BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021530
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 177/324 (54%), Gaps = 19/324 (5%)
Query: 1 MDKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDY 60
M KIEHK + V GLN+H+AE G GP ++ F+HGFPE+WYSWRHQMV PD
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTIL-FIHGFPELWYSWRHQMVYLAERGYRAVAPDL 66
Query: 61 RGYG--LSDPPAEPEKASFKDITNDLLATLDHLGIN--KVFLVAKDFGARPAYLFALLHP 116
RGYG P +P K S + D++A L+ + N KVF+VA D+GA A+ L P
Sbjct: 67 RGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRP 126
Query: 117 ERVSGVITLGVPFIPP----GTAEFHKSL-PEGFYISRWQEPGRAEADFGRHDAKTVVRN 171
++V ++ L V F E K++ E YISR+Q PG EA+F AK+V++
Sbjct: 127 DKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLKK 186
Query: 172 IYILFSRSEIPIA-PENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYR 230
IL R P P+ K + + DA L WL+ E+L Y +E++GF A+ YR
Sbjct: 187 --ILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNY-YR 243
Query: 231 SIHEKFSLPE----LTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSE 286
++ + L VKVP I+GE D PG ++YI +G K VP LE + + E
Sbjct: 244 ALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLE 303
Query: 287 G-SHFVQEQSPEEVNQLVLTFLNK 309
G +HFV ++ P E+++ + F+ K
Sbjct: 304 GAAHFVSQERPHEISKHIYDFIQK 327
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 177/324 (54%), Gaps = 19/324 (5%)
Query: 1 MDKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDY 60
M KIEHK + V GLN+H+AE G GP ++ F+HGFPE+WYSWRHQMV PD
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTIL-FIHGFPELWYSWRHQMVYLAERGYRAVAPDL 66
Query: 61 RGYG--LSDPPAEPEKASFKDITNDLLATLDHLGIN--KVFLVAKDFGARPAYLFALLHP 116
RGYG P +P K S + D++A L+ + N KVF+VA D+GA A+ L P
Sbjct: 67 RGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRP 126
Query: 117 ERVSGVITLGVPFIPP----GTAEFHKSL-PEGFYISRWQEPGRAEADFGRHDAKTVVRN 171
++V ++ L V F E K++ E YISR+Q PG EA+F AK+V++
Sbjct: 127 DKVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQVPGEIEAEFAPIGAKSVLKK 186
Query: 172 IYILFSRSEIPIA-PENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYR 230
IL R P P+ K + + DA L WL+ E+L Y +E++GF A+ YR
Sbjct: 187 --ILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNY-YR 243
Query: 231 SIHEKFSLPE----LTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSE 286
++ + L VKVP I+GE D PG ++YI +G K VP LE + + E
Sbjct: 244 ALPINWELTAPWTGAQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLE 303
Query: 287 G-SHFVQEQSPEEVNQLVLTFLNK 309
G +HFV ++ P E+++ + F+ K
Sbjct: 304 GAAHFVSQERPHEISKHIYDFIQK 327
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 28/320 (8%)
Query: 4 IEHKYIKVQ-GLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRG 62
+ H Y+ V+ + LH E G+GP V HGFPE WYSWR+Q+ D +G
Sbjct: 18 MSHGYVTVKPRVRLHFVELGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 76
Query: 63 YGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGV 122
YG S P E E+ + + +++ LD LG+++ + D+G + AL +PERV V
Sbjct: 77 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 136
Query: 123 ITLGVPFIP--PGTA--EFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSR 178
+L PFIP P + E K+ P Y +QEPG AEA+ + + R LF
Sbjct: 137 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 192
Query: 179 SEIPIAPENK--EIMDLVDASTPLPPWL----TAEDLATYGALYEKSGFRTALQVPYRSI 232
S+ + +K E L ++P P L T E++ Y ++KSGFR L YR++
Sbjct: 193 SDESVLSMHKVCEAGGLF-VNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNM 250
Query: 233 HE--KFSLPELTVK--VPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGS 288
K++ L K +PAL++ EKD+ L P + ++ +D++P+L+ + +
Sbjct: 251 ERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCG 304
Query: 289 HFVQEQSPEEVNQLVLTFLN 308
H+ Q P EVNQ+++ +L+
Sbjct: 305 HWTQMDKPTEVNQILIKWLD 324
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 28/320 (8%)
Query: 4 IEHKYIKVQ-GLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRG 62
+ H Y+ V+ + LH E G+GP V HGFPE WYSWR+Q+ D +G
Sbjct: 33 MSHGYVTVKPRVRLHFVELGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 91
Query: 63 YGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGV 122
YG S P E E+ + + +++ LD LG+++ + D+G + AL +PERV V
Sbjct: 92 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 151
Query: 123 ITLGVPFIP--PGTA--EFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSR 178
+L PFIP P + E K+ P Y +QEPG AEA+ + + R LF
Sbjct: 152 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 207
Query: 179 SEIPIAPENK--EIMDLVDASTPLPPWL----TAEDLATYGALYEKSGFRTALQVPYRSI 232
S+ + +K E L ++P P L T E++ Y ++KSGFR L YR++
Sbjct: 208 SDESVLSMHKVCEAGGLF-VNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNM 265
Query: 233 HE--KFSLPELTVK--VPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGS 288
K++ L K +PAL++ EKD+ L P + ++ +D++P+L+ + +
Sbjct: 266 ERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCG 319
Query: 289 HFVQEQSPEEVNQLVLTFLN 308
H+ Q P EVNQ+++ +L+
Sbjct: 320 HWTQMDKPTEVNQILIKWLD 339
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 163/320 (50%), Gaps = 28/320 (8%)
Query: 4 IEHKYIKVQ-GLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRG 62
+ H Y+ V+ + LH E G+GP V HGFPE WYSWR+Q+ D +G
Sbjct: 237 MSHGYVTVKPRVRLHFVELGSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKG 295
Query: 63 YGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGV 122
YG S P E E+ + + +++ LD LG+++ + D+G + AL +PERV V
Sbjct: 296 YGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 355
Query: 123 ITLGVPFIP--PGTA--EFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSR 178
+L PFIP P + E K+ P Y +QEPG AEA+ + + R LF
Sbjct: 356 ASLNTPFIPANPNMSPLESIKANPVFDYQLYFQEPGVAEAEL----EQNLSRTFKSLFRA 411
Query: 179 SEIPIAPENK--EIMDLVDASTPLPPWL----TAEDLATYGALYEKSGFRTALQVPYRSI 232
S+ + +K E L ++P P L T E++ Y ++KSGFR L YR++
Sbjct: 412 SDESVLSMHKVCEAGGLF-VNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNW-YRNM 469
Query: 233 HE--KFSLPELTVK--VPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGS 288
K++ L K +PAL++ EKD+ L P + ++ +D++P+L+ + +
Sbjct: 470 ERNWKWACKSLGRKILIPALMVTAEKDFVL-VPQMSQHM-----EDWIPHLKRGHIEDCG 523
Query: 289 HFVQEQSPEEVNQLVLTFLN 308
H+ Q P EVNQ+++ +L+
Sbjct: 524 HWTQMDKPTEVNQILIKWLD 543
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 164/323 (50%), Gaps = 23/323 (7%)
Query: 2 DKIEHKYIKVQ-GLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDY 60
+ + H Y+ V+ G+ LH E G+GP + HGFPE W+SWR+Q+ D
Sbjct: 233 NDVSHGYVTVKPGIRLHFVEMGSGP-ALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDM 291
Query: 61 RGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVS 120
+GYG S P E E+ + + + +++ LD LGI + + D+ + AL +PERV
Sbjct: 292 KGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVR 351
Query: 121 GVITLGVPFIPP----GTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILF 176
V +L PF+PP + +S+P Y +QEPG AEA+ ++ ++T ++ +
Sbjct: 352 AVASLNTPFMPPDPDVSPMKVIRSIPVFNYQLYFQEPGVAEAELEKNMSRT-FKSFFRAS 410
Query: 177 SRSEIPIAPENKEIMDLVDASTPLPPWL----TAEDLATYGALYEKSGFRTALQVPYRSI 232
+ + EI ++ +TP P L T E++ Y ++K+GFR L YR+
Sbjct: 411 DETGFIAVHKATEIGGIL-VNTPEDPNLSKITTEEEIEFYIQQFKKTGFRGPLNW-YRNT 468
Query: 233 HE--KFSLPELTVK--VPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGS 288
K+S L K VPAL++ EKD L+ P + S ++ ++P L+ + +
Sbjct: 469 ERNWKWSCKGLGRKILVPALMVTAEKDIVLR-PEM-----SKNMEKWIPFLKRGHIEDCG 522
Query: 289 HFVQEQSPEEVNQLVLTFLNKHV 311
H+ Q + P EVNQ+++ +L V
Sbjct: 523 HWTQIEKPTEVNQILIKWLQTEV 545
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 155/354 (43%), Gaps = 57/354 (16%)
Query: 6 HKYIKVQGLNLH-VAET---GTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
H+ + +G +H VA++ GP +VV LHGFPE WYSWRHQ+ D R
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGP-LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQR 69
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
GYG S + K++ D++ LD G + F+V D+GA A+ FA LHP+R +G
Sbjct: 70 GYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAG 129
Query: 122 VITLGVPFIPPGT-----AEFHKSLPEGFYISRWQEPGRA--EADFGRHDA--------- 165
V+ + VPF G + F + P +++ PGR + F D
Sbjct: 130 VVGISVPFAGRGVIGLPGSPFGERRPSDYHLEL-AGPGRVWYQDYFAVQDGIITEIEEDL 188
Query: 166 -------KTVVRNIYILFSRSEIPIAPENKEIMDLVDA--STPL---------------- 200
V ++ + A + E MD +D + PL
Sbjct: 189 RGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPE 248
Query: 201 --PPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVK---VPALLILGEKD 255
