Query 021532
Match_columns 311
No_of_seqs 166 out of 1547
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2987 Fatty acid desaturase 100.0 3.6E-60 7.9E-65 402.1 20.2 299 10-308 19-320 (324)
2 PLN02579 sphingolipid delta-4 100.0 9.2E-57 2E-61 410.0 23.3 296 11-306 24-320 (323)
3 cd03508 Delta4-sphingolipid-FA 100.0 8.4E-54 1.8E-58 386.1 23.1 286 18-303 2-289 (289)
4 PLN03198 delta6-acyl-lipid des 100.0 4.2E-31 9.1E-36 255.7 20.6 234 53-290 231-509 (526)
5 cd03511 Rhizopine-oxygenase-li 100.0 1.4E-31 3E-36 243.4 14.6 226 53-285 39-284 (285)
6 PLN03199 delta6-acyl-lipid des 100.0 6.1E-31 1.3E-35 254.0 19.8 234 54-289 156-464 (485)
7 PLN02598 omega-6 fatty acid de 100.0 1.7E-30 3.6E-35 244.8 21.6 248 54-304 120-403 (421)
8 cd03509 DesA_FADS-like Fatty a 100.0 1.2E-30 2.5E-35 236.1 18.4 216 71-293 38-281 (288)
9 cd03514 CrtR_beta-carotene-hyd 100.0 3.3E-31 7.1E-36 229.4 12.6 180 56-274 21-204 (207)
10 COG3239 DesA Fatty acid desatu 100.0 1E-29 2.2E-34 235.4 17.5 228 55-286 60-312 (343)
11 cd03506 Delta6-FADS-like The D 100.0 1.9E-29 4.1E-34 218.5 9.8 188 63-275 4-202 (204)
12 cd03513 CrtW_beta-carotene-ket 100.0 8.9E-29 1.9E-33 215.4 12.9 195 47-265 19-225 (225)
13 PLN02498 omega-3 fatty acid de 100.0 7.9E-28 1.7E-32 225.5 20.0 218 54-275 145-400 (450)
14 PLN02505 omega-6 fatty acid de 100.0 3.1E-27 6.7E-32 220.0 21.0 224 64-290 90-360 (381)
15 cd03510 Rhizobitoxine-FADS-lik 100.0 7.1E-29 1.5E-33 209.2 7.3 151 53-268 15-175 (175)
16 PF00487 FA_desaturase: Fatty 99.9 1.3E-27 2.9E-32 211.2 8.6 216 56-275 3-249 (257)
17 cd03507 Delta12-FADS-like The 99.9 4.6E-26 1E-30 199.4 14.0 79 54-134 28-106 (222)
18 KOG4232 Delta 6-fatty acid des 99.9 2.5E-25 5.4E-30 203.4 14.2 228 59-290 143-414 (430)
19 cd03512 Alkane-hydroxylase Alk 99.9 3.1E-22 6.7E-27 183.3 16.9 222 53-294 66-314 (314)
20 cd01060 Membrane-FADS-like The 99.7 5.2E-17 1.1E-21 128.7 4.3 60 73-133 14-73 (122)
21 COG1398 OLE1 Fatty-acid desatu 99.2 7.9E-11 1.7E-15 102.7 9.0 178 75-261 63-253 (289)
22 PLN02220 delta-9 acyl-lipid de 99.1 1.5E-09 3.2E-14 98.4 13.6 60 72-134 70-131 (299)
23 KOG1600 Fatty acid desaturase 98.8 2.5E-08 5.5E-13 89.1 7.9 79 52-134 62-142 (321)
24 cd03505 Delta9-FADS-like The D 98.7 5.8E-08 1.3E-12 81.5 7.7 59 73-134 18-78 (178)
25 PF08557 Lipid_DES: Sphingolip 63.4 1.1 2.4E-05 27.7 -1.4 22 11-32 16-38 (39)
26 PF13829 DUF4191: Domain of un 46.8 65 0.0014 28.2 6.1 43 29-71 23-67 (224)
27 cd03509 DesA_FADS-like Fatty a 39.6 1.1E+02 0.0025 27.7 7.0 15 113-127 229-243 (288)
28 PLN02601 beta-carotene hydroxy 35.1 1.7E+02 0.0037 26.4 6.9 46 64-121 213-259 (303)
29 PF10520 Kua-UEV1_localn: Kua- 34.4 2.5E+02 0.0055 23.6 7.7 39 77-124 100-138 (178)
30 PLN02434 fatty acid hydroxylas 27.6 2.2E+02 0.0047 25.2 6.4 72 36-127 141-212 (237)
31 COG1398 OLE1 Fatty-acid desatu 27.5 1.4E+02 0.003 27.0 5.2 14 113-126 236-249 (289)
32 PLN02220 delta-9 acyl-lipid de 25.1 4.2E+02 0.009 24.3 8.0 40 77-126 215-256 (299)
33 COG5282 Uncharacterized conser 22.3 62 0.0013 29.6 2.0 38 72-109 168-206 (359)
34 PLN02505 omega-6 fatty acid de 20.6 2.6E+02 0.0057 26.6 6.0 37 65-101 260-296 (381)
No 1
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-60 Score=402.09 Aligned_cols=299 Identities=57% Similarity=1.002 Sum_probs=284.7
Q ss_pred cccccccccccccccc-cccccchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 021532 10 KSSLSTLKLKSFLVLT-LGLFLSIVDLQVTVVVLLQLYTATLLHDAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFS 88 (311)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~ 88 (311)
