Query 021529
Match_columns 311
No_of_seqs 246 out of 1691
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8k_A Flap endonuclease 1; he 100.0 2.2E-69 7.5E-74 508.6 31.7 290 2-295 52-341 (341)
2 1ul1_X Flap endonuclease-1; pr 100.0 5.7E-69 2E-73 513.3 19.5 296 2-298 52-347 (379)
3 3ory_A Flap endonuclease 1; hy 100.0 1.1E-67 3.9E-72 500.1 25.1 289 2-297 61-362 (363)
4 2izo_A FEN1, flap structure-sp 100.0 2.9E-65 1E-69 482.6 23.0 289 2-294 44-346 (346)
5 1rxw_A Flap structure-specific 100.0 6.1E-62 2.1E-66 458.4 28.2 280 2-294 47-336 (336)
6 1b43_A Protein (FEN-1); nuclea 100.0 1.5E-62 5E-67 463.3 23.1 283 2-295 47-339 (340)
7 1a76_A Flap endonuclease-1 pro 100.0 1.2E-62 4E-67 461.5 18.1 277 2-295 47-326 (326)
8 3qe9_Y Exonuclease 1; exonucle 100.0 2.2E-50 7.4E-55 380.7 18.3 286 5-300 47-348 (352)
9 1exn_A 5'-exonuclease, 5'-nucl 100.0 2E-45 6.9E-50 336.7 8.1 189 4-224 36-246 (290)
10 1bgx_T TAQ DNA polymerase; DNA 100.0 1.3E-46 4.6E-51 388.4 -8.4 234 2-268 33-280 (832)
11 3h7i_A Ribonuclease H, RNAse H 100.0 6.3E-33 2.2E-37 252.5 6.0 163 2-193 32-211 (305)
12 2y35_A LD22664P; hydrolase-DNA 97.9 0.00014 4.9E-09 77.0 14.3 96 98-193 162-299 (1140)
13 3fqd_A Protein DHP1, 5'-3' exo 97.5 0.0006 2.1E-08 69.9 11.9 95 98-192 195-349 (899)
14 3pie_A 5'->3' exoribonuclease 97.4 0.001 3.4E-08 70.2 11.8 177 15-192 63-301 (1155)
15 2a1j_A DNA repair endonuclease 97.0 0.00032 1.1E-08 49.0 2.5 26 185-210 7-32 (63)
16 1z00_B DNA repair endonuclease 96.6 0.0011 3.7E-08 49.0 3.1 27 185-211 21-47 (84)
17 1kft_A UVRC, excinuclease ABC 95.6 0.005 1.7E-07 44.5 2.1 26 186-211 28-53 (78)
18 1z00_A DNA excision repair pro 95.6 0.0093 3.2E-07 44.1 3.6 27 185-211 22-48 (89)
19 1x2i_A HEF helicase/nuclease; 95.5 0.011 3.6E-07 42.0 3.6 26 186-211 18-43 (75)
20 2a1j_B DNA excision repair pro 95.2 0.014 4.7E-07 43.4 3.5 25 186-210 36-60 (91)
21 2nrt_A Uvrabc system protein C 95.1 0.012 4.1E-07 51.1 3.2 26 185-210 171-196 (220)
22 3c65_A Uvrabc system protein C 93.0 0.018 6.1E-07 50.3 0.0 29 183-211 174-202 (226)
23 2bgw_A XPF endonuclease; hydro 90.7 0.11 3.8E-06 44.7 2.5 25 186-210 166-190 (219)
24 1ixr_A Holliday junction DNA h 90.1 0.14 4.6E-06 43.5 2.4 88 187-278 77-170 (191)
25 4gfj_A Topoisomerase V; helix- 88.9 0.26 8.7E-06 46.6 3.4 25 186-210 472-496 (685)
26 1cuk_A RUVA protein; DNA repai 87.7 0.24 8.2E-06 42.4 2.3 18 187-204 78-95 (203)
27 2ztd_A Holliday junction ATP-d 86.9 0.5 1.7E-05 40.7 3.9 109 162-278 73-188 (212)
28 1s5l_U Photosystem II 12 kDa e 82.1 0.32 1.1E-05 38.7 0.4 23 187-209 68-92 (134)
29 1vq8_Y 50S ribosomal protein L 79.6 0.37 1.3E-05 42.3 0.0 25 185-209 18-43 (241)
30 2owo_A DNA ligase; protein-DNA 75.7 1.5 5.1E-05 44.1 3.1 25 186-210 516-540 (671)
31 3sgi_A DNA ligase; HET: DNA AM 75.5 0.57 2E-05 46.6 0.0 26 186-211 533-558 (615)
32 2bcq_A DNA polymerase lambda; 75.3 1.8 6E-05 39.8 3.3 26 186-211 100-126 (335)
33 2duy_A Competence protein come 74.1 1.5 5.1E-05 30.8 2.0 17 186-202 31-47 (75)
34 2ziu_A MUS81 protein; helix-ha 73.6 2.5 8.6E-05 38.1 3.8 29 186-214 241-269 (311)
35 2w9m_A Polymerase X; SAXS, DNA 73.5 4.3 0.00015 40.0 5.8 27 186-212 101-128 (578)
36 3maj_A DNA processing chain A; 73.0 5.4 0.00019 37.2 6.0 41 167-213 17-57 (382)
37 3c1y_A DNA integrity scanning 72.4 1.7 5.8E-05 40.5 2.4 25 187-211 320-344 (377)
38 2fmp_A DNA polymerase beta; nu 72.4 1.8 6.2E-05 39.7 2.6 25 186-210 102-127 (335)
39 1jms_A Terminal deoxynucleotid 72.0 2.2 7.5E-05 39.9 3.1 25 186-210 125-150 (381)
40 3arc_U Photosystem II 12 kDa e 70.6 1.1 3.9E-05 33.5 0.6 23 186-208 30-54 (97)
41 2ihm_A POL MU, DNA polymerase 70.6 2.2 7.6E-05 39.6 2.7 24 186-209 106-130 (360)
42 3b0x_A DNA polymerase beta fam 69.6 3.1 0.0001 41.0 3.7 28 186-213 97-126 (575)
43 2i5h_A Hypothetical protein AF 68.7 3.8 0.00013 34.8 3.5 47 166-212 111-167 (205)
44 1dgs_A DNA ligase; AMP complex 68.5 2.3 8E-05 42.7 2.6 24 186-209 511-534 (667)
45 4glx_A DNA ligase; inhibitor, 65.0 4.3 0.00015 40.2 3.6 18 8-25 86-103 (586)
46 2ztd_A Holliday junction ATP-d 58.4 4.9 0.00017 34.4 2.4 27 177-204 117-145 (212)
47 3vdp_A Recombination protein R 58.3 4.2 0.00014 34.8 1.9 16 186-201 30-45 (212)
48 1vdd_A Recombination protein R 52.8 5.8 0.0002 34.3 1.9 16 186-201 16-31 (228)
49 1ixr_A Holliday junction DNA h 50.3 8.1 0.00028 32.4 2.4 18 186-203 111-128 (191)
50 2edu_A Kinesin-like protein KI 49.3 8.5 0.00029 28.4 2.2 17 186-202 44-60 (98)
51 2qip_A Protein of unknown func 49.3 27 0.00092 28.0 5.5 49 87-135 63-125 (165)
52 2csb_A Topoisomerase V, TOP61; 48.6 11 0.00039 33.3 3.2 104 157-267 352-492 (519)
53 3b0x_A DNA polymerase beta fam 46.9 13 0.00044 36.5 3.7 39 160-201 108-147 (575)
54 3fhg_A Mjogg, N-glycosylase/DN 44.8 11 0.00039 31.7 2.5 18 186-203 121-138 (207)
55 1cuk_A RUVA protein; DNA repai 43.3 11 0.00037 31.9 2.2 17 186-202 112-128 (203)
56 3fhf_A Mjogg, N-glycosylase/DN 41.2 13 0.00046 31.6 2.4 17 186-202 129-145 (214)
57 2zix_A Crossover junction endo 40.0 3.2 0.00011 37.4 -1.9 29 186-214 237-265 (307)
58 3umv_A Deoxyribodipyrimidine p 39.8 46 0.0016 32.1 6.2 32 86-118 96-127 (506)
59 3n0u_A Probable N-glycosylase/ 39.6 12 0.00041 32.0 1.9 18 186-203 134-151 (219)
60 1pu6_A 3-methyladenine DNA gly 38.7 13 0.00046 31.6 2.0 16 186-201 125-140 (218)
61 2e0i_A 432AA long hypothetical 38.2 34 0.0011 32.3 4.9 41 87-128 58-98 (440)
62 3i8o_A KH domain-containing pr 37.1 1.5E+02 0.0052 23.3 7.9 49 85-134 58-119 (142)
63 3r8n_M 30S ribosomal protein S 35.8 27 0.00094 26.7 3.2 17 187-203 21-37 (114)
64 1kea_A Possible G-T mismatches 35.8 16 0.00054 31.1 2.0 15 187-201 120-134 (221)
65 2h56_A DNA-3-methyladenine gly 35.5 16 0.00054 31.4 2.0 16 186-201 142-157 (233)
66 1kg2_A A/G-specific adenine gl 35.2 16 0.00056 31.1 2.0 15 187-201 114-128 (225)
67 2zvk_U DNA polymerase ETA, pro 34.5 8.3 0.00028 21.1 -0.0 15 285-299 7-21 (26)
68 2xry_A Deoxyribodipyrimidine p 34.4 1.2E+02 0.0042 28.6 8.3 45 86-130 93-138 (482)
69 1np7_A DNA photolyase; protein 34.3 86 0.0029 29.8 7.2 32 87-118 67-98 (489)
70 3ix7_A Uncharacterized protein 32.3 1.6E+02 0.0055 22.9 7.3 44 87-131 62-108 (134)
71 1orn_A Endonuclease III; DNA r 32.2 20 0.00067 30.7 2.0 14 187-200 118-131 (226)
72 2abk_A Endonuclease III; DNA-r 31.8 19 0.00066 30.3 1.9 15 187-201 114-128 (211)
73 2g3q_A Protein YBL047C; endocy 31.3 38 0.0013 20.6 2.8 26 251-278 3-28 (43)
74 4glx_A DNA ligase; inhibitor, 30.8 31 0.0011 34.0 3.4 26 185-210 515-540 (586)
75 3s6i_A DNA-3-methyladenine gly 30.8 21 0.00073 30.5 2.0 15 186-200 143-157 (228)
76 3iz6_M 40S ribosomal protein S 30.8 7.6 0.00026 31.4 -0.8 17 187-203 33-49 (152)
77 3i0w_A 8-oxoguanine-DNA-glycos 30.3 21 0.00074 31.7 2.0 15 186-200 215-229 (290)
78 2yg9_A DNA-3-methyladenine gly 29.6 23 0.00079 30.3 2.0 15 186-200 150-164 (225)
79 4b21_A Probable DNA-3-methylad 29.0 24 0.00081 30.4 2.0 15 186-200 154-168 (232)
80 1rvv_A Riboflavin synthase; tr 29.0 69 0.0024 25.7 4.6 42 84-125 28-76 (154)
81 1ci4_A Protein (barrier-TO-aut 28.5 25 0.00084 25.7 1.7 16 185-200 21-36 (89)
82 3nq4_A 6,7-dimethyl-8-ribityll 28.4 50 0.0017 26.7 3.7 42 84-125 28-77 (156)
83 2jhn_A ALKA, 3-methyladenine D 28.2 25 0.00084 31.3 2.0 37 163-201 176-229 (295)
84 1mpg_A ALKA, 3-methyladenine D 28.2 25 0.00084 31.1 2.0 15 186-200 211-225 (282)
85 2di0_A Activating signal coint 27.8 1.2E+02 0.0041 21.1 5.0 27 187-213 24-51 (71)
86 1di0_A Lumazine synthase; tran 27.7 42 0.0014 27.1 3.2 42 84-125 26-74 (158)
87 2ziu_B Crossover junction endo 27.5 50 0.0017 30.1 4.0 28 187-214 260-287 (341)
88 3p87_G Ribonuclease H2 subunit 27.5 14 0.00048 19.9 0.1 18 284-301 2-19 (23)
89 1hqk_A 6,7-dimethyl-8-ribityll 27.2 72 0.0025 25.6 4.4 42 84-125 28-76 (154)
90 1kz1_A 6,7-dimethyl-8-ribityll 27.1 76 0.0026 25.6 4.6 42 84-125 33-82 (159)
91 2l69_A Rossmann 2X3 fold prote 26.7 71 0.0024 23.5 3.9 49 84-132 12-64 (134)
92 2w9m_A Polymerase X; SAXS, DNA 26.0 76 0.0026 31.0 5.3 36 161-200 113-149 (578)
93 1dnp_A DNA photolyase; DNA rep 25.7 1.1E+02 0.0036 29.1 6.1 13 190-202 202-214 (471)
94 2wq7_A RE11660P; lyase-DNA com 25.6 1.7E+02 0.0058 28.2 7.7 13 190-202 245-257 (543)
95 3tvs_A Cryptochrome-1; circadi 25.4 99 0.0034 29.9 5.9 46 85-130 61-110 (538)
96 3u5c_S 40S ribosomal protein S 25.4 40 0.0014 26.9 2.6 17 187-203 35-51 (146)
97 2obx_A DMRL synthase 1, 6,7-di 25.2 47 0.0016 26.8 3.0 42 84-125 27-75 (157)
98 1c2y_A Protein (lumazine synth 25.1 75 0.0026 25.6 4.2 42 84-125 29-76 (156)
99 4e9f_A Methyl-CPG-binding doma 24.4 32 0.0011 27.8 1.9 14 186-199 108-121 (161)
100 3n5n_X A/G-specific adenine DN 23.5 33 0.0011 30.6 1.9 15 187-201 134-148 (287)
101 2dak_A Ubiquitin carboxyl-term 23.1 93 0.0032 20.7 3.8 26 250-277 7-32 (63)
102 2xhi_A N-glycosylase/DNA lyase 23.1 34 0.0012 31.4 2.0 16 186-201 257-272 (360)
103 2ekk_A UBA domain from E3 ubiq 23.0 71 0.0024 19.8 3.0 26 250-277 7-32 (47)
104 1u3d_A Cryptochrome 1 apoprote 22.4 2.4E+02 0.008 26.8 7.9 19 86-104 89-107 (509)
105 3bqs_A Uncharacterized protein 21.7 68 0.0023 23.4 3.0 24 186-209 8-32 (93)
106 3mkl_A HTH-type transcriptiona 20.8 2.5E+02 0.0085 20.4 7.7 74 190-276 35-109 (120)
107 2vqe_M 30S ribosomal protein S 20.5 31 0.001 26.9 0.9 17 187-203 22-38 (126)
108 2kp7_A Crossover junction endo 20.2 45 0.0016 24.0 1.7 14 186-199 62-75 (87)
No 1
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=2.2e-69 Score=508.58 Aligned_cols=290 Identities=53% Similarity=0.977 Sum_probs=273.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|+|++|.||+|++||++|+++|++++++|+|||||.++++|++++++||++|+++.+.+.++++.|+++++.+++++++.