P W T DL Y +E+SGF L + ++ L + K PAL I G+ D
Sbjct: 249 TMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYD 308
Query: 256 YFLKFPGIEDYIRSGKVKDFVPNLEIIRL-SEGSHFVQEQSPEEVNQLVLTFLN 308
+ G + R+ +V +PN + ++ H++Q+++PEE N+L+L FL
Sbjct: 309 VGTIW-GAQAIERAHEV---MPNYRGTHMIADVGHWIQQEAPEETNRLLLDFLG 358
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 155/354 (43%), Gaps = 57/354 (16%)
Query: 6 HKYIKVQGLNLH-VAET---GTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
H+ + +G +H VA++ GP +VV LHGFPE WYSWRHQ+ D R
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGP-LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQR 63
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
GYG S + K++ D++ LD G + F+V D+GA A+ FA LHP+R +G
Sbjct: 64 GYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAG 123
Query: 122 VITLGVPFIPPGT-----AEFHKSLPEGFYISRWQEPGRA--EADFGRHDA--------- 165
V+ + VPF G + F + P +++ PGR + F D
Sbjct: 124 VVGISVPFAGRGVIGLPGSPFGERRPSDYHLEL-AGPGRVWYQDYFAVQDGIITEIEEDL 182
Query: 166 -------KTVVRNIYILFSRSEIPIAPENKEIMDLVDA--STPL---------------- 200
V ++ + A + E MD +D + PL
Sbjct: 183 RGWLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPE 242
Query: 201 --PPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVK---VPALLILGEKD 255
P W T DL Y +E+SGF L + ++ L + K PAL I G+ D
Sbjct: 243 TMPAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWHDLADQQGKPLTPPALFIGGQYD 302
Query: 256 YFLKFPGIEDYIRSGKVKDFVPNLEIIRL-SEGSHFVQEQSPEEVNQLVLTFLN 308
+ G + R+ +V +PN + ++ H++Q+++PEE N+L+L FL
Sbjct: 303 VGTIW-GAQAIERAHEV---MPNYRGTHMIADVGHWIQQEAPEETNRLLLDFLG 352
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 41/309 (13%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 V--PFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRH---DAKTVVRNI---YILFSR 178
PF P E+ + E F R AD GR D + Y++
Sbjct: 131 FIRPF--PTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPL 181
Query: 179 SEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSL 238
+E+ + + + VD P W +L G E + ++ +H+
Sbjct: 182 TEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQS--- 232
Query: 239 PELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEE 298
VP LL G + + P E + ++ + +PN + + + G HF+QE +P+
Sbjct: 233 -----PVPKLLFWGTPGFII--PPAE----AARLAESLPNCKTVDIGPGLHFLQEDNPDL 281
Query: 299 VNQLVLTFL 307
+ + +L
Sbjct: 282 IGSEIARWL 290
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 41/309 (13%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR ++ PD G G S
Sbjct: 11 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWR-NIIPHVAPSHRCIAPDLIGMGKS 69
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 70 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
Query: 127 V--PFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRH---DAKTVVRNI---YILFSR 178
PF P E+ + E F R AD GR D + Y++
Sbjct: 128 FIRPF--PTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPL 178
Query: 179 SEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSL 238
+E+ + + + VD P W +L G E + ++ +H+
Sbjct: 179 TEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQS--- 229
Query: 239 PELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEE 298
VP LL G + + P E + ++ + +PN + + + G HF+QE +P+
Sbjct: 230 -----PVPKLLFWGTPGFII--PPAE----AARLAESLPNCKTVDIGPGLHFLQEDNPDL 278
Query: 299 VNQLVLTFL 307
+ + +L
Sbjct: 279 IGSEIARWL 287
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 5 EHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYG 64
E K+I+++G + + GTG + ++F HG P Y WR+ M D G G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTG-DPILFQHGNPTSSYLWRNIMPHCAGLGRLIAC-DLIGMG 67
Query: 65 LSDP--PAEPEK---ASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV 119
SD P+ PE+ A +D + L LD LG ++V LV D+G+ + +A H ERV
Sbjct: 68 DSDKLDPSGPERYAYAEHRDYLDALWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERV 125
Query: 120 SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNI--YILFS 177
G+ + +P A+F + + F R Q A + D V + + IL
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ----AGEELVLQDNVFVEQVLPGLILRP 181
Query: 178 RSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFS 237
SE +A + + +A P W +A A A+ Y +
Sbjct: 182 LSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV------VAIARDYAGWLSESP 235
Query: 238 LPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFV---PNLEIIRLSEGSHFVQEQ 294
+P+L + PG + +G+++DF PN I ++ G+HF+QE
Sbjct: 236 IPKLFINAE--------------PGA---LTTGRMRDFCRTWPNQTEITVA-GAHFIQED 277
Query: 295 SPEEVNQLVLTFLNK 309
SP+E+ + F+ +
Sbjct: 278 SPDEIGAAIAAFVRR 292
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 5 EHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYG 64
E K+I+++G + + GTG + ++F HG P Y WR+ M D G G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTG-DPILFQHGNPTSSYLWRNIMPHCAGLGRLIAC-DLIGMG 67
Query: 65 LSDP--PAEPEK---ASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV 119
SD P+ PE+ A +D + L LD LG ++V LV D+G+ + +A H ERV
Sbjct: 68 DSDKLDPSGPERYAYAEHRDYLDALWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERV 125
Query: 120 SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNI--YILFS 177
G+ + +P A+F + + F R Q A + D V + + IL
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ----AGEELVLQDNVFVEQVLPGLILRP 181
Query: 178 RSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFS 237
SE +A + + +A P W +A A A+ Y +
Sbjct: 182 LSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV------VAIARDYAGWLSESP 235
Query: 238 LPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFV---PNLEIIRLSEGSHFVQEQ 294
+P+L + PG + +G+++DF PN I ++ G+HF+QE
Sbjct: 236 IPKLFINAE--------------PGA---LTTGRMRDFCRTWPNQTEITVA-GAHFIQED 277
Query: 295 SPEEVNQLVLTFLNK 309
SP+E+ + F+ +
Sbjct: 278 SPDEIGAAIAAFVRR 292
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 5 EHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYG 64
E K+I+++G + + GTG + ++F HG P Y WR+ M D G G
Sbjct: 9 EKKFIEIKGRRMAYIDEGTG-DPILFQHGNPTSSYLWRNIMPHCAGLGRLIAC-DLIGMG 66
Query: 65 LSDP--PAEPEK---ASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV 119
SD P+ PE+ A +D + L LD LG ++V LV D+G+ + +A H ERV
Sbjct: 67 DSDKLDPSGPERYAYAEHRDYLDALWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERV 124
Query: 120 SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNI--YILFS 177
G+ + +P A+F + + F R Q A + D V + + IL
Sbjct: 125 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ----AGEELVLQDNVFVEQVLPGLILRP 180
Query: 178 RSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFS 237
SE +A + + +A P W +A A A+ Y +
Sbjct: 181 LSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV------VAIARDYAGWLSESP 234
Query: 238 LPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFV---PNLEIIRLSEGSHFVQEQ 294
+P+L + PG + +G+++DF PN I ++ G+HF+QE
Sbjct: 235 IPKLFINAE--------------PGA---LTTGRMRDFCRTWPNQTEITVA-GAHFIQED 276
Query: 295 SPEEVNQLVLTFLNK 309
SP+E+ + F+ +
Sbjct: 277 SPDEIGAAIAAFVRR 291
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 5 EHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYG 64
E K+I+++G + + GTG + ++F HG P Y WR+ M D G G
Sbjct: 10 EKKFIEIKGRRMAYIDEGTG-DPILFQHGNPTSSYLWRNIMPHCAGLGRLIAC-DLIGMG 67
Query: 65 LSDP--PAEPEK---ASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV 119
SD P+ PE+ A +D + L LD LG ++V LV D+G+ + +A H ERV
Sbjct: 68 DSDKLDPSGPERYAYAEHRDYLDALWEALD-LG-DRVVLVVHDWGSALGFDWARRHRERV 125
Query: 120 SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNI--YILFS 177
G+ + +P A+F + + F R Q A + D V + + IL
Sbjct: 126 QGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ----AGEELVLQDNVFVEQVLPGLILRP 181
Query: 178 RSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFS 237
SE +A + + +A P W +A A A+ Y +
Sbjct: 182 LSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADV------VAIARDYAGWLSESP 235
Query: 238 LPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFV---PNLEIIRLSEGSHFVQEQ 294
+P+L + PG + +G+++DF PN I ++ G+HF+QE
Sbjct: 236 IPKLFINAE--------------PGA---LTTGRMRDFCRTWPNQTEITVA-GAHFIQED 277
Query: 295 SPEEVNQLVLTFLNK 309
SP+E+ + F+ +
Sbjct: 278 SPDEIGAAIAAFVXR 292
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 49/313 (15%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM- 129
Query: 127 VPFIPPGTAEFHKSLPEGFYISRWQEPGRA------EADFGRH---DAKTVVRNI---YI 174
EF + +P W E R AD GR D + + ++
Sbjct: 130 ---------EFIRPIPTW---DEWPEFARELFQAFRTADVGRELIIDQNAFIEQVLPKFV 177
Query: 175 LFSRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHE 234