-++|++..++|||.+| +++.||..+|++.+++++|+.+++++.+.+|-.++..+..+|+++.+.+++..||.+|+..|+
T Consensus 19 HasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~ll~dl~W~~il~~AYf~gg~iNhsl~LAIHeiSHN~aFg 98 (324)
T KOG2987|consen 19 HASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAYLLRDLDWKWILFIAYFFGGFINHSLTLAIHEISHNLAFG 98 (324)
T ss_pred chhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhhchhHHHHHHHhhhhhhcc
Confidence 3578888899999996 889999999999999999999999999999987777789999999999999999999999997
Q ss_pred C--hhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 021532 89 T--PAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLK 166 (311)
Q Consensus 89 ~--~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (311)
+ +-.|+++|.++.+|.|.|++.+++..|++||++.+.++.|.|.++..+..++.+..++.+|..++++++++||++.+
T Consensus 99 ~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~t~~~K~iw~~lQpfFY~fRPl~i~ 178 (324)
T KOG2987|consen 99 TNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFDTAFGKLIWVTLQPFFYAFRPLFIY 178 (324)
T ss_pred cCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhhhhhHHHHHHHHHHHHHhhhhheec
Confidence 6 78999999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccCCcceecccccccCCCccccccccccceeeccccc
Q 021532 167 PKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGY 246 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~~~~~~l~~~~h~~~~~~~~eh~~~~~~~~t~s~~~~l~~l~~n~ny 246 (311)
+|+..++|..+.++++.+.++++.++||.++.|++.+.++++.+||..+|++.|||.+.++|+|.||+|++||+++|.+|
T Consensus 179 pkp~t~me~iN~iiQ~~fd~li~~f~G~ksl~Yll~~s~lg~gLHP~aGHFisEHY~f~k~~ETySYYGplN~~tfNvGY 258 (324)
T KOG2987|consen 179 PKPPTDMEFINTIIQLSFDLLIVYFFGWKSLAYLLASSFLGMGLHPIAGHFISEHYMFKKGQETYSYYGPLNLLTFNVGY 258 (324)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCcccchhhHhhhhhcCCccceeeecceeeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcCHHHHhHHhHhhhhcCCCcccHHHHHHHHHHcCCCCCccccccCCCccc
Q 021532 247 HNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSATK 308 (311)
Q Consensus 247 H~eHHlfP~vP~~~Lp~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
|+|||.||.||+.+||+++++.+|+|+++|..+||.+++.+|++||.+|+++|+||+.+..+
T Consensus 259 H~EHHDFP~Ipg~~Lp~Vr~iApEyYd~lp~~~Sw~~vlydfi~d~~vgpy~RvKRk~~~~~ 320 (324)
T KOG2987|consen 259 HVEHHDFPYIPGSRLPKVREIAPEYYDNLPQHKSWVGVLYDFIMDPTVGPYARVKRKYRKAD 320 (324)
T ss_pred ccccccCCCCCccccHHHHHhhHHHhcCchhhchHHHHHHHHHcCCCcChHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999876543
No 2
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=9.2e-57 Score=409.97 Aligned_cols=296 Identities=74% Similarity=1.270 Sum_probs=266.2
Q ss_pred ccccccccccccccc-cccccchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 021532 11 SSLSTLKLKSFLVLT-LGLFLSIVDLQVTVVVLLQLYTATLLHDAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFST 89 (311)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~ 89 (311)
++|++..+++|+.++ +.+.||..++.+++++++++++++++.+.+|+..+++++++++++.+++++++|||+|+++|++
T Consensus 24 ~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~~~~~l~~~~~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg~~f~~ 103 (323)
T PLN02579 24 ASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQLCTATLLHDAGWPKILLVAYFFGGFLNHNLFLAIHELSHNLAFKT 103 (323)
