVPPNYEVRFQRTLWLFRHQRV 283
>gi|302415937|ref|XP_003005800.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
gi|261355216|gb|EEY17644.1| DNA-repair protein rad13 [Verticillium albo-atrum VaMs.102]
Length = 1209
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 38/255 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 868 EVTQVMVGECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 927
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S K+ V + + + +EL+L+ +Q + + +L G DY D + G+G TA++++
Sbjct: 928 KNMFN--SNKL-VECYLSSDLDKELSLSREQLVSIALLLGSDYTDGLPGVGPVTAVEILS 984
Query: 201 QHGSIETILE---------------------NINRERYQ--------IPEDWPYQEARRL 231
+ E L N R +++ +P +P R
Sbjct: 985 EFPESEGGLAAFCHWWADVQGQRRPKEDDAPNAFRRKFRKSQVAKLFLPVGFPNPAVREA 1044
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ +PEV E Q W P+ EGL +L++ G++ +R + + + N+ +Q
Sbjct: 1045 YMKPEVDDSPETFQ--WGVPNLEGLRQYLMATIGWSEERTDEVLVPVIRDMNRRDVEGTQ 1102
Query: 288 GRLESFFKPVANTSA 302
+ +F+ T A
Sbjct: 1103 SNITRYFEGGVGTGA 1117
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G++P++VFDG P LK+Q + R +R DD
Sbjct: 52 NSHVVGFFRRICKLLWFGIRPVFVFDGGAPALKRQTIQGRKRRREGRRDD 101
>gi|296818415|ref|XP_002849544.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
gi|238839997|gb|EEQ29659.1| DNA excision repair protein Rad2 [Arthroderma otae CBS 113480]
Length = 1066
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 700 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 759
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I GIG TAL+++ + S+E
Sbjct: 760 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSSLEE 815
Query: 208 ILENIN----------------RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ + R++++ +P +P + + + EPEV +D +
Sbjct: 816 FRDWWSQVQLGNKIPDDTHAAFRKKFKKNLTKLFLPPGFPDKAVEKAYLEPEVDSDPSEF 875
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
KW PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 876 --KWGVPDLDAVRQFLMATIGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 928
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE------A 63
+H+ G F R +LL G+KP++VFDG P LK+Q +A R +R +D A A
Sbjct: 52 NAHIVGFFRRICKLLFFGIKPVFVFDGGAPVLKRQTIANRKRRREGRREDAARTASKLLA 111
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYA 123
++ + + E +RT +H + ++L + S+AE Q + Y
Sbjct: 112 IQIQRQAEEEAAKRRT---KPRHEPEEEQLPDELIYAEETLMSKAERQRNRQFRKTDAYH 168
Query: 124 VASEDMDSLTFGA---PRFLRH 142
+ DM GA PR + H
Sbjct: 169 LPELDMSLAEMGAPNDPRIMSH 190
>gi|121699074|ref|XP_001267903.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
gi|119396045|gb|EAW06477.1| DNA excision repair protein Rad2 [Aspergillus clavatus NRRL 1]
Length = 1140
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 32/241 (13%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL+L G+P V AP EAEAQCA L G V + ++D D FG R
Sbjct: 814 EVTQVMITECQQLLRLFGLPYVTAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 873
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S V + + + +E L + I L G DY + I GIG TAL+++
Sbjct: 874 KNMFNQSKY---VECYLTSDMEKEYALQRRKLISFAHLLGSDYTEGISGIGPVTALEILT 930
Query: 201 QHGSIE-------------TILENINRERYQ----------IPEDWPYQEARRLFKEPEV 237
+ S+E +I + + Y+ +P +P + EPEV
Sbjct: 931 EFSSLEEFRDWWTQIQTGMSIPNDQHAAFYKKFRKTATKIFLPPSFPDARVDTAYLEPEV 990
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESF 293
+D Q W PD GL +FL++ G++ +R + I + + + +Q + SF
Sbjct: 991 DSDPSPFQ--WGVPDLHGLRDFLMTTIGWSQERTDEILVPVIRDMNRREQEGTQANITSF 1048
Query: 294 F 294
F
Sbjct: 1049 F 1049
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK++ +A
Sbjct: 52 NSHVVGFFRRICKLLYFGIKPVFVFDGGAPVLKRETIA 89
>gi|294660024|ref|XP_462477.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
gi|199434412|emb|CAG90987.2| DEHA2G21494p [Debaryomyces hansenii CBS767]
Length = 1034
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 122/256 (47%), Gaps = 35/256 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ D + LL+ G+P + AP EAEAQCA L K V + ++D
Sbjct: 754 QEQLQKAKRDSDEVTETMIRDVQELLRRFGIPYITAPMEAEAQCAELLKLNLVDGIITDD 813
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG + +++ ++K V + + I + L+ ++ IDL +L G DY + I+
Sbjct: 814 SDCFLFGGDKVYKNMF---NQKQYVECYIMNDINSRMGLSQEKLIDLALLLGSDYTEGIK 870
Query: 189 GIGGQTALKLIRQHGSIE--------------------------TILENINRERYQIPED 222
GIG A++++ + GS++ ++L I + +PE
Sbjct: 871 GIGPVMAMEILAEFGSLKKFKQWFDENTKTTVPPDKSGLTSIKRSLLNRIKNGTFFLPES 930
Query: 223 WPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKI 278
+P +K+PEV D ++ + KW P + + +FL+ ++ RV + I +
Sbjct: 931 FPDNVIFDAYKQPEV--DHDKSEFKWGVPSLDQIRSFLMYNVSWSQARVDEVMVPLIRDM 988
Query: 279 KAAKNKSSQGRLESFF 294
K + +Q + FF
Sbjct: 989 NRKKAEGTQSTISEFF 1004
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+H+ G F R +LL G+ PI+VFDG P LK+Q + +R +R
Sbjct: 53 AHIVGFFRRICKLLYFGIYPIFVFDGGAPALKRQTINQRRERR 95
>gi|429964483|gb|ELA46481.1| hypothetical protein VCUG_02025 [Vavraia culicis 'floridensis']
Length = 414
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 125/236 (52%), Gaps = 11/236 (4%)
Query: 9 VTSHLQG-MFTRTIR-LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA 66
V +HL +F + I+ + + G+ P+ VFDG K +R +KR +A +
Sbjct: 50 VRTHLHHDIFLKRIQGVRKHGVIPVVVFDGDSLPSKCVINERRRTKREEARRMAEIEMSK 109
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
GN D ++ ++ ++++ + + LK V V+ +P E++AQ + L + ++++ +
Sbjct: 110 GNVRDAMRYMAGSISISREMVAEIAQFLKQNDVEVIISPYESDAQLSYLQRINYIHSIMT 169
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
ED D + + L + VM +E + E+ + D +D+CILSGCDY ++
Sbjct: 170 EDSDLIVYNCNNILYKYANNH-----VMHYERSVFREKNDFLCDNLLDVCILSGCDYLEN 224
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTD 240
++G+G +A+KL+++ S+E ++ + R + +PE + + +AR FK +VV D
Sbjct: 225 VKGVGINSAIKLMKKLRSVELVVNEMRRTK-SVPESYLSNFIKARLTFKY-QVVYD 278
>gi|70991587|ref|XP_750642.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
gi|66848275|gb|EAL88604.1| DNA excision repair protein Rad2 [Aspergillus fumigatus Af293]
Length = 1130
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 794 EVTQVMITECQQLLSLFGLPYIIAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 853
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + V + + + +E L + I L L G DY + I GIG TAL+++
Sbjct: 854 KNMFNQGKF---VECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALEILT 910
Query: 201 QHGSIETILE---NINRERYQ-------------------IPEDWPYQEARRLFKEPEVV 238
+ S+E + I Y IP +P + + + EPEV
Sbjct: 911 EFSSLEEFRDWWTQIQTGMYVPETHAAFYKKFRKTATKIFIPPTFPNPQVDKAYLEPEVD 970
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 294
+D Q W PD GL NFL++ G++ +R + I + + + +Q + +FF
Sbjct: 971 SDPSPFQ--WGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRREQEGTQSNITNFF 1028
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|391332092|ref|XP_003740472.1| PREDICTED: DNA repair protein complementing XP-G cells homolog
[Metaseiulus occidentalis]
Length = 957
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 31/253 (12%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ +I + ++T ++T +DC+ LLK+ G+PVV AP EAEAQCAAL ++G V V ++D
Sbjct: 672 QNEINRIQRQTSEITASMAEDCEELLKMFGIPVVRAPREAEAQCAALEQAGLVQGVVTDD 731
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSI 187
D FG ++L + E AK +E L L+ + I +L+G DY + I
Sbjct: 732 SDIFLFGGNVVYKNLFSQDHQ----CEMYAAKTIESNLKLSREDLIGFAMLTGSDYTNGI 787
Query: 188 RGIGGQTALKLIRQHGSIETILENIN--------------------RERY---QIPEDWP 224
+G A ++I + S +++L+ + R R+ + + +P
Sbjct: 788 ENVGPVMACEIIAEFRSGKSVLKTLTEFKKWWSLAQRGAALPKNSIRTRFIKLVLDDRFP 847
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKN 283
+ + P V +E+ WS P+ + L F + + D+ + I K ++
Sbjct: 848 SEAVHSAYCHPTVERVKEKF--SWSRPNLDLLRGFTAKKFNWPQDKTDGYLLPILKRYED 905
Query: 284 KSSQGRLESFFKP 296
KSSQ R++ F P
Sbjct: 906 KSSQSRIDRFLLP 918
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 6 AGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
AG +HL G+F R +LL +KP++VFDG+ P LK Q LA R +R D + + +A +
Sbjct: 48 AGVDNAHLVGLFQRVCKLLHYKIKPVFVFDGEAPALKYQTLASRKRRREDGNEAIRKATQ 107
>gi|356528364|ref|XP_003532774.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 743
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-- 66
T H++ R L G+KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 52 TTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHES 108
Query: 67 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV
Sbjct: 109 DGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVI 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSG 180
+ED D + FG PR + MD + + +F+ + + + L+ + F +++CILSG
Sbjct: 169 TEDSDLIPFGCPRII-FKMDKFGQGV---QFQYSMLQKNKELSFEGFNRQMLLEMCILSG 224
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 227
CDY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 225 CDYLQSLPGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|260948192|ref|XP_002618393.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
gi|238848265|gb|EEQ37729.1| hypothetical protein CLUG_01852 [Clavispora lusitaniae ATCC 42720]
Length = 1019
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 118/255 (46%), Gaps = 34/255 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ D + LLK G+P + AP EAEAQCA L + G V + ++D
Sbjct: 744 QEKLQKAKRDSDEVTETMIRDVQELLKRFGIPYITAPMEAEAQCAELFRMGLVDGIVTDD 803
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG R +++ ++K V + I ++ L D+ I+L +L G DY + I+
Sbjct: 804 SDCFLFGGSRIYKNMF---NQKQYVECYIAEDIKNKIGLDQDKLIELAMLLGSDYTEGIK 860
Query: 189 GIGGQTALKLIRQHGSIET-------------------------ILENINRERYQIPEDW 223
GIG A++++ + G++ +L I + +P+ +
Sbjct: 861 GIGPVMAMEILAEFGTLSNFKLWFDRHAKSAERPQQEYTPLEKKLLTRIKNGKLFLPDGF 920
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 279
P R +K PEV D + KW P + + +FL+ ++ RV + I +
Sbjct: 921 PSSVVRDAYKRPEV--DRDDSAFKWGTPSLDQIRSFLMYNVQWSQARVDEVMVPLIRDMN 978
Query: 280 AAKNKSSQGRLESFF 294
K + +Q + FF
Sbjct: 979 RKKAEGTQSTIGEFF 993
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRA 54
SH+ G F R +LL G+ P++VFDG P LK+Q + KR +R+
Sbjct: 53 SHIVGFFRRICKLLYFGILPLFVFDGGAPPLKRQVILKRRERRS 96
>gi|193643497|ref|XP_001947849.1| PREDICTED: flap endonuclease GEN-like [Acyrthosiphon pisum]
Length = 477
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 97/202 (48%), Gaps = 24/202 (11%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L + + +L+ +F RT LL G PI+VFDG+PP LK + KR +
Sbjct: 41 LNHNISQKNMYLRNLFFRTCNLLLIGAIPIFVFDGEPPLLKYSTIEKRIN---------- 90
Query: 62 EAVEAGNKEDIEK--FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
GNK I+ KR + KQ C+ LL +MGV V EAE CA L K+G
Sbjct: 91 -----GNKAPIKTNIIRKRLNSLQKQ----CELLLNIMGVTCVYGHGEAEQLCAILNKNG 141
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILS 179
V + ++D D +GA R+ + + V + + I + L + + I L +L
Sbjct: 142 IVNGIVTQDSDCFLYGARVVYRNFNASGNGSVDV--YCMGSIEKNLKIGRSKMIALSLLC 199
Query: 180 GCDYCD-SIRGIGGQTALKLIR 200
GCDY + + GIG TA+K ++
Sbjct: 200 GCDYDEKGVLGIGKDTAIKFLQ 221
>gi|395325520|gb|EJF57941.1| PIN domain-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 606
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 13/173 (7%)
Query: 57 TDDLAEAV-------EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS--E 107
+DDL E++ EA + E + +RT T+ + +++L+ MG+P VE+ S E
Sbjct: 366 SDDLPESITRYAEDLEAKSSVLSESYQRRTYAPTQSTYSESRQILRAMGIPCVESISAFE 425
Query: 108 AEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL 167
EA A+L +G VASEDMD L + AP LR++ +S + P+ ++ L L
Sbjct: 426 GEALAASLVVNGYADYVASEDMDVLVYDAP-LLRNI---ASSQDPLFVVHPDEVRAALGL 481
Query: 168 TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIP 220
+F+D +L G D+ I+ IG AL +RQHGSIE ILE ++ ++P
Sbjct: 482 DQTRFVDFALLLGTDFSQRIKNIGPARALAFMRQHGSIERILEQESKYPLRMP 534
>gi|50309395|ref|XP_454705.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643840|emb|CAG99792.1| KLLA0E16743p [Kluyveromyces lactis]
Length = 671
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+LQ R L + P +VFDG +KK+ KR KR + + EAG++
Sbjct: 55 YLQFFIKRISMLRHFKITPFFVFDGDSIQVKKETELKRAEKRKENREKAHALFEAGDRRL 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ ++ V +T L++ +P V AP EA+AQ L K G V + SED D
Sbjct: 115 AYDYFQKCVSITPDMAKCVIEYLQMNSIPYVVAPYEADAQMVYLEKQGLVQGIISEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN--------LTMDQFIDLCILSGCDY 183
L FG R + L D + +E + + E LN LT DQ L LSGCDY
Sbjct: 175 LVFGCTRLITKLNDNAE----CIEID-RRNFERLNEGKFPLSKLTEDQLRSLVCLSGCDY 229
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFK 233
I +G TA+K + ++ ++E ++ I RE + +P + YQ A F+
Sbjct: 230 TSGIPKVGLVTAMKYVVKNRTMEQMIMAIKREGKLSVPHTFWEEYQYANFAFQ 282
>gi|315041705|ref|XP_003170229.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
gi|311345263|gb|EFR04466.1| DNA-repair protein rad13 [Arthroderma gypseum CBS 118893]
Length = 1126
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 34/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 795 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 854
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 206
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 855 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 910
Query: 207 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
I ++I+ R++++ +P +P + + + EPEV D +
Sbjct: 911 FRDWWSEIQLGNKIPDDIHAGFRKKFKKNVTKLFLPPGFPDKAVEKAYLEPEV--DPDPS 968
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
+ KW PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 969 EFKWGVPDLDAVRQFLMTTIGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 1023
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIA 89
>gi|356512555|ref|XP_003524984.1| PREDICTED: exonuclease 1-like [Glycine max]
Length = 481
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-- 66
T H++ R L G+KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 52 TTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHES 108
Query: 67 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV
Sbjct: 109 DGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVI 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSG 180
+ED D + FG PR + MD + + +F+ + + + L+ + F +++CILSG
Sbjct: 169 TEDSDLIPFGCPRIIFK-MDKFGQGV---QFQDSMLQKNKELSFEGFNRQMLLEMCILSG 224
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 227
CDY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 225 CDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|256052789|ref|XP_002569934.1| xp-G/rad2 DNA repair endonuclease family member [Schistosoma
mansoni]
Length = 828
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 94/190 (49%), Gaps = 15/190 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R + LL PI V DG P LK + +R K + K +
Sbjct: 48 HLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKI-----TTQKCTKPN 102
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ + R KV+++ C +LL G+P V++P EAEA CA L + V A + D D+
Sbjct: 103 LNRI--RFSKVSQE----CIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDA 156
Query: 132 LTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 189
+GA RH MD SR V F + +IL+ LNLT + L IL GCDY S +
Sbjct: 157 FLYGAETVYRHFSMD--SRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSR 214
Query: 190 IGGQTALKLI 199
+G AL+LI
Sbjct: 215 LGPVGALRLI 224
>gi|67538092|ref|XP_662820.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|40743207|gb|EAA62397.1| hypothetical protein AN5216.2 [Aspergillus nidulans FGSC A4]
gi|259484675|tpe|CBF81100.1| TPA: single-stranded DNA endonuclease (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 1141
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 32/241 (13%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL+L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 803 EVTQIMITECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 862
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S V + A + +E L + I L G DY + I GIG TAL+++
Sbjct: 863 KNMFNQSKY---VECYLTADLEKEYALHRRKLISFAHLLGSDYTEGIPGIGPVTALEILT 919
Query: 201 QHGSIETI------------LENINRERYQ-----------IPEDWPYQEARRLFKEPEV 237
+ S+E + N + + +P +P + EPE
Sbjct: 920 EFSSLEEFRDWWTQVQTGADMSNSSHAAFYKKFRKQATKIFLPPTFPDARVDAAYLEPEA 979
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESF 293
D Q W PD GL NFL++ G++ +R + I I + + +Q + SF
Sbjct: 980 DRDPSPFQ--WGVPDLHGLRNFLMATIGWSQERTDEVLVPVIRDINQREQEGTQSNITSF 1037
Query: 294 F 294
F
Sbjct: 1038 F 1038
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NSHIVGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTIA 89
>gi|453088882|gb|EMF16922.1| PIN domain-like protein [Mycosphaerella populorum SO2202]
Length = 1387
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 35/244 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P V AP EAEAQCA L G V + ++D D FG R
Sbjct: 1031 EVTQTMIQECQALLRLFGLPYVTAPMEAEAQCAELVHLGLVDGIVTDDSDCFLFGGTRIY 1090
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E + LE E LT + I + L G DY + + G+G TAL++I
Sbjct: 1091 KNMFN----QAKFVECYLTSDLEKEFGLTRQKLIAVANLLGSDYTEGVPGVGPVTALEII 1146
Query: 200 RQHGSIETILE-----------------NINRERYQ-------IPEDWPYQEARRLFKEP 235
+ +E E N R++++ +P +P + + EP
Sbjct: 1147 SEFPDLEEFKEWWTAVQMNERPKSEDAGNSFRKKFRRNASKLFLPHGFPDKRVEMAYLEP 1206
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLE 291
EV D + Q W PD + L +FL++ G+ +R + + + N+ +Q +
Sbjct: 1207 EVDADSQAFQ--WGVPDLDKLRSFLMATIGWTQERTDEVLVPVIKDMNRRLDEGTQANIT 1264
Query: 292 SFFK 295
+FF+
Sbjct: 1265 AFFE 1268
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R
Sbjct: 52 NSHVVGFFRRICKLLFFGIKPVFVFDGGAPALKRQTIRARKSRR 95
>gi|407928397|gb|EKG21254.1| Xeroderma pigmentosum group G protein [Macrophomina phaseolina MS6]
Length = 1302
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 919 EVTQTMIAECQQLLSLFGLPYITAPMEAEAQCAELVDLGLVDGIVTDDSDIFLFGGTRVY 978
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E +++ LE E LT + I + L G DY + I G+G TAL+++
Sbjct: 979 KNMFN----QAKFVECYLSQDLESEFGLTRRKLIAIAQLLGSDYTEGIPGVGPVTALEIL 1034
Query: 200 RQHGSIETI-------------------------LENINRERYQIPEDWPYQEARRLFKE 234
+ G +E+ N + +P ++P Q + +
Sbjct: 1035 SEFGDLESFRDWWRDVQSGTRPREADAAIPFRRKFRKTNAAKLFLPPNFPDQRVEEAYLK 1094
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA-IEKIKAAKNKSSQG 288
PEV D++ W PD + L FL+S G++ +R + + I+ N+ +G
Sbjct: 1095 PEV--DKDDTGFVWGVPDLDALRRFLMSTVGWSQERTDEVLVPVIRDMNNREREG 1147
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAE------A 63
SH+ G F R +LL G+KP++VFDG P LK+Q ++ R S+R +D A
Sbjct: 52 NSHVVGFFRRICKLLFIGIKPVFVFDGGAPALKRQTISARKSRREGRREDAVRTASKLLA 111
Query: 64 VEAGNKEDIEKFSKRTVKVTKQHNDD 89
V+ + + E+ KR +H DD
Sbjct: 112 VQMQRRAEEEE-QKRKAAAQGRHADD 136
>gi|238579680|ref|XP_002389137.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
gi|215451076|gb|EEB90067.1| hypothetical protein MPER_11778 [Moniliophthora perniciosa FA553]
Length = 391
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 108/256 (42%), Gaps = 45/256 (17%)
Query: 93 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 152
+L+L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 2 MLRLFGIPYITAPMEAEAQCAVLVSLGLVDGIITDDSDVFVFGGQRVYKNMFNQSKT--- 58
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---- 208
V F ++ + EL L I L L G DY + + G+G A++L+++ + +
Sbjct: 59 VECFLLSDLSRELGLDQGTLIRLAYLLGSDYVEGLPGVGPVVAMELLKEFPGEDGLHKFK 118
Query: 209 --------------------------LENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
E+ ++ Y +P +WP R + P V DE
Sbjct: 119 DWWTKVQTGRDKEDHIAWLWTHKYLSSEDKTKDLY-LPPEWPNSAVRDAYYHPTV--DES 175
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSS-------QGRLESFF- 294
KW PD + L FL E G+ +V + I NK S QG L FF
Sbjct: 176 DEPFKWGLPDLDALREFLREELGWGQSKVDDLLLPIIQRVNKRSKDSASNKQGSLNEFFD 235
Query: 295 -KPVANTSAPIKRKVY 309
+ T AP KR+ Y
Sbjct: 236 VSGGSGTLAPRKRQAY 251
>gi|76155152|gb|AAX26398.2| SJCHGC04804 protein [Schistosoma japonicum]
Length = 130
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
L N GE TSHL GMF RTIR++E+G+KP+YVF+G+PP +K ELAKR +R ++T +LA
Sbjct: 53 LMNAEGESTSHLMGMFYRTIRMIESGIKPVYVFEGKPPSMKAGELAKRADRRIESTKELA 112
Query: 62 EAVEAGNKEDIEKFSKR 78
+A + E IEKFSKR
Sbjct: 113 KAEAEEDLEAIEKFSKR 129
>gi|403411526|emb|CCL98226.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 119/242 (49%), Gaps = 11/242 (4%)