T Consensus 52 l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~VFDg~~~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~ 131 (341)
T 3q8k_A 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (341)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTTTCEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCC
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHCCCCceEEEeCCCcccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhccc
Confidence 78999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCCcccEEEeHHHH
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (311)
+|+.|++.++++|+++|||++++|||||||||+|++.|.+++|+|+|+|++||+++++++++..++.+..++..++.+.+
T Consensus 132 vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~g~v~~i~s~D~D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 211 (341)
T 3q8k_A 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (341)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSCTHHHHTTCSEEEESCCCCSSCCCEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhcCCeEEEEcCCccccccCCcEEEEcccccccCCCceEEEcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776443333345788999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhcCCCCCCcc
Q 021529 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (311)
Q Consensus 162 ~~~~gl~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (311)
.+++|++|+||+|+|+|+||||+|||||||+|||++||++|||+|+|++++++.+.++|++|++.+++.+|++|+|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~ 291 (341)
T 3q8k_A 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (341)
T ss_dssp HHHHTCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTT
T ss_pred HHHhCCCHHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999998766
Q ss_pred ccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCCcccccC
Q 021529 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (311)
Q Consensus 242 ~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~~~q~~l~~ff~ 295 (311)
+ .+|.|+.||.++|++||++++||+.+||++.++|+++..+ |++|++||.
T Consensus 292 ~-~~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~---~~~l~~~~~ 341 (341)
T 3q8k_A 292 S-VELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQ---GSTLEVLFQ 341 (341)
T ss_dssp T-SCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHH---HHCCCCCCC
T ss_pred c-cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCcHhhhcC
Confidence 6 5899999999999999988999999999999999987765 999999993
No 2
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=5.7e-69 Score=513.26 Aligned_cols=296 Identities=54% Similarity=0.980 Sum_probs=244.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|++++|.+|++++||++++++|+++|++|+|||||.++++|++++++||++|+++++.++.+++.|+++++.+++++++.
T Consensus 52 l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~~VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 131 (379)
T 1ul1_X 52 LQNEEGETTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVK 131 (379)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCCEEEEECCSCCSCCCCCCCCC-----------------------------CCC
T ss_pred cCcCCCCCchHHHHHHHHHHHHHHCCCCeEEEEeCCCcccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccC
Confidence 77899999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCCcccEEEeHHHH
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (311)
+|..|++.++++|+++|||+++||||||||||+|++.|.+++|+|+|+|++||++++|++++...+.+..++.+|+.+.+
T Consensus 132 vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS~D~Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v 211 (379)
T 1ul1_X 132 VTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLSRI 211 (379)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSCTHHHHTTCSEEEECSSCCC-CCCCEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEecCcCccccccceEEEEecccccCcCCeEEEeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766433223346789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHHhcCCCCCCcc
Q 021529 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDE 241 (311)
Q Consensus 162 ~~~~gl~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (311)
++.+|++|+||+|+|+|+||||+|||||||+|||++||++||++|+|++++++.+.+++++|++.+++.+|++++|+++.
T Consensus 212 ~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~~~k~~~~~~~~~~~ar~l~l~~~v~~~~ 291 (379)
T 1ul1_X 212 LQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPE 291 (379)
T ss_dssp HHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCCTTSCCCSSCCHHHHHHHHHSCCCCCGG
T ss_pred HHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhhcccCCCcCCHHHHHHHhcCCeeCCCC
Confidence 99999999999999999999999999999999999999999999999999998888999999988999999999999877
Q ss_pred ccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCCcccccCcCC
Q 021529 242 EQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVA 298 (311)
Q Consensus 242 ~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~~~q~~l~~ff~~~~ 298 (311)
++ ++.|..||.++|++|+.++++|+++||.+.++++.+...+.+|++||+||+++.
T Consensus 292 ~~-~l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~rl~~~~~~~~q~~l~~ff~~~~ 347 (379)
T 1ul1_X 292 SV-ELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTG 347 (379)
T ss_dssp GC-CCCCCCCCHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHSCCSBCCHHHHSEEEE
T ss_pred Cc-cCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcHHhhcCCCC
Confidence 77 899999999999998778999999999999999998888889999999998765
No 3
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=1.1e-67 Score=500.13 Aligned_cols=289 Identities=38% Similarity=0.663 Sum_probs=254.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|+|++|.+|+|++||++|++++++++++|+|||||.+|++|++++++||++|+++++++..++++|+.+++.++++++..
T Consensus 61 l~~~~G~~T~al~gf~~r~~~ll~~~i~Pv~VFDg~~p~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~ 140 (363)
T 3ory_A 61 LMDNNGRITSHLSGLFYRTINIVEAGIKPVYVFDGKPPELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAK 140 (363)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCC
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHcCCCcEEEEcCCCccchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhcccc
Confidence 78999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCC----Cc-----c
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR----KI-----P 152 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~----~~-----~ 152 (311)
+|++|++.++++|+++|||+++||||||||||+|+++|.+++|+|+|+|++|||++++++++...+.+ .. .
T Consensus 141 vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g~~~~I~S~D~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~ 220 (363)
T 3ory_A 141 LTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKGDAYASASQDYDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVK 220 (363)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSCSEEECSSSHHHHTTCSEEEESTTTCEEEECSSTTCEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCCCeEEEECCCcCccccCCCeEEEEeeccccccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998876533211 00 2
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 021529 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (311)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~~d~~~L~G~D~~d-~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (311)
.+.|+.+.+++++|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++. ..++ |++.+++.+
T Consensus 221 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~--~~~~~~~~~ 296 (363)
T 3ory_A 221 PELIELDKLLVQLGITLENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE--VDVIAIKKY 296 (363)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC--CCHHHHHHH
T ss_pred eEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC--CCHHHHHHH
Confidence 368999999999999999999999999999999 99999999999999999999999999874 2333 568899999
Q ss_pred hcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhc---cCCCCCcccccCcC
Q 021529 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKN---KSSQGRLESFFKPV 297 (311)
Q Consensus 232 ~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~---~~~q~~l~~ff~~~ 297 (311)
|++|.|+. +. +++|+.||.++|++||+++++|+.+||++.++|+.+..+ +.+|+|||+||++-
T Consensus 297 f~~p~v~~--~~-~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~~ 362 (363)
T 3ory_A 297 FLQPQVTD--NY-RIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSKP 362 (363)
T ss_dssp HHSCCCCS--CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hcCCCCCC--CC-CCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCCC
Confidence 99999985 34 699999999999999999999999999999999987654 47999999999863
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-65 Score=482.56 Aligned_cols=289 Identities=40% Similarity=0.664 Sum_probs=206.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|++++|.+|++++||++++++++++|++|+|||||.++++|++++++||++|+++++++..+++.|+.+++.++++++..
T Consensus 44 l~~~~G~~t~al~g~~~~~~~ll~~~i~Pv~vFDG~~~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 123 (346)
T 2izo_A 44 LMDSQGRVTSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILR 123 (346)
T ss_dssp CBCSSSCBCHHHHHHHHHHHHHHHHTEEEEEEECC---------------------------------------------
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCcEEEEECCCCcchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccC
Confidence 68899999999999999999999989999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCC---------cc
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRK---------IP 152 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~---------~~ 152 (311)
+|+.|++.++++|+++|||+++||||||||||+|+++|.+++|+|+|+|++|||+++|++++...+.++ ..
T Consensus 124 vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I~S~D~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~ 203 (346)
T 2izo_A 124 LSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAAASQDYDAILFGAKRLVRNLTITGKRKLPNKDVYVEIK 203 (346)
T ss_dssp -CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESSCC-----------CCCCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEEECCCCCcceecCCeEEEEecccccccCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999987764332211 03
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 021529 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (311)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~~d~~~L~G~D~~d-~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (311)
+..|+.+.+++++|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+|+++++.. ++++++++.+++.+
T Consensus 204 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~~~~--k~~~~~~~~~l~~i 281 (346)
T 2izo_A 204 PELIETEILLKKLGITREQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEYGEIS--KKDINFNIDEIRGL 281 (346)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC-------------------CTTHHHH
T ss_pred eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHhc--cCCCCccHHHHHHH
Confidence 568999999999999999999999999999999 999999999999999999999999999876 48888887889999
Q ss_pred hcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhcc----CCCCCccccc
Q 021529 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK----SSQGRLESFF 294 (311)
Q Consensus 232 ~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~----~~q~~l~~ff 294 (311)
+.++.|+.+ ..++.|..||.++|.+|++++++|+.+||.+.++|+.+...+ .+|+|||+||
T Consensus 282 ~~~~~v~~~--~~~l~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~~~~~~~~q~~l~~ff 346 (346)
T 2izo_A 282 FLNPQVVKP--EEALDLNEPNGEDIINILVYEHNFSEERVKNGIERLTKAIKEAKGASRQTGLDRWF 346 (346)
T ss_dssp HHSCCCCCC--C-CCCCCCCCHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTBCCGGGCC
T ss_pred hhCCCCCCc--cccCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcccCCCCCcchhhcC
Confidence 999999754 458999999999999999889999999999999999876553 6899999998
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=6.1e-62 Score=458.43 Aligned_cols=280 Identities=39% Similarity=0.668 Sum_probs=243.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|++++|.+|++++||++++++|++++|+|+|||||.++++|++++++||++|+++|+.+..+++.|+ +++..+++++..