T ss_pred HHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCC
Confidence 356777778998885 7789999999888888888888888778889887776788888888999998999999999999
Q ss_pred hhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 021532 90 PAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKP 169 (311)
Q Consensus 90 ~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (311)
+++|+++|.+++++.|.|+..+|+..|+.||+++|+++.|||+++..+.+++++..++.+|...+.+++..|+...++++
T Consensus 104 ~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~E~~l~~~~~~~~~~~~~~~~f~~~rp~~~~~~~ 183 (323)
T PLN02579 104 PVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQGEARLVRNTLSKIVWVFLQLFFYALRPLFVNPKP 183 (323)
T ss_pred HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCC
Confidence 99999999998988999997448989999999999999999999988889988888888998788888888888766666
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccCCcceecccccccCCCccccccccccceeecccccccc
Q 021532 170 PGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNE 249 (311)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~~~~~~l~~~~h~~~~~~~~eh~~~~~~~~t~s~~~~l~~l~~n~nyH~e 249 (311)
..+++..++++++++.++++.+.||.+++|++++.+++..+||..++++.|||...+.++|+|+++++||+++|+|||+|
T Consensus 184 ~~~~~~in~~~~~~~~~~l~~~~G~~~llyl~~~~~~~~~lhp~~g~~~~ehy~~~~~~etysyyg~ln~l~~NigYH~e 263 (323)
T PLN02579 184 PGLWEFINLLTQIAFDAALVYFAGWKSLAYLILSTFLGGGLHPMAGHFISEHYVFNPGQETYSYYGPLNLLTWNVGYHNE 263 (323)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcccccccceeeccceeccCCCCceeehhHHHHHhhcccccHh
Confidence 66777788888888887888889999999988899999888998899999999988889999999999999999999999
Q ss_pred cCCCCCCCCcCHHHHhHHhHhhhhcCCCcccHHHHHHHHHHcCCCCCccccccCCCc
Q 021532 250 HHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRKPSA 306 (311)
Q Consensus 250 HHlfP~vP~~~Lp~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
||+||+|||++||+++++.+|+++++|+.+||..++++||+||..++++|+||+.+.
T Consensus 264 HH~fP~IP~~~Lp~l~~~~pe~y~~l~~~~sw~~~~~~fi~~~~~~~~~r~~r~~~~ 320 (323)
T PLN02579 264 HHDFPRIPGSKLHKVKEIAPEYYDNLKSYKSWSQVIYMYIMDPTIGPFSRMKRKPPK 320 (323)
T ss_pred hcCCCCCchhhHHHHHHhCHHHHhCCCCcCcHHHHHHHHHcCCCCCcceeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999865
No 3
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=8.4e-54 Score=386.06 Aligned_cols=286 Identities=58% Similarity=1.081 Sum_probs=252.3
Q ss_pred cccccccc-cccccchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHH
Q 021532 18 LKSFLVLT-LGLFLSIVDLQVTVVVLLQLYTATLLHDAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWL 96 (311)
Q Consensus 18 ~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~ 96 (311)
+||||.+| +.+.||.++++.++++++++.+++++.+.+||..+++++++++..++++++++|||+|+++++++++|+++
T Consensus 2 ~~~~pei~~L~~~~~~~~~~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~ 81 (289)
T cd03508 2 LAKYPEIKKLFGPDPLTKWVVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLF 81 (289)
T ss_pred cccchHHHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHH
Confidence 68999885 78999999999999999999888888888998887778888888889999999999999999999999999
Q ss_pred HHHhcccccccccccccccchhhccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCChHHHH
Q 021532 97 GILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFI 176 (311)
Q Consensus 97 g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
|.+++.+.|.|+.++||..|+.||+++|++++|||++...+.+++++..++..|.....+++..|+...++++..++++.