Query: 21 IRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 79
+RLL+ +KP VFDG P K+ + R +R + G ++ +
Sbjct: 4 VRLLQHYRIKPYIVFDGGPLPAKQGTESDRKKRRDENLARANALAAQGKHGQAREYYVKC 63
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+ VT Q + L+ VP V AP EA+AQ A L + G V + +ED D L FG +
Sbjct: 64 IDVTPQMAYQLIKALRAESVPYVVAPYEADAQLAYLERIGIVDGIITEDSDLLVFGCKKV 123
Query: 140 LRHLMDPSSRKIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGCDYCDSIRGIGG 192
L L S+ I V + A + + L + QF + ILSGCDY SI+GIG
Sbjct: 124 LFKLDPTSATIICVSRADFASVTSGSSGGISLLGWSDVQFRSMAILSGCDYLPSIQGIGL 183
Query: 193 QTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIKWS 249
+TA L+R++ ++E ++ +N E + ++P ++ +++A ++F V +++ + S
Sbjct: 184 KTAHSLLRKYKTVENVIRALNLEGKKKVPSNYLQAFRKAEKVFLYQRVYDPTQEMLVYLS 243
Query: 250 AP 251
P
Sbjct: 244 DP 245
>gi|361129990|gb|EHL01866.1| putative DNA repair protein rad13 [Glarea lozoyensis 74030]
Length = 1157
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 35/223 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT N +C+ LLK G+P + AP EAEAQCA L + G V ++D D FG R +
Sbjct: 776 VTSAMNQECQILLKKFGIPYIIAPGEAEAQCAELVRQGLVDGAITDDCDIFLFGGTRVYK 835
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
+L + S++ + + I +EL+L DQ I L L G DY + + G+G TA++L+ +
Sbjct: 836 NLFN-SNKDVEC--YLQKDIEQELSLGRDQMISLAQLLGSDYAEGLHGVGSVTAIELLSE 892
Query: 202 HGSIETILENIN---------------------RERYQ--------IPEDWPYQEARRLF 232
S T L++ R++++ +P +P +
Sbjct: 893 FSS-PTGLQDFKHWWTSVQGPHPPPLSEETSTFRKKFRRAQASKLFLPAGFPSPAVAEAY 951
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
+P V + +E+ +W PD EGL FL+ G++ +R + +
Sbjct: 952 YKPHVDSSKEEF--RWGVPDLEGLRGFLMQTIGWSQERTDEVL 992
>gi|451997573|gb|EMD90038.1| hypothetical protein COCHEDRAFT_1106592 [Cochliobolus heterostrophus
C5]
Length = 1297
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 134/281 (47%), Gaps = 39/281 (13%)
Query: 44 QELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVE 103
QEL+ + R D ++L + + A K+D + +VT+ +C++LL L G+P +
Sbjct: 904 QELSNNTATRVDFDEELKQ-LRAQQKKD----RRDADEVTQTMISECQQLLTLFGLPYIT 958
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 163
AP EAEAQCA L G V + ++D D+ FG R +++ + + V + + +
Sbjct: 959 APMEAEAQCAELVNLGLVDGIVTDDSDTFLFGGTRVYKNMFNAAKF---VECYLSSDLTS 1015
Query: 164 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR---------------QHGSIETI 208
E +LT + ID+ L G DY + + GIG TAL+++ Q+G+I+
Sbjct: 1016 EFSLTRQKLIDIAQLLGSDYTEGLPGIGPVTALEILSEFQDLTSFRKWWDGVQNGTIKKS 1075
Query: 209 --LENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLIN 258
++ R+R++ +P +P + PEV + E Q W PD L
Sbjct: 1076 DDAQSSFRKRFRKNQATKLFLPTSFPDPRVAEAYLHPEVDSSPEPFQ--WGVPDLAALRA 1133
Query: 259 FLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
+L S+ G++++R + I + + + +Q + FF+
Sbjct: 1134 YLSSQIGWSTERTDEVLVPVIRDMNRREKEGTQANITRFFE 1174
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R DD
Sbjct: 52 NSHIVGFFRRVCKLLFIGIKPVFVFDGGAPALKRQTIRHRKSRREGRRDD 101
>gi|354547816|emb|CCE44551.1| hypothetical protein CPAR2_403540 [Candida parapsilosis]
Length = 994
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 34/255 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E + K + + +VT+ D + LLK G+P + AP EAEAQCA L K G V + ++D
Sbjct: 715 QEKLHKAKRDSDEVTENMIGDVQELLKRFGIPYITAPMEAEAQCAELYKIGLVDGIITDD 774
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG R +++ S+K V + I +++ L+ + I+L IL G DY + I+
Sbjct: 775 SDCFLFGGDRIYKNMF---SQKQFVECYLKNDIEDKIGLSRENLIELAILLGSDYTEGIK 831
Query: 189 GIGGQTALKLIRQHGSIE-------------------------TILENINRERYQIPEDW 223
GIG A++++ + GS++ + I + +P+++
Sbjct: 832 GIGPVLAVEILAEFGSLQGFKKWFDEKTKTTKLDQGVLTPLQKNLTNRIKNGKLFLPDNF 891
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 279
P + ++ PEV D ++ + KW P+ + + +FL+ ++ +RV + I +
Sbjct: 892 PDKVIFEAYQHPEV--DSDKSEFKWGIPNLDQIRSFLMFNVNWSQERVDEVMVPLIRDLN 949
Query: 280 AAKNKSSQGRLESFF 294
+ + +Q + FF
Sbjct: 950 KKRAEGTQSTIGEFF 964
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
SH+ G F R +LL G++PI+VFDG P LK+Q + +R ++R ++ +A +
Sbjct: 53 SHIVGFFRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRQAAQ 107
>gi|327298531|ref|XP_003233959.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
gi|326464137|gb|EGD89590.1| DNA excision repair protein [Trichophyton rubrum CBS 118892]
Length = 1121
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 795 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 854
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 855 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 910
Query: 208 ILENINRER--YQIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 243
+ ++ + Y+IP+D P++ R+ FK EPEV +D
Sbjct: 911 FRDWWSQVQLGYKIPDD-PHEGFRKKFKKNVTKLFLPPGFPNKAVEKAYLEPEVDSDPSG 969
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
W PD + + FL++ G++ +R + I + + + +Q + FF+
Sbjct: 970 F--IWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDVNRREQEGTQSNITGFFQ 1023
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|255714619|ref|XP_002553591.1| KLTH0E02398p [Lachancea thermotolerans]
gi|238934973|emb|CAR23154.1| KLTH0E02398p [Lachancea thermotolerans CBS 6340]
Length = 665
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 121/256 (47%), Gaps = 9/256 (3%)
Query: 7 GEVTSHLQGMFTRTIRLLEA--GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
G TS F + + +L + P VFDG +KK KR KRA+ +
Sbjct: 49 GRPTSKYLEFFIKRLNMLRNRFNINPYLVFDGDAIMVKKDTELKRKQKRAENKERALALW 108
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
+AG+K + ++ V VT + ++ + + AP EA+AQ L K G V+ +
Sbjct: 109 KAGDKRQAYDYFQKCVDVTPEMAKCVIEYCQVQDIKYIVAPFEADAQMVYLEKKGLVHGI 168
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTM---DQFIDLCILSGC 181
SED D L FG + + L D I + + ++ + L+ ++ + LSGC
Sbjct: 169 ISEDSDLLIFGCRKLITKLTD-HGEGIEICRDDFPRLPSKFPLSQLCPEETRAMVCLSGC 227
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVV 238
DY I IG TA+KL+R+H +++ I++NI RE ++ +P+++ YQ A F+ V
Sbjct: 228 DYTAGIPKIGLLTAMKLVRKHKTMDNIIKNIQREGKFVVPKEFLEEYQLASFAFQFQRVY 287
Query: 239 TDEEQLQIKWSAPDEE 254
E + S EE
Sbjct: 288 CPENGMMTTLSEIPEE 303
>gi|403348528|gb|EJY73701.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 16/219 (7%)
Query: 19 RTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-EAVEAGNKEDIEKF 75
+ ++L++ G+KPI VFDGQ LK +E ++ S +LA + E GN+ED K+
Sbjct: 61 KMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQKAEDGNEEDARKY 118
Query: 76 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
R++ + + D +LK + + +V AP EA++Q A + K G SED D + +G
Sbjct: 119 FMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIADFAISEDSDLIAYG 178
Query: 136 APRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDLCILSGCDYCDSIR 188
P+ L L + + + +F+ + + L + +QF+ +CI++GC+Y SI+
Sbjct: 179 CPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQICIMAGCEYLPSIQ 238
Query: 189 GIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 223
+G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 239 QVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|403337691|gb|EJY68068.1| XPG family protein [Oxytricha trifallax]
Length = 719
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 16/219 (7%)
Query: 19 RTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-EAVEAGNKEDIEKF 75
+ ++L++ G+KPI VFDGQ LK +E ++ S +LA + E GN+ED K+
Sbjct: 61 KMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQKAEDGNEEDARKY 118
Query: 76 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
R++ + + D +LK + + +V AP EA++Q A + K G SED D + +G
Sbjct: 119 FMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIADFAISEDSDLIAYG 178
Query: 136 APRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDLCILSGCDYCDSIR 188
P+ L L + + + +F+ + + L + +QF+ +CI++GC+Y SI+
Sbjct: 179 CPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQICIMAGCEYLPSIQ 238
Query: 189 GIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 223
+G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 239 QVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|403371708|gb|EJY85737.1| XPG family protein [Oxytricha trifallax]
Length = 734
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 16/219 (7%)
Query: 19 RTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLA-EAVEAGNKEDIEKF 75
+ ++L++ G+KPI VFDGQ LK +E ++ S +LA + E GN+ED K+
Sbjct: 61 KMLKLVQTYGIKPICVFDGQ--HLKAKEATEKVRSHNKQVNKELAMQKAEDGNEEDARKY 118
Query: 76 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
R++ + + D +LK + + +V AP EA++Q A + K G SED D + +G
Sbjct: 119 FMRSLILRSKMIDLFIDILKKLEIEMVVAPYEADSQIAYMVKEGIADFAISEDSDLIAYG 178
Query: 136 APRFLRHL-MDPSSRKIPVMEFEVAKILEELNL------TMDQFIDLCILSGCDYCDSIR 188
P+ L L + + + +F+ + + L + +QF+ +CI++GC+Y SI+
Sbjct: 179 CPKLLMKLNFNGYCKVFSINDFKANNQITDQTLAYLQKTSREQFVQICIMAGCEYLPSIQ 238
Query: 189 GIGGQTALKL-IRQHGSIETILENINRERY---QIPEDW 223
+G + A+KL ++ +G +E +LE++ + ++PE +
Sbjct: 239 QVGLKVAIKLFMKNNGDVEQVLESLKTNKIFKDRVPEGY 277
>gi|119178413|ref|XP_001240880.1| hypothetical protein CIMG_08043 [Coccidioides immitis RS]
gi|392867161|gb|EAS29637.2| DNA excision repair protein (rad2) [Coccidioides immitis RS]
Length = 1142
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LLKL G+P V AP EAEAQCA L G V + ++D D FG R +++ + +
Sbjct: 818 ECQQLLKLFGLPYVTAPMEAEAQCAELVSLGLVDGIVTDDSDIFLFGGTRIYKNMFNQAK 877
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE- 206
+E +A LE E +L + I L G DY + I GIG TAL+++ + +E
Sbjct: 878 ----FVECYLASDLEKEYSLDRKKLISFAHLLGSDYTEGIPGIGPVTALEILTEFPGLEE 933
Query: 207 ------------TILENIN---RERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
TI ++ + R++++ +P +P + + EPEV D
Sbjct: 934 FRDWWSKVQMGVTISDDTHSKFRKKFKKNAAKLFLPPAFPDKRVDIAYLEPEVDPDPSAF 993
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
Q W PD E L FL+S G++ +R + I + + + +Q + FF
Sbjct: 994 Q--WGVPDLEALRQFLMSTVGWSPERTDEVLVPVIRDVNRRELEGTQANITQFF 1045
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHVVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|12323539|gb|AAG51751.1|AC068667_30 exonuclease, putative; 92014-93872 [Arabidopsis thaliana]
Length = 317
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 30/272 (11%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA---GN 68
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E GN
Sbjct: 55 HIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHEANGN 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + V ++ + ++L+ V V AP EA+AQ A L + QV A+ +ED
Sbjct: 112 SSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDY 183
D + FG R + MD + EF+ +K+ + +L++ F +++CILSGCDY
Sbjct: 172 SDLIPFGCLRIIFK-MDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDE 241
S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 228 LQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYD-- 285
Query: 242 EQLQIKWSAPDEEGLINFL-VSEN-GFNSDRV 271
P+ E +I+ +S+N G +SD V
Sbjct: 286 ---------PNAEDIIHLCDISDNLGEDSDFV 308
>gi|367019746|ref|XP_003659158.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
gi|347006425|gb|AEO53913.1| hypothetical protein MYCTH_2295852 [Myceliophthora thermophila ATCC
42464]
Length = 1244
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 39/247 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 868 EVTQVMVTECQALLTLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 927
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKL- 198
+++ + + +E +AK LE EL+L+ +Q I L L G DY + + G+G TAL++
Sbjct: 928 KNMFNSNK----YVECYLAKDLETELSLSREQLIALAQLLGSDYTEGLPGVGPVTALEIL 983
Query: 199 ------------------IRQHGSI-ETILENINRERYQ--------IPEDWPYQEARRL 231
++ HG E ++ R +++ +P +P
Sbjct: 984 SEFPGRDGLAEFRDWWQDVQNHGRPKEADADSPFRRKFRKAHATKLFLPVGFPNPAVFDA 1043
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ PEV ++ E Q W PD +GL FL+ G++ +R + + + NK +Q
Sbjct: 1044 YLHPEVDSNTEPFQ--WGVPDLDGLRRFLMETIGWSQERTDEVLVPVIRDMNKRDVEGTQ 1101
Query: 288 GRLESFF 294
+ FF
Sbjct: 1102 SNITRFF 1108
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 52 NSHVVGFFRRICKLLWHGVKPVFVFDGGAPALKRATL 88
>gi|327350765|gb|EGE79622.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ATCC
18188]
Length = 1166
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 841 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 897
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 898 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 956
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ + R++++ +P +P + + EPEV +D
Sbjct: 957 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 1016
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 1017 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1074
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1075 GAFAPHRR 1082
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|322694710|gb|EFY86532.1| DNA excision repair protein Rad2 [Metarhizium acridum CQMa 102]
Length = 1168
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 871 EVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLGIVDGIVTDDSDTFLFGGTRVY 930
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E ++K LE EL+L+ DQ I L L G DY + + G+G TA++++
Sbjct: 931 KNMFNSNK----FVECYISKDLEKELSLSRDQLISLAQLLGSDYTEGLPGVGPVTAVEIL 986
Query: 200 RQHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARR 230
+ ++ LE+ R++++ +P +P
Sbjct: 987 SEFPG-KSGLEDFREWWTSVQSQSRPKEADAASPFRKKFRKTQATKLFLPPGFPNPAVYE 1045
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK 284
+ PEV E Q W PD EGL FL++ G++ +R + + + NK
Sbjct: 1046 AYLHPEVDDTAEPFQ--WGVPDLEGLRRFLMATIGWSKERTDEVLVPVIRDMNK 1097
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKK 43
SH+ G F R +LL G++P++VFDG P LK+
Sbjct: 52 NSHVVGFFRRICKLLWFGIQPVFVFDGGAPALKR 85
>gi|239609845|gb|EEQ86832.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis ER-3]
Length = 1166
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 841 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 897
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 898 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 956
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ + R++++ +P +P + + EPEV +D
Sbjct: 957 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 1016
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 1017 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1074
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1075 GAFAPHRR 1082
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|326482848|gb|EGE06858.1| DNA-repair protein rad13 [Trichophyton equinum CBS 127.97]
Length = 1119
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 793 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 852
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 853 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEE 908
Query: 208 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 243
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 909 FRDWWSQVQLGNKIPDD-PHARFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 967
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 295
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 968 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1021
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|326474654|gb|EGD98663.1| DNA excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 1119
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 793 ECQQLLRLFGLPYITAPMEAEAQCAELVTLGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 852
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 853 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSGLEE 908
Query: 208 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 243
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 909 FRDWWSQVQLGNKIPDD-PHARFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 967
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 295
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 968 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1021
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|429853644|gb|ELA28704.1| DNA excision repair protein rad2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1240
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 39/248 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R
Sbjct: 902 EVTQVMVTECQALLRLFGIPYITAPMEAEAQCAELVHLGLVDGIVTDDSDTFLFGGTRVY 961
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E + LE EL+L+ DQ I + L G DY + + G+G TA++++
Sbjct: 962 KNMFNSNK----FVECYLGSDLEKELSLSRDQLIAIAQLLGSDYTEGLPGVGPVTAVEIL 1017
Query: 200 RQHGSIETILE--------------------NINRERYQ--------IPEDWPYQEARRL 231
+ + + + N R +++ +P +P
Sbjct: 1018 SEFPGKDGLAKFRDWWQEVQMNSRPKEADATNPFRRKFRKSQATKLFLPTGFPNPAVTDA 1077
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ PEV + EQ Q W PD EGL FL++ G++ +R + + + NK +Q
Sbjct: 1078 YLRPEVDSSPEQFQ--WGVPDLEGLRQFLMATIGWSKERTDEVLVPVIRDMNKRDVEGTQ 1135
Query: 288 GRLESFFK 295
+ +F+
Sbjct: 1136 ANITRYFE 1143
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+KP++VFDG P LK+Q +
Sbjct: 52 NSHVVGFFRRICKLLWFGIKPVFVFDGGAPVLKRQTI 88
>gi|390599160|gb|EIN08557.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 317
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 8/217 (3%)
Query: 21 IRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 79
+RLL G+ P VFDG P KK+ +R +R + + G ++ +
Sbjct: 63 VRLLRHYGITPYLVFDGGPLPAKKRTEVERAKRREENLAKGKQLAAQGRHSQAREYFVKC 122
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
+ VT Q + LK VP V AP EA+AQ A L ++G V A+ +ED D L FG
Sbjct: 123 IDVTPQMAYQLIKALKAENVPYVVAPYEADAQLAYLERTGAVSAILTEDSDLLVFGCRHV 182
Query: 140 LRHLMDPSSRKIPVMEFEVAKI----LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTA 195
L L S+ V + + + L + QF + ILSGCDY SI G+G +TA
Sbjct: 183 LFKLDHVSATVSAVSRSDFGSLSSSDITLLGWSDVQFRAMAILSGCDYLPSIPGVGLKTA 242
Query: 196 LKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 231
L+R+H ++E + + E + +P+ Y +A RL
Sbjct: 243 WALLRKHKNVENAVRALRLEGKKPVPDG--YLDAFRL 277
>gi|157112576|ref|XP_001657573.1| exonuclease [Aedes aegypti]
gi|108878018|gb|EAT42243.1| AAEL006209-PA [Aedes aegypti]
Length = 770
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 19/301 (6%)
Query: 7 GEVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
GE T H+Q LL +KPI VFDG+ K AKR R ++ AE +
Sbjct: 49 GEPTDVHIQYCLKYVNMLLSHDIKPILVFDGRHLPAKAMTEAKRRESRDNSRKRAAELLR 108
Query: 66 AGNKEDIEKFSKRTVKVTK----QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
G E+ + + +R V +T Q +C+R V V AP EA+AQ A L + G
Sbjct: 109 VGKTEEAKSYLRRCVDITHEMALQLIQECRR----RNVDCVVAPYEADAQLAYLNRKGIA 164
Query: 122 YAVASEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSG 180
AV +ED D + FG + L L + + I + +A +E T D+F +CILSG
Sbjct: 165 QAVITEDSDLMLFGCSKVLFKLDLTGTGLMIEAEKLYLAMGCKEEKYTFDKFRYMCILSG 224
Query: 181 CDYCDSIRGIGGQTALKLIRQ------HGSIETILENINRERYQIPEDWP--YQEARRLF 232
CDY +S+ GIG A K + ++ I +N + ++ E + + +A F
Sbjct: 225 CDYLESLPGIGLAKAKKFVLTTEDTDIRRALSKIPAYLNMRQLEVSEQYKEEFMKADATF 284
Query: 233 KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLES 292
K V E+ Q + + P + G L G D T A+E N S RL++
Sbjct: 285 KHMVVFDPVERKQARLNEPSDMGTHPDLCCNAGNFLDDET-ALELALGNLNPFSMKRLDN 343
Query: 293 F 293
+
Sbjct: 344 W 344
>gi|397639140|gb|EJK73406.1| hypothetical protein THAOC_04971, partial [Thalassiosira oceanica]
Length = 269
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 101/233 (43%), Gaps = 41/233 (17%)
Query: 98 GVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFE 157
G+P VE+PSEAEAQCAAL + G V V +ED D FG + ++ D V +
Sbjct: 4 GIPWVESPSEAEAQCAALERLGLVDGVVTEDSDIFVFGGQKVYKNFFDEQKF---VEAYY 60
Query: 158 VAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ-----------HGSIE 206
I EL L D+ + L +L G DY D +RG+G ++++R HG +
Sbjct: 61 ARDIERELGLDKDRLVALAMLLGGDYTDGVRGVGIVNGMEVLRAFPPAADGVEGVHGGLS 120
Query: 207 TILENIN------------------------RERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+ ++ R R+ P D+P + + P V D
Sbjct: 121 RFRDWMDGIGDVLPDDATPPEVAFHGKHRSARTRWAAPADFPSRGIITAYLRPAV--DTS 178
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSSQGRLESFF 294
+ W+ PD + L F G+ + + + + K ++ S+Q RLES+F