T Consensus 47 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~vFDg~~~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~-~~l~~~~~~~~~ 125 (336)
T 1rxw_A 47 LKDSQGRITSHLSGILYRVSNMVEVGIRPVFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGD-KDAKKYAQAAGR 125 (336)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHHTCEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHTC-TTHHHHHHHHCC
T ss_pred ccccCCCccHHHHHHHHHHHHHHHCCCEEEEEEcCCCCcccccchHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHhhcc
Confidence 6789999999999999999999998999999999999999999999999999999999999999999 888899999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCC---------Ccc
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSR---------KIP 152 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~---------~~~ 152 (311)
+|+.|++.++++|+++|||++++|||||||||+|+++|.+++|+|+|+|++||++++|++++...+.+ ...
T Consensus 126 vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~ 205 (336)
T 1rxw_A 126 VDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVK 205 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998876543211 013
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCc-hHHHHHH
Q 021529 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWP-YQEARRL 231 (311)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~-~~~~~~~ 231 (311)
+..++.+.+.+++|++|+||+|+|+|+||||++||||||+|||++||++|||+|+|+++++ ++++ ..+.+.+
T Consensus 206 ~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~-------~~l~~~~~l~~i 278 (336)
T 1rxw_A 206 PEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK-------VNIDHVEEIRNF 278 (336)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT-------C----CHHHHHH
T ss_pred eEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC-------CCCccHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999986 2333 3478889
Q ss_pred hcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCCccccc
Q 021529 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFF 294 (311)
Q Consensus 232 ~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~~~q~~l~~ff 294 (311)
+.++.|+ + ..++.|..||.++|.+|++++++|+.+||.+.++|+.+... +|+|||+||
T Consensus 279 ~~~~~v~-~--~~~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~l~~~~~--~q~~l~~~f 336 (336)
T 1rxw_A 279 FLNPPVT-D--DYRIEFREPDFEKAIEFLCEEHDFSRERVEKALEKLKALKS--TQATLERWF 336 (336)
T ss_dssp HHSCCCC-C--CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHGGGCC--------------
T ss_pred HhCCCCC-C--cccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHhhhc--cCcchhhcC
Confidence 9999887 2 45899999999999999988999999999999999876544 799999998
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=1.5e-62 Score=463.31 Aligned_cols=283 Identities=42% Similarity=0.746 Sum_probs=259.5
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|+|+.|.+|++++||++++++|++++++|+|||||.++++|++++++|+.+|.++.+.+..++..|+.+.+.++++++..
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~ 126 (340)
T 1b43_A 47 LMDSKGRITSHLSGLFYRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATR 126 (340)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGG
T ss_pred cccccCCchHHHHHHHHHHHHHHhCCCEEEEEecCCCchhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 67899999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCCc---------c
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKI---------P 152 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~---------~ 152 (311)
+++.|++.++++|+++|||+++||||||||||+|++.|.+++|+|+|+|++|||+++|++++...+.+.. .
T Consensus 127 vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S~D~D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~ 206 (340)
T 1b43_A 127 VNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEIK 206 (340)
T ss_dssp GTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEEECTTSSCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEccCCCcceecCcEEEEEeccCCCccCcccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887653321100 3
Q ss_pred cEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 021529 153 VMEFEVAKILEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRL 231 (311)
Q Consensus 153 ~~~~~~~~v~~~~gl~~~q~~d~~~L~G~D~~d-~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (311)
+..|+.+.+++++|++|+||+|+|+|+||||++ ||||||+|||++||++|||+|+++++ ++++++.+++.+
T Consensus 207 ~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~il~~--------~~~~~~~~~~~~ 278 (340)
T 1b43_A 207 PELIILEEVLKELKLTREKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQK--------QSDVDLYAIKEF 278 (340)
T ss_dssp CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGGGTGG--------GCSSCHHHHHHH
T ss_pred eeEEEHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHHHHcC--------CCCccHHHHHHH
Confidence 467999999999999999999999999999999 99999999999999999999999988 344556788999
Q ss_pred hcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCCcccccC
Q 021529 232 FKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFK 295 (311)
Q Consensus 232 ~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~~~q~~l~~ff~ 295 (311)
|+++.|.. ..++.|..||.++|.+|++++++|+.+||.+.++|+.+...+.+|+|||+||+
T Consensus 279 ~~~~~v~d---~~~~~~~~pd~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~q~~l~~~f~ 339 (340)
T 1b43_A 279 FLNPPVTD---NYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFK 339 (340)
T ss_dssp HHSCCCCC---CCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHTTGGGCCSSCC
T ss_pred HhCCCCCC---cccCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCCHHHhhC
Confidence 99998874 44799999999999999878999999999999999988877789999999996
No 7
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=1.2e-62 Score=461.54 Aligned_cols=277 Identities=40% Similarity=0.714 Sum_probs=245.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhcc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVK 81 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 81 (311)
|+++.|.+|++++||++++++++.++++|+|||||.++++|++++++||++|+++++++..+++.|+.+++.++++++..
T Consensus 47 l~~~~G~~t~~l~g~~~~l~~ll~~~i~Pv~vFDG~~~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~ 126 (326)
T 1a76_A 47 LRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSY 126 (326)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHHTTCEEEEEECCCSSCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCS
T ss_pred cccccCCccHHHHHHHHHHHHHHHCCCeEEEEEeCcCcccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 67899999999999999999998889999999999999999999999999999999988777777888888889999999
Q ss_pred CCHHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCCcccEEEeHHHH
Q 021529 82 VTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI 161 (311)
Q Consensus 82 v~~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~v 161 (311)
+|+.|++.++++|+++|||++++|||||||||+|+++|.+++|+|+|+|++||+++++++++...+ ..+++|+.+.+
T Consensus 127 vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~---~~~~~~~~~~v 203 (326)
T 1a76_A 127 LTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTK---EMPELIELNEV 203 (326)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEEECSSSGGGGGTCSEEEESSSSCS---SCCEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHCCCEEEEecCCcccceecCCEEEEeecCCC---CceEEEEHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987664332 35789999999
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHHHcCCHHHHH-HHHHhhcCCCCCCCchHHHHHHhcCCCCCC
Q 021529 162 LEELNLTMDQFIDLCILSGCDYCD-SIRGIGGQTALKLIRQHGSIETIL-ENINRERYQIPEDWPYQEARRLFKEPEVVT 239 (311)
Q Consensus 162 ~~~~gl~~~q~~d~~~L~G~D~~d-~ipgiG~ktA~~li~~~gsle~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (311)
.+++|++|+||+|+|+|+||||++ ||||||+|||++||++ ||+|+++ ++++. ..+++.+|+++.|..
T Consensus 204 ~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~~~~~~~----------~~~~~~~~l~~~l~~ 272 (326)
T 1a76_A 204 LEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVLKKEVEY----------YDEIKRIFKEPKVTD 272 (326)
T ss_dssp HHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHHHHHSTT----------HHHHHHHHHSCCCCC
T ss_pred HHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHHHHHHhH----------HHHHHHHHhCCCCCC
Confidence 999999999999999999999999 9999999999999999 9999999 99762 347779999998875
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-CCCCCcccccC
Q 021529 240 DEEQLQIKWSAPDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNK-SSQGRLESFFK 295 (311)
Q Consensus 240 ~~~~~~~~~~~~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~-~~q~~l~~ff~ 295 (311)
+. ++.|..||.++|++|+.++++|+.+||.+.++|+.+...+ .+|+|||+||+
T Consensus 273 --~~-~~~~~~~d~~~l~~~~~~~~~f~~~rv~~~~~~~~~~~~~~~~q~~l~~~f~ 326 (326)
T 1a76_A 273 --NY-SLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKTKQKTLDAWFK 326 (326)
T ss_dssp --CC-CCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --Cc-cCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCcCchhhhcC
Confidence 44 7899999999999996689999999999999999876654 78999999994
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=100.00 E-value=2.2e-50 Score=380.69 Aligned_cols=286 Identities=27% Similarity=0.408 Sum_probs=231.6
Q ss_pred CCCCcchHHHHHHHHHHHHH-HcCCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhccCC
Q 021529 5 EAGEVTSHLQGMFTRTIRLL-EAGMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTVKVT 83 (311)
Q Consensus 5 ~~G~~t~a~~g~~~~l~~ll-~~~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~~v~ 83 (311)
+.|.+|+++.|++.+.++++ ++||+|+|||||.+++.|+++..+|+.+|.+..+..+.++++|+.+++.++|+++..+|
T Consensus 47 ~~G~~t~~l~~~~~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt 126 (352)
T 3qe9_Y 47 AKGEPTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINIT 126 (352)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCC
Confidence 47999999999999999975 79999999999999888988888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCCCccccccCCeeEEEeecCCCCCcccEEEeHHHH--
Q 021529 84 KQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKI-- 161 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~v-- 161 (311)
+.+++.++++|+++|||+++||||||||||+|+++|.+++|+|+|+|++||++++|++.+...+ ....++.+.+
T Consensus 127 ~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~----~~~~~~~~~~~~ 202 (352)
T 3qe9_Y 127 HAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFG----NGLEIDQARLGM 202 (352)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTS----EEEEEEGGGGTT
T ss_pred HHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCC----CcEEEeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999877664322 1245777765
Q ss_pred HHHcC--CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHc--CCHHHHHHHHHhh---cCCCCCCCc--hHHHHHHh
Q 021529 162 LEELN--LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQH--GSIETILENINRE---RYQIPEDWP--YQEARRLF 232 (311)
Q Consensus 162 ~~~~g--l~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~--gsle~i~~~~~~~---~~~~~~~~~--~~~~~~~~ 232 (311)
++++| ++|+||+|+|+|+||||++||||||+|||++||++| |+++++++++++. +.++|++|. +.+|..+|
T Consensus 203 ~~~~g~~l~~~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F 282 (352)
T 3qe9_Y 203 CRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTF 282 (352)
T ss_dssp CCTTCSSCCHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 67889 999999999999999999999999999999999999 7999999998853 467899887 57899999
Q ss_pred cCCCCCCccccccCCCCC----CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCCcccccCcCCCC
Q 021529 233 KEPEVVTDEEQLQIKWSA----PDEEGLINFLVSENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANT 300 (311)
Q Consensus 233 ~~~~v~~~~~~~~~~~~~----~d~~~l~~~~~~~~~f~~~~v~~~~~~~~~~~~~~~q~~l~~ff~~~~~~ 300 (311)
+|+.|.++..-.-.++++ .+.+.+ .|+ .. .+. +.+...+ -.+.....+-..+++|-+.+.+.
T Consensus 283 ~~q~V~dp~~~~~~~l~~~~~~~~~~~~-~~~-G~-~~~-~~~~~~i--a~G~~~p~t~~~~~~~~~~~~~~ 348 (352)
T 3qe9_Y 283 LYQLVFDPIKRKLIPLNAYEDDVDPETL-SYA-GQ-YVD-DSIALQI--ALGNKDINTFEQIDDYNPDTAMP 348 (352)
T ss_dssp HHCEEEETTTTEEEESSCCCSSCCGGGC-CTT-CC-CCC-HHHHHHH--HHTCBCTTTCCBCCCCCTTCC--
T ss_pred CCCEEECCCCCeEeeCCCCCCCCChhhh-hhc-CC-CCC-HHHHHHH--hCCCCCcccccccccCCCCCCCC
Confidence 999887664221111221 122222 233 11 122 2222222 13344567777888888777663
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=2e-45 Score=336.74 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=167.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHcCCce---EEEEeCCCCchhhHHHHHHHhchhccH-------HHHHHHHHcCCHHHHH
Q 021529 4 NEAGEVTSHLQGMFTRTIRLLEAGMKP---IYVFDGQPPDLKKQELAKRYSKRADAT-------DDLAEAVEAGNKEDIE 73 (311)
Q Consensus 4 ~~~G~~t~a~~g~~~~l~~ll~~~i~P---v~VFDG~~~~~K~~~~~~yk~~R~~~~-------~~l~~~~~~g~~~~~~ 73 (311)
|++|.| |++||++++.++++. ++| ++||||.+++||++.+++||++|+++| +++
T Consensus 36 ~~~G~p--av~Gf~~~l~~ll~~-~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L------------- 99 (290)
T 1exn_A 36 NNSKKP--FASSYVSTIQSLAKS-YSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKAL------------- 99 (290)
T ss_dssp HCSSSC--CHHHHHHHHHHHHHH-TTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHH-------------
T ss_pred CCCCch--HHHHHHHHHHHHHHH-cCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhH-------------
Confidence 578998 999999999999985 777 789999999999999999999999999 666
Q ss_pred HHhhhhccCCHHH-HHHHHHHHHH--hCCceEeccC-cHHHHHHHHHHc----CceEEEecCCCccccccCCeeEEEeec
Q 021529 74 KFSKRTVKVTKQH-NDDCKRLLKL--MGVPVVEAPS-EAEAQCAALCKS----GQVYAVASEDMDSLTFGAPRFLRHLMD 145 (311)
Q Consensus 74 ~~~~~~~~v~~~~-~~~i~~lL~~--~gi~~i~apg-EADa~iA~L~~~----g~v~~V~S~DsD~l~~~~~~v~~~l~~ 145 (311)
..| ++.++++|++ +|||++.+|| ||||+||+|+++ |..++|+|+|+|++||++++|.. +.
