BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021532
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I5I|A Chain A, The C18s Mutant Of Bovine (Gamma-B)-Crystallin
          Length = 174

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 90  PAYNRWLGILANLPVG--VPM-SVTFQKYHLEHHRFQG-VDGIDMDIPSLTETRMVTNV- 144
           P Y +W+G   ++     +P  + TF+    E   F+G +  I  D PSL +   +T V 
Sbjct: 63  PDYQQWMGFNDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVH 122

Query: 145 ---VAKSIWVIFQLLFYAFRPVFLKP 167
              V +  WV++++  Y  R   L+P
Sbjct: 123 SLNVLEGSWVLYEMPSYRGRQYLLRP 148


>pdb|1AMM|A Chain A, 1.2 Angstrom Structure Of Gamma-B Crystallin At 150k
 pdb|1GCS|A Chain A, Structure Of The Bovine Gamma-B Crystallin At 150k
 pdb|4GCR|A Chain A, Structure Of The Bovine Eye Lens Protein Gamma-B
           (Gamma-Ii)- Crystallin At 1.47 Angstroms
          Length = 174

 Score = 31.6 bits (70), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 90  PAYNRWLGILANLPVG--VPM-SVTFQKYHLEHHRFQG-VDGIDMDIPSLTETRMVTNV- 144
           P Y +W+G   ++     +P  + TF+    E   F+G +  I  D PSL +   +T V 
Sbjct: 63  PDYQQWMGFNDSIRSCRLIPQHTGTFRMRIYERDDFRGQMSEITDDCPSLQDRFHLTEVH 122

Query: 145 ---VAKSIWVIFQLLFYAFRPVFLKP 167
              V +  WV++++  Y  R   L+P
Sbjct: 123 SLNVLEGSWVLYEMPSYRGRQYLLRP 148


>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
           The Minimal Rab Binding Domain Of Rabenosyn-5
          Length = 170

 Score = 30.8 bits (68), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 238 NFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLAS 277
           +F+T  V Y NE H F       L + R +AP YY+G A+
Sbjct: 42  SFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81


>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
           From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
          Length = 459

 Score = 28.1 bits (61), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 14/69 (20%)

Query: 167 PKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNP 226
           P P GYWE     IQ  L          K +  L+++  V  G   +   F S+HY   P
Sbjct: 238 PPPAGYWE----KIQAVL----------KKYDVLLVADEVVTGFGRLGTXFGSDHYGIKP 283

Query: 227 DQETYSYYG 235
           D  T +  G
Sbjct: 284 DLITIAXKG 292


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,958,265
Number of Sequences: 62578
Number of extensions: 406905
Number of successful extensions: 907
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 7
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)