Sbjct: 179 GTRFTWARPDLDALQRFCADALGWEREETARVVGPVLKVLESTSTQTRLESYF 231
>gi|145324070|ref|NP_001077624.1| exonuclease 1 [Arabidopsis thaliana]
gi|166232400|sp|Q8L6Z7.2|EXO1_ARATH RecName: Full=Exonuclease 1
gi|332192991|gb|AEE31112.1| exonuclease 1 [Arabidopsis thaliana]
Length = 735
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 133/272 (48%), Gaps = 30/272 (11%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA---GN 68
H+Q R L G+KPI VFDG P +K ++ KR R ++LA A+E GN
Sbjct: 55 HIQYCMHRVNLLRHHGVKPIMVFDGGPLPMKLEQENKRARSR---KENLARALEHEANGN 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + V ++ + ++L+ V V AP EA+AQ A L + QV A+ +ED
Sbjct: 112 SSAAYECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDY 183
D + FG R + MD + EF+ +K+ + +L++ F +++CILSGCDY
Sbjct: 172 SDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFSSQMLLEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDE 241
S+ G+G + A LI + S + +++++ +P + ++ A FK V
Sbjct: 228 LQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYD-- 285
Query: 242 EQLQIKWSAPDEEGLINFL-VSEN-GFNSDRV 271
P+ E +I+ +S+N G +SD V
Sbjct: 286 ---------PNAEDIIHLCDISDNLGEDSDFV 308
>gi|261198979|ref|XP_002625891.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
gi|239595043|gb|EEQ77624.1| DNA excision repair protein Rad2 [Ajellomyces dermatitidis SLH14081]
Length = 1128
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 803 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 859
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL + I L G DY + I G+G TAL+++ + ++E
Sbjct: 860 -TVKFVECYLSNDLEKEYNLDRSKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFPTLED 918
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ + R++++ +P +P + + EPEV +D
Sbjct: 919 FRDWWSQVQMGAKLPEDSHSAFRKKFKKNVTKLFLPPGFPDKRIDSAYLEPEVDSDPSAF 978
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK-PV-A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ P+ A
Sbjct: 979 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPLGA 1036
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1037 GAFAPHRR 1044
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R +D A
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPALKRQTIVSRKQRREGRREDAA 103
>gi|68059974|ref|XP_671969.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56488629|emb|CAI03948.1| hypothetical protein PB301454.00.0 [Plasmodium berghei]
Length = 151
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 100 PVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVA 159
P ++AE +CA C S + V S+D D+L FGAP +R + + R I +
Sbjct: 1 PYFYTKNDAEKECAIQC-SHEKDIVVSDDTDALAFGAPNLIRFITNKKKRHIINKD---- 55
Query: 160 KILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ- 218
+IL ELN+ +QFID CILSGCDY I GIG A ++I+++ +IET LE+ ++Y
Sbjct: 56 EILNELNINYEQFIDFCILSGCDYSAKIPGIGPIKAYEIIKKYKTIETFLESSAFDKYSN 115
Query: 219 ------------------IPEDWPYQEARRLF 232
I ++ Y++AR++F
Sbjct: 116 TKRFNRKLSDVSMSLKDYILNEFTYEQARKIF 147
>gi|393220967|gb|EJD06452.1| PIN domain-like protein, partial [Fomitiporia mediterranea MF3/22]
Length = 1250
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 112/252 (44%), Gaps = 40/252 (15%)
Query: 93 LLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIP 152
+L+L G+P + AP EAEAQCAAL G V V ++D D FGA R +++ + S
Sbjct: 826 MLRLFGIPYITAPMEAEAQCAALVDLGLVDGVITDDSDVFLFGAKRVYKNMFNQSKT--- 882
Query: 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI---- 208
V F + + EL L I L L G DY + G+G A++L+++ + +
Sbjct: 883 VECFLLTDLARELGLDRGTLIRLAYLLGSDYTLGLPGVGPVVAMELLQEFPGDDGLHKFK 942
Query: 209 -------------LENINRERYQ---------IPEDWPYQEARRLFKEPEVVTDEEQLQI 246
+NI+ R + +P DWP R + P V T EE
Sbjct: 943 DWWMKVQSGRDRESDNISNFRRRFKKRFKDLYLPGDWPNPAVRDAYYHPVVDTSEEPF-- 1000
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-------SSQGRLESFFKPV-- 297
KW PD +GL +F E +N+ +V + + I NK + Q L +FF
Sbjct: 1001 KWGLPDLDGLRSFFHDELSWNAGKVDELLLPIIQRMNKRGQQSTANRQDTLNTFFSVSEG 1060
Query: 298 ANTSAPIKRKVY 309
A + P +R+ Y
Sbjct: 1061 AGAAEPRRREAY 1072
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK+ +A+R K++ A + A E
Sbjct: 49 GLVNAHVLGFLRRICKLLFYGIKPVFVFDGGAPALKRMTIAERKKKKSGAAESHARIAE 107
>gi|443920093|gb|ELU40082.1| flap structure-specific endonuclease [Rhizoctonia solani AG-1 IA]
Length = 1377
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 119/265 (44%), Gaps = 47/265 (17%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT Q + + LL+L GVP V AP EAEAQCA L + G V V ++D D FGA R R
Sbjct: 945 VTAQMSAQIQILLRLFGVPFVNAPMEAEAQCAFLAQHGLVEGVITDDSDVFLFGAGRVYR 1004
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F A + EL L + I L L G DY + + G+G A++++++
Sbjct: 1005 NMFNQSKT---VECFLAADLDRELGLDRETLISLAYLLGSDYTEGLPGVGPVVAMEIMKE 1061
Query: 202 HGSIETILENINRE------RYQIPEDW------------------PYQEARR-LFKEPE 236
EN RE + Q+ +D P ++R + EP
Sbjct: 1062 FPG-----ENGLREFCKWWRKVQVGKDVEADLGTTFRKHLGSICLKPLTPSKREAYLEPT 1116
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-------KAAKNKSSQGR 289
V EE+ Q W PD +GL FL E + +++V + I I ++ + QG
Sbjct: 1117 VDESEERFQ--WGLPDLDGLRRFLGDELSWPTEKVDETIIPIIRRMTQRSSSTTANRQGT 1174
Query: 290 LESF-----FKPVANTSAPIKRKVY 309
L SF F T AP K + Y
Sbjct: 1175 LTSFIEGHTFTSNNVTRAPRKTQAY 1199
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
V +H+ G RT +LL G+KP++VFDG P LK+ +A+R +++ A + A+ E
Sbjct: 70 VNAHILGFLRRTSKLLFHGIKPVFVFDGGAPVLKRSTIAERKKRKSGAAANHAKVAE 126
>gi|242800576|ref|XP_002483617.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
gi|218716962|gb|EED16383.1| DNA excision repair protein Rad2 [Talaromyces stipitatus ATCC 10500]
Length = 1128
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 830 ECQQLLRLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVYKNMFNQSK 889
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
V F + + +E L + I L G DY + I G+G TAL++I + ++E
Sbjct: 890 F---VECFLSSDLEKEYALDRIKLIQFAHLLGSDYTEGIPGVGPVTALEIITEFTNLEEF 946
Query: 209 LENINRER--YQIPEDWPYQEARRLFKE-----------PEVVTDEEQL---------QI 246
+ + + +IP D P+Q R+ FK+ P+ DE L +
Sbjct: 947 RDWWMQVQMGMEIPND-PHQRFRKKFKKMATKIFLPPSFPDRHIDEAYLHPAVDNDPSEF 1005
Query: 247 KWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
+W PD GL +FL++ G++ +R + + + NK Q
Sbjct: 1006 QWGVPDLNGLRSFLMATIGWSQERTDEVLVPVIRDMNKREQ 1046
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHVVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIA 89
>gi|240273423|gb|EER36944.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H143]
Length = 1159
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ A
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPQGA 1063
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1064 GAFAPHRR 1071
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|325095909|gb|EGC49219.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus H88]
Length = 1159
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGANLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ A
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPQGA 1063
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1064 GAFAPHRR 1071
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|320167587|gb|EFW44486.1| exodeoxyribonuclease 1 [Capsaspora owczarzaki ATCC 30864]
Length = 522
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 5/158 (3%)
Query: 85 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 144
+H C L+ + V + AP EA+AQ L + + AV SED D L FG R L + M
Sbjct: 77 RHYQKCVDALRAINVEYIVAPYEADAQLGYLARENYIAAVISEDSDLLLFGCQRVL-YKM 135
Query: 145 DPSSRKIPVMEFEVAKILE-EL-NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 202
D + + + + A LE +L N T+DQ +CILSGCDY DSI GIG +TA KL+ ++
Sbjct: 136 DKFGEGVLIDQKDFANCLELDLQNWTLDQLRRMCILSGCDYLDSISGIGLKTANKLLIRY 195
Query: 203 GSIETILENINRERYQIPEDWP--YQEARRLFKEPEVV 238
+++ ++ ++ ++ +P D+ + +A FK VV
Sbjct: 196 KTVQNVVTHMRKKMMDVPRDYEDLFLQAENTFKYQRVV 233
>gi|302665120|ref|XP_003024173.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
gi|291188218|gb|EFE43562.1| hypothetical protein TRV_01672 [Trichophyton verrucosum HKI 0517]
Length = 1120
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 34/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 794 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 853
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + I L G DY + I GIG TAL+++ + +E
Sbjct: 854 ----YVECYLSSDLEKEYTLDRKKLISFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 909
Query: 208 ILE-----------------------NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N + +P +P + + + EPEV +D +
Sbjct: 910 FRDWWSQVQLGNKIPDDPHAGFRKKFKKNTTKLFLPPGFPDKAVEKAYLEPEVDSDPSEF 969
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 295
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 970 --KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1022
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|225558184|gb|EEH06469.1| DNA excision repair protein Rad2 [Ajellomyces capsulatus G186AR]
Length = 1159
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 830 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 886
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 887 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 945
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ +I R++++ +P +P + + EP+V +D
Sbjct: 946 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 1005
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ A
Sbjct: 1006 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPQGA 1063
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1064 GAFAPHRR 1071
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRR 95
>gi|237832503|ref|XP_002365549.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
gi|211963213|gb|EEA98408.1| RAD2 endonuclease, putative [Toxoplasma gondii ME49]
Length = 2004
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 37/252 (14%)
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 195 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 226
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAK 282
E F+ P + D + W+ PD + ++ + G V A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 283 NKSSQGRLESFF 294
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 53 AHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|154280855|ref|XP_001541240.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
gi|150411419|gb|EDN06807.1| hypothetical protein HCAG_03337 [Ajellomyces capsulatus NAm1]
Length = 1111
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 781 ECQELLRLFGLPYITAPMEAEAQCAELLSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 837
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+ +E ++ LE E NL ++ I L G DY + I G+G +AL+++ + ++E
Sbjct: 838 -QAKFVECYISNDLEKEYNLDRNKLIQFAHLLGSDYTEGIPGVGPVSALEILTEFPTLED 896
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ +I R++++ +P +P + + EP+V +D
Sbjct: 897 FRDWWSQVQMGAKLPEDSHSIFRKKFKKNVTKLFLPPGFPDKRVDTAYLEPKVDSDPSAF 956
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--A 298
Q W PD L FL+S G++ +R + I + + + +Q + +FF+ A
Sbjct: 957 Q--WGVPDLNALRQFLMSTIGWSQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPQGA 1014
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1015 GAFAPHRR 1022
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R ++ A+
Sbjct: 52 NAHIVGFFQRICKLLYFGIKPVFVFDGGAPTLKRQTIMSRKQRREGKRENAAKTA 106
>gi|221508520|gb|EEE34089.1| DNA-repair protein xp-G, putative [Toxoplasma gondii VEG]
Length = 2004
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 37/252 (14%)
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 195 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 226
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAK 282
E F+ P + D + W+ PD + ++ + G V A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 283 NKSSQGRLESFF 294
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 53 AHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|221487998|gb|EEE26212.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 2004
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 37/252 (14%)
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
++T +T++ D LL+ GVP + AP EAEA A L K AV S+D D+L F
Sbjct: 1414 LQQQTGNITERMKDQVIALLRAFGVPFITAPGEAEATAAYLTKQNLADAVISDDSDALVF 1473
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1474 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLGQQQLILLAMLLGCDYTLGVKGIGIVN 1530
Query: 195 ALKLIRQHGSIETIL---------------------------ENIN-RERYQIPEDWPYQ 226
A++++R + S+E++ E+ N R ++ P D+P
Sbjct: 1531 AVEVLRAYPSLESLRAFRAWAEAPWTLGITASDSAEVRKYKEEHKNYRLQWIFPHDFPSP 1590
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAK 282
E F+ P + D + W+ PD + ++ + G V A+++ +A
Sbjct: 1591 EVFDAFESP--LVDRSREPFSWAVPDVDSIVAIMTHAGGLRRSEVLDCLLPAVQRYTSAH 1648
Query: 283 NKSSQGRLESFF 294
Q R+ +F
Sbjct: 1649 AFQRQTRITAFL 1660
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 53 AHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLTRKRQR 95
>gi|321465723|gb|EFX76723.1| hypothetical protein DAPPUDRAFT_33887 [Daphnia pulex]
Length = 231
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 16 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAK----RYSKRADATDDLAEAVEAGNKED 71
+F RT LLE G+ PIY+ +G+ P+LK Q + K R+ AT + A + G
Sbjct: 3 LFFRTASLLENGIDPIYILEGKAPELKAQVMQKRREARFGSNQPATSESATSKSTG---- 58
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ K +Q +C LL +GV + + EAEA CA L G V + D D+
Sbjct: 59 -----RSRYKYIQQ---ECTELLTALGVVTITSMGEAEAACAGLNHQGVVEGCITIDGDA 110
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGI 190
+GA R+L E+ + I LNL+ D+ I + IL GCDY D + G+
Sbjct: 111 FLYGAKTVYRNL-STDIHNFVCQEYSMDVIETRLNLSRDKLIAMAILFGCDYLPDGVPGV 169
Query: 191 GGQTALKLI 199
G ++AL++I
Sbjct: 170 GKESALRVI 178
>gi|212546421|ref|XP_002153364.1| exonuclease, putative [Talaromyces marneffei ATCC 18224]
gi|210064884|gb|EEA18979.1| exonuclease, putative [Talaromyces marneffei ATCC 18224]
Length = 749
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T H+ + R LL G+ P VFDG K A R+ KR D+ E G
Sbjct: 52 TTRHVDFVLNRVRMLLFFGVTPYLVFDGGDLPSKSGTEADRFKKREDSRKLALELQSKGR 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + ++ V VT + LK M V V AP EA+AQ L + G + + SED
Sbjct: 112 VAEAYQEFQKAVDVTPEMARQLIEELKRMKVQYVVAPYEADAQLVYLERQGIINGIISED 171
Query: 129 MDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 187
D L FGA R L L +I +F + + + + F +CILSGCDY +I
Sbjct: 172 SDLLVFGAKRLLSKLDQHGDCIEINRGDFAACRDISLIGWSDADFRRMCILSGCDYLSNI 231
Query: 188 RGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQL 244
+G +TA + +R++ +++ +L + E YQ+P + +++A F L
Sbjct: 232 PKLGLKTAYRSMRKYKNVDKVLRVLQFEGHYQVPAGYLDSFRQAENTF-----------L 280
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDRV 271
+ P+ + L+ VS G D +
Sbjct: 281 YQRVFCPNAQKLVTLTVSGPGMKLDEM 307
>gi|449543076|gb|EMD34053.1| hypothetical protein CERSUDRAFT_107818 [Ceriporiopsis subvermispora
B]
Length = 1202
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 115/264 (43%), Gaps = 42/264 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT+Q +L+L G+P + AP EAEAQCA L G V + ++D D FG R L+
Sbjct: 812 VTQQMVSQIMVMLRLFGIPYITAPMEAEAQCAELLTLGLVDGIITDDSDVFLFGGQRVLK 871
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V + + + EL L D+ I L L G DY + + G+G A++L+ +
Sbjct: 872 NMFNQSKT---VECYLLPDLDRELGLDRDKLIRLAYLLGSDYTEGLPGVGPVVAMELLTE 928
Query: 202 HGSIETI---------------LENINR------------ERYQIPEDWPYQEARRLFKE 234
++ + E N+ E Y + DWP R +
Sbjct: 929 FPGLDGLHKFKDWWQRVQSGRDSEADNKSKFRRRFKKRFKELY-LSSDWPNPAVRDAYYH 987
Query: 235 PEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI--KAAKNKSS-----Q 287
P V EE KW PD + L + +E G+ +V + + K K S Q
Sbjct: 988 PTVDHSEEPF--KWGLPDLDALREYFNAELGWQQGKVDDLLLPVIRKMGKRGQSSAVNRQ 1045
Query: 288 GRLESFFK-PVANTS-APIKRKVY 309
G L SFF P+ S AP KR+ Y
Sbjct: 1046 GNLNSFFDLPIGGESHAPRKRQAY 1069
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G+KP++VFDG P LK+ +A+R SK++ A A+ E
Sbjct: 49 GLVNAHVLGFLRRISKLLFYGIKPVFVFDGGAPALKRSTIAERKSKKSGAAASHAKVAE 107
>gi|170041796|ref|XP_001848636.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167865395|gb|EDS28778.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 724
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 14/216 (6%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLK------KQELAKRYSKRADATDDLAEAVE 65
+L+ +F RT LL G+ P++V +G P LK + ++ R ++ A D EA
Sbjct: 51 YLRNLFFRTCYLLTTGIVPVFVLEGAAPPLKYGVIIQRNQIQFRGARPKKAADCDKEAT- 109
Query: 66 AGNKEDIEKFSKRTV--KVTKQHN--DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
G+K ++ KR K + H+ C+ LL MG+ V+AP EAEA CA L + V
Sbjct: 110 GGDKRKQDEPGKRAPEQKRNRFHHVLKQCEELLSSMGLVCVQAPGEAEALCAHLNRENLV 169
Query: 122 YAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGC 181
+ + S+D D +G R R+ S V +++ I ++L ++ + + ILSGC
Sbjct: 170 HGIISQDSDCFAYGGVRVYRNFC-ASQNGGSVEIYDLENIRRVMDLGQEKIVVMGILSGC 228
Query: 182 DYCDS-IRGIGGQTALKLIRQHGSIETILENINRER 216
DY + + G+G + +LIR + S E IL+ I R
Sbjct: 229 DYSPAGVPGVGRELVHRLIRSYPSWE-ILDRIRAWR 263
>gi|150865308|ref|XP_001384465.2| hypothetical protein PICST_35911 [Scheffersomyces stipitis CBS
6054]
gi|149386564|gb|ABN66436.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 992
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 35/249 (14%)
Query: 76 SKR-TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
SKR + +VT+ D + LL+ G+P + AP EAEAQCA L K G V + ++D D F
Sbjct: 717 SKRDSDEVTQNMITDVQELLRRFGIPYITAPMEAEAQCAELVKIGLVDGIITDDSDCFLF 776
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
G + +++ + +K V + +++++ LT I+L +L G DY + I+GIG
Sbjct: 777 GGTKVYKNMFN---QKQYVECYSQDDVVDKIGLTRKNLIELALLLGSDYTEGIKGIGPVL 833
Query: 195 ALKLIRQHGSI-------------------------ETILENINRERYQIPEDWPYQEAR 229
A++++ + GS+ + +L I + +PE +P
Sbjct: 834 AMEILAEFGSLKNFKKWFDEKTKTVKSDKKDQTALEKNLLGRIRNGKLFLPERFPDSVVF 893
Query: 230 RLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKAAKNKS 285
++ PEV D ++ + KW P+ + + +FL+ + D+V + I + + +
Sbjct: 894 DAYEHPEV--DHDRSEFKWGVPNLDQIRSFLMYNLRWTQDKVDEVMIPLIRDMNRKRTEG 951
Query: 286 SQGRLESFF 294
+Q + FF
Sbjct: 952 TQSTIGEFF 960
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
SH+ G F R +LL G+ PI+VFDG P LK++ + +R +R
Sbjct: 53 SHIVGFFRRICKLLYFGIFPIFVFDGGAPALKRETINQRRERR 95
>gi|255721529|ref|XP_002545699.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
gi|240136188|gb|EER35741.1| hypothetical protein CTRG_00480 [Candida tropicalis MYA-3404]
Length = 963
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 121/254 (47%), Gaps = 33/254 (12%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ +D + LL+ G+P + AP EAEAQCA L + G V + ++D
Sbjct: 688 REKLQKAKRDSDEVTEAMINDVQELLRRFGIPFITAPMEAEAQCAELFRIGLVDGIVTDD 747
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG + +++ D M+ +++ ++ LT + I+L +L G DY + I+
Sbjct: 748 SDCFLFGGDKIYKNMFDQKQYVECYMQDDLST---KMGLTRKKLIELALLLGSDYTEGIK 804
Query: 189 GIGGQTALKLIRQHGSI------------------------ETILENINRERYQIPEDWP 224
GIG A++++ + G + + +L I + +P+ +P
Sbjct: 805 GIGPVLAMEILAEFGDLKKFKQWFDQHTKSQVDKSNPTTLQKNLLSRIKKGNLYLPDSFP 864
Query: 225 YQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKA 280
+ PEV D ++ + KW P+ + + +FL+ ++ +V + I +
Sbjct: 865 DAIVENAYLNPEV--DSDKTKFKWGVPNLDQIRSFLMFNVSWSQTQVDEVMVPLIRDMNK 922
Query: 281 AKNKSSQGRLESFF 294
K++ +Q + FF
Sbjct: 923 RKSEGTQSTIGEFF 936
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR---ADATDDLAEAVEA 66
+SH+ G F R +LL G+ PI+VFDG P LK++ + +R +R + +T D A+ + A
Sbjct: 52 SSHIVGFFRRICKLLYFGILPIFVFDGGVPALKRKTIVQRKQRREKHSMSTKDTAQKLLA 111
Query: 67 GNKEDIEKFSKRTVKVTKQ-----HNDD 89
+++ +++TVK K+ +NDD
Sbjct: 112 IQ---LQREAEKTVKTKKRMIQIGNNDD 136
>gi|171679457|ref|XP_001904675.1| hypothetical protein [Podospora anserina S mat+]
gi|170939354|emb|CAP64582.1| unnamed protein product [Podospora anserina S mat+]
Length = 719
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 4/200 (2%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
G+ P VFDG K + + R +R + E ++AG ++ + VT +
Sbjct: 70 GVTPYLVFDGDFLPSKAKTESSREQRREQSLKTGLELLKAGKPSKAHLELQKAIDVTPEM 129