T Consensus 100 ----------~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS~DkDl~Qlv~~~v~v--~~ 167 (290)
T 1exn_A 100 ----------DEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLISTDGDWDTLLTDKVSR--FS 167 (290)
T ss_dssp ----------HHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEECSCGGGGGGCCSSEEE--EE
T ss_pred ----------HHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEeCCCChhhcCCCCEEE--EE
Confidence 677 9999999999 9999999999 999999999985 77777999999999999998732 33
Q ss_pred CCCCCcccEEEeHHHHHHHcCCCH-HHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhh-cCCCCC
Q 021529 146 PSSRKIPVMEFEVAKILEELNLTM-DQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPE 221 (311)
Q Consensus 146 ~~~~~~~~~~~~~~~v~~~~gl~~-~q~~d~~~L~G--~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~-~~~~~~ 221 (311)
+. ....++.+.+.+++|++| +||+|+++|+| ||+.+||||||||||.+||++|||+|+|+++++++ +.++.+
T Consensus 168 ~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~ 243 (290)
T 1exn_A 168 FT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQ 243 (290)
T ss_dssp TT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHH
T ss_pred CC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHH
Confidence 32 357899999999999999 99999999999 77777789999999999999999999999999877 554444
Q ss_pred CCc
Q 021529 222 DWP 224 (311)
Q Consensus 222 ~~~ 224 (311)
++.
T Consensus 244 ~L~ 246 (290)
T 1exn_A 244 NLN 246 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=1.3e-46 Score=388.41 Aligned_cols=234 Identities=28% Similarity=0.397 Sum_probs=203.8
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHc-CCceEEEEeCCCCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHHHhhhhc
Q 021529 2 LTNEAGEVTSHLQGMFTRTIRLLEA-GMKPIYVFDGQPPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEKFSKRTV 80 (311)
Q Consensus 2 l~~~~G~~t~a~~g~~~~l~~ll~~-~i~Pv~VFDG~~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~~~~~~~ 80 (311)
|++++|.|||+++||++++.++++. ++.|+|||||.+++||+++++.||++|+++|+++
T Consensus 33 l~~~~G~~t~av~gf~~~l~~ll~~~~~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~l-------------------- 92 (832)
T 1bgx_T 33 LTTSRGEPVQAVYGFAKSLLKALKEDGDAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDF-------------------- 92 (832)
T ss_dssp CBCSSSCBCSSSTTHHHHHHHGGGTCCSCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTTS--------------------
T ss_pred cccCCCcEehHHHHHHHHHHHHHHHcCCeEEEEEcCCCccccccchHHHHhccccChHHH--------------------
Confidence 6899999999999999999999974 5889999999999999999999999999999888
Q ss_pred cCCHHHHHHHHHHHHHhCCceEeccC-cHHHHHHHHHH----cCceEEEecCCCccccccCCeeEEEeecCCCCCcccEE
Q 021529 81 KVTKQHNDDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVME 155 (311)
Q Consensus 81 ~v~~~~~~~i~~lL~~~gi~~i~apg-EADa~iA~L~~----~g~v~~V~S~DsD~l~~~~~~v~~~l~~~~~~~~~~~~ 155 (311)
..|++.++++|+++|||++++|| ||||+||+|++ .|..++|+|+|+|++||++++|.+.. + ++ ..
T Consensus 93 ---~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~~~v~~~~--~-~g----~~ 162 (832)
T 1bgx_T 93 ---PRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLSDRIHVLH--P-EG----YL 162 (832)
T ss_dssp ---TTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCCTTBCBCC--S-SS----CC
T ss_pred ---HHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCcCCEEEEe--C-CC----cE
Confidence 67889999999999999999998 99999999988 68877899999999999999986432 2 21 56
Q ss_pred EeHHHHHHHcCCCHHHHHHHHHHhC--CCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhcCCCCCCCch-HH----H
Q 021529 156 FEVAKILEELNLTMDQFIDLCILSG--CDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPY-QE----A 228 (311)
Q Consensus 156 ~~~~~v~~~~gl~~~q~~d~~~L~G--~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~~~~~~~~~~~-~~----~ 228 (311)
|+.+.+.+++|++|+||+|+|+|+| ||+.+||||||+|||++||++|||+|+|++++++++.++++++.. .+ +
T Consensus 163 ~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls 242 (832)
T 1bgx_T 163 ITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLS 242 (832)
T ss_dssp BCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSG
T ss_pred EcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHH
Confidence 8999999999999999999999999 888888999999999999999999999999999877766665542 11 3
Q ss_pred HHHh-cCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCH
Q 021529 229 RRLF-KEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 268 (311)
Q Consensus 229 ~~~~-~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~ 268 (311)
+.+. ..++++++.+++ .|..||.++|.+|| ++++|+.
T Consensus 243 ~~L~~i~~d~~~~~~~~--~~~~~d~~~l~~~~-~~~~f~~ 280 (832)
T 1bgx_T 243 WDLAKVRTDLPLEVDFA--KRREPDRERLRAFL-ERLEFGS 280 (832)
T ss_dssp GGSSCCCSCCCCCCCCC--CCCCCCHHHHHHHH-TTTTCCS
T ss_pred HHHHhhccCCCCCCChh--HcCCccHHHHHHHH-HHcCCHH
Confidence 3333 356666655664 89999999999999 7999963
No 11
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.97 E-value=6.3e-33 Score=252.49 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=131.5
Q ss_pred CCCCCCCcchHHHH-HHHHHHHHHHc--CCce---EEEEeCC-CCchhhHHHHHHHhchhccHHHHHHHHHcCCHHHHHH
Q 021529 2 LTNEAGEVTSHLQG-MFTRTIRLLEA--GMKP---IYVFDGQ-PPDLKKQELAKRYSKRADATDDLAEAVEAGNKEDIEK 74 (311)
Q Consensus 2 l~~~~G~~t~a~~g-~~~~l~~ll~~--~i~P---v~VFDG~-~~~~K~~~~~~yk~~R~~~~~~l~~~~~~g~~~~~~~ 74 (311)
+++++|.||||++| |++++.++++. +.+| +++||+. +++||++.|+.||++|+++|+++. .+.+..
T Consensus 32 f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~-----~Q~~~l-- 104 (305)
T 3h7i_A 32 FPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREEST-----WDWEGY-- 104 (305)
T ss_dssp SCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCS-----SCHHHH--
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHH-----HHHHHh--
Confidence 67899999999988 99999999863 2466 4579987 689999999999999999999981 000000
Q ss_pred HhhhhccCCHHHH-HHHHHHHHHhCCceEeccC-cHHHHHHHHHH----cCceEEEecCCCccccccC-CeeEEEeecCC
Q 021529 75 FSKRTVKVTKQHN-DDCKRLLKLMGVPVVEAPS-EAEAQCAALCK----SGQVYAVASEDMDSLTFGA-PRFLRHLMDPS 147 (311)
Q Consensus 75 ~~~~~~~v~~~~~-~~i~~lL~~~gi~~i~apg-EADa~iA~L~~----~g~v~~V~S~DsD~l~~~~-~~v~~~l~~~~ 147 (311)
..|+ +.++++|+++|||++..|| ||||+||+|++ .|.-+.|+|+|+|++|++. ++|. ++.+.
T Consensus 105 ---------~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgDKDl~QLv~~~~V~--~~~~~ 173 (305)
T 3h7i_A 105 ---------FESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSDGDFTQLHKYPNVK--QWSPM 173 (305)
T ss_dssp ---------HHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSSCCCGGGGGSSSEE--EEETT
T ss_pred ---------hhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCCCCccccccCCCeE--EEecC
Confidence 2344 7899999999999999999 99999999987 4666679999999999998 6763 23332
Q ss_pred CCCcccEEEeHHHHHHHcCCCHHHHHHHHHHhCCCCCCCC---CCccHH
Q 021529 148 SRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSI---RGIGGQ 193 (311)
Q Consensus 148 ~~~~~~~~~~~~~v~~~~gl~~~q~~d~~~L~G~D~~d~i---pgiG~k 193 (311)
. .+.|.+++|+ |+|++|+++|+| |.+||| ||||++
T Consensus 174 ~---------~~~V~ek~Gv-P~q~iD~~aL~G-DsSDNIPGVpGIG~~ 211 (305)
T 3h7i_A 174 H---------KKWVKIKSGS-AEIDCMTKILKG-DKKDNVASVKVRSDF 211 (305)
T ss_dssp T---------TEEECSSCSC-HHHHHHHHHHHC-BGGGTBCCTTSCTTH
T ss_pred C---------HHHHHHHhCC-HHHHhhHHheeC-ccccCCCCCCcCCcc
Confidence 1 1335678999 999999999999 999986 578875
No 12
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=97.87 E-value=0.00014 Score=77.05 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=60.7
Q ss_pred CCceEec----cCcHHHHHHHHHHc---------CceEEEecCCCcccccc----CCee--EEEeecCCC--C-----Cc
Q 021529 98 GVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APRF--LRHLMDPSS--R-----KI 151 (311)
Q Consensus 98 gi~~i~a----pgEADa~iA~L~~~---------g~v~~V~S~DsD~l~~~----~~~v--~~~l~~~~~--~-----~~ 151 (311)
++.+|.+ |||+|.=|-.+.+. +..++|++.|.|+++++ .+++ +|.-...+. . ..
T Consensus 162 ~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~ 241 (1140)
T 2y35_A 162 RCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEET 241 (1140)
T ss_dssp SSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGC
T ss_pred ceEEEEeCCCCCCchHHHHHHHHHHHhhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeeccccccccccccccccc
Confidence 6777765 89999766555441 35678999999999986 2443 221111111 0 12
Q ss_pred ccEEEeHHHHHHH----c--------CCC----HHHHHHHHHHhCCCCCCCCCCccHH
Q 021529 152 PVMEFEVAKILEE----L--------NLT----MDQFIDLCILSGCDYCDSIRGIGGQ 193 (311)
Q Consensus 152 ~~~~~~~~~v~~~----~--------gl~----~~q~~d~~~L~G~D~~d~ipgiG~k 193 (311)
.+..++...+.+. + .++ -+.|+-+|.|+||||.+++|++.+.
T Consensus 242 ~f~~l~i~~lReyL~~ef~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~ 299 (1140)
T 2y35_A 242 RFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHIS 299 (1140)
T ss_dssp EEEEEEHHHHHHHHHHHGGGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTT
T ss_pred ceEEEEehHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHhCCccCCCCCccccC
Confidence 3456676544332 2 233 3567789999999999999988643
No 13
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=97.51 E-value=0.0006 Score=69.88 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=60.9
Q ss_pred CCceEec----cCcHHHHHHHHHHc---------CceEEEecCCCcccccc----CCee--EEEe--ecCCC--------
Q 021529 98 GVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFG----APRF--LRHL--MDPSS-------- 148 (311)
Q Consensus 98 gi~~i~a----pgEADa~iA~L~~~---------g~v~~V~S~DsD~l~~~----~~~v--~~~l--~~~~~-------- 148 (311)
++.+|.+ |||++.-|....+. +..++|++.|.|+++++ .+++ +|-- +..+.