+ +E+ + + + VD P W +L G E + ++ +H+
Sbjct: 178 VRPLTEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQ 231
Query: 235 KFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQ 294
VP LL G + P E + ++ + +PN + + + G H++QE
Sbjct: 232 S--------PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQED 277
Query: 295 SPEEVNQLVLTFL 307
+P+ + + +L
Sbjct: 278 NPDLIGSEIARWL 290
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 125/313 (39%), Gaps = 49/313 (15%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM- 129
Query: 127 VPFIPPGTAEFHKSLPEGFYISRWQEPGRA------EADFGRH---DAKTVVRNI---YI 174
EF + +P W E R AD GR D + Y+
Sbjct: 130 ---------EFIRPIPTW---DEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPKYV 177
Query: 175 LFSRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHE 234
+ +E+ + + + VD P W +L G E + ++ +H+
Sbjct: 178 VRPLTEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQ 231
Query: 235 KFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQ 294
VP LL G + P E + ++ + +PN + + + G H++QE
Sbjct: 232 S--------PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQED 277
Query: 295 SPEEVNQLVLTFL 307
+P+ + + +L
Sbjct: 278 NPDLIGSEIARWL 290
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 126/309 (40%), Gaps = 41/309 (13%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 V--PFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRH---DAKTVVRNI---YILFSR 178
PF P E+ + E F R AD GR D + Y++
Sbjct: 131 FIRPF--PTWDEWPEFARETFQAFR-------TADVGRELIIDQNAFIEGALPKYVVRPL 181
Query: 179 SEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSL 238
+E+ + + + VD P W +L G E + ++ +H+
Sbjct: 182 TEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQS--- 232
Query: 239 PELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEE 298
VP LL G + P E + ++ + +PN + + + G H++QE +P+
Sbjct: 233 -----PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDL 281
Query: 299 VNQLVLTFL 307
+ + +L
Sbjct: 282 IGSEIARWL 290
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 38/311 (12%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
KY+++ G + + G G + +VF HG P Y WR+ M D G G S
Sbjct: 11 KYLEIAGKRMAYIDEGKG-DAIVFQHGNPTSSYLWRNIMPHLEGLGRLVAC-DLIGMGAS 68
Query: 67 D--PPAEPEKASFKDITNDLLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P+ P++ S+ + + L A D L + + V LV D+G+ + +A H +RV G+
Sbjct: 69 DKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIA 128
Query: 124 TLGVPFIPPGTAEFHKSLPEGF--YISRWQEPGRAEADFGRHDAKTVVRNI--YILFSRS 179
+ P A++ ++ F + S EP E + V R + IL S
Sbjct: 129 FMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNI------FVERVLPGAILRQLS 182
Query: 180 EIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLP 239
+ + + ++ + P W +L G E AL YRS E+ +P
Sbjct: 183 DEEMNHYRRPFVNGGEDRRPTLSW--PRNLPIDGEPAEV----VALVNEYRSWLEETDMP 236
Query: 240 ELTVKV-PALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEE 298
+L + P +I G I DY+RS PN I + G HFVQE SPEE
Sbjct: 237 KLFINAEPGAIITGR---------IRDYVRS------WPNQTEITVP-GVHFVQEDSPEE 280
Query: 299 VNQLVLTFLNK 309
+ + F+ +
Sbjct: 281 IGAAIAQFVRR 291
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 38/311 (12%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
KY+++ G + + G G + +VF HG P Y WR+ M D G G S
Sbjct: 13 KYLEIAGKRMAYIDEGKG-DAIVFQHGNPTSSYLWRNIMPHLEGLGRLVAC-DLIGMGAS 70
Query: 67 D--PPAEPEKASFKDITNDLLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P+ P++ S+ + + L A D L + + V LV D+G+ + +A H +RV G+
Sbjct: 71 DKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIA 130
Query: 124 TLGVPFIPPGTAEFHKSLPEGF--YISRWQEPGRAEADFGRHDAKTVVRNI--YILFSRS 179
+ P A++ ++ F + S EP E + V R + IL S
Sbjct: 131 FMEAIVTPMTWADWPPAVRGVFQGFRSPQGEPMALEHNI------FVERVLPGAILRQLS 184
Query: 180 EIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLP 239
+ + + ++ + P W +L G E AL YRS E+ +P
Sbjct: 185 DEEMNHYRRPFVNGGEDRRPTLSW--PRNLPIDGEPAEV----VALVNEYRSWLEETDMP 238
Query: 240 ELTVKV-PALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEE 298
+L + P +I G I DY+RS PN I + G HFVQE SPEE
Sbjct: 239 KLFINAEPGAIITGR---------IRDYVRS------WPNQTEITVP-GVHFVQEDSPEE 282
Query: 299 VNQLVLTFLNK 309
+ + F+ +
Sbjct: 283 IGAAIAQFVRR 293
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 39/308 (12%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 V--PFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIA 184
PF P E+ + E F R AD GR + +N +I + + +
Sbjct: 131 FIRPF--PTWDEWPEFARETFQAFR-------TADVGRE--LIIDQNAFIEGALPKCVVR 179
Query: 185 PENKEIMD-----LVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLP 239
P + MD + P W +L G E + ++ +H+
Sbjct: 180 PLTEVEMDHYREPFLKPVDREPLWRFPNELPIAG---EPANIVALVEAYMNWLHQS---- 232
Query: 240 ELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEV 299
VP LL G + P E + ++ + +PN + + + G H++QE +P+ +
Sbjct: 233 ----PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNPDLI 282
Query: 300 NQLVLTFL 307
+ +L
Sbjct: 283 GSEIARWL 290
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 127/311 (40%), Gaps = 34/311 (10%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWR-NIIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPFIPPGTAEFHKS--LPEGFYISRWQEPGRA--EADFGRH---DAKTVVRNIY---ILF 176
P EFH + E + +E +A AD GR D + + ++
Sbjct: 131 FIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVR 190
Query: 177 SRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKF 236
+E+ + + + VD P W +L G E + ++ +H+
Sbjct: 191 PLTEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQS- 243
Query: 237 SLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSP 296
VP LL G + P E + ++ + +PN + + + G H++QE +P
Sbjct: 244 -------PVPKLLFWGTPGALI--PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNP 290
Query: 297 EEVNQLVLTFL 307
+ + + +L
Sbjct: 291 DLIGSEIARWL 301
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 127/311 (40%), Gaps = 34/311 (10%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWR-NIIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 127 VPFIPPGTAEFHKS--LPEGFYISRWQEPGRA--EADFGRH---DAKTVVRNIY---ILF 176
P EFH + E + +E +A AD GR D + + ++
Sbjct: 131 FIRPIPTWDEFHHTEVAEEQDHAEAARETFQAFRTADVGRELIIDQNAFIERVLPGGVVR 190
Query: 177 SRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKF 236
+E+ + + + VD P W +L G E + ++ +H+
Sbjct: 191 PLTEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQS- 243
Query: 237 SLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSP 296
VP LL G + P E + ++ + +PN + + + G H++QE +P
Sbjct: 244 -------PVPKLLFWGTPGALI--PPAE----AARLAESLPNCKTVDIGPGLHYLQEDNP 290
Query: 297 EEVNQLVLTFL 307
+ + + +L
Sbjct: 291 DLIGSEIARWL 301
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ +H +++ + +H G GP +++ LHG+P W+ W +++ PD R
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLL-LHGWPGFWWEWS-KVIGPLAEHYDVIVPDLR 64
Query: 62 GYGLSDPP--AEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV 119
G+G S+ P + K S +D A LD LGI K ++V DF A + F + +RV
Sbjct: 65 GFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRV 124
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 49/313 (15%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM- 129
Query: 127 VPFIPPGTAEFHKSLPEGFYISRWQEPGRAE------ADFGRH---DAKTVVRNI---YI 174
EF + +P W E R AD GR D + + +
Sbjct: 130 ---------EFIRPIPTW---DEWPEFARETFQAFRTADVGRELIIDQNAFIEGVLPKCV 177
Query: 175 LFSRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHE 234
+ +E+ + + + VD P W ++ G E + ++ +H+
Sbjct: 178 VRPLTEVEMDHYREPFLKPVDRE---PLWRFPNEIPIAG---EPANIVALVEAYMNWLHQ 231
Query: 235 KFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQ 294
VP LL G + P E + ++ + +PN + + + G H++QE
Sbjct: 232 S--------PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQED 277
Query: 295 SPEEVNQLVLTFL 307
+P+ + + +L
Sbjct: 278 NPDLIGSEIARWL 290
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 49/313 (15%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 11 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 69
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ LG+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 70 DKPDL--DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM- 126
Query: 127 VPFIPPGTAEFHKSLPEGFYISRWQEPGRAE------ADFGRH---DAKTVVRNI---YI 174
EF + +P W E R AD GR D + + +
Sbjct: 127 ---------EFIRPIPT---WDEWPEFARETFQAFRTADVGRELIIDQNAFIEGVLPKCV 174
Query: 175 LFSRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHE 234