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 146
LK GVP + AP EA+AQ L + G + + SED D L FGA R L MD
Sbjct: 130 ARHLIEELKKAGVPYLVAPYEADAQLVYLEREGVISGIVSEDSDMLVFGAQRLLTK-MDQ 188
Query: 147 SSRKIPVM--EFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 204
+ + + +F + + + T +F + ILSGCDY ++ IG +TA +LIR+H +
Sbjct: 189 HGQCVEIRRKDFCLVREISLTGWTDAEFRHMAILSGCDYLGAVNNIGLKTAYRLIRKHKT 248
Query: 205 IETILENINRE-RYQIPEDW 223
E I++ + E ++++PE++
Sbjct: 249 PERIIQMLKFEGKHRVPENY 268
>gi|156555588|ref|XP_001605190.1| PREDICTED: flap endonuclease GEN-like [Nasonia vitripennis]
Length = 736
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+T+ + HL+ +F RT L + P++V +G P LK +AKR R
Sbjct: 41 VTDNIAQPKMHLRNLFFRTSYFLLHDIFPVFVLEGAAPTLKHNTIAKRNDIR-------- 92
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQ 120
+ +I+K +K+ + + +C+ +LK MG+ V+ EAEA CA L + G
Sbjct: 93 ------HGREIKKTNKKAGRSRFNYVLKECEEMLKYMGLTCVKGYGEAEAMCAYLNEDGL 146
Query: 121 VYAVASEDMDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDL 175
V S+D D L +GA R+ + ++ + E+ + KI + NL ++ I L
Sbjct: 147 VDGCISQDSDCLLYGAKIVYRNFCTSTQGNRTTSSGSIDEYSMEKIQQVFNLGRNKMIAL 206
Query: 176 CILSGCDYCDSIRGIGGQTALKLIR 200
++ GCDY + + G+G + ALKL +
Sbjct: 207 ALMCGCDYDEGLSGVGKEAALKLFK 231
>gi|348681509|gb|EGZ21325.1| hypothetical protein PHYSODRAFT_455731 [Phytophthora sojae]
Length = 502
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 121/285 (42%), Gaps = 62/285 (21%)
Query: 67 GNKEDIEKFSKRTVKVTKQHNDD----CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVY 122
G+ +++K R ++ T+ DD LL+L GVP + +P EAEAQCAAL + G V
Sbjct: 186 GDTLELKKLRSRQLRDTEGITDDMVAEVMALLRLFGVPFLVSPMEAEAQCAALEQLGLVD 245
Query: 123 AVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
V ++D D FG R +++ + V F I EL + +Q I L +L G D
Sbjct: 246 GVITDDSDIFPFGGQRVYKNIF---HHQKFVEAFSARDIERELGFSREQIIALALLLGSD 302
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILE-------------------------------- 210
Y D +RGIG A ++ + IE + E
Sbjct: 303 YTDGVRGIGIVNATEIAAAYPGIEGLREFKEWVREFDVAKEAERKTGEELDGDSEGNSEE 362
Query: 211 ---NINRERYQ-----------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 256
RER+Q + +++P ++ + + P+V D + + WSAPD L
Sbjct: 363 DDVETARERFQRSHTTVRRKWELGDEFPSKQVVQAYMSPQV--DRSEARFSWSAPDLSAL 420
Query: 257 INFLVSENGFNSDRVTKAI----EKIKAAKNKSS---QGRLESFF 294
N+ + G++ + + EK K A S Q RL+ FF
Sbjct: 421 RNYCANAFGWDQQKSDGVLLPLEEKAKKAATSGSRHIQTRLDRFF 465
>gi|342320365|gb|EGU12306.1| Hypothetical Protein RTG_01685 [Rhodotorula glutinis ATCC 204091]
Length = 751
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 25/220 (11%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATD-DLAEAVEAGNKED 71
L G+ T T G +P+ V + P +E++ A D D A +E+G
Sbjct: 321 LFGILTET-----EGRRPVVV---EKPAAVDEEISTEEILEASWPDLDPAGGIESGLGRL 372
Query: 72 IEKFSKRTVKVTKQHND---------DCKRLLKLMGVPVVEA----PSEAEAQCAALCKS 118
+ + + ++ V +HN + +++ MGVP ++ P EAE C+AL ++
Sbjct: 373 VHRST--SIAVDYKHNSFSVPAAALHKSREIIQAMGVPWLQPGPNNPFEAEGVCSALYQA 430
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 178
G V VASED D + FGAP LR+ + K P+ + ++ ++L+LT +Q +DL +L
Sbjct: 431 GLVDCVASEDTDVVVFGAP-LLRYATTTENPKNPMNVLDPVELRKQLDLTKEQLVDLALL 489
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ 218
G D+ I G+G A+ L+R++GSIE I++ + ++ Y+
Sbjct: 490 LGTDFTVRIPGLGPVAAITLMRRYGSIEAIVDVLAKKEYK 529
>gi|360043194|emb|CCD78606.1| putative xp-G/rad2 DNA repair endonuclease family member
[Schistosoma mansoni]
Length = 293
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 94/190 (49%), Gaps = 15/190 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R + LL PI V DG P LK + +R K + K +
Sbjct: 48 HLRNLFFRLVGLLRQNTLPIAVLDGVAPSLKSDVMKQRQQKWTGKI-----TTQKCTKPN 102
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ + R KV+++ C +LL G+P V++P EAEA CA L + V A + D D+
Sbjct: 103 LNRI--RFSKVSQE----CIQLLNSFGIPWVQSPGEAEAMCAFLNSNKLVDACITNDGDA 156
Query: 132 LTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 189
+GA RH MD SR V F + +IL+ LNLT + L IL GCDY S +
Sbjct: 157 FLYGAETVYRHFSMD--SRDSSVCVFHMHRILDVLNLTKCDLVLLGILLGCDYWASGVSR 214
Query: 190 IGGQTALKLI 199
+G AL+LI
Sbjct: 215 LGPVGALRLI 224
>gi|302507858|ref|XP_003015890.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
gi|291179458|gb|EFE35245.1| hypothetical protein ARB_06202 [Arthroderma benhamiae CBS 112371]
Length = 1120
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 36/236 (15%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L G V + ++D D+ FG R +++ + S
Sbjct: 794 ECQQLLRLFGLPYITAPMEAEAQCAELVALGLVDGIVTDDSDTFLFGGTRIYKNMFNQSK 853
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE E L + + L G DY + I GIG TAL+++ + +E
Sbjct: 854 ----YVECYLSSDLEKEYTLDRKKLVSFSHLLGSDYTEGIPGIGPVTALEILTEFSDLEE 909
Query: 208 ILENINRERY--QIPEDWPYQEARRLFK----------------------EPEVVTDEEQ 243
+ ++ + +IP+D P+ R+ FK EPEV +D +
Sbjct: 910 FKDWWSQVQLGNKIPDD-PHAGFRKKFKKNITKLFLPPGFPDKAVEKAYLEPEVDSDPSE 968
Query: 244 LQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFFK 295
KW PD + + FL++ G++ +R + + + N+ +Q + FF+
Sbjct: 969 F--KWGVPDLDAVRQFLMATVGWSPERTDEVLVPVIRDANRREQEGTQSNITGFFQ 1022
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
+H+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPILKRQTIA 89
>gi|347968324|ref|XP_312255.5| AGAP002669-PA [Anopheles gambiae str. PEST]
gi|333468059|gb|EAA08023.5| AGAP002669-PA [Anopheles gambiae str. PEST]
Length = 733
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 10/197 (5%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSK--RADATDDLAEAVEA--G 67
+L+ +F RT LL+ G+ P++V +G P LK + KR R +A +A
Sbjct: 38 YLRNLFFRTCYLLQTGITPVFVLEGTAPPLKYGVIVKRNQMQFRGARPKKIANCDKATVS 97
Query: 68 NKEDIEKFSKRT-VKVTKQHN--DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
+ + EK +K T K + H+ C+ LL MG+ V+AP EAEA CA L + +Y V
Sbjct: 98 STQTTEKPAKPTEQKRNRFHHVLKQCEELLSAMGLVCVQAPGEAEALCAYLNRDNLIYGV 157
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-LEELNLTMDQFIDLCILSGCDY 183
S+D D +GA R R+ S V +++ ++ L L ++ + + +LSGCDY
Sbjct: 158 ISQDSDCFAYGAVRVFRNFC-ASQNGGSVEIYDLTRVNASVLQLGQEKIVAMALLSGCDY 216
Query: 184 CDS-IRGIGGQTALKLI 199
C + + G+G + + I
Sbjct: 217 CPAGVMGVGRELVTRFI 233
>gi|307212664|gb|EFN88367.1| Flap endonuclease GEN [Harpegnathos saltator]
Length = 741
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+ + A + +L+ ++ RT LL G+ P++V +G+ PD+K + + +R++ R +
Sbjct: 41 IVDNAVQSKMYLRNLYFRTAFLLMHGISPVFVLEGKAPDIKHKTIIRRHNVRHGFCE--R 98
Query: 62 EAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQV 121
+ + G + + +CK++L+ MG+ +++ EAEA CA L + G V
Sbjct: 99 KTSKKGGRSQFNRILT-----------ECKQMLEYMGITCIQSHGEAEAMCAYLNEDGLV 147
Query: 122 YAVASEDMDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLC 176
S+D D +GA R+ + +R V + + KI + LN+ ++ I L
Sbjct: 148 DGCISQDSDCFLYGARIVYRNFCTSIQGNCGARGGSVDIYCMDKIEKILNIGRNKMIALA 207
Query: 177 ILSGCDYCDSIRGIGGQTALKLIR 200
+L GCDY + + G+G + ALK +
Sbjct: 208 LLCGCDYDEGVTGVGKEAALKFFK 231
>gi|255639461|gb|ACU20025.1| unknown [Glycine max]
Length = 287
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 18/226 (7%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA--- 66
T H++ R L G KPI VFDG +K ++ KR R D+LA AVE
Sbjct: 53 TRHIEYCMHRVNLLRHFGDKPILVFDGGLLPMKSEQENKRARAR---KDNLARAVEHESD 109
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
GN + ++ V ++ Q + ++LK + + AP EA+AQ L SGQV AV +
Sbjct: 110 GNLAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVIT 169
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGC 181
ED D + FG PR + MD + + +F+ + + + L+ + F +++CILSGC
Sbjct: 170 EDSDLIPFGCPRIIFK-MDKFGQGV---QFQDSMLQKNKELSFEGFNRQMLLEMCILSGC 225
Query: 182 DYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE 227
DY S+ G+G + A I++ S + +L+++ +P P+ E
Sbjct: 226 DYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVP---PFYE 268
>gi|410078279|ref|XP_003956721.1| hypothetical protein KAFR_0C05950 [Kazachstania africana CBS 2517]
gi|372463305|emb|CCF57586.1| hypothetical protein KAFR_0C05950 [Kazachstania africana CBS 2517]
Length = 719
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
Query: 1 MLTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
++ NE E +LQ F + IR+L++ ++P ++FDG +KK KR KR + +
Sbjct: 46 LVMNEPTE--KYLQ-FFIKKIRMLKSFNIEPYFIFDGDSIPVKKNTELKRRDKRVENKEM 102
Query: 60 LAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSG 119
AG K + F ++ V +T + K+ + V AP EA++Q L K G
Sbjct: 103 AMRLWNAGEKRNAMDFFQKCVDITPEMAKCVIEYCKINNIKYVVAPFEADSQMVYLEKKG 162
Query: 120 QVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLC 176
++ + SED D L FG + + L D I + + +++ ++ L +Q +
Sbjct: 163 LIHGIISEDSDLLIFGCKKLITKLND-YGECIEIRRDDFSRLPKKFPLGQLNDEQIRAVV 221
Query: 177 ILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 223
LSGCDY D I IG TA KL+ Q +E ++ + RE +++IP ++
Sbjct: 222 CLSGCDYTDGIPKIGLLTAFKLVNQWKQMEKVILYLQREGKWKIPANF 269
>gi|148270937|gb|ABQ53635.1| exonuclease [Cucumis melo]
Length = 336
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 11/220 (5%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA--- 66
+ H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 53 SKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKSEQEIKRARTR---KENLARATEHEMN 109
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
GN + ++ V +T + ++LK V V AP EA+AQ L S QV AV +
Sbjct: 110 GNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDAVLT 169
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL---TMDQFIDLCILSGCDY 183
ED D + FG PR + MD + + +++ + ++LNL T +++CILSGCDY
Sbjct: 170 EDSDLIPFGCPRIIFK-MDKFGQGVE-FRYDMLQKNKDLNLSGFTKQMILEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 228 LPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVSVPHLY 267
>gi|402222283|gb|EJU02350.1| PIN domain-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 636
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 20/190 (10%)
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEA--PSEAEAQCAALCKSGQVYAVASEDMDSL 132
+ KR + T + +R+L MGVP +EA P EAEA A+L +G V SED D L
Sbjct: 405 YEKRNRQPTAATYAESRRILSAMGVPCIEAEYPYEAEALAASLVINGLANYVGSEDTDVL 464
Query: 133 TFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 192
+ AP LR+L ++R++P+ + L L+ + F+D +L G D+ ++ +G
Sbjct: 465 IYEAP-LLRNL---TNRQLPLALISGTDVRNALQLSRESFVDFALLLGTDFTQRVKNLGP 520
Query: 193 QTALKLIRQHGSIETILENINRERYQIPEDWPYQE----ARRLFKEPEVVTDEEQLQIKW 248
TA+KLIR +GSIE +L ++ +Y Y E AR +F V D
Sbjct: 521 HTAIKLIRTYGSIEQLLR--SQTKYVPSSPGVYMEQIEVARLVFSTLPPVPD-------- 570
Query: 249 SAPDEEGLIN 258
SAP +EG+ +
Sbjct: 571 SAPFQEGIYD 580
>gi|448121834|ref|XP_004204307.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358349846|emb|CCE73125.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1063
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 35/236 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
D + LLK G+P + AP EAEAQCA L + G V + ++D D FG + +++ +
Sbjct: 803 DVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNMF---N 859
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
+K V + I L L+ D I+L +L G DY ++GIG A++++ + GS+E
Sbjct: 860 QKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKF 919
Query: 209 LE----NINRER----------------------YQIPEDWPYQEARRLFKEPEVVTDEE 242
E N++R + + E +P +K PEV D +
Sbjct: 920 KEWFDANVHRTKPPDKSKMTSLQKNLLNRVKNGSLYLSETFPDMVVFDAYKRPEV--DSD 977
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKAAKNKSSQGRLESFF 294
KW P+ + ++L+ G+ RV + I I K++ +Q + FF
Sbjct: 978 TTSFKWGIPNLNDIRSYLIYNVGWTQSRVDEVMVPLIRDINRKKSEGTQSTISEFF 1033
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
SH+ G F R +LL G+ P++VFDG P LKKQ +A R ++R D T+ + +
Sbjct: 53 SHIVGFFRRICKLLYYGIMPVFVFDGGAPVLKKQTIADRRARREDKTESVTDTA 106
>gi|242823476|ref|XP_002488074.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
gi|218712995|gb|EED12420.1| exonuclease, putative [Talaromyces stipitatus ATCC 10500]
Length = 767
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 111/248 (44%), Gaps = 4/248 (1%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T H+ + R LL G+ P VFDG K A R+ KR D+ E G
Sbjct: 52 TTRHVDFVLNRVRMLLFFGVTPYLVFDGGDLPSKSGTEADRFKKREDSRKLGLELQSIGR 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + ++ V VT + LK M + V AP EA+AQ L + G + + SED
Sbjct: 112 TAEAYQEFQKAVDVTPEMARQLIEELKRMKIQYVVAPYEADAQLVYLEQQGIINGIISED 171
Query: 129 MDSLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI 187
D L FGA R L L +I +F + + + F +CILSGCDY +I
Sbjct: 172 SDLLVFGARRLLSKLDQHGDCIEINRGDFAACRDISLIGWIDADFRRMCILSGCDYLSNI 231
Query: 188 RGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQL 244
+G +TA + +R++ +E +L + E YQ+P + +++A F V Q
Sbjct: 232 PKLGLKTAYRSMRKYRDVEKVLRVLQFEGHYQVPAGYLDNFRKAENTFLYQRVFCPTAQR 291
Query: 245 QIKWSAPD 252
+ + PD
Sbjct: 292 LVTLTVPD 299
>gi|125564417|gb|EAZ09797.1| hypothetical protein OsI_32084 [Oryza sativa Indica Group]
Length = 630
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 12 HLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
HL+ +F RT+ L + G P++V DGQP LK Q A R+ + + + EA
Sbjct: 54 HLRTLFFRTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASA 113
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
D R K T+ + +DC LL+ +G+PV+ A E EA CA L G V A + D D
Sbjct: 114 D-APVQPRNAKFTR-YVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSD 171
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRG 189
+ FGA ++ L S+ K P + +A I L L Q + + +L G D+ + G
Sbjct: 172 AFLFGAKTVIKVLR--SNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPG 229
Query: 190 IGGQTALKLIR 200
G +TAL+ ++
Sbjct: 230 FGPETALRFVQ 240
>gi|302789395|ref|XP_002976466.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
gi|302824817|ref|XP_002994048.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300138102|gb|EFJ04882.1| hypothetical protein SELMODRAFT_138122 [Selaginella moellendorffii]
gi|300156096|gb|EFJ22726.1| hypothetical protein SELMODRAFT_175620 [Selaginella moellendorffii]
Length = 401
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
S L R L G+KP+ VFDG +K ++ KR R + E +GN
Sbjct: 54 SFLNYCMHRVNLLRHHGIKPLLVFDGGSLPMKAEQEEKRSRAREEHLKLARECEASGNHA 113
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
++ V +T + +L+ V + +P EA+AQ A L G V AV +ED D
Sbjct: 114 AAYDHYQKAVDITPEVAHQLILVLRRENVEYIVSPYEADAQMAFLALRGVVDAVITEDSD 173
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDYCD 185
+ +G P+ L MD + + E + A +++ +L + F +++CILSGCDY
Sbjct: 174 LVAYGCPKILFK-MDKNGQGF---ELQYADLVKNRDLNLTSFTKRMMLEMCILSGCDYLP 229
Query: 186 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
S++G+G + A LIR+ S E ++ ++ IP+ +
Sbjct: 230 SLQGMGVKRAHNLIRRFRSYEKVIRHLKFSGVMIPKSY 267
>gi|397588883|gb|EJK54438.1| hypothetical protein THAOC_25932, partial [Thalassiosira oceanica]
Length = 880
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 7/231 (3%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
G+ + V DG KK+E +R ++R A D A A + +F + +T+
Sbjct: 275 GINVLLVIDGDSLPSKKEENLQRRAERDRAYDRAVAAEGARDGRAARRFYAQACSITQGI 334
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH--LM 144
+ G+P + AP EA+AQ A L +G V V +ED D L +G PR L
Sbjct: 335 KHGLIEECRGRGIPFLVAPYEADAQMARLAHTGAVDLVITEDSDMLVYGCPRVLYKADFK 394
Query: 145 DPSSRKIPVMEFEVAKILEEL-NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHG 203
++I +M + N T D F+ + ILSGCDYC + GIG + A KL+R H
Sbjct: 395 TGQGQEIQLMRDLGENVSPSFRNFTHDMFVFMAILSGCDYCKGVPGIGIKLAHKLVRVHR 454
Query: 204 SIETILENINRERYQIPEDWP--YQEARRLFKEPEVVTDEEQ-LQIKWSAP 251
+ I N R ++P D+ + +A R F+ V +Q ++ W P
Sbjct: 455 TPSKIF-NALRTAGRMPRDFEDCFWKAYRTFRHQRVFCPSKQVVEPLWPIP 504
>gi|392595001|gb|EIW84325.1| hypothetical protein CONPUDRAFT_100293 [Coniophora puteana RWD-64-598
SS2]
Length = 1485
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 40/263 (15%)
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
+T Q +L+L G+P + AP EAEAQCA L + G V V ++D D FG R +
Sbjct: 949 ITTQMISQIMLMLRLFGIPYITAPMEAEAQCAELVQLGLVEGVITDDSDVFLFGGLRVFK 1008
Query: 142 HLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201
++ + S V F ++ + EL L D + L L G DY + + G+G A++L+++
Sbjct: 1009 NMFNQSKT---VECFLLSDLARELGLERDTLVRLAYLLGSDYVEGLPGVGPVVAMELLKE 1065
Query: 202 HGSIETILE--------NINRER------------------YQIPEDWPYQEARRLFKEP 235
+ + + R+R +P +WP + R + P
Sbjct: 1066 FPGADGLHKFRDWWGKVQSGRDREADSQSKFRKRFKKKFKDLYLPPEWPNPQVRDAYYHP 1125
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRV-------TKAIEKIKAAKNKSSQG 288
V D + KW PD + L FL E + +V + + + K + + QG
Sbjct: 1126 TV--DSSREPFKWGMPDLDALREFLREELSWGQKKVDDLLLPIIQKMSRRKQSTTSNKQG 1183
Query: 289 RLESFFKPVANTS--APIKRKVY 309
L F + T AP KR+ Y
Sbjct: 1184 NLNVFLDVSSGTGSYAPRKRQAY 1206
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 7 GEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G V +H+ G R +LL G++P++VFDG P +K+ + +R K++ A A+ E
Sbjct: 49 GLVNAHVLGFLRRICKLLFYGVRPVFVFDGGAPAMKRGTIMERKRKKSGAAASHAKVAE 107
>gi|284504378|ref|YP_003407093.1| flap-specific endonuclease [Marseillevirus]
gi|282935816|gb|ADB04131.1| flap-specific endonuclease [Marseillevirus]
Length = 362
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 29/217 (13%)
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
E + ++K++ +T + + K LL ++GV V A EA+ ++ G+++A S D
Sbjct: 151 ESLSTYAKQSTPLTNERVESVKNLLDILGVRYVSAKGEADGVLSSYVIKGKLFAACSADT 210
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD---- 185
D +G P F +D SS ++ E + LE+L LT +QF+DLCI+ GCDY D
Sbjct: 211 DVHAYGVP-FAIPDVDTSSETFTLVHRE--QYLEDLGLTEEQFLDLCIMCGCDYNDRASQ 267
Query: 186 -------SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPE 236
RGIG +TAL LIR++GS+E I E+ + P Y+ R L K E
Sbjct: 268 EAKTAGKKARGIGWKTALSLIRKYGSLEEI------EKIPGVDVGPLNYKRCRELLKVQE 321
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENG--FNSDRV 271
V DE K P+ E L NF ENG F+ D V
Sbjct: 322 QV-DEIPPGGK---PNREDLENFF-QENGARFDVDYV 353
>gi|281212257|gb|EFA86417.1| xeroderma pigmentosum group G family protein [Polysphondylium
pallidum PN500]
Length = 1515
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 56/225 (24%)
Query: 80 VKVTKQHNDD----CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
+K K +DD C LL L G+P + +P+EAEAQCA L G + V +ED D+L FG
Sbjct: 992 IKSIKTIDDDILRECHDLLSLFGIPFITSPTEAEAQCAELFALGLIDGVVTEDSDTLLFG 1051
Query: 136 APRFL---RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGG 192
+ RHL + + ++ I + + + D I+L +L GCDY ++GIG
Sbjct: 1052 KSSDMVVYRHLFQQPEK------YCMSDIEKTIGVNRDDLINLAMLLGCDYTAGVKGIGI 1105
Query: 193 QTALKLIRQHGSIETI--------------------------------LENINRERY--- 217
A+++I + ++E L+ N ERY
Sbjct: 1106 VNAMEIISEFDTLEEFAKFIRKDYGSGKKSSRDKDKDGDKDKDENDEDLDIFNEERYRFK 1165
Query: 218 ------QIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGL 256
++P+ +P ++ R F+ P+V E+ WS PD + L
Sbjct: 1166 TLLKNIKLPDSFPSEQVRLAFQSPDVNLSSEEFT--WSCPDLDSL 1208
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
+HL G F R +LL+ +KPI+VFDG P LK++ + +R +R ++
Sbjct: 92 NAHLLGFFWRICKLLQHRIKPIFVFDGNIPYLKQRTINERRKRRENS 138
>gi|440803854|gb|ELR24737.1| XPG Iregion domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 832
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 28 MKPIYVFDGQP-PDLKKQELAKR----------------YSKRADATDDLAEAVEAGNKE 70
+ P+ VFDG P K QE +R KR + AE ++ GN+
Sbjct: 23 ITPVLVFDGGALPSKKGQEEKRRKYFSPPPAILPTACEFVGKRREERAKAAEYLQQGNRT 82
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
++ V +T + + L+ G+ + AP EA+AQ A L +G V++V SED D
Sbjct: 83 AANDCYRKAVDITPRMAHKLIKALQAEGIECIVAPYEADAQLAFLSHTGYVHSVISEDSD 142
Query: 131 SLTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRG 189
L FG R L + D + ++I + + L N T D F +CILSGCDY SI G
Sbjct: 143 LLPFGCKRVLFKMDGDGNGKEIQLSDLGQNTPLRFHNFTHDMFRQMCILSGCDYLASITG 202
Query: 190 IGGQTALKLIRQHGSIETILENINRER-YQIPEDW--PYQEARRLF 232
+G + A L+ ++ +++ + + +R + +P ++ ++ A R F
Sbjct: 203 LGVKKAHGLLNKYRTMDRVFRFLKNDRSFIVPPEYEEAFERAERTF 248
>gi|392589296|gb|EIW78627.1| PIN domain-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 318
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 9/218 (4%)
Query: 21 IRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 79
+RLL+ ++P VFDG P K+ ++R +R + G +F +