T Consensus 195 ~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLImL~LatHep~f~ILRE~v~~~~~q~~~~~~~~ 274 (899)
T 3fqd_A 195 NVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVFFQQGSTKKTKEER 274 (899)
T ss_dssp TCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHHHHHHTTCSSEEEEEECCC---------CTTT
T ss_pred cceEEEeCCCCCCccHHHHHHHHHHHhcCCCCCCCCeEEEEccCccHhHHhhhccCCceEEEeeecccCcCccccchhhh
Confidence 6778876 89999877766552 35678999999999997 2443 3311 11000
Q ss_pred ----------------CCcccEEEeHHHHHH----HcCC-------C----HHHHHHHHHHhCCCCCCCCCCccH
Q 021529 149 ----------------RKIPVMEFEVAKILE----ELNL-------T----MDQFIDLCILSGCDYCDSIRGIGG 192 (311)
Q Consensus 149 ----------------~~~~~~~~~~~~v~~----~~gl-------~----~~q~~d~~~L~G~D~~d~ipgiG~ 192 (311)
...++.+++..-+.+ ++.+ + -+.|+.+|.|+||||.+++|.+-+
T Consensus 275 ~~~~k~~~~~~~~~~~~~~~f~~l~i~iLREYL~~E~~~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I 349 (899)
T 3fqd_A 275 LGIKRLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDI 349 (899)
T ss_dssp TTCCBTTC----------CCEEEEEHHHHHHHHHHHHCCTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCG
T ss_pred ccccccccccccccccccCceEEEeHHHHHHHHHHHhcccCCCCCchhhhhhhhhhhhhHhhCcccCCCCCccCc
Confidence 002345666655444 3332 2 257888999999999999997653
No 14
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=97.37 E-value=0.001 Score=70.19 Aligned_cols=177 Identities=21% Similarity=0.296 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCce----EEEEeCCCCchhhHHHHHHHhchhc-cHHHHHHHHHcCCHHH-HHHHhhhhccCCHHHHH
Q 021529 15 GMFTRTIRLLEAGMKP----IYVFDGQPPDLKKQELAKRYSKRAD-ATDDLAEAVEAGNKED-IEKFSKRTVKVTKQHND 88 (311)
Q Consensus 15 g~~~~l~~ll~~~i~P----v~VFDG~~~~~K~~~~~~yk~~R~~-~~~~l~~~~~~g~~~~-~~~~~~~~~~v~~~~~~ 88 (311)
.++..+-+|+.. ++| .+++||.+|-.|......|+-+... +.+...++...|.... ...|-..|+..=.+.+.
T Consensus 63 ~if~yid~l~~~-vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~ 141 (1155)
T 3pie_A 63 KIFSYIDHLFHT-IKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQKAIENGDELPKGEPFDSNAITPGTEFMA 141 (1155)
T ss_pred HHHHHHHHHHHh-cCcceEEEEEecCCCChhHHHHHHHHHHHhhhhhhHHHHHHHhcCCcCCcccccccccccCCcHHHH
Confidence 344444445443 677 3479999986665554444322221 1222334445553211 11222223322122333
Q ss_pred HHHHHHHH------------hCCceEec----cCcHHHHHHHHHHc---------CceEEEecCCCccccccC----Cee
Q 021529 89 DCKRLLKL------------MGVPVVEA----PSEAEAQCAALCKS---------GQVYAVASEDMDSLTFGA----PRF 139 (311)
Q Consensus 89 ~i~~lL~~------------~gi~~i~a----pgEADa~iA~L~~~---------g~v~~V~S~DsD~l~~~~----~~v 139 (311)
.+...|+. -++.+|.+ |||+|.=|....+. +..++|++.|.|+++++- +++
T Consensus 142 ~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f 221 (1155)
T 3pie_A 142 KLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHF 221 (1155)
T ss_pred HHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCCccHHHHHHHHHHhccCCCCCCCCeEEEeccChhHHHhhhccCCCcE
Confidence 33333321 25667766 89999877666542 346789999999999972 332
Q ss_pred --EEEe--ecCCC------CCcccEEEeHHHHHHHc-------------CCCH----HHHHHHHHHhCCCCCCCCCCccH
Q 021529 140 --LRHL--MDPSS------RKIPVMEFEVAKILEEL-------------NLTM----DQFIDLCILSGCDYCDSIRGIGG 192 (311)
Q Consensus 140 --~~~l--~~~~~------~~~~~~~~~~~~v~~~~-------------gl~~----~q~~d~~~L~G~D~~d~ipgiG~ 192 (311)
+|.- +.... ...++.+++..-+.+.+ .++- +.|+-+|.|+||||.+++|.+.+
T Consensus 222 ~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I 301 (1155)
T 3pie_A 222 CLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHL 301 (1155)
T ss_pred EEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhccccCCCccHhHhhcceeeehhhhCcccCCCCCccCc
Confidence 3321 11111 01235567765443321 1222 45777999999999999998754
No 15
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=97.00 E-value=0.00032 Score=49.00 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
+.|||||++++..|++.|||+++|.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~ 32 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAA 32 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHT
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHH
Confidence 57999999999999999999998864
No 16
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=96.65 E-value=0.0011 Score=49.01 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
+.|||||+|++..||+.|||+++|.+.
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~A 47 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAAL 47 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHHS
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 368999999999999999999998653
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.60 E-value=0.005 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
+|||||+++|.+|++.||+++++.+.
T Consensus 28 ~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 28 TIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 68999999999999999999888654
No 18
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.57 E-value=0.0093 Score=44.13 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
.+|||||+++|.+|++.||+++++...
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 369999999999999999999888653
No 19
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=95.50 E-value=0.011 Score=41.98 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.3
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
+|||||+++|.+|+..||+++++...
T Consensus 18 ~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 18 GLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 58999999999999999999888653
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.20 E-value=0.014 Score=43.43 Aligned_cols=25 Identities=16% Similarity=0.494 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
+|||||+++|.+|++.||+++++++
T Consensus 36 ~IpgIG~~~A~~Ll~~fgs~~~l~~ 60 (91)
T 2a1j_B 36 TVKSVNKTDSQTLLTTFGSLEQLIA 60 (91)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHHS
T ss_pred cCCCCCHHHHHHHHHHCCCHHHHHh
Confidence 5899999999999999999988764
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=95.07 E-value=0.012 Score=51.13 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
++|||||+++|..|++.|||++++.+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 68999999999999999999998754
No 22
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.98 E-value=0.018 Score=50.30 Aligned_cols=29 Identities=28% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 183 YCDSIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 183 ~~d~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
-.++|||||+++|..|++.|||++++.+.
T Consensus 174 ~L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 174 VLDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp -----------------------------
T ss_pred cccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 34689999999999999999999987643
No 23
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=90.70 E-value=0.11 Score=44.73 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.5
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
+|||||+++|..|++.||+++++++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~ 190 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFT 190 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 5899999999999999999888753
No 24
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=90.08 E-value=0.14 Score=43.55 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHhhc----CCCCCCCchHHHHHHh--cCCCCCCccccccCCCCCCCHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF--KEPEVVTDEEQLQIKWSAPDEEGLINFL 260 (311)
Q Consensus 187 ipgiG~ktA~~li~~~gsle~i~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~d~~~l~~~~ 260 (311)
|||||||+|..+++.|++ +.+.+.+.... .++|- +....|..++ ++..+.....-.. .......+...+-|
T Consensus 77 v~GIGpk~A~~iL~~f~~-~~l~~aI~~~d~~~L~~vpG-IG~K~A~rI~~~lk~k~~~~~~~~~-~~~~~~~~ea~~AL 153 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPP-RLLARALLEGDARLLTSASG-VGRRLAERIALELKGKVPPHLLAGE-KVESEAAEEAVMAL 153 (191)
T ss_dssp SSCCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHTTSTT-CCHHHHHHHHHHHTTTSCSCC-------------------
T ss_pred CCCcCHHHHHHHHHhCCh-HHHHHHHHhCCHHHHHhCCC-CCHHHHHHHHHHHHHhhcccccccc-ccccccHHHHHHHH
Confidence 999999999999999997 44443332111 12221 2223333333 2222211000000 00011123444555
Q ss_pred HhhcCCCHHHHHHHHHHH
Q 021529 261 VSENGFNSDRVTKAIEKI 278 (311)
Q Consensus 261 ~~~~~f~~~~v~~~~~~~ 278 (311)
..+||+...+.+++..+
T Consensus 154 -~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 154 -AALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------
T ss_pred -HHcCCCHHHHHHHHHHH
Confidence 48999998888888765
No 25
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=88.87 E-value=0.26 Score=46.59 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.8
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
.||||||.+|..||.+|||++.+..
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~ 496 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVRE 496 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHh
Confidence 4899999999999999999998765
No 26
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.73 E-value=0.24 Score=42.42 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=17.3
Q ss_pred CCCccHHHHHHHHHHcCC
Q 021529 187 IRGIGGQTALKLIRQHGS 204 (311)
Q Consensus 187 ipgiG~ktA~~li~~~gs 204 (311)
|||||||+|..+++.|++
T Consensus 78 V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSA 95 (203)
T ss_dssp SSSCCHHHHHHHHHHSCH
T ss_pred CCCcCHHHHHHHHhhCCh
Confidence 899999999999999997
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=86.94 E-value=0.5 Score=40.68 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=53.0
Q ss_pred HHHcCCCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHHhhc----CCCCCCCchHHHHHHh--cCC
Q 021529 162 LEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRER----YQIPEDWPYQEARRLF--KEP 235 (311)
Q Consensus 162 ~~~~gl~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~~~~----~~~~~~~~~~~~~~~~--~~~ 235 (311)
...||+....=.++..++. +|+|||||+|..++..|+. +.+...+.... .++|- +-.+.+..+. ++.
T Consensus 73 ~~LyGF~~~~Er~lf~~L~-----sv~GIGpk~A~~Ils~~~~-~~l~~aI~~~d~~~L~~vpG-IG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLL-----SVSGVGPRLAMAALAVHDA-PALRQVLADGNVAALTRVPG-IGKRGAERMVLELRD 145 (212)
T ss_dssp EEEEEESSHHHHHHHHHHH-----TSTTCCHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHTSTT-CCHHHHHHHHHHHTT
T ss_pred cceEecCcHHHHHHHHHhc-----CcCCcCHHHHHHHHHhCCH-HHHHHHHHhCCHHHHhhCCC-CCHHHHHHHHHHHHH
Confidence 4467774444444444444 2999999999999999884 44443332100 01111 1122222222 111
Q ss_pred CCCCccccccCCCCCC-CHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 021529 236 EVVTDEEQLQIKWSAP-DEEGLINFLVSENGFNSDRVTKAIEKI 278 (311)
Q Consensus 236 ~v~~~~~~~~~~~~~~-d~~~l~~~~~~~~~f~~~~v~~~~~~~ 278 (311)
.+........-..... ..+...+-| ..+||+...+.+++..+
T Consensus 146 kl~~~~~~~~~~~~~~~~~~ea~~AL-~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 146 KVGVAATGGALSTNGHAVRSPVVEAL-VGLGFAAKQAEEATDTV 188 (212)
T ss_dssp TCC-------------CCHHHHHHHH-HHTTCCHHHHHHHHHHH
T ss_pred hhccccccccccccCcccHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence 1110000000000111 234455555 48999999999998876
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.11 E-value=0.32 Score=38.66 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=17.8
Q ss_pred CCCccHHHHHHHHHH--cCCHHHHH
Q 021529 187 IRGIGGQTALKLIRQ--HGSIETIL 209 (311)
Q Consensus 187 ipgiG~ktA~~li~~--~gsle~i~ 209 (311)
+|||||++|.++|+. |.++|+++
T Consensus 68 LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 68 YRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp STTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 699999999999953 55666653
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=79.57 E-value=0.37 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred CCCCCccHHHHHHHHHH-cCCHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQ-HGSIETIL 209 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~-~gsle~i~ 209 (311)
..||||||++|..|+.. |++++.|.
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp --------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 36899999999999998 88988875
No 30
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=75.70 E-value=1.5 Score=44.12 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
+|||||+++|..|++.|||++++.+
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~ 540 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEA 540 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred cccCccHHHHHHHHHHcCCHHHHHh
Confidence 6899999999999999999998754
No 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=75.48 E-value=0.57 Score=46.61 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=0.0
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
||||||+++|..|++.|||++.+.+.
T Consensus 533 GIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 533 SIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp --------------------------
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 57999999999999999999887654
No 32
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=75.28 E-value=1.8 Score=39.84 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETILEN 211 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~~~ 211 (311)
+|||||||||.+|..+ +.|++++.+.