+ +E+ + + + VD P W ++ G E + ++ +H+
Sbjct: 175 VRPLTEVEMDHYREPFLKPVDRE---PLWRFPNEIPIAG---EPANIVALVEAYMNWLHQ 228
Query: 235 KFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQ 294
VP LL G + P E + ++ + +PN + + + G H++QE
Sbjct: 229 S--------PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQED 274
Query: 295 SPEEVNQLVLTFL 307
+P+ + + +L
Sbjct: 275 NPDLIGSEIARWL 287
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 49/313 (15%)
Query: 8 YIKVQGLNLHVAETGTGPNV-VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
Y++V G +H + G V+FLHG P Y WR+ ++ PD G G S
Sbjct: 14 YVEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRN-IIPHVAPSHRCIAPDLIGMGKS 72
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D P F D L A ++ +G+ +V LV D+G+ + +A +PERV G+ +
Sbjct: 73 DKPDL--DYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACM- 129
Query: 127 VPFIPPGTAEFHKSLPEGFYISRWQEPGRAE------ADFGRH---DAKTVVRNI---YI 174
EF + +P W E R AD GR D + + +
Sbjct: 130 ---------EFIRPIPTW---DEWPEFARETFQAFRTADVGRELIIDQNAFIEGVLPKCV 177
Query: 175 LFSRSEIPIAPENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHE 234
+ +E+ + + + VD P W +L G E + ++ +H+
Sbjct: 178 VRPLTEVEMDHYREPFLKPVDRE---PLWRFPNELPIAG---EPANIVALVEAYMNWLHQ 231
Query: 235 KFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQ 294
VP LL G + P E + ++ + +PN + + + G H++QE
Sbjct: 232 S--------PVPKLLFWGTPGVLI--PPAE----AARLAESLPNCKTVDIGPGLHYLQED 277
Query: 295 SPEEVNQLVLTFL 307
+P+ + + +L
Sbjct: 278 NPDLIGSEIARWL 290
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 9 IKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYG---- 64
+ L VA G+GP +++ LHG+P+ +W H++ D RGYG
Sbjct: 16 LHTSAARLRVAVKGSGPPLLL-LHGYPQTHLAW-HRIAPRLAEDYSVVLADLRGYGESRA 73
Query: 65 LSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVIT 124
L + A+ KA+ + D L T+ LG + ++ D GAR Y AL HP+ V+ ++
Sbjct: 74 LDEEGADYSKAA---LARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVS 130
Query: 125 LGV 127
L V
Sbjct: 131 LTV 133
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ E + + V + ++ G+GP ++ LHGFP+ + W ++ D R
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGP-ALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLR 60
Query: 62 GYGLSDPP-AEPEKA--SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
GYG S P P+ A SF+ + +D + LG + LV D G R + AL HP+
Sbjct: 61 GYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDS 120
Query: 119 VSGVITLGV 127
V + L +
Sbjct: 121 VLSLAVLDI 129
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 128/319 (40%), Gaps = 49/319 (15%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
+ ++V+G + + G+G V+FLHG P Y WR+ + PD G G S
Sbjct: 12 RTVEVEGATIAYVDEGSG-QPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS 70
Query: 67 DPPAEPE-KASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
A+P+ + +D +D LG++ LV D+G+ A L+P+RV+ V
Sbjct: 71 ---AKPDIEYRLQDHVAYXDGFIDALGLDDXVLVIHDWGSVIGXRHARLNPDRVAAV-AF 126
Query: 126 GVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDA--KTVVRNIYILFSRSEIPI 183
+PP +LP Y + + G D D K V+ + + + I
Sbjct: 127 XEALVPP-------ALPXPSYEAXGPQLGPLFRDLRTADVGEKXVLDGNFFVET-----I 174
Query: 184 APENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRT-ALQVPYR-SIHEKFSLPEL 241
PE + L +A + A Y A + R LQ P I + + E
Sbjct: 175 LPEXGVVRSLSEA-----------EXAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEA 223
Query: 242 TV----------KVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFV 291
V +P LL E P + DY+ + VPNLE+ + G+HF+
Sbjct: 224 EVLKNGEWLXASPIPKLLFHAEPGALAPKP-VVDYL-----SENVPNLEVRFVGAGTHFL 277
Query: 292 QEQSPEEVNQLVLTFLNKH 310
QE P + Q + +L ++
Sbjct: 278 QEDHPHLIGQGIADWLRRN 296
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV--- 127
+ E +F+ N LLA ++ L + + LV +D+G + P R +I +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
Query: 128 --PFIPPGTAEFHKSLPEGF 145
P P + F +GF
Sbjct: 153 TDPVTQPAFSAFVTQPADGF 172
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV--- 127
+ E +F+ N LLA ++ L + + LV +D+G + P R +I +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
Query: 128 --PFIPPGTAEFHKSLPEGF 145
P P + F +GF
Sbjct: 153 TDPVTQPAFSAFVTQPADGF 172
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV--- 127
+ E +F+ N LLA ++ L + + LV +D+G + P R +I +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
Query: 128 --PFIPPGTAEFHKSLPEGF 145
P P + F +GF
Sbjct: 153 TDPVTQPAFSAFVTQPADGF 172
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV--- 127
+ E +F+ N LLA ++ L + + LV +D+G + P R +I +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLM 152
Query: 128 --PFIPPGTAEFHKSLPEGF 145
P P + F +GF
Sbjct: 153 TDPVTQPAFSAFVTQPADGF 172
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ E + + V + ++ G+GP ++ LHGFP+ + W ++ D R
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGP-ALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLR 60
Query: 62 GYGLSDPP-AEPEKA--SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
GYG S P P+ A SF+ + +D + LG + LV G R + AL HP+
Sbjct: 61 GYGGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDS 120
Query: 119 VSGVITLGV 127
V + L +
Sbjct: 121 VLSLAVLDI 129
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 28 VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAE-PEKASFKD--ITNDL 84
++ LHG+P+ W H++ D RGYG S PA P ++ + D
Sbjct: 28 LLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQ 86
Query: 85 LATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV 127
+ + LG + ++V D GAR A+ AL HP RV + L +
Sbjct: 87 VEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFI 130
+ E +F+ N LLA ++ L + + LV +D+G + P R +I + +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLM 152
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 42/318 (13%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ E Y +V G+ LH + G GP +V+ +HGF + WY W HQ++ PD
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGP-LVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVF-LVAKDFGARPAYLFALLHPERVS 120
G G S+PP S + + L ++ F LVA D G Y + + ++
Sbjct: 66 GLGQSEPPK--TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIA 123
Query: 121 GVITLGVPFIPPGTAEFHKSLPEG----FYISRWQEPGRAEADFGRHDAKTVVRNIYILF 176
++ + P F +G +Y S + R A+T++ F
Sbjct: 124 RLVYMEAPIPDARIYRFPAFTAQGESLVWYFSFFAADDRL--------AETLIAGKERFF 175
Query: 177 SRSEIPIAPENKEI-----MDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRS 231
I N E+ +DL S P L A Y AL E S
Sbjct: 176 LEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNA-SFEYYRALNE-------------S 221
Query: 232 IHEKFSLPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFV 291
+ + L + +++P + + G + +E ++K + ++E L H++
Sbjct: 222 VRQNAELAKTRLQMPTMTLAGGGHGGMGTFQLE------QMKAYAEDVEGHVLPGCGHWL 275
Query: 292 QEQSPEEVNQLVLTFLNK 309
E+ +N+LV+ FL++
Sbjct: 276 PEECAAPMNRLVIDFLSR 293
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ E Y +V G+ LH + G GP +V+ +HGF + WY W HQ++ PD
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGP-LVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPP 69
G G S+PP
Sbjct: 66 GLGQSEPP 73
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+ E Y +V G+ LH + G GP +V+ +HGF + WY W HQ++ PD
Sbjct: 8 NGFESAYREVDGVKLHYVKGGQGP-LVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLP 65
Query: 62 GYGLSDPP 69
G G S+PP
Sbjct: 66 GLGQSEPP 73
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 13 GLNLHVAETGT--GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
GL H + G +V + LHG P Y +R + PD+ G+G SD P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGV--- 127
+ E +F+ N LLA ++ L + + LV + +G + P R +I +
Sbjct: 93 DEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLIIMNACLM 152
Query: 128 --PFIPPGTAEFHKSLPEGF 145
P P + F +GF
Sbjct: 153 TDPVTQPAFSAFVTQPADGF 172
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 3 KIEHKYIKVQGLNLHVAETGT-GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+IE + V G ++ ETG VV+FLHG P + WR+ ++ PD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
G+G S P + F D L A ++ G+ +LVA+D+G A+ A P+ V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 VITLGVPFIPPGTAEFHKSLPEG--FYISRWQEPGRAEA 158
+ + P +FH+ E +++ PG EA
Sbjct: 123 LAFMEFIRPMPTWQDFHQDHAEAARAVFRKFRTPGEGEA 161
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 112/302 (37%), Gaps = 44/302 (14%)
Query: 14 LNLHVAETGTGPN-VVVFLHGFPEIWYSWRH--QMVXXXXXXXXXXXPDYRGYGLSDPPA 70
L LH E G G + VV LHG SW + + + D GYG SD A