Sbjct: 63 VRLLKHHKIQPYIVFDGGPLPAKRGTESERKQRRDENLARANALAAQGKHTQAREFYLKC 122
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
V VT Q + L+ VP V AP EA+AQ A L ++G V + +ED D L FG
Sbjct: 123 VDVTPQMAFQLIKALRAEAVPYVVAPYEADAQLAYLERTGLVDGIITEDSDLLVFGCKHV 182
Query: 140 LRHLMDPSSRKIPVMEFEVAKILEELNLTM-----DQFIDLCILSGCDYCDSIRGIGGQT 194
L L + I + + + + +++ QF + ILSGCDY SI GIG +T
Sbjct: 183 LFKLDAVACTLISIQRKDFGSVTDAGGVSLVGWNDAQFRAMAILSGCDYLPSIPGIGLKT 242
Query: 195 ALKLIRQHGSIETILENINRERYQ-IPEDWPYQEARRL 231
A L+R+H +++ ++ + ER + +P + Y E+ RL
Sbjct: 243 AATLLRRHRTVDQVVRALRFERKKNVP--YNYIESFRL 278
>gi|448530440|ref|XP_003870064.1| Rad2 protein [Candida orthopsilosis Co 90-125]
gi|380354418|emb|CCG23933.1| Rad2 protein [Candida orthopsilosis]
Length = 995
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 122/255 (47%), Gaps = 34/255 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+E ++K + + +VT+ D + LLK G+P + AP EAEAQCA L + G V + ++D
Sbjct: 716 QEKLQKAKRDSDEVTENMISDVQELLKRFGIPYITAPMEAEAQCAELFRIGLVDGIITDD 775
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIR 188
D FG R +++ + +K V + I + + L+ + I+L IL G DY I+
Sbjct: 776 SDCFLFGGDRIYKNMFN---QKQFVECYFKDDIEDRIGLSRENLIELAILLGSDYTQGIK 832
Query: 189 GIGGQTALKLIRQHGSIE-------------------------TILENINRERYQIPEDW 223
GIG A++++ + GS++ + I + +P+++
Sbjct: 833 GIGPVLAVEILAEFGSLKRFKSWFDEKTKTTKLDQVTLTPLQRNLTNRIKNGKLYLPDNF 892
Query: 224 PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIK 279
P + ++ PEV D ++ + KW P+ + + +FL+ ++ +RV + + +
Sbjct: 893 PDKVIFEAYQHPEV--DSDKSEFKWGIPNLDQIRSFLMYNVNWSQERVDEVMVPLVRDLN 950
Query: 280 AAKNKSSQGRLESFF 294
+ + +Q + FF
Sbjct: 951 KKRAEGTQSTIGEFF 965
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
SH+ G F R +LL G++PI+VFDG P LK+Q + +R ++R ++ E +
Sbjct: 53 SHIVGFFRRICKLLYFGIQPIFVFDGGVPVLKRQTINERKNRRQQNSESTRETAQ 107
>gi|366999787|ref|XP_003684629.1| hypothetical protein TPHA_0C00380 [Tetrapisispora phaffii CBS 4417]
gi|357522926|emb|CCE62195.1| hypothetical protein TPHA_0C00380 [Tetrapisispora phaffii CBS 4417]
Length = 784
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 24/217 (11%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+LQ + L ++P VFDG +KKQ KR KR + + +G + +
Sbjct: 55 YLQFFIKKFAMLKSYNIQPYLVFDGNSLPVKKQTEVKRKEKRTENRSIAIKLWNSGERRN 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
++ +++V VT + KL G+ V AP EA+ Q L K V+ + SED D
Sbjct: 115 AMEYFQKSVDVTPEMAKCVIDYCKLHGIKYVVAPYEADPQLVYLEKHKIVHGIISEDSDL 174
Query: 132 LTFGAPRFLRHLMD-------------PSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 178
L FG + + L D +K P+ E LT DQ + L
Sbjct: 175 LVFGCRKLITKLNDFGECIEICRDNFNQVPKKFPIYE-----------LTDDQIRVMVCL 223
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE 215
SGCDY D I IG A+KL+RQH +++ I+ + RE
Sbjct: 224 SGCDYTDGILKIGLIRAIKLVRQHKTMDKIILALQRE 260
>gi|347833577|emb|CCD49274.1| similar to DNA excision repair protein [Botryotinia fuckeliana]
Length = 1341
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 121/241 (50%), Gaps = 40/241 (16%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L + G V + ++D D FG R ++L + +
Sbjct: 936 ECQALLRLFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDIFLFGGTRVYKNLFNSNK 995
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ---HGS 204
++E ++ LE EL+L+ +Q I + L G DY + I GIG TA++++ + H
Sbjct: 996 ----LVECYLSSDLEKELSLSREQLISIAHLLGSDYTEGIPGIGPVTAVEILSEFPSHAG 1051
Query: 205 IE------TILEN------------INRERYQ--------IPEDWPYQEARRLFKEPEVV 238
+E ++++N + R++++ +P +P Q + +P+V
Sbjct: 1052 LEEFKEWWSLVQNPLTTLPLASEPTLFRKKFRRSQATKLFLPPAFPSQAVTEAYLKPDVD 1111
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 294
+ E Q W PD L FL++ G++ +RV + I + + + +Q + +F
Sbjct: 1112 STAEAFQ--WGVPDLGQLREFLMATVGWSQERVDEILVPVIRDMNRRETEGTQSNITRYF 1169
Query: 295 K 295
+
Sbjct: 1170 E 1170
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQ 44
SH+ G F R +LL G+KP++VFDG P LK+Q
Sbjct: 52 NSHIVGFFRRICKLLFHGIKPVFVFDGGAPILKRQ 86
>gi|301121670|ref|XP_002908562.1| DNA repair protein, putative [Phytophthora infestans T30-4]
gi|262103593|gb|EEY61645.1| DNA repair protein, putative [Phytophthora infestans T30-4]
Length = 483
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 119/267 (44%), Gaps = 54/267 (20%)
Query: 71 DIEKFSKRTVKVTKQHNDD----CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
D++K R ++ + DD LL+L GVP + +P EAEAQCAAL + G V V +
Sbjct: 176 DLKKLRSRQLRDAEGITDDMVAEVMSLLRLFGVPFLVSPMEAEAQCAALEQLGLVDGVIT 235
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
+D D FG R +++ + V F I +EL + +Q I L +L G DY D
Sbjct: 236 DDSDIFPFGGQRVYKNIF---HHQKFVEAFSARDIEQELGFSREQIIALALLLGSDYTDG 292
Query: 187 IRGIGGQTALKLIRQHGSIETILE--------NIN----------------------RER 216
+RGIG A ++ + IE + E N+ RER
Sbjct: 293 VRGIGIVNATEIAAAYPKIEGLREFKDWVGEFNVAEEAQRGKEDESGGDSDSEDETVRER 352
Query: 217 YQ-----------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENG 265
+Q + +++P ++ + + P+V D + WSAPD L N+ G
Sbjct: 353 FQRSHATARRKWELGDEFPSKQVVQAYMSPQV--DRSDARFSWSAPDVASLRNYCAKAFG 410
Query: 266 FN---SDRVTKAIEKIKAAKNKSSQGR 289
++ SD V K +E+ KA +S GR
Sbjct: 411 WDQQKSDGVLKPLEE-KARDAAASGGR 436
>gi|71423277|ref|XP_812404.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70877180|gb|EAN90553.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 760
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN---- 68
LQ + R +L G+ P+ VFDG P +K+ A+R RA + + ++ G
Sbjct: 78 LQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQMLRAARLAEALQVLKQGGPSNP 137
Query: 69 --KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
+++ + ++ + +T + ++LK + + AP EA+AQ A LCK G V AV S
Sbjct: 138 RARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAPYEADAQLAYLCKEGYVQAVVS 197
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
ED D + + P + L ++ + ++ + L+ + F+ CILSGCDY S
Sbjct: 198 EDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFYGLSYESFLVGCILSGCDYLPS 256
Query: 187 IRGIGGQTALKLIRQHGSIETILENI 212
+R IG + A +L+ Q S+ +I+ ++
Sbjct: 257 LRHIGVKKAFRLVAQATSVPSIMRSL 282
>gi|71413355|ref|XP_808820.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873103|gb|EAN86969.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 762
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN---- 68
LQ + R +L G+ P+ VFDG P +K+ A+R RA + + ++ G
Sbjct: 78 LQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQMLRAARLAEALQVLKQGGPSNP 137
Query: 69 --KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
+++ + ++ + +T + ++LK + + AP EA+AQ A LCK G V AV S
Sbjct: 138 RARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAPYEADAQLAYLCKEGYVQAVVS 197
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
ED D + + P + L ++ + ++ + L+ + F+ CILSGCDY S
Sbjct: 198 EDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFYGLSYESFLVGCILSGCDYLPS 256
Query: 187 IRGIGGQTALKLIRQHGSIETILENI 212
+R IG + A +L+ Q S+ +I+ ++
Sbjct: 257 LRHIGVKKAFRLVAQATSVPSIMRSL 282
>gi|145493760|ref|XP_001432875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399990|emb|CAK65478.1| unnamed protein product [Paramecium tetraurelia]
Length = 553
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 29/232 (12%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA--EAVEAGNK 69
++Q M I L E + PI +FDG+ +L+ +E ++ K+ + L E E+GN
Sbjct: 58 YVQKML---IMLKEYEITPILIFDGR--NLRAKEKTEQMRKQIKQQNLLKAKELQESGNT 112
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
E+ +++ +R +K+ KQ +L+ + V + AP EA+AQ A +C SGQ +ED
Sbjct: 113 EEAKRYYQRCLKIRKQMMYTTFDVLRELEVQYIIAPYEADAQIAHMCLSGQCDFAITEDS 172
Query: 130 DSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE---------------LNLTMDQFID 174
D + + P + L + E E+ K+ E L +Q ID
Sbjct: 173 DLICYQCPLIVFKLQSNGA----CFELELQKLRESRQNRAHIKSDDIRQFLAFKNEQLID 228
Query: 175 LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERY---QIPEDW 223
+CI+SGCDY SIRG+G + A+ + ++ I + + + + +IPE++
Sbjct: 229 VCIMSGCDYVPSIRGMGIKKAIDYMSKYDDISNTISKLKKAKQFNGKIPEEY 280
>gi|115390695|ref|XP_001212852.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
gi|114193776|gb|EAU35476.1| hypothetical protein ATEG_03674 [Aspergillus terreus NIH2624]
Length = 1131
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL L G+P + AP EAEAQCA L G V + ++D D FG R +++ + S
Sbjct: 829 ECQQLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVYKNMFNQSK 888
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
V + + + +E L + I L G DY + I G+G TAL+++ + S+E
Sbjct: 889 F---VECYLTSDLEKEYALHRRKLISFAHLLGSDYTEGIPGVGPVTALEILTEFSSLEEF 945
Query: 209 LE---------NINRERYQ--------------IPEDWPYQEARRLFKEPEVVTDEEQLQ 245
+ N N + +P +P + EPEV +D Q
Sbjct: 946 RDWWSQVQMGMNANDGSHAAFYKKFKKQASKIFLPPAFPDPRVDVAYLEPEVDSDPSPFQ 1005
Query: 246 IKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
W PD GL N+L++ G++ +R + I + + + +Q + SFF+
Sbjct: 1006 --WGVPDLHGLRNYLMATIGWSQERTDEVLVPVIRDMNRREQEGTQSNITSFFQ 1057
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 52 NSHVVGFFRRICKLLFFGIKPVFVFDGGAPILKRQTIA 89
>gi|425781231|gb|EKV19207.1| Exonuclease, putative [Penicillium digitatum PHI26]
gi|425783409|gb|EKV21262.1| Exonuclease, putative [Penicillium digitatum Pd1]
Length = 673
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 8/244 (3%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKV 82
LL G+KP VFDG K RY +R ++ E G + + ++ V V
Sbjct: 2 LLFFGVKPYLVFDGDNLPSKAGTEQDRYKRRQESKTLGLELQRKGKMPEAYQEFQKAVDV 61
Query: 83 TKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH 142
T LK M V V AP EA+AQ L + G ++ + SED D L FGA R +
Sbjct: 62 TPYMARQLIEELKQMNVQYVVAPYEADAQLVYLEQQGDIHGIISEDSDLLVFGAKRLISK 121
Query: 143 LMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
L D I + +F + + + + F ++CILSGCDY +I +G +TA ++IR
Sbjct: 122 L-DQHGECIEINRADFTACREVNLVGFSDPDFRNMCILSGCDYLANIPKLGLKTAYRIIR 180
Query: 201 QHGSIETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLI 257
+H ++E L + + +++P D+ +++A F V + + + + PD++ +
Sbjct: 181 KHRNVEKALRMLQFDGNFRVPADYLANFKQAELTFLYQRVFCRKAEKLVTLTLPDDD--V 238
Query: 258 NFLV 261
N V
Sbjct: 239 NLAV 242
>gi|75288736|sp|Q64MA3.1|GENL1_ORYSJ RecName: Full=Flap endonuclease GEN-like 1; Short=OsGEN-L;
Short=Protein OsGEN-like; AltName: Full=OsRAD
gi|52075592|dbj|BAD46702.1| putative single-strand DNA endonuclease-1 [Oryza sativa Japonica
Group]
gi|62122402|dbj|BAD93194.1| putative nuclease [Oryza sativa Japonica Group]
gi|62122736|dbj|BAD93331.1| putative nuclease [Oryza sativa Japonica Group]
gi|215693373|dbj|BAG88755.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630495|gb|EEE62627.1| hypothetical protein OsJ_17430 [Oryza sativa Japonica Group]
Length = 629
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 12 HLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
HL+ +F RT+ L + G P++V DGQP LK Q A R+ + + + EA
Sbjct: 54 HLRTLFFRTLSLFSKMGAFPVFVVDGQPSPLKSQVRAARFFRGSGMDLAALPSTEAEASA 113
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
D R K T+ + +DC LL+ +G+PV+ A E EA CA L G V A + D D
Sbjct: 114 D-ALVQPRNAKFTR-YVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSD 171
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRG 189
+ FGA ++ L S+ K P + +A I L L Q + + +L G D+ + G
Sbjct: 172 AFLFGAKTVIKVLR--SNCKEPFECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPG 229
Query: 190 IGGQTALKLIR 200
G +TAL+ ++
Sbjct: 230 FGPETALRFVQ 240
>gi|405969706|gb|EKC34660.1| Flap endonuclease GEN-like protein 1 [Crassostrea gigas]
Length = 955
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 16/190 (8%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+L+ +F R LL+ G+ ++V +G+ PDLK+Q +AKR R + + G
Sbjct: 52 YLRNLFFRISHLLQLGVHLVFVIEGRAPDLKQQVMAKRQETRFPQRKAVGGQRQGG---- 107
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+R + +C +L +GVP V +P EAEA CAAL SG V A + D D+
Sbjct: 108 -----RRNFNACLK---ECCEMLDYLGVPYVHSPGEAEATCAALNASGVVDACLTNDGDA 159
Query: 132 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRG 189
+GA R+ + K P +E + + + E L L+ ++ + + +L GCDY + G
Sbjct: 160 FLYGARTVYRNFT--MNTKDPHVECYCMTDVEERLGLSREKLVAMALLLGCDYLPKGVPG 217
Query: 190 IGGQTALKLI 199
+G + A+K++
Sbjct: 218 VGVERAIKMM 227
>gi|326437161|gb|EGD82731.1| hypothetical protein PTSG_03380 [Salpingoeca sp. ATCC 50818]
Length = 531
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 23/224 (10%)
Query: 16 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKF 75
+F R L AG+ P+ VFDG P K +E A+R +R A ++ + + G + K
Sbjct: 59 VFKRLALLTTAGITPVVVFDGAPLAAKAEENARRQRQRKAAREEALKLRKQGKVHEARKA 118
Query: 76 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
S+R + V++ +L + + V AP EA+AQ A + ++G+V AV S+D D L FG
Sbjct: 119 SRRALHVSRDMQRTLMAMLDRLNIEYVVAPYEADAQLAFMARTGRVAAVLSDDSDMLCFG 178
Query: 136 APRFLRHLMDPSSRKIPVMEFEVAKILEELNLT------------MDQFIDLCILSGCDY 183
P LR+L SS ++F L+EL LT +D +LSGCDY
Sbjct: 179 VPHVLRNLR--SSGTCDSIQFH---HLQELTLTRYGVRLSLRDLRLDTLQLAAVLSGCDY 233
Query: 184 CD-----SIRGIGGQTALKLIRQHGSIETILENINRERYQIPED 222
I GIG +TA+ + ++ + I++++ R+ Y I +D
Sbjct: 234 LPKHSGAHIHGIGMRTAMYVTHKYKTYTDIMQHL-RQNYIITDD 276
>gi|302845188|ref|XP_002954133.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
gi|300260632|gb|EFJ44850.1| hypothetical protein VOLCADRAFT_82613 [Volvox carteri f.
nagariensis]
Length = 254
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 22/216 (10%)
Query: 2 LTNEAGEV--TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
+ +E G++ +HL G F R RLL ++P++VFDG P LK+ A
Sbjct: 4 MRDEKGDMMRNAHLLGFFRRICRLLFHRVRPVFVFDGATPALKRHT--------NIARRR 55
Query: 60 LAEAVEAGNKEDIEKFSKRTVKVTKQHN-------DDCKRLLKLMGVPVVEAPSEAEAQC 112
EA + ++ EK ++ KQ N + L GVP V P+ AEAQC
Sbjct: 56 RREAQQGVLRKTAEKLL--IAQLKKQRNVGMPLKLNVAIPLAAFKGVPTVSEPAAAEAQC 113
Query: 113 AALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF 172
A L SG V V ++D D FGA RH+ + K V E++++ + EL LT ++
Sbjct: 114 AFLEVSGLVDGVVTDDNDVFLFGARHVYRHIFE---NKKYVEEYQMSDVERELGLTRERL 170
Query: 173 IDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 208
++ +L G DY + GIG A+++++ +E +
Sbjct: 171 AEMALLLGSDYTEGCGGIGIVNAVEVVQAFPGLEGL 206
>gi|119468577|ref|XP_001257869.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
gi|119406021|gb|EAW15972.1| DNA excision repair protein Rad2 [Neosartorya fischeri NRRL 181]
Length = 1132
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 31/240 (12%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 796 EVTQVMITECQQLLSLFGLPYITAPMEAEAQCAELVSLGLVDGIITDDSDIFLFGGTRVY 855
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + V + + + +E L + I L L G DY + I GIG TAL+++
Sbjct: 856 KNMFNQGKF---VECYLTSDMEKEYALHRRKLISLAHLLGSDYTEGISGIGPVTALEILT 912
Query: 201 QHGSIETILE---NINRERYQ-------------------IPEDWPYQEARRLFKEPEVV 238
+ S++ + I Y IP +P + + + EP V
Sbjct: 913 EFSSLQEFRDWWTQIQTGMYVPETHAAFYRKFKKTATKIFIPPTFPDPQVDKAYLEPVVD 972
Query: 239 TDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAKNKSSQGRLESFF 294
+D Q W PD GL NFL++ G++ +R + I + + + +Q + +FF
Sbjct: 973 SDPSPFQ--WGVPDLHGLRNFLMTTIGWSQERTDEVLLPVIRDMNRREQEGTQSNITNFF 1030
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELA 47
SH+ G F R +LL G+KP++VFDG P LK+Q +A
Sbjct: 53 SHIVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTIA 89
>gi|255562588|ref|XP_002522300.1| exonuclease, putative [Ricinus communis]
gi|223538553|gb|EEF40158.1| exonuclease, putative [Ricinus communis]
Length = 629
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 9/214 (4%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+Q R L G+KPI VFDG +K ++ KR R + E GN
Sbjct: 25 HIQYCMHRVNLLRHYGVKPILVFDGGLLPMKSEQENKRARSRKENLSRAIEHEANGNSAA 84
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ ++ V ++ + + LK V V AP EA+AQ L S QV AV +ED D
Sbjct: 85 AYECYQKAVDISPSIAHELIQALKQENVSYVVAPYEADAQMTFLAISKQVDAVITEDSDL 144
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-----LEELNLTMDQFIDLCILSGCDYCDS 186
+ FG PR + MD + I EF+ +++ L T + + +CILSGCDY S
Sbjct: 145 IPFGCPRIV-FKMDKYGQGI---EFQYSRLQLNKELSFSGFTHEMILQMCILSGCDYLQS 200
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIP 220
+ G+G + A LI + S + +++++ +P
Sbjct: 201 LPGMGLKRAHALITKFKSYDKVIKHLKYSTISVP 234
>gi|347972009|ref|XP_313789.5| AGAP004491-PA [Anopheles gambiae str. PEST]
gi|333469129|gb|EAA09057.6| AGAP004491-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+Q LL +KPI VFDGQ K AKR R A AE + G ++
Sbjct: 55 HIQYCLKYVQLLLSHNIKPILVFDGQHLPAKAATEAKRREIRETARKRGAELLRLGRIDE 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
F +R V +T + + + GV + AP EA+AQ A L ++ V +ED D
Sbjct: 115 ARSFLRRCVDITHEMALQLMQECRKRGVDCIVAPYEADAQLAYLNRTDIAQYVITEDSDL 174
Query: 132 LTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
+ FG R L L + R + + +A E +F +CILSGCDY DS+ GI
Sbjct: 175 VLFGCNRILFKLDLTGHGRLVEASKLHLAMGCREDRYKFAKFRYMCILSGCDYLDSLPGI 234
Query: 191 GGQTALKLIRQ------HGSIETILENINRERYQIPEDWP--YQEARRLFKEPEVVTDEE 242
G A K + + ++ I +N + + E++ + +A FK V +
Sbjct: 235 GLGKACKFMLKTEDPDIRRALAKIPAYLNMRQLSVTEEYKDEFLKADATFKHMVVYDPVQ 294
Query: 243 QLQIKWSAPDEEG 255
+ Q + PD+EG
Sbjct: 295 RRQTRLVDPDDEG 307
>gi|389641011|ref|XP_003718138.1| exonuclease 1 [Magnaporthe oryzae 70-15]
gi|351640691|gb|EHA48554.1| exonuclease 1 [Magnaporthe oryzae 70-15]
gi|440475111|gb|ELQ43812.1| exonuclease 1 [Magnaporthe oryzae Y34]
gi|440490176|gb|ELQ69760.1| exonuclease 1 [Magnaporthe oryzae P131]
Length = 780
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 6/230 (2%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
G P VFDG K A R +R ++ E ++AG + ++ + VT +
Sbjct: 70 GATPYIVFDGDFLPSKALTEASRAKRREESKKAGMELLKAGKPAQAYQEFQKAIDVTPEM 129
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 146
+ LK + VP V AP EA+AQ L ++G V + SED D L FGA R L L D
Sbjct: 130 ARELIEELKKIDVPYVVAPYEADAQMVYLERNGYVSGIISEDSDLLVFGAKRLLTKL-DQ 188
Query: 147 SSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 204
+ I V EF + + T +F + I SGCDY D I +G +TA ++IR+H +
Sbjct: 189 HGQCIEVNRREFCAVREISLTGWTDAEFRQMAIFSGCDYLDGINKMGLKTAYRMIRKHKT 248
Query: 205 IETILENINRE-RYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIKWSAP 251
E ++ + E +++I E++ +++A F V E+Q + + P
Sbjct: 249 PEKVIRQLQFEGKHKISENYLAAFKQAELTFMHQRVFCPEKQELVLLTEP 298
>gi|302678719|ref|XP_003029042.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
gi|300102731|gb|EFI94139.1| hypothetical protein SCHCODRAFT_17178 [Schizophyllum commune H4-8]
Length = 316
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 105/227 (46%), Gaps = 7/227 (3%)
Query: 7 GEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G+ T F +R+L G++P VFDG P KK +R KR ++
Sbjct: 49 GKETHKYIDYFMHRVRMLRHNGVEPYIVFDGGPLPAKKGTENERRQKREESLARANMLAA 108
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
G + V VT + + L++ V V AP EA+AQ A L ++G V+A+
Sbjct: 109 QGKHSQARDHYLKCVDVTPEMAYQVIKALRVENVKYVVAPYEADAQMAFLERTGAVHAIL 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-----LEELNLTMDQFIDLCILSG 180
+ED D L FG L L + + + A + + + T QF + ILSG
Sbjct: 169 TEDSDLLVFGCKNVLFKLDHAQCTVVSISRSDFASVTACDGVSLVGWTDAQFRTMAILSG 228
Query: 181 CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQ 226
CDY SI GIG +TA +R+H + E ++ I RE + +IP + Q
Sbjct: 229 CDYLPSIPGIGLKTAAVYVRKHKTAEQCVKAIAREGKKRIPMGYVSQ 275
>gi|156395868|ref|XP_001637332.1| predicted protein [Nematostella vectensis]
gi|156224443|gb|EDO45269.1| predicted protein [Nematostella vectensis]
Length = 250
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 18/197 (9%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
+HL +F R +LL +KP++VFDG P LKK+ L + Y L E N+E
Sbjct: 53 AHLFVLFHRLCKLLFYRVKPVFVFDGGVPVLKKKTLVRAY---------LEEMQTNLNRE 103
Query: 71 DIEKFSKR------TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
S+R + +V+ + ++ + LL+L GVP + +P EAEAQCA L +GQ
Sbjct: 104 QRTLQSERARQARASAEVSTEMLNESQELLRLFGVPFLVSPMEAEAQCAFLDMTGQTDGT 163
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 184
++D D FG R +++ + + + I + L L+ + I L ++G DY
Sbjct: 164 ITDDSDVFLFGGRRVYKNIFNQNKHAEC---YTCEDIDKGLALSRSKMIKLAFVTGSDYT 220
Query: 185 DSIRGIGGQTALKLIRQ 201
+ I+G+G +A++++ +
Sbjct: 221 EGIQGLGAVSAMEVLHE 237
>gi|344228751|gb|EGV60637.1| hypothetical protein CANTEDRAFT_132346 [Candida tenuis ATCC 10573]
Length = 960