T Consensus 82 g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~~~l~~~~~g~~~~~~~~~~~~~~rp~~~~~~~~~~~~~~ 161 (289)
T cd03508 82 GIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFEGKLFSTVLGKAIWVTLQPFFYALRPLFVRPKPPTRLEVI 161 (289)
T ss_pred HHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHHHHHHhCchHHHHHHHHHHHHHHhcccccCCCcchhHHHH
Confidence 99999999999984389999999999999989999998888888888888888876666666777665544445566777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccCCcceecccccccC-CCccccccccccceeecccccccccCCCCC
Q 021532 177 NFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHYVFN-PDQETYSYYGPLNFLTWHVGYHNEHHDFPR 255 (311)
Q Consensus 177 ~~~~~~~~~~~l~~~~g~~~l~~~~~~~~l~~~~h~~~~~~~~eh~~~~-~~~~t~s~~~~l~~l~~n~nyH~eHHlfP~ 255 (311)
+.++++++.++++...||.+++|+++..+++..+||..++++.||++.. ..++|+|+++++|++++|+|||.|||++|+
T Consensus 162 n~~~~~~~~~~l~~~~G~~~~lyll~~~~~~~~~~p~~g~~i~Eh~~~~~~~~~t~S~y~~~~~~~~n~~yH~~HH~~p~ 241 (289)
T cd03508 162 NIVVQITFDYLIYYFFGWKSLAYLLLGSFLGGGLHPLAGHFISEHYVFTGKGQETYSYYGPLNLLTFNVGYHNEHHDFPY 241 (289)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcccccccccccccccccCcCCccchHHHHHHhhccChHHHhcCCCC
Confidence 7777777777777888988777877778888778888888999999977 668999988999999999999999999999
Q ss_pred CCCcCHHHHhHHhHhhhhcCCCcccHHHHHHHHHHcCCCCCccccccC
Q 021532 256 IPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDRTVGPFSRMKRK 303 (311)
Q Consensus 256 vP~~~Lp~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
||||+||++++..|+++++.++.+||.+++++|++||.+++++|+||+
T Consensus 242 iP~~~Lp~~~~~~~~~~~~~~~~~~y~~v~~~~~~~~~~~~~~r~~r~ 289 (289)
T cd03508 242 IPGTRLPKLRKIAPEFYDNLPQHTSWPRVLYDFIMDDNVGPYSRVKRK 289 (289)
T ss_pred CCcccHHHHHHHCHHHHhCCCcCCCHHHHHHHHhcCCCCCCcccccCC
Confidence 999999999999999999988889999999999999999999999995
No 4
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.97 E-value=4.2e-31 Score=255.75 Aligned_cols=234 Identities=18% Similarity=0.202 Sum_probs=144.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHH-hcccccccccccccccchhhccCCCCCC----
Q 021532 53 DAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGIL-ANLPVGVPMSVTFQKYHLEHHRFQGVDG---- 127 (311)
Q Consensus 53 ~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l-~~~~~~~~~~~~~~~~H~~HH~~~~~~~---- 127 (311)
...|+ .+++++++|.+..+..+ ++|||+|+++++++++|+++|.+ ...+.|.|+.+ |+..|+.||.+||..|
T Consensus 231 ~~~~~-~ll~a~llgl~~~q~g~-l~HD~~H~s~~~~~~~n~~~g~~~~~~~~G~s~~~-W~~~Hn~HH~~tN~~~~~~~ 307 (526)
T PLN03198 231 KSISA-VLASACMMALCFQQCGW-LSHDFLHNQVFETRWLNEVVGYLIGNAVLGFSTGW-WKEKHNLHHAAPNECDQLYQ 307 (526)
T ss_pred ccHHH-HHHHHHHHHHHHHHHHH-HHHhcccccccCCcHHHHHHHHHHHHhhcCCCHHH-HHHHHHHhccCCCCCCccCC
Confidence 33443 44556777777655555 59999999999999999999986 56778999996 9999999999999987
Q ss_pred -CCCCCCChh-----H--------HHHHH--HHHHHHHHHHHHH---HH--HHhhhcccCCCC-CChH-HHHHHHHHHHH
Q 021532 128 -IDMDIPSLT-----E--------TRMVT--NVVAKSIWVIFQL---LF--YAFRPVFLKPKP-PGYW-EFINFSIQIAL 184 (311)
Q Consensus 128 -~Dpd~~~~~-----~--------~~~~~--~~~~~~~~~~~~~---~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~ 184 (311)