Sbjct: 44 LKLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRA 103
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFI 130
E + + + L D LG+ +V LV G A FAL +P R ++ +G
Sbjct: 104 EHGQFN-RYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG---- 158
Query: 131 PPGTAEFHKSLPEGFYISRWQ-EPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKE 189
P G I+ + +P + N+ + + +N
Sbjct: 159 -----------PGGLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFL---RVMVYDKNLI 204
Query: 190 IMDLVD---ASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVKVP 246
+LVD A P LTA G + + F + +R ++ ++ P
Sbjct: 205 TPELVDQRFALASTPESLTATR--AMGKSFAGADFEAGMM--WREVYR--------LRQP 252
Query: 247 ALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTF 306
LLI G +D G +++ +P ++ + H+VQ + +E N+L + F
Sbjct: 253 VLLIWGREDRVNPLDGALVALKT------IPRAQLHVFGQCGHWVQVEKFDEFNKLTIEF 306
Query: 307 LN 308
L
Sbjct: 307 LG 308
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 112/302 (37%), Gaps = 44/302 (14%)
Query: 14 LNLHVAETGTGPN-VVVFLHGFPEIWYSWRH--QMVXXXXXXXXXXXPDYRGYGLSDPPA 70
L LH E G G + VV LHG SW + + + D GYG SD A
Sbjct: 24 LKLHYHEAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRA 83
Query: 71 EPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFI 130
E + + + L D LG+ +V LV G A FAL +P R ++ +G
Sbjct: 84 EHGQFN-RYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG---- 138
Query: 131 PPGTAEFHKSLPEGFYISRWQ-EPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKE 189
P G I+ + +P + N+ + + +N
Sbjct: 139 -----------PGGLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFL---RVMVYDKNLI 184
Query: 190 IMDLVD---ASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVKVP 246
+LVD A P LTA G + + F + +R ++ ++ P
Sbjct: 185 TPELVDQRFALASTPESLTATR--AMGKSFAGADFEAGMM--WREVYR--------LRQP 232
Query: 247 ALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTF 306
LLI G +D G +++ +P ++ + H+VQ + +E N+L + F
Sbjct: 233 VLLIWGREDRVNPLDGALVALKT------IPRAQLHVFGQCGHWVQVEKFDEFNKLTIEF 286
Query: 307 LN 308
L
Sbjct: 287 LG 288
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 3 KIEHKYIKVQGLNLHVAETGT-GPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+IE + V G ++ ETG VV+FLHG P + WR+ ++ PD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
G+G S P + F D L A ++ G+ +LVA+D+G A+ A P+ V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 VITLGVPFIPPGTAEFHKS 140
+ + P +FH +
Sbjct: 123 LAFMEFIRPMPTWQDFHHT 141
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 3 KIEHKYIKVQGLNLHVAETGTGPN-VVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
+IE + V G ++ ETG VV+FLHG P + WR+ ++ PD
Sbjct: 6 EIEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLI 64
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
G+G S P + F D L A ++ G+ +LVA+D+G A+ A P+ V G
Sbjct: 65 GFGQSGKPDIAYR--FFDHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRG 122
Query: 122 VITLGVPFIPPGTAEFHKS 140
+ + P +FH +
Sbjct: 123 LAFMEFIRPMPTWQDFHHT 141
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
++I + G GP +++ LHGFP+ W H++ D GYG S
Sbjct: 16 EWINTSSGRIFARVGGDGPPLLL-LHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWS 73
Query: 67 DPPAEPEKA---SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P E+ + + + L+ ++ LG L D GAR +Y AL P R+S +
Sbjct: 74 DMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLA 133
Query: 124 TLGV 127
L +
Sbjct: 134 VLDI 137
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
++I + G GP +++ LHGFP+ W H++ D GYG S
Sbjct: 16 EWINTSSGRIFARVGGDGPPLLL-LHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWS 73
Query: 67 DPPAEPEKA---SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P E+ + + + L+ ++ LG L D GAR +Y AL P R+S +
Sbjct: 74 DMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLA 133
Query: 124 TLGV 127
L +
Sbjct: 134 VLDI 137
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 12 QGLNLHVAETG--TGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPP 69
+GL +H + G + + LHG P + +R + PD G+G SD P
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 70 AEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
+ +F LLA LD L + +V LV +D+G + P+ V +I +
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVM 146
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 8 YIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSD 67
++ G ++ + G+G V+F HG+P W +QM D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGSG-KPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLH-PERVSGVITLG 126
P + +D+ ++HL + +V LV G + H RV+G++ LG
Sbjct: 62 QPWTGN--DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V 127
Sbjct: 120 A 120
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 8 YIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSD 67
++ G ++ + G+G V+F HG+P W +QM D RG+G SD
Sbjct: 3 FVAKDGTQIYFKDWGSG-KPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSD 61
Query: 68 PPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLH-PERVSGVITLG 126
P + +D+ ++HL + +V LV G + H RV+G++ LG
Sbjct: 62 QPWTGN--DYDTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 127 V 127
Sbjct: 120 A 120
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 119/297 (40%), Gaps = 37/297 (12%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPE 73
+ ++ + GTG VV+ +HG+P SW +Q+ D RG+G S P E
Sbjct: 17 IEIYYEDHGTGKPVVL-IHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGY 75
Query: 74 KASFKDITNDLLATLDHLGINKVFLVA-KDFGARPAYLFALLHPERVSGVITLGVPFIPP 132
+ + T+DL L+ L + V LV G A + +R+ V+ G +PP
Sbjct: 76 E--YDTFTSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGA--VPP 131
Query: 133 GTAEFHKSLPEGFYISRWQE-PGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIM 191
Y+ + ++ P A D K+ V N + F +
Sbjct: 132 -------------YLYKSEDHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRT 178
Query: 192 DLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVKVPALLIL 251
DLV S L W A + G L + F + +R EKF+ +P L+I
Sbjct: 179 DLVSESFRLYNWDIAAGASPKGTLDCITAFS---KTDFRKDLEKFN-------IPTLIIH 228
Query: 252 GEKDYFLKFPGIEDYIRSGKVK-DFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFL 307
G+ D + F SGK+ + +PN ++ + G H + +E N+ +L FL
Sbjct: 229 GDSDATVPFE------YSGKLTHEAIPNSKVALIKGGPHGLNATHAKEFNEALLLFL 279
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
++I + G GP +++ LHGFP+ W H++ D GYG S
Sbjct: 16 EWINTSSGRIFARVGGDGPPLLL-LHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWS 73
Query: 67 DPPAEPEKA---SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P E+ + + + L+ ++ LG L + GAR +Y AL P R+S +
Sbjct: 74 DMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLA 133
Query: 124 TLGV 127
L +
Sbjct: 134 VLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS 66
++I + G GP +++ LHGFP+ W H++ D GYG S
Sbjct: 16 EWINTSSGRIFARVGGDGPPLLL-LHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWS 73
Query: 67 DPPAEPEKA---SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
D P E+ + + + L+ ++ LG L GAR +Y AL P R+S +
Sbjct: 74 DMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLA 133
Query: 124 TLGV 127
L +
Sbjct: 134 VLDI 137
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 14 LNLHVAETGTGPNVVVFLHGF---PEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
L +H + G G VV LHG W ++ + D G+G SD
Sbjct: 25 LRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84
Query: 71 EPEKASFKDITNDLL-ATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
S D+ +L + +D L I K+ L+ G + F L PERV ++ +G
Sbjct: 85 --NSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYR 61
D + + + + L+V E G+GP + +F HG + + D R
Sbjct: 46 DHFISRRVDIGRITLNVREKGSGP-LXLFFHGITSNSAVF-EPLXIRLSDRFTTIAVDQR 103
Query: 62 GYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSG 121
G+GLSD P +A+ D +D+ + L LV GAR + A +P+ V
Sbjct: 104 GHGLSDKPETGYEAN--DYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRS 161
Query: 122 VITLG-VPFI 130
V+ + P+I
Sbjct: 162 VVAIDFTPYI 171
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 26 NVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFK--DITND 83
N V+FLHG Y WRH +V PD G G S + S++ D
Sbjct: 44 NAVIFLHGNATSSYLWRH-VVPHIEPVARCIIPDLIGMGKS---GKSGNGSYRLLDHYKY 99
Query: 84 LLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTAEFHKSLP 142
L A + L + K+ V D+GA A+ +A H +R+ ++ + +S+
Sbjct: 100 LTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHM-------------ESVV 146
Query: 143 EGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIMDLVDASTPLPP 202