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 106/218 (48%), Gaps = 28/218 (12%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +D + LL+ G+P + AP EAEAQC L K G V + ++D D+ FG R
Sbjct: 692 EVTQAMINDVQELLRRFGIPFLTAPMEAEAQCVELLKLGLVDGIVTDDSDTFLFGGDRVY 751
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + +K V + + +L L+ ++ I+L +L G DY + ++GIG A++++
Sbjct: 752 KNMFN---QKQFVECYLSEDVSGKLGLSQEKLIELGLLLGSDYTEGVKGIGPVLAMEILA 808
Query: 201 QHGSI-----------------------ETILENINRERYQIPEDWPYQEARRLFKEPEV 237
+ GS+ + +L I + +P +P + PEV
Sbjct: 809 EFGSLHQFKEWFDDCNLRAKNDSSSSLKKNLLNRIKNSKLFLPPSFPDSVVFDAYIHPEV 868
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
D + IKW PD + + +FL+ G++ RV + +
Sbjct: 869 --DHSKDPIKWGVPDLDSIRSFLMYNVGWSQGRVDEVM 904
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNK 69
+SH+ G F R +LL G++P+++FDG P LK+ + KR +R +D +E
Sbjct: 52 SSHIVGFFRRICKLLYFGIQPVFIFDGGAPALKRDTIKKRKERRDGKREDASETAHRL-- 109
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMG 98
+ ++R V+ K++NDD L L G
Sbjct: 110 --LAIHAQRRVQQPKENNDDTVYLEDLPG 136
>gi|401409161|ref|XP_003884029.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
gi|325118446|emb|CBZ53997.1| putative RAD2 endonuclease [Neospora caninum Liverpool]
Length = 1924
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 37/252 (14%)
Query: 75 FSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTF 134
++T VT++ D LL+ GVP V AP EAEA A AV S+D D+L F
Sbjct: 1420 LQQQTGNVTERMKDQVVALLRAFGVPFVTAPGEAEATAAYFTAQNLADAVISDDSDALVF 1479
Query: 135 GAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQT 194
GA R+ + K V +E + I +L L Q I L +L GCDY ++GIG
Sbjct: 1480 GAREIYRNFFE---NKKSVEMYEASFIAHKLGLDQQQLILLAMLLGCDYTLGVKGIGIVN 1536
Query: 195 ALKLIRQHGSIETI--------------LENIN--------------RERYQIPEDWPYQ 226
A++++R + S++ + +E + R ++ P D+P
Sbjct: 1537 AVEVLRAYPSLDALRAFRAWAEAPWTLGIEAADSAEVRKYKEAHKNYRLQWLFPHDFPSP 1596
Query: 227 EARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTK----AIEKIKAAK 282
E F+ P + D + W+ PD E +++ + G V A+++ AA
Sbjct: 1597 EVFDAFESP--LVDRSREPFSWAVPDVEAIVSIMTHAGGLRRSEVLDCLLPAVKRYTAAH 1654
Query: 283 NKSSQGRLESFF 294
Q R+ +F
Sbjct: 1655 AFQRQTRITAFL 1666
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKR 53
+HL G F R RLL ++PI VFDG PP LK+Q L R +R
Sbjct: 53 AHLVGFFNRLCRLLFFEIRPIIVFDGPPPFLKRQTLLARKRQR 95
>gi|260796605|ref|XP_002593295.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
gi|229278519|gb|EEN49306.1| hypothetical protein BRAFLDRAFT_123641 [Branchiostoma floridae]
Length = 790
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 17/220 (7%)
Query: 6 AGEVT-SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
G VT HL+ +F R L + G+ I+V DG+PP+LK Q + KR R +
Sbjct: 45 TGAVTRPHLRNLFFRVSHLTKMGVGLIFVVDGEPPELKFQTMMKRNQDRFWGS------- 97
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
+ G K+ + K K K +C LL +G+P V++ EAEA CA L + V
Sbjct: 98 KTGQKKGLGKPKKMKRSHFKAILKECILLLDGLGIPHVQSKGEAEAFCALLNRESLVDGC 157
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDY 183
++D D+ +GA R+L +K P ++ ++++ I E+L L ++ + L +L GCDY
Sbjct: 158 LTDDGDAFLYGARTVYRNLT--LDKKDPHVDCYQMSDIEEKLLLDRNKLVGLALLLGCDY 215
Query: 184 C-DSIRGIGGQTALKLIRQHGSIET--ILENINRERYQIP 220
C + G+G + A++++ ++ET +LE R + P
Sbjct: 216 CPKGVPGVGKELAVRVMT---ALETCDVLERFKVWRSETP 252
>gi|392562036|gb|EIW55217.1| PIN domain-like protein [Trametes versicolor FP-101664 SS1]
Length = 525
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 96/191 (50%), Gaps = 9/191 (4%)
Query: 60 LAEAVEAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV--EAPSEAEAQCAALCK 117
LAE +E + E + +RT T + + K +L+ MGVP + P EAEA A+L
Sbjct: 294 LAEELETKSSLLSESYDRRTHPPTSETYEQSKEILQAMGVPYITPSGPFEAEALAASLVI 353
Query: 118 SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCI 177
G VASED D L + AP +R++ S P++ A + L L +ID +
Sbjct: 354 HGYADYVASEDTDVLVYEAP-LIRNITSSSG---PLVLISGADVRTVLQLDRPGYIDFAL 409
Query: 178 LSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQE---ARRLFKE 234
L G D+ I+ +G ALK IR+HGSIE +LE+ + +IP+ Q+ AR +F+
Sbjct: 410 LLGTDFSQRIKNVGPARALKFIREHGSIERVLEHERQYPPRIPKAEYLQQVQLARDVFQT 469
Query: 235 PEVVTDEEQLQ 245
D LQ
Sbjct: 470 LPPTPDRALLQ 480
>gi|367044124|ref|XP_003652442.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
gi|346999704|gb|AEO66106.1| hypothetical protein THITE_2113945 [Thielavia terrestris NRRL 8126]
Length = 1226
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 39/255 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + V + ++D D FG R
Sbjct: 866 EVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVRLNLVDGIVTDDSDIFLFGGTRVY 925
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E +A LE EL+L+ +Q I L L G DY + + G+G TAL+++
Sbjct: 926 KNVFNSNK----YVECYLATDLETELSLSREQLISLAQLLGSDYTEGLPGVGPVTALEIL 981
Query: 200 RQHGSIETILE-------NINRERYQ---------------------IPEDWPYQEARRL 231
+ + + E NR R + +P +P
Sbjct: 982 SEFPGRDGLTEFRDWWQDVQNRGRPKDADAASPFRRKFRKAHATKLFLPPGFPSPAVAEA 1041
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ PEV + E Q W PD +GL FLV G++ +R + + + N+ +Q
Sbjct: 1042 YLHPEVDSSPEPFQ--WGVPDLDGLRRFLVDTIGWDQERTDEVLVPVIRDMNRREVEGTQ 1099
Query: 288 GRLESFFKPVANTSA 302
+ FF + A
Sbjct: 1100 SNITRFFAGAVGSGA 1114
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G+KP++VFDG P LK+ L
Sbjct: 52 NSHVVGFFRRICKLLWYGVKPVFVFDGGAPALKRATL 88
>gi|332029054|gb|EGI69068.1| Flap endonuclease GEN [Acromyrmex echinatior]
Length = 736
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 16 MFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKF 75
M+ R + L G+ P++V +G+PP LK + +A+R R+ + + + G + +
Sbjct: 50 MYLRNLYFLVHGIFPVFVLEGKPPILKHKTIARRNDVRSRFQE--RKTAKKGGRTQFNRV 107
Query: 76 SKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFG 135
++CK LL+ MGV V++ EAEA CA L + G V S+D D +G
Sbjct: 108 L-----------NECKELLRYMGVACVQSYGEAEAMCAYLNEDGLVDGCISQDSDCFLYG 156
Query: 136 APRFLRHLMDPSSRKI-----PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
A R+ + V + + KI + LN+ ++ I L +L GCDY + + G+
Sbjct: 157 AKVVYRNFCMSTHGNCGATGGSVDVYSMEKIEKTLNIGRNKMIALALLCGCDYDEGVNGV 216
Query: 191 GGQTALKLIR 200
G + LK +
Sbjct: 217 GKEATLKFFK 226
>gi|357131085|ref|XP_003567173.1| PREDICTED: exonuclease 1-like [Brachypodium distachyon]
Length = 893
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T H++ R L G+KPI VFDG +K ++ KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEIKRARSRKENLERAREHEAAGN 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRGAFESYQKAVDITPRIASELIQVLKQENVSYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKI--PVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
D + FG R + MD + + +M E + L+ T +++CILSGCDY S
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGVEFQIMRLEQNRELDFNGFTKQMLLEMCILSGCDYLPS 230
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP--YQEARRLFK 233
+ G+G + A LI++ S E +++++ +P + +++A R F+
Sbjct: 231 LPGMGVKRAHALIQKLKSHEKVIKHLRYSSVSVPPQYEENFKKAIRAFQ 279
>gi|407867753|gb|EKG08658.1| hypothetical protein TCSYLVIO_000184 [Trypanosoma cruzi]
Length = 761
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 7/206 (3%)
Query: 13 LQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN---- 68
LQ + R +L G+ P+ VFDG P +K+ A+R RA + + ++ G
Sbjct: 78 LQFVMGRVDLMLRCGVHPVLVFDGAPIPMKQGTEAERQMLRAARLAEALQVLKQGGPSNP 137
Query: 69 --KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
+++ + ++ + +T + ++LK + + AP EA+AQ A LCK G V AV S
Sbjct: 138 RARQEAAQLLEKGMDITTELAHAVIQVLKERRLECIVAPYEADAQLAYLCKEGYVQAVVS 197
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS 186
ED D + + P + L ++ + ++ + L+ + F+ CILSGCDY S
Sbjct: 198 EDSDLIAYHCPCLIAKLDAHGGCEV-LFAQDLPRCPSFYGLSYESFLVGCILSGCDYLPS 256
Query: 187 IRGIGGQTALKLIRQHGSIETILENI 212
+R IG + A +L+ Q S+ I+ ++
Sbjct: 257 LRHIGVKKAFRLVAQATSVPIIMRSL 282
>gi|164449252|gb|ABY56082.1| exonuclease [Cucumis sativus]
Length = 336
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 11/220 (5%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA--- 66
+ H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 53 SKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTR---KENLARATEHEMN 109
Query: 67 GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVAS 126
GN + ++ V +T + ++LK V V AP EA+AQ L S QV AV +
Sbjct: 110 GNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDAVLT 169
Query: 127 EDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSGCDY 183
ED D + FG PR + MD + + +++ + ++LN T +++CILSGCDY
Sbjct: 170 EDSDLIPFGCPRIIFK-MDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 228 LPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|406864117|gb|EKD17163.1| DNA excision repair protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1423
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 38/283 (13%)
Query: 45 ELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV-KVTKQHNDDCKRLLKLMGVPVVE 103
+ A + R DA + + E + +K +R +VT +C+ LL+L G+P +
Sbjct: 959 QFASTLNNRTDAENQASYERELKALRNQQKKDRRDADEVTTVMISECQALLRLFGLPYIT 1018
Query: 104 APSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE 163
AP EAEAQCA L G V V ++D D FG R +++ + S K V + + I +
Sbjct: 1019 APMEAEAQCAELVNLGLVDGVVTDDCDIFLFGGTRVYKNMFN--SNKY-VECYLASDIEK 1075
Query: 164 ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI--------------------RQHG 203
EL+L+ DQ I + L G DY + + G+G TA++++ R H
Sbjct: 1076 ELSLSRDQLIAIAHLLGSDYTEGLPGVGPVTAIEILSEFPSKDGLEEFKEWFTSIQRPHA 1135
Query: 204 SIETILENINRERYQ--------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEG 255
+ R++++ +P +P + + +PEV E Q W PD E
Sbjct: 1136 PPLNTESSTFRKKFRRQQATKLFLPTGFPSKAVTEAYWKPEVDKTPEAFQ--WGVPDLEK 1193
Query: 256 LINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFF 294
L +FL++ G++ +R + I + + + +Q + FF
Sbjct: 1194 LRDFLMATIGWSQERTDEVLVPVIRDMNRREQEGTQSNITRFF 1236
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
SH+ G F R +LL G+KP++VFDG P LK+Q + +R +R D A
Sbjct: 52 NSHVIGFFRRICKLLYFGIKPVFVFDGGAPVLKRQTVLRRRQRREGKVVDAA 103
>gi|390599013|gb|EIN08410.1| PIN domain-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 518
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 6/141 (4%)
Query: 73 EKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPS--EAEAQCAALCKSGQVYAVASEDMD 130
E + +R+ T + + CK +L+ G+P +E EAEA +AL SG+ VASED D
Sbjct: 296 ESYKRRSNPPTSETYEQCKEILRASGIPCIETRGAFEAEALASALVLSGRADYVASEDTD 355
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
L + AP LR++ +SR +P+ + + L+LT +ID +L G D+ I+ +
Sbjct: 356 VLIYEAP-LLRNI---TSRNVPLSLLSGSDVRSVLSLTRSSYIDFALLLGTDFSQRIKNV 411
Query: 191 GGQTALKLIRQHGSIETILEN 211
G AL+ IR +GSIE IL++
Sbjct: 412 GPARALRFIRSYGSIEQILKH 432
>gi|396470540|ref|XP_003838668.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
gi|312215236|emb|CBX95189.1| similar to DNA excision repair protein Rad2 [Leptosphaeria maculans
JN3]
Length = 1312
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL L G+P + AP EAEAQCA L G V + ++D D+ FG R
Sbjct: 967 EVTQTMITECQHLLTLFGLPYITAPMEAEAQCAELVSLGLVDGIVTDDSDTFLFGGTRVY 1026
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + + V + + + E +LT D+ I + L G DY I GIG TAL+++
Sbjct: 1027 KNMFNAAKF---VECYLASDLASEFSLTRDKLIAIAQLLGSDYTPGIPGIGPVTALEILS 1083
Query: 201 ---------------QHGSIETILENIN--RERYQ--------IPEDWPYQEARRLFKEP 235
Q GSI + + R+R++ +P +P + P
Sbjct: 1084 EFPDLEQFKQWWTGVQDGSIPKAADATSPFRKRFRKNQATKLFLPPTFPDPRVADAYLHP 1143
Query: 236 EVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAI 275
EV +D + + W PD L FL S+ G++ +R + +
Sbjct: 1144 EVDSDPQPFE--WGVPDLAALRAFLQSQIGWSWERTDEVL 1181
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+Q + R S+R +D
Sbjct: 52 NSHIVGFFRRICKLLFIGIKPVFVFDGGAPALKRQTIQHRKSRREGRRED 101
>gi|302769318|ref|XP_002968078.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
gi|300163722|gb|EFJ30332.1| hypothetical protein SELMODRAFT_89678 [Selaginella moellendorffii]
Length = 552
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 31/232 (13%)
Query: 12 HLQGMFTRTIRL---LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
HL+ +F R + L L+ G P++V DG P LK +R+S+ + A + G+
Sbjct: 52 HLRLLFFRVVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRLSGIP---AAQLNGGD 108
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
F + ++C LL L+ VPV+ A SEAEA CA L ++G V A + D
Sbjct: 109 NHRNRAFLENV--------EECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPD 160
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAK-ILEELNLTMDQFIDLCILSGCDY-CDS 186
D+ GA ++ L + K P++E +A I L L + I L +L GCDY
Sbjct: 161 SDAFLHGASCVIQTLQ--ADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRG 218
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
I G+G A++L+ QH S + IL+N+ + W RR + PEV+
Sbjct: 219 IPGVGYSNAMRLV-QHFSKDEILDNLRK--------W----GRREYPSPEVI 257
>gi|302927330|ref|XP_003054474.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
gi|256735415|gb|EEU48761.1| hypothetical protein NECHADRAFT_65808 [Nectria haematococca mpVI
77-13-4]
Length = 1192
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 41/248 (16%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 862 EVTQVMITECQALLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVY 921
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E + LE EL+L+ +Q I L L G DY + + G+G TA++++
Sbjct: 922 KNMFNSNK----FVECYLGGDLEKELSLSREQLISLAQLLGSDYTEGLPGVGPVTAVEIL 977
Query: 200 RQHGSIETILENIN---------------------RERYQ--------IPEDWPYQEARR 230
+ ++ LE+ R++++ +P +P
Sbjct: 978 SEFPG-KSGLEDFRDWWKEVQSQSRPKEADASSPFRKKFRRSQGTKLFLPPGFPSPAVFD 1036
Query: 231 LFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SS 286
+ PEV E Q W PD EGL FL++ G++ +R + + + NK +
Sbjct: 1037 AYLNPEVDDSNESFQ--WGVPDVEGLRQFLMATIGWSKERTDEVLVPVIKDMNKRDREGT 1094
Query: 287 QGRLESFF 294
Q + FF
Sbjct: 1095 QSNITRFF 1102
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
SH+ G F R +LL G++P++VFDG P LK+Q +
Sbjct: 52 NSHVVGFFRRICKLLWFGIQPVFVFDGGAPVLKRQTI 88
>gi|350633529|gb|EHA21894.1| 5'-3' exonuclease [Aspergillus niger ATCC 1015]
Length = 672
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 2/214 (0%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+ + R LL G+ P VFDG K +R +R D+ E G +
Sbjct: 51 HIDFVLNRVRMLLYFGVTPYLVFDGDELPSKAGTEVERQKRRQDSKALGLELQRKGRIAE 110
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ ++ V VT + LK + V V AP EA+AQ A L + G + + SED D
Sbjct: 111 AYQELQKAVDVTPLMARELIEELKKINVQYVVAPYEADAQLAYLERQGVISGIISEDSDL 170
Query: 132 LTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
L FGA R L L +I +F + + + T D F +CILSGCDY +I +
Sbjct: 171 LVFGAKRLLSKLDQHGDCIEINRADFSACREVSLIGWTDDDFRRMCILSGCDYLPNIARL 230
Query: 191 GGQTALKLIRQHGSIETILENINRE-RYQIPEDW 223
G +TA + IR++ ++E L + + +Y +P D+
Sbjct: 231 GLKTAYRSIRKYKNVERALRMLQFDGQYHVPSDY 264
>gi|449459386|ref|XP_004147427.1| PREDICTED: exonuclease 1-like [Cucumis sativus]
Length = 685
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 11/221 (4%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-- 66
+ H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 52 TSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTRK---ENLARATEHEM 108
Query: 67 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
GN + ++ V +T + ++LK V V AP EA+AQ L S QV AV
Sbjct: 109 NGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDAVL 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSGCD 182
+ED D + FG PR + MD + + +++ + ++LN T +++CILSGCD
Sbjct: 169 TEDSDLIPFGCPRII-FKMDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSGCD 226
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
Y S+ G+G + A LI++ S E ++ ++ +P +
Sbjct: 227 YLPSLPGMGLKRAHALIKKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|449544360|gb|EMD35333.1| hypothetical protein CERSUDRAFT_66521 [Ceriporiopsis subvermispora
B]
Length = 320
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 21 IRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-GNKEDIEKFSKR 78
+RLL ++P VFDG P KK ++R ++R D A A+ A G ++ +
Sbjct: 63 VRLLRHYNIEPYIVFDGGPLPAKKGTESERKARR-DENIARANALAAQGKHSQAREYYVK 121
Query: 79 TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPR 138
+ VT Q + L+ VP V AP EA+AQ A L ++G V + +ED D L FG
Sbjct: 122 CIDVTPQMAYQFIKALRAECVPYVVAPYEADAQLAYLERTGVVDGIITEDSDLLVFGCKT 181
Query: 139 FLRHLMDPSSRKIPVMEFEVAKILEE-------LNLTMDQFIDLCILSGCDYCDSIRGIG 191
L L +S V + A I + + QF + ILSGCDY SI GIG
Sbjct: 182 VLFKLDVAASTVTRVSRADFASITSGSSSGISLVGWSDVQFRAMAILSGCDYLPSIPGIG 241
Query: 192 GQTALKLIRQHGSIETILENINRE-RYQIPEDWPYQEARRL 231
+TA L+R+H ++E ++ +N E + ++P Y EA R+
Sbjct: 242 LKTAWSLLRKHKTVENVVRALNLEGKKKVPHK--YLEAFRM 280
>gi|302764352|ref|XP_002965597.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
gi|300166411|gb|EFJ33017.1| hypothetical protein SELMODRAFT_85061 [Selaginella moellendorffii]
Length = 552
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 12 HLQGMFTRTIRL---LEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
HL+ +F R + L L+ G P++V DG P LK +R+S+ + A + G+
Sbjct: 52 HLRLLFFRVVTLKFSLQVGALPVFVVDGDAPLLKLPARIERFSRFSGIP---AAQLNGGD 108
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
F + ++C LL L+ VPV+ A SEAEA CA L ++G V A + D
Sbjct: 109 NHRNRAFLENV--------EECVELLGLLNVPVLRATSEAEALCAELERNGVVDACVTPD 160
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSI 187
D+ GA R + + +K V + + I L L + I L +L GCDY I
Sbjct: 161 SDAFLHGA-RCVIQTLQADIKKPLVESYLASDIRLALQLEREHLIALALLVGCDYNLRGI 219
Query: 188 RGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVV 238
G+G A++L+ QH S + IL+N+ + W RR + PEV+
Sbjct: 220 PGVGYSNAMRLV-QHFSKDEILDNLRK--------W----GRREYPSPEVI 257
>gi|384248409|gb|EIE21893.1| PIN domain-like protein [Coccomyxa subellipsoidea C-169]
Length = 347
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 3/222 (1%)
Query: 19 RTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKR 78
R L +AG+ PI +FDG +K E R R++ + +AGN + +R
Sbjct: 63 RVETLQQAGVSPIIIFDGGRLPMKSAEEGTRARSRSENLEKARAYWQAGNTTAAYESYQR 122
Query: 79 TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPR 138
V ++ LK V + AP EA+AQ A L +G V V SED D L +G PR
Sbjct: 123 AVDISPATAKQLIEALKAANVEYIVAPYEADAQMAYLAINGIVQVVISEDSDMLAYGCPR 182
Query: 139 -FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 197
F + + ++I + + + + T D F+++CIL+GCD+ ++ IG + A
Sbjct: 183 VFFKMDKNGDGQEICMADLPECRNPSLIGFTPDMFLEMCILAGCDFLKALSSIGIKKAHG 242
Query: 198 LIRQHGSIETILENINRERYQIPEDWP--YQEARRLFKEPEV 237
IR++ + + +++ ++P ++ +Q A F+ V
Sbjct: 243 HIRKYKTFIRVCKSLRFSGVKVPREYEADFQRALWTFRHQRV 284
>gi|150866513|ref|XP_001386143.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
gi|149387769|gb|ABN68114.2| 5'-3' exonuclease [Scheffersomyces stipitis CBS 6054]
Length = 676
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
++ + R L G++P +VFDG K + +R KR +A E +AG +
Sbjct: 55 YITSILKRVDMLRHFGVEPYFVFDGAALPTKAETANERRVKRQEARKKAEEYSKAGKRSL 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
K + VT Q L G+ + AP EA+ Q L K G V + SED D
Sbjct: 115 AWKEYMKAASVTSQMAKSVMVELDARGIKYIVAPYEADPQMVYLEKIGLVDGILSEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSR-KIPVMEFEVAKILEELN-LTMDQFIDLCILSGCDYCDSIRG 189
L FG R + L D + +I +F K + L+ + +Q + +LSGCDY + I+G
Sbjct: 175 LIFGCNRLITKLKDDGTLVEICRQDFHKVKSIPYLSKFSQEQLRLIAMLSGCDYTNGIQG 234
Query: 190 IGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
IG +TA L+++H +E I+ + E I E +
Sbjct: 235 IGIKTAFNLVQKHAKLERIVAVLRAEGKPIDEGF 268
>gi|431911852|gb|ELK13996.1| Flap endonuclease GEN like protein 1 [Pteropus alecto]
Length = 903
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R L +K ++V +G+PP+LK + KR R ++ + +++
Sbjct: 52 HLRNLFFRISYLTLMDVKLVFVMEGEPPELKADVINKRNQIRYGPSE------KTRSQKT 105
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ K ++ +C LL +G+P V+A EAEA CA L SG V ++D D+
Sbjct: 106 GRSYFKSVLR-------ECLELLDCIGIPWVQAAGEAEAMCAYLNASGYVDGCLTDDGDT 158
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGI 190
+GA R+ +S+ V + ++ I+ EL L D + L IL GCDY + G+
Sbjct: 159 FLYGAQTVYRNFA-MTSKDPHVDCYTMSSIMSELGLNRDALVGLAILLGCDYLPKGVPGV 217
Query: 191 GGQTALKLIR 200
G + ALKLI
Sbjct: 218 GKEQALKLIH 227
>gi|145252118|ref|XP_001397572.1| exonuclease [Aspergillus niger CBS 513.88]