T Consensus 100 ~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 5899999999999886 3488888764
No 33
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=74.15 E-value=1.5 Score=30.77 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.9
Q ss_pred CCCCccHHHHHHHHHHc
Q 021529 186 SIRGIGGQTALKLIRQH 202 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (311)
.|||||+++|.+++..+
T Consensus 31 ~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TSTTCCHHHHHHHHHTC
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 47999999999999864
No 34
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=73.57 E-value=2.5 Score=38.13 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=26.7
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~~~~~ 214 (311)
.||||+++.|..++++|+|+..++++.+.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~ 269 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDK 269 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 47999999999999999999999998865
No 35
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=73.50 E-value=4.3 Score=39.99 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=19.3
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETILENI 212 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~~~~ 212 (311)
+|||||||+|.+|+.. +.|++++.+.+
T Consensus 101 ~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 101 GVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 4778888888888775 45777776654
No 36
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=73.01 E-value=5.4 Score=37.24 Aligned_cols=41 Identities=34% Similarity=0.365 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHH
Q 021529 167 LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENIN 213 (311)
Q Consensus 167 l~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~~gsle~i~~~~~ 213 (311)
++.++...+..|.- +||||++++.+|++.||+.+++++.+.
T Consensus 17 m~~~e~~~wL~L~~------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 17 LTEAQRIDWMRLIR------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp SCHHHHHHHHHHHT------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 45566666666664 689999999999999999999988654
No 37
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=72.39 E-value=1.7 Score=40.52 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQHGSIETILEN 211 (311)
Q Consensus 187 ipgiG~ktA~~li~~~gsle~i~~~ 211 (311)
||+||++.|-+|+.+|||+++++++
T Consensus 320 IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 320 VARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp TSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 6999999999999999999998754
No 38
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=72.36 E-value=1.8 Score=39.74 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~~ 210 (311)
+|||||||||.+|..+ +.|++++.+
T Consensus 102 ~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 102 RVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 5899999999999887 348888776
No 39
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=72.04 E-value=2.2 Score=39.94 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETILE 210 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~~ 210 (311)
+|||||||||.+|.++ +.|++++.+
T Consensus 125 ~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 5899999999999886 347888775
No 40
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=70.63 E-value=1.1 Score=33.52 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.8
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHH
Q 021529 186 SIRGIGGQTALKLIRQ--HGSIETI 208 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~--~gsle~i 208 (311)
.+||||++.|.+++.. |.+++++
T Consensus 30 ~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 30 QYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 3799999999999983 3344443
No 41
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=70.55 E-value=2.2 Score=39.57 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.9
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETIL 209 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~ 209 (311)
+|||||||||.+|.++ +.|++++.
T Consensus 106 ~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 5899999999999886 23788776
No 42
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=69.57 E-value=3.1 Score=41.02 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCCccHHHHHHHHHH--cCCHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ--HGSIETILENIN 213 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~--~gsle~i~~~~~ 213 (311)
+|+|||||+|..++.. +.+++++.+.+.
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~ 126 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAALD 126 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4788999999998886 467888776653
No 43
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=68.66 E-value=3.8 Score=34.75 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHhCCCCC-----CCCCCccHHHHHHHHHH-----cCCHHHHHHHH
Q 021529 166 NLTMDQFIDLCILSGCDYC-----DSIRGIGGQTALKLIRQ-----HGSIETILENI 212 (311)
Q Consensus 166 gl~~~q~~d~~~L~G~D~~-----d~ipgiG~ktA~~li~~-----~gsle~i~~~~ 212 (311)
.-..+.|+++..-+|--.. ..+||||+++|.++|.. |.|+|++.+.+
T Consensus 111 ~~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV 167 (205)
T 2i5h_A 111 KQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV 167 (205)
T ss_dssp HTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHS
T ss_pred HhchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhc
Confidence 3456788888665552211 14799999999999974 67888876654
No 44
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=68.55 E-value=2.3 Score=42.68 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=22.0
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHH
Q 021529 186 SIRGIGGQTALKLIRQHGSIETIL 209 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~ 209 (311)
||||||+++|..|++.|||++.+.
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~ 534 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLL 534 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHT
T ss_pred ccCCccHHHHHHHHHHcCCHHHHH
Confidence 689999999999999999998874
No 45
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=65.02 E-value=4.3 Score=40.17 Aligned_cols=18 Identities=11% Similarity=-0.032 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHHHHHHH
Q 021529 8 EVTSHLQGMFTRTIRLLE 25 (311)
Q Consensus 8 ~~t~a~~g~~~~l~~ll~ 25 (311)
.....+..|..|+.+.+.
T Consensus 86 ~~~~el~~~~~r~~~~l~ 103 (586)
T 4glx_A 86 FDEESFLAFNKRVQDRLK 103 (586)
T ss_dssp CSHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 445677777777776653
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=58.43 E-value=4.9 Score=34.40 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=20.0
Q ss_pred HHhCCCCC--CCCCCccHHHHHHHHHHcCC
Q 021529 177 ILSGCDYC--DSIRGIGGQTALKLIRQHGS 204 (311)
Q Consensus 177 ~L~G~D~~--d~ipgiG~ktA~~li~~~gs 204 (311)
++.+ |.. -.|||||+|||.+++.++.+
T Consensus 117 I~~~-d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 117 LADG-NVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HHTT-CHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred HHhC-CHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 4444 544 26899999999999988643
No 47
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=58.28 E-value=4.2 Score=34.78 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (311)
.+||||+|+|.++.-.
T Consensus 30 ~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 30 KLPGIGPKTAQRLAFF 45 (212)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 6799999999998654
No 48
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=52.82 E-value=5.8 Score=34.25 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (311)
.+||||+|+|.++.-.
T Consensus 16 ~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 16 RLPGIGPKSAQRLAFH 31 (228)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 5799999999998654
No 49
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=50.28 E-value=8.1 Score=32.43 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.0
Q ss_pred CCCCccHHHHHHHHHHcC
Q 021529 186 SIRGIGGQTALKLIRQHG 203 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~g 203 (311)
.+||||+|+|.+++..+.
T Consensus 111 ~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 111 SASGVGRRLAERIALELK 128 (191)
T ss_dssp TSTTCCHHHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHHH
Confidence 689999999999998764
No 50
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=49.35 E-value=8.5 Score=28.35 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCCccHHHHHHHHHHc
Q 021529 186 SIRGIGGQTALKLIRQH 202 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (311)
.|||||+++|.+++..+
T Consensus 44 ~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HSTTCCHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHH
Confidence 58999999999999865
No 51
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=49.34 E-value=27 Score=28.01 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCceEecc----------CcHHHHHHH----HHHcCceEEEecCCCcccccc
Q 021529 87 NDDCKRLLKLMGVPVVEAP----------SEAEAQCAA----LCKSGQVYAVASEDMDSLTFG 135 (311)
Q Consensus 87 ~~~i~~lL~~~gi~~i~ap----------gEADa~iA~----L~~~g~v~~V~S~DsD~l~~~ 135 (311)
....++.|+..|+.++..| +.+|-.|+. ++.+-...+++|+|+|+.-+.
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv 125 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLV 125 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHH
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHH
Confidence 3456778888999776544 355544432 232334667999999998764
No 52
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=48.64 E-value=11 Score=33.31 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=60.7
Q ss_pred eHHHHHHHcCCCHHH-------HHHHHHHhCCCCCC-------C------------C--------CCccHHHHHHHHHHc
Q 021529 157 EVAKILEELNLTMDQ-------FIDLCILSGCDYCD-------S------------I--------RGIGGQTALKLIRQH 202 (311)
Q Consensus 157 ~~~~v~~~~gl~~~q-------~~d~~~L~G~D~~d-------~------------i--------pgiG~ktA~~li~~~ 202 (311)
+...+.++.|++|+. |-.++.++.+|.-. | | .|+|-|||-.|++.|
T Consensus 352 tlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllraf 431 (519)
T 2csb_A 352 TLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAF 431 (519)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHh
Confidence 345677888998853 33456666656321 1 1 499999999999999
Q ss_pred CCHHHHHHHHHhhc---CCCCCCCchHHHHHHhcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCC
Q 021529 203 GSIETILENINRER---YQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFN 267 (311)
Q Consensus 203 gsle~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~ 267 (311)
|+.+.+-+-..... ..--+..- .-.+...|+-...+ +....+|.+....++.+..|++
T Consensus 432 gnpervkqlarefeieklasvegvg-----ervlrslvpgyasl--isirgidreraerllkkyggys 492 (519)
T 2csb_A 432 GNPERVKQLAREFEIEKLASVEGVG-----ERVLRSLVPGYASL--ISIRGIDRERAERLLKKYGGYS 492 (519)
T ss_dssp SSHHHHHHHHHTTCHHHHHTSTTCS-----HHHHHHHSTTHHHH--HTSTTCCHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHhHHHHhhccchH-----HHHHHHhccchhhh--eeeccccHHHHHHHHHHhCChh
Confidence 99998766543210 00001110 01111223322222 5677899999999985544553
No 53
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=46.94 E-value=13 Score=36.48 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHcCC-CHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHH
Q 021529 160 KILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQ 201 (311)
Q Consensus 160 ~v~~~~gl-~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~~ 201 (311)
.+.+.+|+ +++++.. ++..| | ...+||||+|||.+++..
T Consensus 108 ~~~~~lg~~~~~~l~~-a~~~~-~-l~~~~GiG~k~a~~i~~~ 147 (575)
T 3b0x_A 108 LLYEGLGIDSLEKLKA-ALDRG-D-LTRLKGFGPKRAERIREG 147 (575)
T ss_dssp HHHHTSCCCSHHHHHH-HHHHT-G-GGGSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHH-HHHcC-C-cccCCCCCccHHHHHHHH
Confidence 34445665 7888766 44456 6 446899999999999654
No 54
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=44.85 E-value=11 Score=31.75 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=14.3
Q ss_pred CCCCccHHHHHHHHHHcC
Q 021529 186 SIRGIGGQTALKLIRQHG 203 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~g 203 (311)
.+||||++||--++.-.+
T Consensus 121 ~lpGIG~kTA~~il~~~~ 138 (207)
T 3fhg_A 121 NIKGIGMQEASHFLRNVG 138 (207)
T ss_dssp TSTTCCHHHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHHHhC
Confidence 579999999988876434
No 55
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=43.30 E-value=11 Score=31.92 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.0
Q ss_pred CCCCccHHHHHHHHHHc
Q 021529 186 SIRGIGGQTALKLIRQH 202 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (311)
.+||||+|+|.+++..+
T Consensus 112 ~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 112 KLPGIGKKTAERLIVEM 128 (203)
T ss_dssp TSTTCCHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHH
Confidence 58999999999998764
No 56
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=41.15 E-value=13 Score=31.65 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.6
Q ss_pred CCCCccHHHHHHHHHHc
Q 021529 186 SIRGIGGQTALKLIRQH 202 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~ 202 (311)
++||||+|||--++...
T Consensus 129 ~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 129 NIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HSTTCCHHHHHHHHHHT
T ss_pred hCCCCCHHHHHHHHHHc
Confidence 57999999998777644
No 57
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=40.01 E-value=3.2 Score=37.44 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 021529 186 SIRGIGGQTALKLIRQHGSIETILENINR 214 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~gsle~i~~~~~~ 214 (311)
.|||||+++|..++.+|+++..+++..+.