+ I W E E D I ++ S + EN ++ V S +
Sbjct: 147 D--VIESWDEWPDIEED------------IALIKSEEGEKMVLENNFFVETVLPSKIMRK 192
Query: 203 WLTAEDLATYGALYEKSG--FRTALQVPYRSIHEKFSLPELTVKV-------------PA 247
L E+ A Y +++ G R L P K P++ V P
Sbjct: 193 -LEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPK 251
Query: 248 LLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFL 307
L I + +F + I G K PN E +++ +G HF+QE +P+E+ + + +F+
Sbjct: 252 LFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQEDAPDEMGKYIKSFV 302
Query: 308 NK 309
+
Sbjct: 303 ER 304
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 26 NVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFK--DITND 83
N V+FLHG Y WRH +V PD G G S + S++ D
Sbjct: 45 NAVIFLHGNATSSYLWRH-VVPHIEPVARCIIPDLIGMGKS---GKSGNGSYRLLDHYKY 100
Query: 84 LLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTAEFHKSLP 142
L A + L + K+ V D+GA A+ +A H +R+ ++ + +S+
Sbjct: 101 LTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHM-------------ESVV 147
Query: 143 EGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIMDLVDASTPLPP 202
+ I W E E D I ++ S + EN ++ V S +
Sbjct: 148 D--VIESWDEWPDIEED------------IALIKSEEGEKMVLENNFFVETVLPSKIMRK 193
Query: 203 WLTAEDLATYGALYEKSG--FRTALQVPYRSIHEKFSLPELTVKV-------------PA 247
L E+ A Y +++ G R L P K P++ V P
Sbjct: 194 -LEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPK 252
Query: 248 LLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFL 307
L I + +F + I G K PN E +++ +G HF+QE +P+E+ + + +F+
Sbjct: 253 LFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQEDAPDEMGKYIKSFV 303
Query: 308 NK 309
+
Sbjct: 304 ER 305
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 26 NVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFK--DITND 83
N V+FLHG Y WRH +V PD G G S + S++ D
Sbjct: 44 NAVIFLHGNATSSYLWRH-VVPHIEPVARCIIPDLIGMGKS---GKSGNGSYRLLDHYKY 99
Query: 84 LLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTAEFHKSLP 142
L A + L + K+ V D+GA A+ +A H +R+ ++ + +S+
Sbjct: 100 LTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHM-------------ESVV 146
Query: 143 EGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIMDLVDASTPLPP 202
+ I W E E D I ++ S + EN ++ V S +
Sbjct: 147 D--VIESWDEWPDIEED------------IALIKSEEGEKMVLENNFFVETVLPSKIMRK 192
Query: 203 WLTAEDLATYGALYEKSG--FRTALQVPYRSIHEKFSLPELTVKV-------------PA 247
L E+ A Y +++ G R L P K P++ V P
Sbjct: 193 -LEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLPK 251
Query: 248 LLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFL 307
L I + +F + I G K PN E +++ +G HF+QE +P+E+ + + +F+
Sbjct: 252 LFIESDPGFF------SNAIVEGAKK--FPNTEFVKV-KGLHFLQEDAPDEMGKYIKSFV 302
Query: 308 NK 309
+
Sbjct: 303 ER 304
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 114/307 (37%), Gaps = 41/307 (13%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKA 75
L VA ++ HG +W + D G+ S PA +
Sbjct: 37 LDVAPKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQY- 95
Query: 76 SFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTA 135
SF+ + + A L+ LG+ + ++ G A +ALL+P +V ++ + P
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLV-----LVNPIGL 150
Query: 136 EFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIMDLVD 195
E K+L P R+ D+ R D +T I + A E + D
Sbjct: 151 EDWKALG---------VPWRSVDDWYRRDLQTSAEGIRQY--QQATYYAGEWRPEFDR-- 197
Query: 196 ASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPEL-TVKVPALLILGEK 254
W+ + G E + +AL Y I + + EL ++ P LL++GEK
Sbjct: 198 -------WVQXQAGXYRGKGRESVAWNSAL--TYDXIFTQPVVYELDRLQXPTLLLIGEK 248
Query: 255 DYF----------LKFPGIEDYIRSGK-VKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLV 303
D LK + +Y + GK +P ++ + H Q Q+PE +Q +
Sbjct: 249 DNTAIGKDAAPAELK-ARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQIQAPERFHQAL 307
Query: 304 LTFLNKH 310
L L
Sbjct: 308 LEGLQTQ 314
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 26 NVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFK--DITND 83
N V+FLHG Y WRH +V PD G G S + S++ D
Sbjct: 45 NAVIFLHGNATSSYLWRH-VVPHIEPVARCIIPDLIGMGKS---GKSGNGSYRLLDHYKY 100
Query: 84 LLATLDHLGI-NKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
L A + L + K+ V D+GA A+ +A H +R+ ++ +
Sbjct: 101 LTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHM 143
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D RG G S P A+ + D+ D+ HLG+++ + +G+ A +A HP++
Sbjct: 67 DQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQ 126
Query: 119 VSGVITLGV 127
V+ ++ G+
Sbjct: 127 VTELVLRGI 135
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEI--WYSWRHQMVXXXXXXXXXXXPDYRGYG 64
K I G+ + + G G V++ P + + +WR + PD G+G
Sbjct: 8 KSILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWR-LTIPALSKFYRVIAPDMVGFG 66
Query: 65 LSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVIT 124
+D P E S + ++ +D L I K +V FG A AL + ERV ++
Sbjct: 67 FTDRP-ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVL 125
Query: 125 LG 126
+G
Sbjct: 126 MG 127
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D R +GLS P EP ++ + DL+ TLD L I+K + G + L P+R
Sbjct: 49 DVRNHGLS--PREP-VMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDR 105
Query: 119 VSGVITLGV 127
+ ++ + +
Sbjct: 106 IDKLVAIDI 114
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 7 KYIKVQGLNLHVAETGTGPNVVVFLHGFPEI--WYSWRHQMVXXXXXXXXXXXPDYRGYG 64
K I G+ + + G G V++ P + + +WR + PD G+G
Sbjct: 8 KSILAAGVLTNYHDVGEGQPVILIHGSGPGVSAYANWR-LTIPALSKFYRVIAPDMVGFG 66
Query: 65 LSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVIT 124
+D P E S + ++ +D L I K +V FG A AL + ERV ++
Sbjct: 67 FTDRP-ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVL 125
Query: 125 LGV 127
+G
Sbjct: 126 MGA 128
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP- 72
++L+ + GTG VV +HGFP +SW Q D RG+G S P
Sbjct: 13 IDLYYEDHGTG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY 71
Query: 73 EKASFKDITNDLLATLD 89
+ +F N +L TLD
Sbjct: 72 DYDTFAADLNTVLETLD 88
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP- 72
++L+ + GTG VV +HGFP +SW Q D RG+G S P
Sbjct: 13 IDLYYEDHGTG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY 71
Query: 73 EKASFKDITNDLLATLD 89
+ +F N +L TLD
Sbjct: 72 DYDTFAADLNTVLETLD 88
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP- 72
++L+ + GTG VV+ +HGFP +SW Q D RG+G S P
Sbjct: 14 IDLYYEDHGTGVPVVL-IHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY 72
Query: 73 EKASFKDITNDLLATLD 89
+ +F N +L TLD
Sbjct: 73 DYDTFAADLNTVLETLD 89
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D RG G S P A + + + D+ + G+ + + +G+ A +A HPER
Sbjct: 70 DQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPER 129
Query: 119 VSGVITLGV 127
VS ++ G+
Sbjct: 130 VSEMVLRGI 138
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 69
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDR 128
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 129 IGKLILMG 136
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 23/141 (16%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSWR---------HQMVXXXXXXXXXXXPDY---RGY 63
L+V G+G V+V HGF +W +++V PD+ R Y
Sbjct: 11 LNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRY 70
Query: 64 GLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
DP +DLL LD LGI+ V A L ++ PE S +I
Sbjct: 71 TTLDP-----------YVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLI 119
Query: 124 TLGVPFIPPGTAEFHKSLPEG 144
+G ++H +G
Sbjct: 120 LIGASPRFLNDEDYHGGFEQG 140
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 69
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDR 128
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 129 IGKLILMG 136
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 9 IKVQGLNLHVAETGTGPNVVVFLHG-FPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSD 67
+ V G+ LH +TG G + V+ L G + Q+ D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKAS-FKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
PP A F+ D + + L KV L+ G A + A +P + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V-PFIPPGTAEFHKSLPEGFYISRWQEPGRA--EADFGRHDAKTVVRNIYILFSRSEIPI 183
++ + ++ + + +S+W E R EA +G Y F+R+
Sbjct: 127 ANAYVTDEDSMIYEGIRD---VSKWSERTRKPLEALYG-----------YDYFART---- 168
Query: 184 APENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTV 243
W+ G R +P +I LP V
Sbjct: 169 ----------------CEKWV--------------DGIRQFKHLPDGNICRHL-LPR--V 195