gi|134083116|emb|CAK46789.1| unnamed protein product [Aspergillus niger]
Length = 758
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 2/214 (0%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H+ + R LL G+ P VFDG K +R +R D+ E G +
Sbjct: 55 HIDFVLNRVRMLLYFGVTPYLVFDGDELPSKAGTEVERQKRRQDSKALGLELQRKGRIAE 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ ++ V VT + LK + V V AP EA+AQ A L + G + + SED D
Sbjct: 115 AYQELQKAVDVTPLMARELIEELKKINVQYVVAPYEADAQLAYLERQGVISGIISEDSDL 174
Query: 132 LTFGAPRFLRHL-MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
L FGA R L L +I +F + + + T D F +CILSGCDY +I +
Sbjct: 175 LVFGAKRLLSKLDQHGDCIEINRADFSACREVSLIGWTDDDFRRMCILSGCDYLPNIARL 234
Query: 191 GGQTALKLIRQHGSIETILENINRE-RYQIPEDW 223
G +TA + IR++ ++E L + + +Y +P D+
Sbjct: 235 GLKTAYRSIRKYKNVERALRMLQFDGQYHVPSDY 268
>gi|116203679|ref|XP_001227650.1| hypothetical protein CHGG_09723 [Chaetomium globosum CBS 148.51]
gi|88175851|gb|EAQ83319.1| hypothetical protein CHGG_09723 [Chaetomium globosum CBS 148.51]
Length = 1331
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 4/200 (2%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
G+ P VFDG K + A R +R + E ++AG ++ + VT +
Sbjct: 70 GVTPYLVFDGDFLPSKAKTEASRSKRREETRKAGLELLKAGKPSQAYVELQKAIDVTPEM 129
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDP 146
LK VP V AP EA+AQ L + G + + SED D L FGA R L MD
Sbjct: 130 ARHLIEELKKADVPYVVAPYEADAQMVYLERQGLISGIVSEDSDLLVFGAKRLLTK-MDQ 188
Query: 147 SSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGS 204
I + +F + + T ++F + I SGCDY D + IG +TA +LIR+H +
Sbjct: 189 HGHCIEINRRDFCAVREISLTGWTDNEFRHMAIFSGCDYLDGVNNIGLKTAYRLIRKHKT 248
Query: 205 IETILENINRE-RYQIPEDW 223
E I++ + + ++QIPE +
Sbjct: 249 PERIVKMLRFDGKHQIPETY 268
>gi|448124207|ref|XP_004204862.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
gi|358249495|emb|CCE72561.1| Piso0_000145 [Millerozyma farinosa CBS 7064]
Length = 1067
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 35/236 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
D + LLK G+P + AP EAEAQCA L + G V + ++D D FG + +++ +
Sbjct: 807 DVQELLKRFGIPYIIAPMEAEAQCAELMRIGLVDGIITDDSDCFLFGGDKVYKNMF---N 863
Query: 149 RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIE-- 206
+K V + I L L+ D I+L +L G DY ++GIG A++++ + GS+E
Sbjct: 864 QKKYVECYSQKDIESHLGLSQDNLIELALLLGSDYTRGVKGIGPVLAVEILAEFGSLEKF 923
Query: 207 ------------------------TILENINRERYQIPEDWPYQEARRLFKEPEVVTDEE 242
+L + + E +P +K PEV D +
Sbjct: 924 KEWFDTNIHTTKPPDKSQMTSLQKNLLNRVKNGSLYLSETFPDMVVFDAYKRPEV--DSD 981
Query: 243 QLQIKWSAPDEEGLINFLVSENGFNSDRVTKA----IEKIKAAKNKSSQGRLESFF 294
KW P+ + ++L+ G+ RV + I I K++ +Q + FF
Sbjct: 982 ATPFKWGIPNLNDIRSYLIYNVGWTQSRVDEVMVPLIRDINRKKSEGTQSTISEFF 1037
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAV 64
SH+ G F R +LL G+ P++VFDG P LKKQ +A R +KR D T+ + +
Sbjct: 53 SHIVGFFRRICKLLYYGIMPVFVFDGGAPILKKQTIADRRAKREDKTESVTDTA 106
>gi|225682262|gb|EEH20546.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb03]
Length = 1233
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 905 ECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 961
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
++ +E + LE E +L + I L G DY + I G+G TAL+++ + ++E
Sbjct: 962 -QVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFSTLED 1020
Query: 208 ILE-----------------------NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N + +P +P + EPEV +D
Sbjct: 1021 FRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPGFPDSRVDTAYLEPEVDSDPSAF 1080
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
Q W PD L FL++ G+ +R + I + + + +Q + +FF+
Sbjct: 1081 Q--WGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1133
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R ++D A
Sbjct: 107 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPTLKRQTITARKKRREGRSEDAA 158
>gi|440292196|gb|ELP85438.1| exodeoxyribonuclease, putative [Entamoeba invadens IP1]
Length = 516
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 5/193 (2%)
Query: 28 MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHN 87
+ PI+VFDG KK +R R A + + ++G D EK+ + V++
Sbjct: 71 ITPIFVFDGAELPSKKMTEDERKKSRDCALEKAKQLEDSGLVNDSEKYYNKAVEIKPWMA 130
Query: 88 DDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPR--FLRHLMD 145
+ L+ +GV + AP EA+++ L K G V AV ED D + G R F +L +
Sbjct: 131 TAAIKSLREIGVESIVAPYEADSELGYLSKIGYVDAVLCEDSDLIVHGCKRVWFGFNLSE 190
Query: 146 PSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSI 205
+ ++ + F ++ + L+ ++ + LC+ +GCDYC S+RG+G + ALKL+ I
Sbjct: 191 ETVKEFTIENFAHTELGQ---LSREKLVYLCVFAGCDYCKSLRGVGIKKALKLVTSAVDI 247
Query: 206 ETILENINRERYQ 218
E +L+ + E ++
Sbjct: 248 EKVLDKMVNETFK 260
>gi|226289636|gb|EEH45120.1| DNA-repair protein rad13 [Paracoccidioides brasiliensis Pb18]
Length = 1178
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 850 ECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 906
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
++ +E + LE E +L + I L G DY + I G+G TAL+++ + ++E
Sbjct: 907 -QVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFSTLED 965
Query: 208 ILE-----------------------NINRERYQIPEDWPYQEARRLFKEPEVVTDEEQL 244
+ N + +P +P + EPEV +D
Sbjct: 966 FRDWWSQVQMGAKLPDGSHSAFWKKFKKNATKLFLPPGFPDSRVDTAYLEPEVDSDPSAF 1025
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFK 295
Q W PD L FL++ G+ +R + I + + + +Q + +FF+
Sbjct: 1026 Q--WGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNRREQEGTQSNITNFFQ 1078
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R ++D A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPTLKRQTITARKKRREGRSEDAA 103
>gi|295662156|ref|XP_002791632.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279758|gb|EEH35324.1| DNA-repair protein rad13 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1178
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 36/248 (14%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C+ LL+L G+P + AP EAEAQCA L G V V ++D D FG R +++ +
Sbjct: 850 ECQELLRLFGLPYITAPMEAEAQCAELVSLGLVDGVVTDDSDIFLFGGTRVYKNMFN--- 906
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
++ +E + LE E +L + I L G DY + I G+G TAL+++ + ++E
Sbjct: 907 -QVKFVECYLNSDLEKEYDLDRRKLIQFAHLLGSDYTEGIPGVGPVTALEILTEFSTLED 965
Query: 208 ILE----------------NINRERYQ-------IPEDWPYQEARRLFKEPEVVTDEEQL 244
+ + R++++ +P +P + EPEV +D
Sbjct: 966 FRDWWSQVQMGAQLPDDSHSAFRKKFKKNATKLFLPPGFPDSRVDTAYLEPEVDSDPSAF 1025
Query: 245 QIKWSAPDEEGLINFLVSENGFNSDR----VTKAIEKIKAAKNKSSQGRLESFFKPV--A 298
Q W PD L FL++ G+ +R + I + + + +Q + +FF+ A
Sbjct: 1026 Q--WGVPDLNALRQFLMATVGWTQERTDEVLVPVIRDMNRREQEGTQSNITNFFQGPQGA 1083
Query: 299 NTSAPIKR 306
AP +R
Sbjct: 1084 GAFAPHRR 1091
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
+H+ G F R +LL G+KP++VFDG P LK+Q + R +R T+D A
Sbjct: 52 NAHIVGFFRRICKLLYFGIKPVFVFDGGAPALKRQTITARKKRREGRTEDAA 103
>gi|255943339|ref|XP_002562438.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587171|emb|CAP94835.1| Pc18g06110 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1083
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT ++C++LL L G+P + AP EAEAQCA L G V + ++D D FG R
Sbjct: 760 EVTTIMINECQQLLTLFGLPYITAPMEAEAQCAKLVSLGLVDGIVTDDSDIFLFGGTRVY 819
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + S V + + + +E L + I L G DY + I GIG TAL+++
Sbjct: 820 KNMFNQSKF---VECYLTSDLEKEYALHRQKLISFAHLLGSDYTEGIPGIGPVTALEILT 876
Query: 201 QHGSIE------TILENIN----------RERYQ-------IPEDWPYQEARRLFKEPEV 237
+ S+E T L+ R++++ +P +P + EP V
Sbjct: 877 EFSSLEEFRDWWTKLQTGTNTADDAHVAFRKKFRKKASKIFLPPSFPDTRVDEAYLEPTV 936
Query: 238 VTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
D++ Q +W PD GL FL++ G++ +R + + + N+ Q
Sbjct: 937 --DDDPSQFQWGVPDLNGLRAFLMTTIGWSQERTDEVLVPVIRDMNRRDQ 984
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLA 61
SH+ G F R +LL G++P++VFDG P +K+Q +A R +R +D A
Sbjct: 52 NSHIVGFFRRICKLLYFGIRPVFVFDGGAPVMKRQTIAGRKKRREGHREDAA 103
>gi|432945552|ref|XP_004083655.1| PREDICTED: flap endonuclease GEN homolog 1-like [Oryzias latipes]
Length = 783
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 7 GEVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G VT HL+ +F R L G+K ++V +G P LK + ++KR R + +
Sbjct: 46 GRVTKPHLRNLFFRVSSLSLMGIKLVFVMEGTAPKLKAETMSKRTKARYGQFKNPTKCST 105
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
++ K +C +L +GVP V A EAEA CA L G V
Sbjct: 106 NTSRGRFNSILK-----------ECAEMLDYLGVPWVMAAGEAEAMCAYLDSQGLVDGCI 154
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC- 184
+ D D+ +GA R+ + SS+ + ++ +++ ELNL+ + + L IL GCDY
Sbjct: 155 TNDGDAFLYGARTVYRNF-NMSSKDPQIDCYQTSRVQTELNLSRENLVGLAILLGCDYIP 213
Query: 185 DSIRGIGGQTALKLIR 200
I G+G + AL+LI+
Sbjct: 214 KGIPGVGKEQALRLIQ 229
>gi|255732117|ref|XP_002550982.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
gi|240131268|gb|EER30828.1| hypothetical protein CTRG_05280 [Candida tropicalis MYA-3404]
Length = 678
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDI--EKFSKRTVKVTK 84
G+ P +VFDG KQE K KR +LAE A N + ++F K VT
Sbjct: 70 GITPYFVFDGAALPT-KQETNKERQKRRQEAKELAEKYLAANNPQLAGKQFMK-AAYVTS 127
Query: 85 QHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM 144
Q L +MG+ + AP EA+ Q L K G V + SED D L FG + + L
Sbjct: 128 QMAKSIMSELDIMGIKYIVAPYEADPQMVYLEKIGLVDGILSEDSDLLIFGCKKLITKLK 187
Query: 145 DPSS-RKIPVMEFEVAKILEELN-LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 202
D S +I F + + LN L+ DQ + +LSGCDY I GIG A +L R+H
Sbjct: 188 DDGSCYEINRENFGKVRQIPYLNQLSNDQLRLVAMLSGCDYTKGIPGIGLTKAFQLTRKH 247
Query: 203 GSIETIL 209
++E IL
Sbjct: 248 NNLEKIL 254
>gi|410926473|ref|XP_003976703.1| PREDICTED: flap endonuclease GEN homolog 1-like [Takifugu rubripes]
Length = 827
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R L G+K ++V +G+ P +K + ++KR R + G
Sbjct: 52 HLRNLFFRVSSLTLMGIKLVFVMEGEAPKIKAETMSKRTLARYGGFKKTSSTTSTGRG-- 109
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
R V K+ C +L ++GVP V A EAEA CA L G V + D D+
Sbjct: 110 ------RFKAVLKE----CADMLDILGVPWVTAAGEAEAMCAFLDSQGLVDGCITNDGDA 159
Query: 132 LTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRG 189
+GA R+ ++ K P+++ ++ +++ EL+L+ + + L +L GCDY I G
Sbjct: 160 FLYGAQIVYRNFH--TNSKDPLVDCYKTSRVQTELHLSRENLVGLAVLLGCDYIPKGIPG 217
Query: 190 IGGQTALKLIR 200
+G + ALKL+R
Sbjct: 218 VGKEQALKLLR 228
>gi|118398554|ref|XP_001031605.1| XPG I-region family protein [Tetrahymena thermophila]
gi|89285936|gb|EAR83942.1| XPG I-region family protein [Tetrahymena thermophila SB210]
Length = 648
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 11/228 (4%)
Query: 7 GEVTSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
GE T R +R+++ G++PI VFDG+ K + KR + E +E
Sbjct: 79 GEQTREYMLFLLRIVRVVKLNGIEPIVVFDGRNLKAKDFTIKKREETKEKNLQKANELME 138
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
GNK + K+ +R ++V K+ D +L+ + + +P EA++Q A L KS Q
Sbjct: 139 QGNKNEAIKYYQRCLRVNKEMIYDTIDMLRANNIEYLISPYEADSQVAYLVKSQQADFAI 198
Query: 126 SEDMDSLTFGAPRFLRHL-MDPSSRKIPVMEF-EVAKILEE-LNLTMDQF----IDLCIL 178
+ED D + + P+ + L +D S + + ++++ E + + E L + Q I +CI+
Sbjct: 199 TEDSDLICYSCPKIVFKLSLDSSCQYLDLLKYCERSNLQSEALRCFLSQNELNRIYICIM 258
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE---RYQIPEDW 223
+G DY SI+GIG + A+ L + G+ + +++ + E R IPE++
Sbjct: 259 AGSDYFPSIQGIGIKKAIDLFYRCGTFKNVMQKLRLEPKIRPLIPENY 306
>gi|390365680|ref|XP_003730870.1| PREDICTED: uncharacterized protein LOC100889325 [Strongylocentrotus
purpuratus]
Length = 1543
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
HL+ +F R L G+K ++V DG PP+LK +E+A+R R A G +
Sbjct: 54 HLRNLFFRASNFLRLGVKLVFVIDGTPPELKWEEIARRNEVRLGGGGGGARGGGGGWRGG 113
Query: 72 IEKFSKRTV---------KVTKQHND----DCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118
+ K ++ H +C+ LL+LMGVP +++ EAEA CAAL +
Sbjct: 114 GRGGWRGRGRGGGGGGVRKASRSHFSGWLKECQELLELMGVPCIQSKGEAEAMCAALNSA 173
Query: 119 GQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCIL 178
G V +ED D+ +GA R+L + + V + + I +L+L + + L IL
Sbjct: 174 GIVDGCMTEDGDAFLYGARIVYRNLNMATGK---VDCYRMDDIETKLDLDRGRLVALAIL 230
Query: 179 SGCDYC-DSIRGIGGQTALKLIR 200
GCDY + G+G + A++ ++
Sbjct: 231 LGCDYLPKGVPGVGKEVAMRFMK 253
>gi|358340619|dbj|GAA29362.2| flap endonuclease GEN homolog 1 [Clonorchis sinensis]
Length = 612
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRY-SKRADATDDLAEAVEAGNKE 70
+L+ +F RT+ LL P+ V DG P LK +A R ++R + + AV +
Sbjct: 52 YLRNLFFRTLNLLRQNTLPVVVLDGVAPSLKATTIANRLCTQRRNIELSIDPAVLVKRR- 110
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
R K++ +C+ LL+ +GVP V++P EAEA CA L S +V A + D D
Sbjct: 111 -------RLSKIS----GECRTLLQALGVPCVQSPGEAEAMCALLNSSKRVDACITNDGD 159
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDS-IRG 189
+ +GA RH +SR V + ++I +EL+L + L I+ GCDY + G
Sbjct: 160 AFLYGATTVYRHFTM-NSRDPSVYVYRSSRIYKELSLDRFLLVFLSIVLGCDYWPTGTVG 218
Query: 190 IGGQTALKLI 199
IG +L+
Sbjct: 219 IGQAGIQRLV 228
>gi|363732508|ref|XP_419963.2| PREDICTED: flap endonuclease GEN homolog 1 [Gallus gallus]
Length = 639
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 18/196 (9%)
Query: 7 GEVTS-HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVE 65
G VT HL+ +F R G+K ++V +G+ P LK ++KR R A+
Sbjct: 46 GVVTKPHLRNLFFRYSFFTSMGIKLVFVMEGEAPKLKADTMSKRNEIRYGAS-------- 97
Query: 66 AGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
NK + + + + K + +C +LL+ +GVP V+A EAEA CA L G V
Sbjct: 98 --NKHGVARTGRSSFKSILK---ECLQLLECLGVPWVQAAGEAEAMCAYLNAKGHVDGCI 152
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC 184
+ D D +GA R+ S K P ++ + ++ I E+L + I L +L GCDY
Sbjct: 153 TNDGDVFLYGAQTVYRNFAMNS--KEPHLDCYTMSSIKEKLGCDRESLIGLAVLLGCDYL 210
Query: 185 -DSIRGIGGQTALKLI 199
I G+G + ALKLI
Sbjct: 211 PKGIPGVGKEQALKLI 226
>gi|426239609|ref|XP_004013712.1| PREDICTED: exonuclease 1 [Ovis aries]
Length = 835
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 12/226 (5%)
Query: 7 GEVTSHLQGMFTRTIR-LLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEAV 64
GE T G + + LL G+KPI VFDG P K+ E ++R ++A+
Sbjct: 49 GEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLR 108
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
E E E F+ R++ VT + + + GV + AP EA+AQ A L K+G V AV
Sbjct: 109 EGKVSEARECFT-RSINVTHTMAHNVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAV 167
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCD 182
+ED D L FG + + MD + V + K L ++ T ++F +CILSGCD
Sbjct: 168 ITEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCD 225
Query: 183 YCDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 223
Y S+RGIG A KL+R + I ++ I + +PED+
Sbjct: 226 YLSSLRGIGLAKACKLLRLANNPDILKVIRKIGHYLKMNITVPEDY 271
>gi|402083876|gb|EJT78894.1| DNA-repair protein rad13 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 116/250 (46%), Gaps = 42/250 (16%)
Query: 89 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSS 148
+C++LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R +++ + +
Sbjct: 896 ECQQLLRLFGIPYITAPMEAEAQCAELVQLGLVDGIVTDDSDTFLFGGTRVYKNMFNGNK 955
Query: 149 RKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIET 207
+E ++ LE +L+L Q I L L G DY + + GIG TA++++ + +
Sbjct: 956 ----FVECYLSSDLEGDLSLGRPQLIALAQLLGSDYTEGLPGIGPVTAVEILSEFPGEDG 1011
Query: 208 I------------LENIN-----------RERYQ--------IPEDWPYQEARRLFKEPE 236
+ + ++N R +++ +P +P + +PE
Sbjct: 1012 LKQFAEWWHDVQSVTHLNPRDAEPERSTFRRKFRKSQGKRLFLPPGFPSPAVPEAYMQPE 1071
Query: 237 VVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLES 292
V +D + Q W APD GL FL+S G+ +R + + + NK +Q +
Sbjct: 1072 VDSDPQPFQ--WGAPDLRGLRTFLMSTVGWGEERTDEILVPVIRDMNKREAEGTQSNITR 1129
Query: 293 FFKPVANTSA 302
+F A
Sbjct: 1130 YFSGTVGAGA 1139
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQEL 46
+SH+ G F R +LL G++P++VFDG P LK+ L
Sbjct: 52 SSHVVGFFRRICKLLWFGIQPVFVFDGGAPILKRATL 88
>gi|393228982|gb|EJD36614.1| PIN domain-like protein [Auricularia delicata TFB-10046 SS5]
Length = 357
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 21 IRLLEAG-MKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-GNKEDIEKFSKR 78
+RL++ + P VFDG P K KR +R +A A ++ A G+ +
Sbjct: 63 VRLMQHHHVMPYVVFDGGPLPAKLGTEEKRQQQR-EANLSTANSLAAQGHHSQARDMYVK 121
Query: 79 TVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPR 138
V VT Q + L+ VP + AP EA+AQ A L + G + A+ +ED D L FGA +
Sbjct: 122 CVDVTPQMAYQLIKALRAANVPYIVAPYEADAQLAYLERQGLIDAILTEDSDLLVFGARQ 181
Query: 139 FLRHLMDPSSRKIPVMEFEVAKILEELNLTM----DQFIDLCILSGCDYCDSIRGIGGQT 194
L L D S + V + N + DQF + +L+GCDY DSI G+G +T
Sbjct: 182 ALFKL-DSSGTCVSVCRSDFGSPALHPNTLVGWGDDQFRWMAMLAGCDYLDSIPGMGLKT 240
Query: 195 ALKLIRQHGSIETILENINRE-RYQIPEDW 223
A KL+R++ ++E +L+ + E + ++P D+
Sbjct: 241 AHKLLRKYRTVEKVLQVVRFEGKCRVPRDY 270
>gi|340517177|gb|EGR47422.1| predicted protein [Trichoderma reesei QM6a]
Length = 1166
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 117/247 (47%), Gaps = 39/247 (15%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+L G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 862 EVTQTMIAECQALLRLFGIPYITAPMEAEAQCAELVRLGMVDGIVTDDSDTFLFGGTRVY 921
Query: 141 RHLMDPSSRKIPVMEFEVAKILE-ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 199
+++ + + +E +A LE E++L+ +Q I L L G DY + + G+G TA++++
Sbjct: 922 KNMFNSNK----FVECYIASDLEKEMSLSREQLISLAQLLGSDYTEGLPGVGPVTAVEIL 977
Query: 200 RQHGSIETILE--------------------NINRERYQ--------IPEDWPYQEARRL 231
+ + +++ + R +++ +P +P
Sbjct: 978 SEFPGKDGLVQFREWWKEVQSQTRPKEADAFSPFRRKFRKSQATKLFLPLGFPSPAVYEA 1037
Query: 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQ 287
+ P V + E+ Q W PD GL +L++ G++ +R + + + NK +Q
Sbjct: 1038 YLHPMVDSSTEKFQ--WGVPDVAGLREYLMATIGWSKERTDEVLVPVIRDMNKREIEGTQ 1095
Query: 288 GRLESFF 294
+ FF
Sbjct: 1096 SNITRFF 1102
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G++P++VFDG P LK+ + KR +R +D
Sbjct: 52 NSHIVGFFRRICKLLWFGIQPVFVFDGGAPALKRATIQKRKQRREGRRED 101
>gi|326915480|ref|XP_003204045.1| PREDICTED: exonuclease 1-like [Meleagris gallopavo]
Length = 778
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 7/198 (3%)
Query: 7 GEVTSHLQGMFTRTI-RLLEAGMKPIYVFDG-QPPDLKKQELAKRYSKRADATDDLAEAV 64
GE T H + + LL G+KPI VFDG P K+ E A+R ++A+
Sbjct: 49 GEPTDHYVAFCMKLVDMLLSFGIKPILVFDGCTLPSKKEVEKARREKRQANLLKGKQLFR 108
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
E E + F+ R+V VT + + + GV + AP EA+AQ A L K+G V A+
Sbjct: 109 EGKFSEARDCFA-RSVNVTHAMAHEVIKAARARGVDCIVAPYEADAQLAYLNKTGMVQAI 167
Query: 125 ASEDMDSLTFGAPR-FLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCD 182
+ED D L FG + FL+ +D + + + + + N+ T ++F +CILSGCD
Sbjct: 168 ITEDSDLLAFGCKKVFLK--IDKFGNGLEIDQARLGNCKQLGNVFTEEKFRYMCILSGCD 225
Query: 183 YCDSIRGIGGQTALKLIR 200
Y SI GIG A KL++
Sbjct: 226 YLSSIHGIGLAKACKLLK 243
>gi|354481807|ref|XP_003503092.1| PREDICTED: flap endonuclease GEN homolog 1 [Cricetulus griseus]
Length = 876
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
V HL+ +F R L++ +K ++V +G+PP LK ++KR R +
Sbjct: 49 VKPHLRNLFFRISYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPS----------G 98
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
K +K + K + +C +L+ +G+P V+A EAEA CA L SG V + D
Sbjct: 99 KPCSQKTGRSHFKSVLR---ECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTND 155
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVME-FEVAKILEELNLTMDQFIDLCILSGCDYC-DS 186
D+ +GA R+ + K P ++ + + I +L L D + L +L GCDY
Sbjct: 156 GDAFLYGAQMVYRNFT--MNTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKG 213
Query: 187 IRGIGGQTALKLIR 200
+ G+G + ALKL+R
Sbjct: 214 VPGVGKEQALKLLR 227
>gi|85116383|ref|XP_965045.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
gi|28926846|gb|EAA35809.1| hypothetical protein NCU07498 [Neurospora crassa OR74A]
Length = 1269
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 41/251 (16%)
Query: 81 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFL 140
+VT+ +C+ LL+ G+P + AP EAEAQCA L + G V + ++D D+ FG R
Sbjct: 875 EVTQIMITECQALLRFFGIPYITAPMEAEAQCAELVRLGLVDGIVTDDSDTFLFGGTRVY 934
Query: 141 RHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200
+++ + + V + + I +L+L+ DQ I L L G DY + + G+G TA++++