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~ 265 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDA 265 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHh
Confidence 58999999999999999999999998875
No 58
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=39.84 E-value=46 Score=32.09 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCceEeccCcHHHHHHHHHHc
Q 021529 86 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (311)
Q Consensus 86 ~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~ 118 (311)
-+..+.+-|+.+|++.++.-|++.++ ..|+++
T Consensus 96 sL~dL~~~L~~lG~~L~v~~G~p~~v-~~L~~~ 127 (506)
T 3umv_A 96 GLRRLAADAAARHLPFFLFTGGPAEI-PALVQR 127 (506)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTHH-HHHHHH
T ss_pred HHHHHHHHHHHcCCceEEEecChHHH-HHHHHh
Confidence 34556666667777777766666666 666553
No 59
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=39.60 E-value=12 Score=32.03 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.1
Q ss_pred CCCCccHHHHHHHHHHcC
Q 021529 186 SIRGIGGQTALKLIRQHG 203 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~~g 203 (311)
++||||+|||--++.-+|
T Consensus 134 ~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 134 NAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp HSTTCCHHHHHHHHHTTT
T ss_pred hCCCCCHHHHHHHHHHcC
Confidence 469999999987776444
No 60
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=38.70 E-value=13 Score=31.59 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.4
Q ss_pred CCCCccHHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (311)
.+||||++||--++.-
T Consensus 125 ~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 125 DQKGIGKESADAILCY 140 (218)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH
Confidence 4799999999887764
No 61
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=38.19 E-value=34 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.014 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCceEeccCcHHHHHHHHHHcCceEEEecCC
Q 021529 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASED 128 (311)
Q Consensus 87 ~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~g~v~~V~S~D 128 (311)
+..+.+-|+.+|++.++..|++.+.+..|++ |...++...|
T Consensus 58 L~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~-~~~~v~~~~~ 98 (440)
T 2e0i_A 58 LLELDDELRKKGSRLNVFFGEAEKVVSRFFN-KVDAIYVNED 98 (440)
T ss_dssp HHHHHHHHHTTTCCCEEEESCHHHHHHHHCT-TCSEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEECCHHHHHHHHHc-CCCEEEEecc
Confidence 4555666666677777666666666666666 5443333333
No 62
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=37.08 E-value=1.5e+02 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCceEecc-------------CcHHHHHHHHHHcCceEEEecCCCccccc
Q 021529 85 QHNDDCKRLLKLMGVPVVEAP-------------SEAEAQCAALCKSGQVYAVASEDMDSLTF 134 (311)
Q Consensus 85 ~~~~~i~~lL~~~gi~~i~ap-------------gEADa~iA~L~~~g~v~~V~S~DsD~l~~ 134 (311)
+.+..++++.+..+|++-... +|.|+.+-.+|+.--+ .++|+|.-+-..
T Consensus 58 e~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a-~lvTnD~~l~kv 119 (142)
T 3i8o_A 58 EELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNS-ILLTSDWIQYNL 119 (142)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTC-EEEESCHHHHHH
T ss_pred HHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCC-EEEcCCHHHHHH
Confidence 345556666666677754432 4899999999986434 378998776543
No 63
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=35.85 E-value=27 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHcC
Q 021529 187 IRGIGGQTALKLIRQHG 203 (311)
Q Consensus 187 ipgiG~ktA~~li~~~g 203 (311)
|.|||..+|..++++.|
T Consensus 21 I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 21 IYGVGKTRSKAILAAAG 37 (114)
T ss_dssp STTCCHHHHHHHHHHTT
T ss_pred hcCcCHHHHHHHHHHcC
Confidence 67999999999999876
No 64
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=35.81 E-value=16 Score=31.14 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.9
Q ss_pred CCCccHHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQ 201 (311)
Q Consensus 187 ipgiG~ktA~~li~~ 201 (311)
+||||++||--++..
T Consensus 120 lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 120 LPGVGKYTCAAVMCL 134 (221)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 799999999887764
No 65
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=35.54 E-value=16 Score=31.43 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=13.0
Q ss_pred CCCCccHHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (311)
.+||||++||--++.-
T Consensus 142 ~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 142 AIKGIGQWTAEMFMMF 157 (233)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHHH
Confidence 4799999999887653
No 66
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=35.19 E-value=16 Score=31.12 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=12.6
Q ss_pred CCCccHHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQ 201 (311)
Q Consensus 187 ipgiG~ktA~~li~~ 201 (311)
+||||++||--++.-
T Consensus 114 lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 114 LPGVGRSTAGAILSL 128 (225)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 799999999887753
No 67
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=34.51 E-value=8.3 Score=21.14 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=11.3
Q ss_pred CCCCCcccccCcCCC
Q 021529 285 SSQGRLESFFKPVAN 299 (311)
Q Consensus 285 ~~q~~l~~ff~~~~~ 299 (311)
+...+|++||++..-
T Consensus 7 ~g~~TLesFFK~L~~ 21 (26)
T 2zvk_U 7 EGMQTLESFFKPLTH 21 (26)
T ss_pred cccccHHHHhccCCc
Confidence 445599999998653
No 68
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=34.36 E-value=1.2e+02 Score=28.57 Aligned_cols=45 Identities=9% Similarity=-0.029 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCceEeccCcHHHHHHHHHHc-CceEEEecCCCc
Q 021529 86 HNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS-GQVYAVASEDMD 130 (311)
Q Consensus 86 ~~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~-g~v~~V~S~DsD 130 (311)
-+..+.+-|+++|++.++.-|++.+.+..|+++ |...+++..+.+
T Consensus 93 sL~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 138 (482)
T 2xry_A 93 GLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPL 138 (482)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHcCCCEEEEecccc
Confidence 345666667777777777777777777777664 443333444333
No 69
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=34.35 E-value=86 Score=29.79 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCceEeccCcHHHHHHHHHHc
Q 021529 87 NDDCKRLLKLMGVPVVEAPSEAEAQCAALCKS 118 (311)
Q Consensus 87 ~~~i~~lL~~~gi~~i~apgEADa~iA~L~~~ 118 (311)
+..+.+-|+.+|++.++.-|++.+.+..|+++
T Consensus 67 L~~L~~~L~~~G~~L~v~~g~~~~~l~~l~~~ 98 (489)
T 1np7_A 67 VQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQ 98 (489)
T ss_dssp HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEECCHHHHHHHHHHH
Confidence 34455555556666666556555555555553
No 70
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=32.32 E-value=1.6e+02 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCceEe---ccCcHHHHHHHHHHcCceEEEecCCCcc
Q 021529 87 NDDCKRLLKLMGVPVVE---APSEAEAQCAALCKSGQVYAVASEDMDS 131 (311)
Q Consensus 87 ~~~i~~lL~~~gi~~i~---apgEADa~iA~L~~~g~v~~V~S~DsD~ 131 (311)
++.+.++-+..++.++. ..+|+|+.+-.+|+.--+ .++|+|.-+
T Consensus 62 L~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~-~lvTnD~~L 108 (134)
T 3ix7_A 62 LETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEA-ALVTNDHAL 108 (134)
T ss_dssp HHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTC-EEEESCHHH
T ss_pred HHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCC-EEEeCCHHH
Confidence 34445544444555552 224999999999996444 478887544
No 71
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=32.15 E-value=20 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=12.3
Q ss_pred CCCccHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIR 200 (311)
Q Consensus 187 ipgiG~ktA~~li~ 200 (311)
+||||++||--++.
T Consensus 118 lpGIG~~TA~~il~ 131 (226)
T 1orn_A 118 LPGVGRKTANVVVS 131 (226)
T ss_dssp STTCCHHHHHHHHH
T ss_pred CCCccHHHHHHHHH
Confidence 79999999988775
No 72
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=31.82 E-value=19 Score=30.30 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.5
Q ss_pred CCCccHHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQ 201 (311)
Q Consensus 187 ipgiG~ktA~~li~~ 201 (311)
+||||++||--++..
T Consensus 114 l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 114 LPGVGRKTANVVLNT 128 (211)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 699999998887763
No 73
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=31.29 E-value=38 Score=20.64 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 021529 251 PDEEGLINFLVSENGFNSDRVTKAIEKI 278 (311)
Q Consensus 251 ~d~~~l~~~~~~~~~f~~~~v~~~~~~~ 278 (311)
|+.+.+..+. .+||+.+....+++.-
T Consensus 3 p~e~~i~~L~--~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 3 PKSLAVEELS--GMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHHHH--TTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HcCCCHHHHHHHHHHh
Confidence 5667777775 6899998888888653
No 74
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=30.81 E-value=31 Score=33.97 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCCCCccHHHHHHHHHHcCCHHHHHH
Q 021529 185 DSIRGIGGQTALKLIRQHGSIETILE 210 (311)
Q Consensus 185 d~ipgiG~ktA~~li~~~gsle~i~~ 210 (311)
-|||+||..+|..|.+.|++++.+.+
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~ 540 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEA 540 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHc
Confidence 37899999999999999999998865
No 75
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=30.79 E-value=21 Score=30.55 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.5
Q ss_pred CCCCccHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIR 200 (311)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (311)
.|||||++||--++.
T Consensus 143 ~l~GIG~~TA~~ill 157 (228)
T 3s6i_A 143 QIKGIGRWTVEMLLI 157 (228)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999987764
No 76
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.78 E-value=7.6 Score=31.42 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.6
Q ss_pred CCCccHHHHHHHHHHcC
Q 021529 187 IRGIGGQTALKLIRQHG 203 (311)
Q Consensus 187 ipgiG~ktA~~li~~~g 203 (311)
|.|||..+|..++++.|
T Consensus 33 I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 33 IKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHcC
Confidence 68999999999999976
No 77
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=30.28 E-value=21 Score=31.70 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.5
Q ss_pred CCCCccHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIR 200 (311)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (311)
.+||||++||--++.
T Consensus 215 ~lpGIG~~TA~~ill 229 (290)
T 3i0w_A 215 KFMGVGPQVADCIML 229 (290)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 479999999988765
No 78
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=29.62 E-value=23 Score=30.25 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIR 200 (311)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (311)
.+||||++||--++.
T Consensus 150 ~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLL 164 (225)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 369999999887665
No 79
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=29.03 E-value=24 Score=30.37 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIR 200 (311)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (311)
.+||||++||--++-
T Consensus 154 ~l~GIG~~TA~~ill 168 (232)
T 4b21_A 154 KIKGVKRWTIEMYSI 168 (232)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred hCCCcCHHHHHHHHH
Confidence 379999999887665
No 80
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=28.97 E-value=69 Score=25.75 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCc-----eEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi~-----~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 28 ~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1rvv_A 28 SKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAII 76 (154)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 45677788888888864 788999 8777778888876555554
No 81
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=28.46 E-value=25 Score=25.70 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=13.2
Q ss_pred CCCCCccHHHHHHHHH
Q 021529 185 DSIRGIGGQTALKLIR 200 (311)
Q Consensus 185 d~ipgiG~ktA~~li~ 200 (311)
.-+||||++.+.+|..
T Consensus 21 ~evpGIG~~~~~~L~~ 36 (89)
T 1ci4_A 21 GSLAGIGEVLGKKLEE 36 (89)
T ss_dssp GGSTTCCHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHH
Confidence 3589999998888876
No 82
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=28.40 E-value=50 Score=26.67 Aligned_cols=42 Identities=36% Similarity=0.362 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhC-C-----ceEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMG-V-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~g-i-----~~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..| + .++..|| |-=-.+..|++.|..|+|+
T Consensus 28 ~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 77 (156)
T 3nq4_A 28 DSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVV 77 (156)
T ss_dssp HHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEE
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 556778888888888 4 6788999 8777788888876555444
No 83
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=28.19 E-value=25 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred HHcCCCHH---HHHHHHHHhCCCCCC--------------CCCCccHHHHHHHHHH
Q 021529 163 EELNLTMD---QFIDLCILSGCDYCD--------------SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 163 ~~~gl~~~---q~~d~~~L~G~D~~d--------------~ipgiG~ktA~~li~~ 201 (311)
..+|++.. .+..++.. | |+.. .+||||++||--++..
T Consensus 176 r~~G~~~rKa~~i~~~A~~-g-~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 176 RECGLSRRKAELIVEIAKE-E-NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHTTCCHHHHHHHHHHHTC-S-SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHC-C-CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 45788653 35555544 4 4331 3699999999877653
No 84
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=28.18 E-value=25 Score=31.06 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=12.4
Q ss_pred CCCCccHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIR 200 (311)
Q Consensus 186 ~ipgiG~ktA~~li~ 200 (311)
.+||||++||--++.