Query: 244 KVPALLILGEKDYFL-KFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQL 302
+ PAL++ GEKD + +F D+I V + + EG H + + +E N+L
Sbjct: 196 QCPALIVHGEKDPLVPRFHA--DFIHK-----HVKGSRLHLMPEGKHNLHLRFADEFNKL 248
Query: 303 VLTFLN 308
FL
Sbjct: 249 AEDFLQ 254
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 69
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDR 128
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 129 IGKLILMG 136
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 9 IKVQGLNLHVAETGTGPNVVVFLHG-FPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSD 67
+ V G+ LH +TG G + V+ L G + Q+ D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKAS-FKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
PP A F+ D + + L KV L+ G A + A +P + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V-PFIPPGTAEFHKSLPEGFYISRWQEPGRA--EADFGRHDAKTVVRNIYILFSRSEIPI 183
++ + ++ + + +S+W E R EA +G Y F+R+
Sbjct: 127 ANAYVTDEDSMIYEGIRD---VSKWSERTRKPLEALYG-----------YDYFART---- 168
Query: 184 APENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTV 243
W+ G R +P +I LP V
Sbjct: 169 ----------------CEKWV--------------DGIRQFKHLPDGNICRHL-LPR--V 195
Query: 244 KVPALLILGEKDYFL-KFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQL 302
+ PAL++ GEKD + +F D+I V + + EG H + + +E N+L
Sbjct: 196 QCPALIVHGEKDPLVPRFHA--DFIHK-----HVKGSRLHLMPEGKHNLHLRFADEFNKL 248
Query: 303 VLTFLN 308
FL
Sbjct: 249 AEDFLQ 254
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 23/141 (16%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSWR---------HQMVXXXXXXXXXXXPDY---RGY 63
L+V G+G V+V HGF +W +++V PD+ R Y
Sbjct: 11 LNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRY 70
Query: 64 GLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVI 123
DP +DLL LD LGI+ V A L ++ PE S +I
Sbjct: 71 TTLDP-----------YVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLI 119
Query: 124 TLGVPFIPPGTAEFHKSLPEG 144
+G ++H +G
Sbjct: 120 LIGASPRFLNDEDYHGGFEQG 140
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 8 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 66
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 67 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDR 125
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 126 IGKLILMG 133
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 69
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDR 128
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 129 IGKLILMG 136
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 7 KYIKVQ-----GLNLHVAETGTGPNVVVFLHGFPEI---WYSWRHQMVXXXXXXXXXXXP 58
K++K+ N+H E G G V++ LHG W ++ +
Sbjct: 11 KFVKINEKGFSDFNIHYNEAGNGETVIM-LHGGGPGAGGWSNYYRNVGPFVDAGYRVILK 69
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D G+ SD E+ + + +D L I++ LV G A FAL +P+R
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVN-ARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDR 128
Query: 119 VSGVITLG 126
+ +I +G
Sbjct: 129 IGKLILMG 136
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP- 72
++L+ + G G VV +HGFP +SW Q D RG+G S P
Sbjct: 13 IDLYYEDHGAG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGY 71
Query: 73 EKASFKDITNDLLATLD 89
+ +F N +L TLD
Sbjct: 72 DYDTFAADLNTVLETLD 88
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D R +GLS P EP ++ + DL+ TLD I+K + G + L P+R
Sbjct: 49 DVRNHGLS--PREP-VMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDR 105
Query: 119 VSGVITLGV 127
+ ++ + +
Sbjct: 106 IDKLVAIDI 114
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 9 IKVQGLNLHVAETGTGPNVVVFLHG-FPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSD 67
+ V G+ LH +TG G + V+ L G + Q+ D RGYG S
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSR 66
Query: 68 PPAEPEKAS-FKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
PP A F+ D + + L KV L+ G A + A +P + ++ G
Sbjct: 67 PPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWG 126
Query: 127 V-PFIPPGTAEFHKSLPEGFYISRWQEPGRA--EADFGRHDAKTVVRNIYILFSRSEIPI 183
++ + ++ + + +S+W E R EA +G Y F+R+
Sbjct: 127 ANAYVTDEDSMIYEGIRD---VSKWSERTRKPLEALYG-----------YDYFART---- 168
Query: 184 APENKEIMDLVDASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTV 243
W+ G R +P +I LP V
Sbjct: 169 ----------------CEKWV--------------DGIRQFKHLPDGNICRHL-LPR--V 195
Query: 244 KVPALLILGEKDYFL-KFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQL 302
+ PAL++ GEKD + +F D+I V + + EG H + + +E N+L
Sbjct: 196 QCPALIVHGEKDPLVPRFHA--DFIHK-----HVKGSRLHLMPEGKHNLHLRFADEFNKL 248
Query: 303 VLTFLN 308
FL
Sbjct: 249 AEDFLQ 254
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 58 PDYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLH-- 115
P++RG+GLS P+E +++ D L LD LG+ V+ G L LL
Sbjct: 62 PNWRGHGLS--PSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGG--WVLVELLEQA 117
Query: 116 -PERV-SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEAD--FGRHDAKTVVRN 171
PER G+I + + P +F KSL RW+E D HD K V +
Sbjct: 118 GPERAPRGIIMDWLMWAP--KPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHH 175
Query: 172 I 172
+
Sbjct: 176 L 176
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 58 PDYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLH-- 115
P++RG+GLS P+E +++ D L LD LG+ V+ G L LL
Sbjct: 59 PNWRGHGLS--PSEVPDFGYQEQVKDALEILDQLGVETFLPVSHSHGG--WVLVELLEQA 114
Query: 116 -PERV-SGVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEAD--FGRHDAKTVVRN 171
PER G+I + + P +F KSL RW+E D HD K V +
Sbjct: 115 GPERAPRGIIMDWLMWAP--KPDFAKSLTLLKDPERWREGTHGLFDVWLDGHDEKRVRHH 172
Query: 172 I 172
+
Sbjct: 173 L 173
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 17/138 (12%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSW---------RHQMVXXXXXXXXXXXPDYRGYGLS 66
L+V GTG ++ HGF +W +++V PDY +
Sbjct: 10 LNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFN-- 67
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
+ +DLL +D LGI V A + ++ PE S +I +G
Sbjct: 68 ------RYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIG 121
Query: 127 VPFIPPGTAEFHKSLPEG 144
++H EG
Sbjct: 122 FSPRFLNDEDYHGGFEEG 139
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 13 GLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP 72
G ++ + G+G +VF HG+P SW QM+ D RG+G S P
Sbjct: 8 GTQIYYKDWGSG-QPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSG 66
Query: 73 EKASFKDITNDLLATLDHLGINKVFL 98
+DL ++HL + L
Sbjct: 67 N--DMDTYADDLAQLIEHLDLRDAVL 90
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSWR---------HQMVXXXXXXXXXXXPDYRGYGLS 66
L+V G+G VVV HGF +W H++V PD+ +
Sbjct: 10 LNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRY 69
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D + +DLLA LD L I + V A L ++ P+ + ++ +G
Sbjct: 70 D--------NLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 121
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 16 LHVAETGTGPNVVVFLHGFPEIWYSWR---------HQMVXXXXXXXXXXXPDYRGYGLS 66
L+V G+G VVV HGF +W H++V PD+ +
Sbjct: 8 LNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRY 67
Query: 67 DPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLG 126
D + +DLLA LD L I + V A L ++ P+ + ++ +G
Sbjct: 68 D--------NLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIG 119
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 36/248 (14%)
Query: 61 RGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVS 120
+G G SD + S + DL A + L INK G A ++A E ++
Sbjct: 58 KGCGNSDSAKNDSEYSXTETIKDLEAIREALYINKWGFAGHSAGGXLALVYATEAQESLT 117
Query: 121 GVITLGVPFIPPGTAEFHKSLPEGFYISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSE 180
+I G ++ + S + Y S+ + R + + + V+ SR
Sbjct: 118 KIIVGGA-----AASKEYASHKDSIYCSKNVKFNRIVSIXNALNDDSTVQEERKALSREW 172
Query: 181 IPIAPENKEIMDLVDASTPLP-PWLTAEDLATYGALYEKSGFRTALQVPYRS--IHEKFS 237
+ ++E ++ + LP T + Y FR QV Y+ + +K
Sbjct: 173 ALXSFYSEEKLE---EALKLPNSGKTVGNRLNY--------FR---QVEYKDYDVRQKLK 218
Query: 238 LPELTVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSH--FVQEQS 295
VK+P+ + G+ D ++ P YI S ++ + +PN + + E +H FV+E
Sbjct: 219 F----VKIPSFIYCGKHD--VQCP----YIFSCEIANLIPNATLTKFEESNHNPFVEE-- 266
Query: 296 PEEVNQLV 303
++ NQ V
Sbjct: 267 IDKFNQFV 274
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 34/236 (14%)
Query: 82 NDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTAEFHKSL 141
++ A LGI + ++ + +G A+ P SG+++L + P +
Sbjct: 114 DEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQP---SGLVSLAICNSPASM----RLW 166