Sbjct: 935 KNMFNGNKF---VECYLSSDIERDLSLSRDQLIALAQLLGSDYTEGLSGVGPVTAVEILS 991
Query: 201 QHGSIETILENIN------------------------RERYQ--------IPEDWPYQEA 228
+ T + ++ R +++ +P +P
Sbjct: 992 EFPPEPTPISSLTTFKEWWTKIQSSPQPDPSLLSTPFRRKFRKAQATKLFLPVGFPNPAV 1051
Query: 229 RRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK---- 284
+ PEV + E Q W PD EGL FL+ G++ +R + + + NK
Sbjct: 1052 FDAYLHPEVDSTPEPFQ--WGVPDLEGLRQFLMQTIGWSQERTDEVLVPVIRDMNKRERE 1109
Query: 285 SSQGRLESFFK 295
+Q + FF+
Sbjct: 1110 GTQSNITRFFE 1120
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 10 TSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDD 59
SH+ G F R +LL G+KP++VFDG P LK+ + R +R DD
Sbjct: 52 NSHVVGFFRRICKLLWYGIKPVFVFDGGAPALKRATIQARRRRREGRRDD 101
>gi|449525676|ref|XP_004169842.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 1-like [Cucumis
sativus]
Length = 685
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 108/221 (48%), Gaps = 11/221 (4%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-- 66
+ H+ R L G+KP+ VFDG +K ++ KR R ++LA A E
Sbjct: 52 TSKHIDYCMHRINLLRHYGVKPVLVFDGGFLPMKNEQEIKRARTRK---ENLARATEHEM 108
Query: 67 -GNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA 125
GN + ++ V +T + ++LK V V AP EA+AQ L S QV AV
Sbjct: 109 NGNSAAAYECYQKAVDITPSIAHELIQVLKRENVSYVVAPYEADAQMTFLAISNQVDAVL 168
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELN---LTMDQFIDLCILSGCD 182
+ED D + FG PR + MD + + +++ + ++LN T +++CILSGCD
Sbjct: 169 TEDSDLIPFGCPRII-FKMDKFGQGVE-FRYDMLQKNKDLNFSGFTKQMILEMCILSGCD 226
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
Y S+ G+G + A LI + S E ++ ++ +P +
Sbjct: 227 YLPSLPGMGLKRAHALIXKFLSYEKVIRHLRYSTVAVPHLY 267
>gi|443897892|dbj|GAC75231.1| 5'-3' exonuclease [Pseudozyma antarctica T-34]
Length = 730
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 5/207 (2%)
Query: 21 IRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRT 79
IRLL+ G+KP VFDG K+ R +R D + + GN + +
Sbjct: 63 IRLLQHFGVKPYLVFDGDKLPAKRGTEDDREQRRNDNLERANQLEREGNMQQARDLFSKC 122
Query: 80 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRF 139
V +T + ++LK +P V AP EA+AQ A L G + + +ED D L FG
Sbjct: 123 VDITPEMAFQLIKVLKQQDIPYVVAPYEADAQLAFLEAEGIIDGIITEDSDLLVFGCKTV 182
Query: 140 LRHLMDPSSRKIPVME--FEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 197
L L D + I +++ F + L T +F + ILSGCDY SI G+G + A +
Sbjct: 183 LFKL-DQAGNAIEMLQQRFWTNRQLALSGWTAVEFRQMAILSGCDYLPSIVGMGLKNAHR 241
Query: 198 LIRQHGSIETILENINRE-RYQIPEDW 223
L+R++ +++ +L+ + E + ++P D+
Sbjct: 242 LLRRYKTVDKVLQAVRLEGKLRVPNDY 268
>gi|353243442|emb|CCA74982.1| related to RAD27-ssDNA endonuclease and 5`-3`exonuclease
[Piriformospora indica DSM 11827]
Length = 498
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 68 NKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVV--EAPSEAEAQCAALCKSGQVYAVA 125
++E E + +RT T Q + + LL MG+P V EAP E E +A+ +G VA
Sbjct: 269 SEELYESYQRRTDLPTDQTFAESRELLVAMGIPCVQSEAPYEGEGLASAIALAGHADYVA 328
Query: 126 SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCD 185
SED D + +GAP LR L + + P++ + IL L +T ++FID +L G D+
Sbjct: 329 SEDTDVIVYGAP-LLRGLTNQAK---PLVLIDSQDILTALTMTREEFIDFALLIGTDFTQ 384
Query: 186 SIRGIGGQTALKLIRQHGSIETILEN 211
+ +G ALK R++GSI ILEN
Sbjct: 385 RLHKVGPVAALKHTRKYGSIPRILEN 410
>gi|66802930|ref|XP_635308.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
discoideum AX4]
gi|74851348|sp|Q54ED2.1|EXO1_DICDI RecName: Full=Exonuclease 1
gi|60463584|gb|EAL61769.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1046
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 11/235 (4%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
+++ +R L+ + P+ +FDG P KK + +R R + + + GNK
Sbjct: 54 NYINYFISRIKMLISYKVIPVVIFDGGPLPNKKLKEQERLRHREEYKNKAKAYLLEGNKS 113
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
++ V +T + + L+ + V + AP EA+AQ L +GQV A+ +ED D
Sbjct: 114 QANICFQKAVDITPRMAFLLIKELRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSD 173
Query: 131 SLTFGAPRFLRHLMDPS--SRKIPVMEFEVAKI----LEELNLTMDQFIDLCILSGCDYC 184
+ FGA + MD +++I + K + N TM +CILSGCDY
Sbjct: 174 LVAFGATHIIFK-MDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTM--LRQMCILSGCDYL 230
Query: 185 DSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ--EARRLFKEPEV 237
S+ G+G +T+ KL++QH IE + + + RE+ +++ Q +A FK V
Sbjct: 231 PSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQFYKADFTFKHQRV 285
>gi|195441676|ref|XP_002068629.1| GK20322 [Drosophila willistoni]
gi|194164714|gb|EDW79615.1| GK20322 [Drosophila willistoni]
Length = 722
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKR--YSKRADATDDLAEAVEAGNK 69
HL+ +F RT L+ + P++V +G P LK Q +AKR R D + +
Sbjct: 51 HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKDSGSSNKENTD 110
Query: 70 EDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDM 129
+ EK R V KQ C+ LL MG+ V+ P EAEA CA L K G V V S+D
Sbjct: 111 KTKEKGRTRFNHVLKQ----CENLLISMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDS 166
Query: 130 DSLTFGAPRFLRHL-----MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 184
D +GA R R+ ++ V +++ I ++ ++ I + +L GCDYC
Sbjct: 167 DCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMRDICSRIDFGQNKIIVMALLCGCDYC 226
>gi|321252528|ref|XP_003192437.1| exonuclease [Cryptococcus gattii WM276]
gi|317458905|gb|ADV20650.1| Exonuclease, putative [Cryptococcus gattii WM276]
Length = 1015
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 105/207 (50%), Gaps = 7/207 (3%)
Query: 23 LLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEA-GNKEDIEKFSKRTVK 81
L G++P VFDG P KK R R + + A ++EA G ++ ++ R V
Sbjct: 66 LRHHGIEPFLVFDGGPLPAKKGTEVSRAKSRLENLEK-ARSLEAQGRIKEAKEAYTRCVD 124
Query: 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLR 141
VT + + L+ V V AP EA+AQ L + G V + +ED D L FG R R
Sbjct: 125 VTPEMAYQLIKALRAENVDYVVAPYEADAQLCFLEREGYVDGIITEDSDLLVFGCKRASR 184
Query: 142 HL--MDPSSRKIPVMEFEVAKILE--ELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALK 197
+ +D + + + +AK+ E T F + +LSGCDY DSI GIG +TA +
Sbjct: 185 VIFKLDKDGQCVWIHRDRLAKVREFPMHGWTDMHFRRMAMLSGCDYLDSIPGIGIKTAHR 244
Query: 198 LIRQHGSIETILENINRE-RYQIPEDW 223
L+R+ S+E +L++I E Y IP +
Sbjct: 245 LMRRFNSVEKLLQHIRLEGTYLIPPTY 271
>gi|344246628|gb|EGW02732.1| Flap endonuclease GEN-like 1 [Cricetulus griseus]
Length = 317
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 15/193 (7%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
V HL+ +F R L++ +K ++V +G+PP LK ++KR R +
Sbjct: 49 VKPHLRNLFFRISYLIQMNVKLVFVMEGEPPKLKADVISKRTQTRYGPS----------G 98
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
K +K + K + +C +L+ +G+P V+A EAEA CA L SG V + D
Sbjct: 99 KPCSQKTGRSHFKSVLR---ECLEMLECLGIPWVQAAGEAEAMCAYLNASGHVDGCLTND 155
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSI 187
D+ +GA R+ +++ V + + I +L L D + L +L GCDY +
Sbjct: 156 GDAFLYGAQMVYRNFTM-NTKDPHVDCYTASSIKSKLGLDRDALVGLAVLLGCDYLPKGV 214
Query: 188 RGIGGQTALKLIR 200
G+G + ALKL+R
Sbjct: 215 PGVGKEQALKLLR 227
>gi|269861368|ref|XP_002650394.1| exonuclease I [Enterocytozoon bieneusi H348]
gi|220066165|gb|EED43662.1| exonuclease I [Enterocytozoon bieneusi H348]
Length = 327
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
H++ + + L+ + PI++ DG D K R + + L A+E +
Sbjct: 55 HIKIFRSELVALIHKNIIPIFILDGDKLDSKLITYNHRQNLKEKYLSQLKIAIENHDNTR 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
KR V +T D + L+++ V + AP EA++Q A L K V + SED D
Sbjct: 115 ARDLMKRVVTITPDFIYDFIKELEILQVEYIIAPYEADSQMAYLNKINYVDHIMSEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQF-----IDLCILSGCDYCDS 186
+ +GA L I V ++ E+L+ F +D+CILSGCDY +S
Sbjct: 175 ICYGAKSVLF-----KYNGIFVDHYKS----EDLSKAYGSFFAKNILDICILSGCDYINS 225
Query: 187 IRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW--PYQEARRLF 232
I+GIG TA+KL ++ ++E + ++ ++ IP D+ + +A++ F
Sbjct: 226 IKGIGLITAVKLFQKEKTVEKFVTSLAHKK-TIPSDYIEQFYQAKKTF 272
>gi|384483460|gb|EIE75640.1| hypothetical protein RO3G_00344 [Rhizopus delemar RA 99-880]
Length = 515
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 10 TSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T+ F I +L + P+ VFDGQ +K++ +KR KR ++ + + V+
Sbjct: 52 TTKYVSYFMNLINMLRFYKVIPLVVFDGQSLPMKQETNSKRAQKRKESFNIGFKLVKDNK 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
++ + ++++ +T+ + L +GV V AP EA+AQ A L K+ A +ED
Sbjct: 112 IKEALPYLQQSISITQDMIQQVVKKLDEIGVQHVIAPYEADAQLAYLLKNNYAQAAITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEF---EVAKILEELNLTMDQFIDLCILSGCDYCD 185
D L FG + L +R M +++K+++ ++ +C+LSGCDY
Sbjct: 172 SDLLAFGCSTVIFKL----NRYGDCMRIHFEDISKVIDIKPFSVTTLRHICMLSGCDYLP 227
Query: 186 SIRGIGGQTALKLIRQHGSIETILENI----NRERYQ 218
S++GIG +TA LI++H +IE +++ + N RYQ
Sbjct: 228 SLKGIGLKTAETLIKKHLTIEKVMKALRFRQNIARYQ 264
>gi|430814069|emb|CCJ28648.1| unnamed protein product [Pneumocystis jirovecii]
Length = 458
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 23/184 (12%)
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAP--SEAEAQCAALCKSGQVYAVASEDM 129
I+K S+R T + + K + +++G+ V+ +P EAEA ++L SG V +ED
Sbjct: 231 IQKLSRRLSSPTWEQINQTKTIFEILGITVLTSPPGYEAEAVASSLVNSGIADFVVTEDT 290
Query: 130 DSLTFGAPRFLRHLM--------DPSSRKIPVMEFEVAKILEELNL---TMDQFIDLCIL 178
D L A + LR M + + P F + I LNL ++D FID IL
Sbjct: 291 DVLVLNA-KMLRGFMSMRGLANKNSENSFFPPNMFMIDPIDVRLNLDNISLDSFIDFAIL 349
Query: 179 SGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN-------RERYQIPEDW--PYQEAR 229
G D+C++I G+G A LI+++ +IE +LEN++ R++Y PE++ Q AR
Sbjct: 350 CGTDFCNTIHGLGCYGAFFLIQKYQNIELVLENLSEFKTKSGRQKYIAPENYIQEVQVAR 409
Query: 230 RLFK 233
++FK
Sbjct: 410 KVFK 413
>gi|350589314|ref|XP_003130603.3| PREDICTED: exonuclease 1 [Sus scrofa]
Length = 836
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 7 GEVTSHLQGMFTRTIR-LLEAGMKPIYVFDGQP-PDLKKQELAKRYSKRADATDDLAEAV 64
GE T G + + LL G+KPI VFDG P K+ E ++R ++A+
Sbjct: 49 GEPTDKYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVEKSRRERRQANLLKGKQLLR 108
Query: 65 EAGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
E E E F+ R++ +T + + GV + AP EA+AQ A L K+G V A+
Sbjct: 109 EGKVSEARECFT-RSINITHAMAHSVIKAARAQGVDCLVAPYEADAQLAYLNKAGIVQAI 167
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDY 183
+ED D L FG + + MD + V + + K + ++ T ++F +CILSGCDY
Sbjct: 168 ITEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGKCKQLGDVFTEEKFRYMCILSGCDY 226
Query: 184 CDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 223
S+RGIG A K++R + I +++ I + +PED+
Sbjct: 227 LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDY 271
>gi|156843134|ref|XP_001644636.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
70294]
gi|156115283|gb|EDO16778.1| hypothetical protein Kpol_526p31 [Vanderwaltozyma polyspora DSM
70294]
Length = 487
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 12 HLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKED 71
+LQ + L G+KP +VFDG +KK KR +KR + + +G +
Sbjct: 55 YLQFFIKKLAMLKSYGIKPYFVFDGDSLPVKKDTEVKRRNKRVENREVAIRLYNSGEVRN 114
Query: 72 IEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDS 131
+ ++ V VT + ++ + + AP EA+AQ L K V + SED D
Sbjct: 115 SMDYFQKCVDVTPEMAKCVMDYCQIHHIDYIVAPFEADAQMVYLEKQNIVQGIISEDSDL 174
Query: 132 LTFGAPRFLRHLMDPSS---------RKIPVMEFEVAKILEELNLTMDQFIDLCILSGCD 182
L FG R + L D K+P +F + ++ EE TM +C LSGCD
Sbjct: 175 LIFGCRRLITKLNDFGECIEICKDDFNKLP-KKFPLHELSEEGIKTM-----VC-LSGCD 227
Query: 183 YCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 223
Y + I IG A+KL+ Q+ +I+ IL +I R+ ++QIPE +
Sbjct: 228 YTNGIPRIGLVKAIKLVHQYRNIDKILLSIRRDGKFQIPETF 269
>gi|297597717|ref|NP_001044421.2| Os01g0777300 [Oryza sativa Japonica Group]
gi|75114038|sp|Q60GC1.1|EXO1_ORYSJ RecName: Full=Exonuclease 1; AltName: Full=OsEXO-1
gi|54111120|dbj|BAD60834.1| exonuclease-1 [Oryza sativa Japonica Group]
gi|255673742|dbj|BAF06335.2| Os01g0777300 [Oryza sativa Japonica Group]
Length = 836
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 9/220 (4%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T H++ R L G+KPI VFDG +K + KR R + + E AGN
Sbjct: 52 TTRHIEYCMHRVNMLRHHGVKPILVFDGGHLPMKGDQETKRERSRKENLERAKEHESAGN 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ ++ V +T + + ++LK V + AP EA+AQ L + V AV +ED
Sbjct: 112 SRAAFECYQKAVDITPRIAFELIQVLKQEKVDYIVAPYEADAQMTFLSVNKLVDAVITED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI--LEELNL---TMDQFIDLCILSGCDY 183
D + FG R + MD + + EF + ++ EL+L TM +++CILSGCDY
Sbjct: 172 SDLIPFGCSRII-FKMDKFGQGV---EFHITRLQRCRELDLNGFTMQMLLEMCILSGCDY 227
Query: 184 CDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDW 223
S+ G+G + A LI++ E +++++ +P +
Sbjct: 228 LPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVSVPPQY 267
>gi|357159491|ref|XP_003578463.1| PREDICTED: flap endonuclease GEN-like 1-like [Brachypodium
distachyon]
Length = 639
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 6/216 (2%)
Query: 12 HLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKE 70
HL+ F RT+ L + G P++V DGQP LK Q A R+ + + ++ +A +
Sbjct: 54 HLRTTFFRTLSLFSKMGAFPVFVVDGQPSPLKYQARAARFFRGSGIDRSALQSEDAEGEA 113
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
+ K ++ ++C LL +G+PV+ A EAEA CA L G V A + D D
Sbjct: 114 SVPAPVKGRNAAFTRYVEECVELLGYLGMPVLRATGEAEALCAQLNNEGHVDACITSDSD 173
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDSIRG 189
+ FGA ++ L S+ K P + +A I + L Q + + +L G D+ + G
Sbjct: 174 AFLFGAKTVIKVLR--SNCKEPFECYNIADIESGIGLKRKQMVAMALLVGSDHDLHGVPG 231
Query: 190 IGGQTALKLIR--QHGSIETILENINRERYQIPEDW 223
G +TAL+ ++ + I L+ I R Y E +
Sbjct: 232 FGVETALRFVQLFEEDHILDKLKEIGRGIYPFLEGF 267
>gi|50553030|ref|XP_503925.1| YALI0E14014p [Yarrowia lipolytica]
gi|49649794|emb|CAG79518.1| YALI0E14014p [Yarrowia lipolytica CLIB122]
Length = 546
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 140/319 (43%), Gaps = 30/319 (9%)
Query: 10 TSHLQGMFTRTIRLLE-AGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGN 68
T Q R + L+ G+ + VFDG K+ KR++ R A + + G
Sbjct: 52 TDRPQQWVMRKVEFLKRCGVDVLIVFDGGALPSKRGTDEKRHALRDQAHKEALALMSRGR 111
Query: 69 KEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128
+ + ++ ++T++ LLK +P V AP EA+AQ L K+G + SED
Sbjct: 112 RSEAVNLFQKATRITQEMVHQLTELLKSQRIPFVVAPYEADAQLVYLEKAGYATGIISED 171
Query: 129 MDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILE-ELN--LTMDQFIDLCILSGCDYCD 185
D + +GA + L +DPS + V ++ + EL + ++ + ILSGCDYCD
Sbjct: 172 SDLVVYGA-QMLVTKLDPSGGCVTVDGSRISSCSDLELGSEVPLEYLRYMAILSGCDYCD 230
Query: 186 SIRGIGGQTALKLIRQHGSIETILENINRERYQIPED-----------WPYQ-----EAR 229
+ +G + A + IR+ + E I++ + + Y D + YQ EAR
Sbjct: 231 GVPNVGPKRAARYIRRWQTPEAIIKALRMDGYNSSPDFLERFHAANFTFLYQRVYCPEAR 290
Query: 230 RL--FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQ 287
RL EPE D E++ A +GL + + G R K K AK + +
Sbjct: 291 RLVHLNEPEDELD-EKVDFHIGAEIPQGLARAIAT--GLVHPRTHKTFPANKTAKPTNLR 347
Query: 288 GRLESFFKPVANTSAPIKR 306
G FF P + +KR
Sbjct: 348 G----FFAPKNEYTGDVKR 362
>gi|367031744|ref|XP_003665155.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
gi|347012426|gb|AEO59910.1| hypothetical protein MYCTH_2308577 [Myceliophthora thermophila ATCC
42464]
Length = 760
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
Query: 27 GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQH 86
G+ P VFDG K + A R +R ++ E + AG ++ + VT +
Sbjct: 70 GVTPYVVFDGDFLPSKAKTEAARSKRREESKRIGLELLRAGKPSQAYSELQKAIDVTPEM 129
Query: 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHL-MD 145
LK VP V AP EA+AQ L + G + + SED D L FGA R L L
Sbjct: 130 ARHLIEELKKADVPYVVAPYEADAQLVYLERQGLISGIVSEDSDLLVFGAKRLLTKLDQH 189
Query: 146 PSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSI 205
+I +F + + T +F + ILSGCDY D + IG +TA +L+R+H +
Sbjct: 190 GQCVEINRRDFCAVREISLTGWTDREFRHMAILSGCDYLDGVSNIGLKTAYRLVRKHKTP 249
Query: 206 ETILENINRE-RYQIPEDW 223
E I++ + + ++QIP+ +
Sbjct: 250 ERIIKMLRFDGKHQIPDSY 268
>gi|350417449|ref|XP_003491427.1| PREDICTED: DNA repair protein complementing XP-G cells-like [Bombus
impatiens]
Length = 1107
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 29/249 (11%)
Query: 71 DIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMD 130
+I K ++ + ++ Q + + LL+L G+P + AP EAEAQCA L + + ++D D
Sbjct: 723 NIGKLERQGIDISDQIQIEAQELLRLFGIPYIIAPMEAEAQCAYLEQIHLIDGTITDDSD 782
Query: 131 SLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGI 190
FG ++ D + + V+EF I LT ++ I L +L G DY + GI
Sbjct: 783 IWLFGGQCVYKNFFDNNKK---VLEFRSCDIQHYFKLTRNEMIRLALLVGSDYTTGLTGI 839
Query: 191 GGQTALKLIRQHGS-----------IETILEN------------INRERYQIPEDWPYQE 227
G TAL+++ S + +EN + QI + +P Q
Sbjct: 840 GPVTALEILAAFPSEGDDLLQGLINFSSWIENGKTAGPGKANLRTKLQNLQIQKGFPSQA 899
Query: 228 ARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAAKNKSS 286
+ + P+V DE + W P+ L +++ + G++ ++ K IE + K + K S
Sbjct: 900 VVQAYLSPKV--DESKETFTWGKPNIILLADYVKQKFGWDKNKYDKIIEPVLKRLQEKQS 957
Query: 287 QGRLESFFK 295
Q ++ ++FK
Sbjct: 958 QQKINAYFK 966
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 11 SHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
+HL G+F R +LL +KP++VFDG P LKK +A R +++ A
Sbjct: 53 AHLIGLFHRICKLLYYKIKPVFVFDGGVPMLKKNTIALRRKQKSMA 98
>gi|427797693|gb|JAA64298.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 856
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 35/268 (13%)
Query: 69 KEDIEKFSKRTVKVTKQHND----DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAV 124
++++E+ + R + ND +C+ LL L+G P V +P EAEAQCA L + G V
Sbjct: 565 EQELEQEAARQQRHAASLNDVLVKECQELLALLGQPYVVSPGEAEAQCAWLEQHGLSQGV 624
Query: 125 ASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC 184
++D D+ FGA RHL P R M F + + + L + + +L G DY
Sbjct: 625 VTDDSDAWLFGAQCIYRHLFRPDRRP---MRFLMKDLASQFGLDRQKMVAFALLCGSDYT 681
Query: 185 DSIRGIGGQTALKLIRQHGS---------IETILENINRERYQ-------------IPED 222
+ G+G TA++++ + T LE E+ Q +
Sbjct: 682 TGVNGVGPVTAMEVLSEFKGDDAVSLLEEFRTWLEKAKEEKVQPGSKTRSHLVRLSLEPG 741
Query: 223 WPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKI-KAA 281
+P + + EP V DE + W PD + L + + G++ +++ + + K
Sbjct: 742 FPSSRVAQAYLEPTV--DESRETFSWGTPDLDALRTYANQKLGWSREKLDDLLLPVLKRM 799
Query: 282 KNKSSQGRLESFFKPVANTSAPIKRKVY 309
K Q R+E + + AP K K++
Sbjct: 800 GAKQKQTRMEQYLEAC---QAPPKPKLF 824
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 9 VTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADA 56
+HL G+ R +LL G+KP++VFDG P LKKQ LA R +R A
Sbjct: 54 ANAHLLGLLQRVCKLLFYGVKPVFVFDGGVPQLKKQTLAARQERRTTA 101
>gi|328877038|gb|EGG25401.1| 5'3'-exonuclease N- and I-domain-containing protein [Dictyostelium
fasciculatum]
Length = 994
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 22/256 (8%)
Query: 30 PIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVTKQHNDD 89
P+ VFDG P K+ R SKR + + GN+ + K ++ V VT +
Sbjct: 73 PVIVFDGGPLPNKRGTEDDRRSKRQQYKEKANAYLLEGNRAEANKCFQKAVDVTTLMAFN 132
Query: 90 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR 149
+ L+ +G+ V AP EA+AQ A L + QV A+ +ED D + +G P L + ++
Sbjct: 133 LIKELRRLGIEYVVAPYEADAQLAYLAVTNQVDAILTEDSDLIAYGTPTVLFKM----NK 188
Query: 150 KIPVMEFEVAKI-------LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH 202
+ E + I L+ N + +CIL+GCDY S+ G+G +T+ KL +++
Sbjct: 189 EGYCEEIKSENICSCKSNGLDFGNFNLTMLRQMCILAGCDYLPSLHGMGIKTSYKLFKEY 248
Query: 203 GSIETILENINRERYQIPEDW--PYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFL 260
IE I + + + ++ E++ + +A F+ V + + +S DEE +
Sbjct: 249 KEIEKIFKYLKGTK-RLTEEYVGSFYKADLTFRHARVYDPVSKTMVHFSPLDEENV---- 303
Query: 261 VSENGFNSDRVTKAIE 276
G N D + + IE
Sbjct: 304 ----GTNMDFLGECIE 315
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,665,380,833
Number of Sequences: 23463169
Number of extensions: 190136644
Number of successful extensions: 607720
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2134
Number of HSP's successfully gapped in prelim test: 2115
Number of HSP's that attempted gapping in prelim test: 601391
Number of HSP's gapped (non-prelim): 5224
length of query: 311
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 169
effective length of database: 9,027,425,369
effective search space: 1525634887361
effective search space used: 1525634887361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)