T Consensus 211 ~lpGIG~~TA~~ill 225 (282)
T 1mpg_A 211 TFPGIGRWTANYFAL 225 (282)
T ss_dssp TSTTCCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHH
Confidence 479999999987665
No 85
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.83 E-value=1.2e+02 Score=21.07 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCCccHHHHHHHHHHc-CCHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQH-GSIETILENIN 213 (311)
Q Consensus 187 ipgiG~ktA~~li~~~-gsle~i~~~~~ 213 (311)
+|-+|.--..++|..| +++|.++.++=
T Consensus 24 fPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 24 LPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp CCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4778888899999999 48999998873
No 86
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=27.74 E-value=42 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCC-----ceEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi-----~~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 26 ~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 74 (158)
T 1di0_A 26 DEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIV 74 (158)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 5567778888888884 5788999 8777778888877666665
No 87
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=27.54 E-value=50 Score=30.07 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHHHcCCHHHHHHHHHh
Q 021529 187 IRGIGGQTALKLIRQHGSIETILENINR 214 (311)
Q Consensus 187 ipgiG~ktA~~li~~~gsle~i~~~~~~ 214 (311)
||||.+-.|..++++|+|+-.+++++++
T Consensus 260 i~gVS~ekA~aI~~~YPTp~~L~~Ay~~ 287 (341)
T 2ziu_B 260 LNRVSLEMASAVVNAYPSPQLLVQAYQQ 287 (341)
T ss_dssp STTCCHHHHHHHHHHSCSHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7999999999999999999999998875
No 88
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=27.48 E-value=14 Score=19.87 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.5
Q ss_pred cCCCCCcccccCcCCCCC
Q 021529 284 KSSQGRLESFFKPVANTS 301 (311)
Q Consensus 284 ~~~q~~l~~ff~~~~~~~ 301 (311)
+.+...|++||.+....+
T Consensus 2 KsgMKSI~sFF~~k~k~~ 19 (23)
T 3p87_G 2 KSGMKSIDTFFGVKNKKK 19 (26)
T ss_pred CccchhHHHHhccccccc
Confidence 456788999999876544
No 89
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=27.17 E-value=72 Score=25.61 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCC-----ceEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi-----~~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 28 ~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (154)
T 1hqk_A 28 DRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVI 76 (154)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4567778888888886 4788999 8777777888876555554
No 90
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=27.10 E-value=76 Score=25.64 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHH-hCCc-----eEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKL-MGVP-----VVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~-~gi~-----~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+. .|+. ++..|| |-=-.+..|++.|..|+|+
T Consensus 33 ~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 82 (159)
T 1kz1_A 33 EPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVI 82 (159)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 4567778888888 8854 889999 8777778888866544444
No 91
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.67 E-value=71 Score=23.51 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCce--EeccCcHHHHHHHHHHc--CceEEEecCCCccc
Q 021529 84 KQHNDDCKRLLKLMGVPV--VEAPSEAEAQCAALCKS--GQVYAVASEDMDSL 132 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi~~--i~apgEADa~iA~L~~~--g~v~~V~S~DsD~l 132 (311)
.+.+..++++++..|+.+ +.+|.|-.+.+..|.++ ..+++|+-+|+.+-
T Consensus 12 eetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewa 64 (134)
T 2l69_A 12 EETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA 64 (134)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH
T ss_pred HHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH
Confidence 456677888899888775 67788999999999985 33555677888763
No 92
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=25.98 E-value=76 Score=30.97 Aligned_cols=36 Identities=14% Similarity=0.406 Sum_probs=24.6
Q ss_pred HHHHcCC-CHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHH
Q 021529 161 ILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 200 (311)
Q Consensus 161 v~~~~gl-~~~q~~d~~~L~G~D~~d~ipgiG~ktA~~li~ 200 (311)
+.+. |+ +++++... +..| ..-.+||||+|||.+++.
T Consensus 113 i~~~-G~~s~edL~~a-~~~~--~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 113 LWLA-GIDSLERLREA-AESG--ELAGLKGFGAKSAATILE 149 (578)
T ss_dssp HHHT-TCCSHHHHHHH-HHHT--TTTTSTTCCHHHHHHHHH
T ss_pred HHHc-CCCCHHHHHHH-HhhC--ccccCCCCCHHHHHHHHH
Confidence 3444 65 78887753 3334 555689999999999843
No 93
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=25.69 E-value=1.1e+02 Score=29.09 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHc
Q 021529 190 IGGQTALKLIRQH 202 (311)
Q Consensus 190 iG~ktA~~li~~~ 202 (311)
.|...|.+.|..|
T Consensus 202 ~Ge~~A~~~L~~F 214 (471)
T 1dnp_A 202 VEEKAAIAQLRQF 214 (471)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5899999998877
No 94
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=25.63 E-value=1.7e+02 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.7
Q ss_pred ccHHHHHHHHHHc
Q 021529 190 IGGQTALKLIRQH 202 (311)
Q Consensus 190 iG~ktA~~li~~~ 202 (311)
.|...|.+.|..|
T Consensus 245 ~Ge~~A~~~L~~F 257 (543)
T 2wq7_A 245 GGETEALRRMEES 257 (543)
T ss_dssp CSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4888888877665
No 95
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=25.40 E-value=99 Score=29.94 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHh---CCceEeccCcHHHHHHHHHHc-CceEEEecCCCc
Q 021529 85 QHNDDCKRLLKLM---GVPVVEAPSEAEAQCAALCKS-GQVYAVASEDMD 130 (311)
Q Consensus 85 ~~~~~i~~lL~~~---gi~~i~apgEADa~iA~L~~~-g~v~~V~S~DsD 130 (311)
+-+..+.+-|+.+ |++.++.-|++.+++..|+++ |...++...|.+
T Consensus 61 ~sL~~L~~~L~~~~~~G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~ 110 (538)
T 3tvs_A 61 DSLQDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCE 110 (538)
T ss_dssp HHHHHHHHHGGGSCSSSSCCEEEESCHHHHHHHHHHHHCEEEECEECCCC
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCC
Confidence 3455666667777 888877777777777777764 433333333333
No 96
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=25.38 E-value=40 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHHHcC
Q 021529 187 IRGIGGQTALKLIRQHG 203 (311)
Q Consensus 187 ipgiG~ktA~~li~~~g 203 (311)
|.|||..+|..++++.|
T Consensus 35 I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 35 IKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp STTCCHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHcC
Confidence 57999999999999876
No 97
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=25.21 E-value=47 Score=26.85 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCC-----ceEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMGV-----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi-----~~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 27 ~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 75 (157)
T 2obx_A 27 DQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVL 75 (157)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 5567778888888874 5788999 8777778888877666665
No 98
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=25.13 E-value=75 Score=25.59 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCC----ceEeccC--cHHHHHHHHHHcCceEEEe
Q 021529 84 KQHNDDCKRLLKLMGV----PVVEAPS--EAEAQCAALCKSGQVYAVA 125 (311)
Q Consensus 84 ~~~~~~i~~lL~~~gi----~~i~apg--EADa~iA~L~~~g~v~~V~ 125 (311)
..++.-+.+.|+..|+ .++..|| |-=-.+..|++.|..|+|+
T Consensus 29 ~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavI 76 (156)
T 1c2y_A 29 RRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 76 (156)
T ss_dssp HHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEE
Confidence 5567778888888885 5888999 7667777888877555555
No 99
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=24.37 E-value=32 Score=27.81 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.4
Q ss_pred CCCCccHHHHHHHH
Q 021529 186 SIRGIGGQTALKLI 199 (311)
Q Consensus 186 ~ipgiG~ktA~~li 199 (311)
.+||||+.||-.+.
T Consensus 108 ~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 108 ELHGIGKYGNDSYR 121 (161)
T ss_dssp GSTTCCHHHHHHHH
T ss_pred cCCCchHHHHHHHH
Confidence 58999999986654
No 100
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=23.47 E-value=33 Score=30.60 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.6
Q ss_pred CCCccHHHHHHHHHH
Q 021529 187 IRGIGGQTALKLIRQ 201 (311)
Q Consensus 187 ipgiG~ktA~~li~~ 201 (311)
+||||++||--++.-
T Consensus 134 LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 134 LPGVGRYTAGAIASI 148 (287)
T ss_dssp STTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 699999999887763
No 101
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=93 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Q 021529 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (311)
Q Consensus 250 ~~d~~~l~~~~~~~~~f~~~~v~~~~~~ 277 (311)
.++.+.+..++ .+||+.++..++|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (63)
T 2dak_A 7 GPPEDCVTTIV--SMGFSRDQALKALRA 32 (63)
T ss_dssp CCCHHHHHHHH--HHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 57888888886 689999988888865
No 102
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=23.09 E-value=34 Score=31.44 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=13.1
Q ss_pred CCCCccHHHHHHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ 201 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~ 201 (311)
.+||||++||--++..
T Consensus 257 ~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 257 ILPGVGTCVADKICLM 272 (360)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHH
Confidence 4799999999887653
No 103
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.96 E-value=71 Score=19.81 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhhcCCCHHHHHHHHHH
Q 021529 250 APDEEGLINFLVSENGFNSDRVTKAIEK 277 (311)
Q Consensus 250 ~~d~~~l~~~~~~~~~f~~~~v~~~~~~ 277 (311)
.+|.+.+..++ ++||+.++...+|+.
T Consensus 7 ~~~~~~v~~L~--~MGF~~~~a~~AL~~ 32 (47)
T 2ekk_A 7 GVNQQQLQQLM--DMGFTREHAMEALLN 32 (47)
T ss_dssp SSCHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 56888888886 689999888888764
No 104
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=22.38 E-value=2.4e+02 Score=26.84 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhCCceEec
Q 021529 86 HNDDCKRLLKLMGVPVVEA 104 (311)
Q Consensus 86 ~~~~i~~lL~~~gi~~i~a 104 (311)
..+.+.++++..|+..+..
T Consensus 89 ~~~~l~~l~~~~~~~~V~~ 107 (509)
T 1u3d_A 89 SVASLLDVVKSTGASQIFF 107 (509)
T ss_dssp HHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3456777777777777654
No 105
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.69 E-value=68 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.3
Q ss_pred CCCCccHHHHHHHHHH-cCCHHHHH
Q 021529 186 SIRGIGGQTALKLIRQ-HGSIETIL 209 (311)
Q Consensus 186 ~ipgiG~ktA~~li~~-~gsle~i~ 209 (311)
.+|+||++++..|.+- ..|++++.
T Consensus 8 ~LPNiG~~~e~~L~~vGI~s~e~L~ 32 (93)
T 3bqs_A 8 ELPNIGKVLEQDLIKAGIKTPVELK 32 (93)
T ss_dssp GSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred cCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4799999998887652 34766654
No 106
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.83 E-value=2.5e+02 Score=20.45 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHcC-CHHHHHHHHHhhcCCCCCCCchHHHHHHhcCCCCCCccccccCCCCCCCHHHHHHHHHhhcCCCH
Q 021529 190 IGGQTALKLIRQHG-SIETILENINRERYQIPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNS 268 (311)
Q Consensus 190 iG~ktA~~li~~~g-sle~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~~l~~~~~~~~~f~~ 268 (311)
+.+.+-..+++++| ++...+..++ -..|..+..++..++. ++ -..++-.|...+...|.+.+|.++
T Consensus 35 ~S~~~l~r~fk~~G~s~~~~~~~~R-----------l~~A~~lL~~~~~si~-eI-A~~~Gf~~~s~F~r~Fk~~~G~tP 101 (120)
T 3mkl_A 35 MSPSLLKKKLREEETSYSQLLTECR-----------MQRALQLIVIHGFSIK-RV-AVSCGYHSVSYFIYVFRNYYGMTP 101 (120)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHH-----------HHHHHHHHTSTTCCHH-HH-HHHTTCSCHHHHHHHHHHHHSSCH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHHHHcCCCCHH-HH-HHHHCCCCHHHHHHHHHHHHCcCH
Confidence 45555555555554 3333333332 2345566665555432 22 234555688899998888899999
Q ss_pred HHHHHHHH
Q 021529 269 DRVTKAIE 276 (311)
Q Consensus 269 ~~v~~~~~ 276 (311)
..+++...
T Consensus 102 ~~yr~~~~ 109 (120)
T 3mkl_A 102 TEYQERSA 109 (120)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 88876654
No 107
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=20.49 E-value=31 Score=26.91 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHcC
Q 021529 187 IRGIGGQTALKLIRQHG 203 (311)
Q Consensus 187 ipgiG~ktA~~li~~~g 203 (311)
|.|||..+|..++.+.|
T Consensus 22 I~GIG~~~A~~I~~~~g 38 (126)
T 2vqe_M 22 IYGIGKARAKEALEKTG 38 (126)
T ss_dssp SSSCCSHHHHHHTTTTT
T ss_pred cccccHHHHHHHHHHcC
Confidence 68999999999998876
No 108
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=20.16 E-value=45 Score=24.04 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=10.7
Q ss_pred CCCCccHHHHHHHH
Q 021529 186 SIRGIGGQTALKLI 199 (311)
Q Consensus 186 ~ipgiG~ktA~~li 199 (311)
.++|||++.|..|=
T Consensus 62 ~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 62 ILQHFGDRLCRMLD 75 (87)
T ss_dssp TCTTTCHHHHHHHH
T ss_pred HhhcccHHHHHHHH
Confidence 36899999887753
Done!