Query: 142 PEGFYISRWQEPGRAEADFGRHDAK-TVVRNIYI-----LFSRSEIPIAPENKEIMDLVD 195
E R Q P A RH+A T+ Y+ + R + P ++ D V
Sbjct: 167 SEAAGDLRAQLPAETRAALDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTPQDFADSVA 226
Query: 196 ASTPLPPWLTAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELTVKVPALLILGEKD 255
P Y + + F + S+ ++ LP++T P L+I GE D
Sbjct: 227 QMEAEP--------TVYHTMNGPNEFHVVGTLGDWSVIDR--LPDVTA--PVLVIAGEHD 274
Query: 256 YFLKFPGIEDYIRSGK-VKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFLNKH 310
E ++ + D +P++ SH + PEE +V FL++H
Sbjct: 275 --------EATPKTWQPFVDHIPDVRSHVFPGTSHCTHLEKPEEFRAVVAQFLHQH 322
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 242 TVKVPALLILGEKDYFLKFPGIEDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQ 301
+ +VP LL+LGE + + + + FVP++E + H + + P VN+
Sbjct: 244 SARVPILLLLGEHEVIY-----DPHSALHRASSFVPDIEAEVIKNAGHVLSXEQPTYVNE 298
Query: 302 LVLTFLN 308
V F N
Sbjct: 299 RVXRFFN 305
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 79 DITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERV--SGVITLGVPFIP 131
D N LL D+LGI K + G F L PERV + +++ F+P
Sbjct: 119 DYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILSPAETFLP 173
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 111/286 (38%), Gaps = 41/286 (14%)
Query: 27 VVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFKDITNDLLA 86
V+VFLHGF ++ H + D G+G D + E +F IT L
Sbjct: 18 VLVFLHGFLSDSRTY-HNHIEKFTDNYHVITIDLPGHG-EDQSSMDETWNFDYITTLLDR 75
Query: 87 TLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPPGTAEFHKSLPEGFY 146
LD + L G R A +A+ +S +I + PG E L
Sbjct: 76 ILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLI---LESTSPGIKEEANQLER--- 129
Query: 147 ISRWQEPGRAEA-DFGRHDAKTVVRNIYILF-SRSEIPIAPENKEIMDLVDASTPLPPWL 204
R + RA+ D + LF S+ E+P+ +++ + S P
Sbjct: 130 --RLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVEIQHQIRQQRLSQS----PHK 183
Query: 205 TAEDLATYGALYEKSGFRTALQVPYRSIHEKFSLPELT-VKVPALLILGEKDYFLKFPGI 263
A+ L YG +G Q+P P L +KVP L++ GE D KF I
Sbjct: 184 MAKALRDYG-----TG-----QMPNL-------WPRLKEIKVPTLILAGEYDE--KFVQI 224
Query: 264 EDYIRSGKVKDFVPNLEIIRLSEGSHFVQEQSPEEVNQLVLTFLNK 309
+ K+ + +PN + +S H + + +E + ++L FL +
Sbjct: 225 -----AKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKE 265
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 94 NKVFLVAKDFGARPAYLFALLHPERVSGVITLGV----------PFIPPGT-AEFHKSLP 142
+K + G A AL HPERV ++T+ P I P A F + L
Sbjct: 74 DKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLS 133
Query: 143 EGFY--ISRWQEPGRAEADFGRHDAKTVVRNIYILFSRSEIPIAPENKEIMDLVDASTPL 200
+ F + R+ + R DA+ + + + L E+ + EI+ VD PL
Sbjct: 134 DDFQRTVERFLALQTMGTETARQDARALKKTVLAL-PMPEVDVLNGGLEILKTVDLRQPL 192
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 17 HVAETGTGPNVVVFLHGFPEIWYSWRH---------QMVXXXXXXXXXXXPDYRGYGLSD 67
+V G+G +V HGF W+H ++V PDY + D
Sbjct: 27 NVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDF---D 83
Query: 68 PPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
+ E SF DL+A L+ L I V A L +L P+ S ++ +
Sbjct: 84 RYSNLEGYSF-----DLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 136
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 27 VVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPEKASFKDITNDLLA 86
V+ F HG+P W Q++ D RG+G S + +D+ A
Sbjct: 24 VIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWDGH--DMDHYADDVAA 81
Query: 87 TLDHLGINKVFLVAKDFGARPAYLFALLHPE 117
+ HLGI V G + HPE
Sbjct: 82 VVAHLGIQGAVHVGHSTGGGEVVRYMARHPE 112
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 17 HVAETGTGPNVVVFLHGFPEIWYSWRH---------QMVXXXXXXXXXXXPDYRGYGLSD 67
+V G+G +V HGF W+H ++V PDY + D
Sbjct: 9 NVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDF---D 65
Query: 68 PPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
+ E SF DL+A L+ L I V A L +L P+ S ++ +
Sbjct: 66 RYSNLEGYSF-----DLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 118
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Query: 2 DKIEHKYIKVQGLNLHVAETGTGPN-VVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDY 60
+ +E K+++ G + + G+ + VV+ +HG E +W+ + PD
Sbjct: 2 NAMEEKFLEFGGNQICLCSWGSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDL 61
Query: 61 RGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVS 120
G+G S S + + L + LV GA A A + P+++
Sbjct: 62 FGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIK 121
Query: 121 GVITLGVPF 129
+I + +P
Sbjct: 122 ELILVELPL 130
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 17 HVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPP--AEPEK 74
+V G+G +V HGF W+H +V D G G ++P
Sbjct: 11 NVKVIGSGEATIVLGHGFGTDQSVWKH-LVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRY 69
Query: 75 ASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITL 125
++ + + DL+A L+ L I V A L +L P+ S ++ +
Sbjct: 70 SNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMI 120
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 28 VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEP-EKASFKDITNDLLA 86
VVF HG+P W +QM+ D RG+G SD P+ + ++ L
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRSDQPSTGHDMDTYAADVAALTE 83
Query: 87 TLDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVPFIPP 132
LD G V + G A A P RV+ + V +PP
Sbjct: 84 ALDLRG--AVHIGHSTGGGEVARYVARAEPGRVAKAVL--VSAVPP 125
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 137 FHKSLPEGFYISRWQEP----GRAEADFGRHDAKTV-VRNIYILFSRSEIPIAPENKEIM 191
F+ LP+G+ IS++++P G E + + K V +R ++I + I +K ++
Sbjct: 84 FYPDLPKGYQISQYEKPLATNGWVELNLPNGEKKKVRIRRLHIEEDAGK-NIHEGDKTLV 142
Query: 192 DLVDASTPLPPWLTAEDLAT 211
DL A TPL +T D+ T
Sbjct: 143 DLNRAGTPLMEIVTEPDIRT 162
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 14 LNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPAEPE 73
+ L+ + G+G VV +HG+P +SW Q D RG+G S
Sbjct: 13 IELYYEDQGSG-QPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKV--NT 69
Query: 74 KASFKDITNDLLATLDHLGINKVFLVAKDFG 104
+ DL L+ L + V LV G
Sbjct: 70 GYDYDTFAADLHTVLETLDLRDVVLVGFSMG 100
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 13/96 (13%)
Query: 11 VQGLNLHVAETGTGPNVVVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLS-DPP 69
V+G L V G G N V G + +R D RG G S + P
Sbjct: 23 VEGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYF------------DQRGSGRSLELP 70
Query: 70 AEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGA 105
+P + + D L + LG+ + L+A FGA
Sbjct: 71 QDPRLFTVDALVEDTLLLAEALGVERFGLLAHGFGA 106
>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
Length = 415
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 15 NLHVAETGTGPNVVVFLHGF----PEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
+LH+ T VV+ G ++W +R + P GY P
Sbjct: 183 HLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV-GYSSKYPLT 241
Query: 71 EPEKASFKDITNDLLAT--LDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVP 128
E + + N+L + +DH ++V L+ FG + L E++ + LG P
Sbjct: 242 EDYSRLHQAVLNELFSIPYVDH---HRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAP 298
Query: 129 F 129
Sbjct: 299 I 299
>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
Length = 435
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 15 NLHVAETGTGPNVVVFLHGF----PEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDPPA 70
+LH+ T VV+ G ++W +R + P GY P
Sbjct: 203 HLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV-GYSSKYPLT 261
Query: 71 EPEKASFKDITNDLLAT--LDHLGINKVFLVAKDFGARPAYLFALLHPERVSGVITLGVP 128
E + + N+L + +DH ++V L+ FG + L E++ + LG P
Sbjct: 262 EDYSRLHQAVLNELFSIPYVDH---HRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAP 318
Query: 129 F 129
Sbjct: 319 I 319
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 28 VVFLHGFPEIWYSWRHQMVXXXXXXXXXXXPDYRGYGLSDP 68
VVF+HG+P +W+ Q+ D RG+G S P
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTP 62
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 59 DYRGYGLSDPPAEPEKASFKDITNDLLATLDHLGINKVFLVAKDFGARPAYLFALLHPER 118
D RG+G S P P + + D+L LD L + + + G AL P+R
Sbjct: 60 DARGHGASSVP--PGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQR 117
Query: 119 VSGVI 123
+ ++
Sbjct: 118 IERLV 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,913,739
Number of Sequences: 62578
Number of extensions: 418447
Number of successful extensions: 1255
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 149
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)