.|||+.... . ..+.+ .+|..++++++.. .+ ...+....++.. ..++ +....++.+++
T Consensus 308 ~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~yQh~~f~~ll~l~~~~~~~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~ 387 (526)
T PLN03198 308 PIDEDIDTLPLIAWSKDILATVENKTFLRILQYQHLFFMALLFFARGSWLFWSWRYTSTAKLAPADRLLEKGTILFHYFW 387 (526)
T ss_pred CCCCCcCccceeEechhhhhcchhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 699996531 1 11111 2455555543211 11 112222111111 1121 33333333332
Q ss_pred HH-HHHHHH-hHHHHHHHH-----HHHHhhhcccCCc---ceecccccccCCCccccc--c--ccccceeeccccccccc
Q 021532 185 DI-TIVYFW-GWKSFAYLI-----LSTFVGGGMHPMA---GHFISEHYVFNPDQETYS--Y--YGPLNFLTWHVGYHNEH 250 (311)
Q Consensus 185 ~~-~l~~~~-g~~~l~~~~-----~~~~l~~~~h~~~---~~~~~eh~~~~~~~~t~s--~--~~~l~~l~~n~nyH~eH 250 (311)
+. +.+.++ +|..+++++ .+.+++..+.++| +. ..++.+|...|..+| + ..+++|+++|+|||+||
T Consensus 388 ~~~l~l~~~~~~~~l~~~~l~~~~~g~~l~~vF~lnH~~~~v-~~~~~dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEH 466 (526)
T PLN03198 388 FIGTACYLLPGWKPLVWMAVTELMCGMLLGFVFVLSHNGMEV-YNKSKEFVNAQIVSTRDIKANIFNDWFTGGLNRQIEH 466 (526)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccCCCC-CCCCcCHHHHHHhcCcCcCCchHHHHhhcCCcccchh
Confidence 22 222222 354443332 2333333332222 11 112223444443222 2 46889999999999999
Q ss_pred CCCCCCCCcCHHHHhHHhHhhhhc--CCC-cccHHHHHHHHHH
Q 021532 251 HDFPRIPGNKLHKVREVAPEYYQG--LAS-YKSWSQVIYMYIM 290 (311)
Q Consensus 251 HlfP~vP~~~Lp~~~~~~~~~~~~--~p~-~~~~~~~~~~~~~ 290 (311)
||||+||+++||+++++++++|+| .|| ..++++++...+.
T Consensus 467 HLFP~iP~~~l~~i~piVk~~C~k~GlpY~~~~~~~a~~~~l~ 509 (526)
T PLN03198 467 HLFPTMPRHNLNKIAPQVEAFCIKHGLVYEDVSIAAGTCKVLK 509 (526)
T ss_pred hcCCCCchhhHHHHhHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999997 488 5788888876554
No 5
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=99.97 E-value=1.4e-31 Score=243.37 Aligned_cols=226 Identities=24% Similarity=0.349 Sum_probs=137.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCC
Q 021532 53 DAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDI 132 (311)
Q Consensus 53 ~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~ 132 (311)
..+|+ .+++++++|.+ +.+++.++|||+|+++++++++|+++|.+++.+.|.|+.. ||..|+.||+++|++++|||.
T Consensus 39 ~~~~~-~~~~~~~~g~~-~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~-~~~~H~~HH~~~~~~~~Dpd~ 115 (285)
T cd03511 39 WGSWW-ALPAFLVYGVL-YAALFARWHECVHGTAFATRWLNDAVGQIAGLMILLPPDF-FRWSHARHHRYTQIPGRDPEL 115 (285)
T ss_pred hhHHH-HHHHHHHHHHH-HHHHHHHHHHhhcccccCCchHHHHHHHHHHHHhcCChHH-HHHHHHHHhcCcCCCCCCCCC
Confidence 34443 33434444444 5577788999999999999999999999988889999996 999999999999999899998
Q ss_pred CChhH---HHHHHHHHHHHHHH-HHHHHHHH-hhhcccCCCC----CChHHH-HHH---HHHHHHHHHHHHHHh-HHHHH
Q 021532 133 PSLTE---TRMVTNVVAKSIWV-IFQLLFYA-FRPVFLKPKP----PGYWEF-INF---SIQIALDITIVYFWG-WKSFA 198 (311)
Q Consensus 133 ~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~l~~~~g-~~~l~ 198 (311)
..... .+++....+...|. .+..++.. ......+.++ +.+.+. ... ++..+..+.+....| +..+.
T Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 195 (285)
T cd03511 116 AVPRPPTLREYLLALSGLPYWWGKLRTVFRHAFGAVSEAEKPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVL 195 (285)
T ss_pred CCCCchHHHHHHHHHhChHHHHHHHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 54221 12222222222211 11111100 0000001111 111111 111 111111112222234 44455
Q ss_pred HHHHHHHhhhcccCCcceecccccccCCC----cccccc--ccccceeecccccccccCCCCCCCCcCHHHHhHHhHhhh
Q 021532 199 YLILSTFVGGGMHPMAGHFISEHYVFNPD----QETYSY--YGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYY 272 (311)
Q Consensus 199 ~~~~~~~l~~~~h~~~~~~~~eh~~~~~~----~~t~s~--~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~~ 272 (311)
++++|.+++..+.. -..+.||.+.++. .++||. .++.+++++|+|||+|||++|+||||+||++++.+++.+
T Consensus 196 ~wllP~l~~~~~~~--~~~~~eH~~~~~~~~~~~~trs~~~~~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~ 273 (285)
T cd03511 196 VWGLPLLLGQPILR--LFLLAEHGGCPEDANDLRNTRTTLTNPPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDL 273 (285)
T ss_pred HHHHHHHHHHHHHH--HHHHhhcCCCCcccchhhhhhhhhhhHHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhC
Confidence 66777766543311 1236788875432 235553 367899999999999999999999999999999999855
Q ss_pred hcCCCcccHHHHH
Q 021532 273 QGLASYKSWSQVI 285 (311)
Q Consensus 273 ~~~p~~~~~~~~~ 285 (311)
++. ..||.+++
T Consensus 274 ~~~--~~~y~~~~ 284 (285)
T cd03511 274 PVP--YPGYIAVY 284 (285)
T ss_pred CCC--CCcHHHHh
Confidence 432 57886654
No 6
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.97 E-value=6.1e-31 Score=254.00 Aligned_cols=234 Identities=18% Similarity=0.234 Sum_probs=142.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHH-hcccccccccccccccchhhccCCCCC------
Q 021532 54 AGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGIL-ANLPVGVPMSVTFQKYHLEHHRFQGVD------ 126 (311)
Q Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l-~~~~~~~~~~~~~~~~H~~HH~~~~~~------ 126 (311)
.++|..+++++++|....+.++ ++||++|+++++++++|+++|.+ +.++.|.|..+ |+..|+.||++||..
T Consensus 156 ~~~~~~~l~aillg~~~~~~g~-l~HDa~H~~~~~~~~~N~~~g~~~g~l~~G~S~~w-W~~~Hn~HH~~tN~~~~~~~~ 233 (485)
T PLN03199 156 DRFAMHIASALLLGLFFQQCGW-LAHDFLHHQVFKKRKHGDLGGIFWGDLMQGFSMQW-WKNKHNGHHAVPNLHCSSADA 233 (485)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhCCchHHHHHHHHHHHhccCCChHH-HHHHHhhhhcCcCcCccccCC
Confidence 4555556667788777666665 69999999999999999999975 46778999996 999999999999973
Q ss_pred -CCCCCCCChh---------HH--------------HHHHHHHHHHHHHHHHHHH-----HHhhhcccC-----C-----
Q 021532 127 -GIDMDIPSLT---------ET--------------RMVTNVVAKSIWVIFQLLF-----YAFRPVFLK-----P----- 167 (311)
Q Consensus 127 -~~Dpd~~~~~---------~~--------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----~----- 167 (311)
+.|||+.... .. +++.++|..++|+++.... .+++..+.+ .
T Consensus 234 ~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~ 313 (485)
T PLN03199 234 QDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFVKFAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALEL 313 (485)
T ss_pred CCCCCCCCCCceeeecHHHhhhHhhhhhhccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 5899986321 00 2334466666665543211 122111110 0
Q ss_pred CCCCh----HHHHHHHHHHHHHHHHHH-H--HhH-HHHHHHHHH-----HHhhhcccCCcc-ee-c--ccccccCCCccc
Q 021532 168 KPPGY----WEFINFSIQIALDITIVY-F--WGW-KSFAYLILS-----TFVGGGMHPMAG-HF-I--SEHYVFNPDQET 230 (311)
Q Consensus 168 ~~~~~----~~~~~~~~~~~~~~~l~~-~--~g~-~~l~~~~~~-----~~l~~~~h~~~~-~~-~--~eh~~~~~~~~t 230 (311)
.++.. .+....++.+++++.+.. + .++ ..+.++++. .+++.++.++|. .- + .++.+|...|..
T Consensus 314 ~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~~~~~~d~~~~Qv~ 393 (485)
T PLN03199 314 EAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYDADARPDFWKLQVT 393 (485)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHheEEEecCCccccccCCCCCccHHHHHHH
Confidence 00111 122223333333222211 1 122 233343332 333333322221 10 1 112223333442
Q ss_pred c--cc-------ccccceeecccccccccCCCCCCCCcCHHHHhHHhHhhhhc--CCC-cccHHHHHHHHH
Q 021532 231 Y--SY-------YGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQG--LAS-YKSWSQVIYMYI 289 (311)
Q Consensus 231 ~--s~-------~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~~~~--~p~-~~~~~~~~~~~~ 289 (311)
+ ++ ..+++|+++++|||+||||||+||+.+||++.++++++|+| .|| ..++.+++...+
T Consensus 394 TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~ 464 (485)
T PLN03199 394 TTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVL 464 (485)
T ss_pred hccCccCCCCCcchHHHHHhccchhhhhhhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHH
Confidence 2 22 23889999999999999999999999999999999999997 488 466777765433
No 7
>PLN02598 omega-6 fatty acid desaturase
Probab=99.97 E-value=1.7e-30 Score=244.80 Aligned_cols=248 Identities=14% Similarity=0.147 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCC
Q 021532 54 AGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIP 133 (311)
Q Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~ 133 (311)
.+|+..+++ +++.|....++++++|||+|+++++++++|+++|.+++.+.+.|+.. ||..|+.||++||..++|||..
T Consensus 120 ~~w~~~~l~-~~~~G~~~~~l~vl~Hec~H~s~~~~~~lN~~vG~~~~~~ll~p~~~-wr~~H~~HH~~tn~~~~D~~~~ 197 (421)
T PLN02598 120 APWYLLPLA-WAWLGTAITGFFVIGHDCGHNSFSKNQLVEDIVGTIAFTPLIYPFEP-WRIKHNTHHAHTNKLVMDTAWQ 197 (421)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHccCcCCCCCCCCcC
Confidence 355554443 45555667888999999999999999999999999888888999996 9999999999999999999886
Q ss_pred ChhHHHHHH-HHHHHHHH-HHHHHHHHHh------hhcccCC--CCCChH--HHHHHHHHH---HHHHHHHHHHhH-HHH
Q 021532 134 SLTETRMVT-NVVAKSIW-VIFQLLFYAF------RPVFLKP--KPPGYW--EFINFSIQI---ALDITIVYFWGW-KSF 197 (311)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~------~~~~~~~--~~~~~~--~~~~~~~~~---~~~~~l~~~~g~-~~l 197 (311)
......+-. +...+.++ .+.++++... ..-+..+ ++..+. ......+.. .+...+....|. ..+
T Consensus 198 p~t~~e~~~~~~~~r~l~~~~~GP~yl~~~~~~~~~~hf~~~~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~ 277 (421)
T PLN02598 198 PFRPHQFDNADPLRKAMMRAGMGPLWWWASIGHWLFWHFDLNKFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFV 277 (421)
T ss_pred CcCHHHHhhcCHHHHHHHHHhHhHHHHHHhhhcceeeccCcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 532211111 11111111 1112221100 0001100 111121 112111111 111111122342 233
Q ss_pred HHHHHHH-----Hhhhc---ccCC--cceecccccccCCCcc--ccc--cccccceeecccccccccCCCCCCCCcCHHH
Q 021532 198 AYLILST-----FVGGG---MHPM--AGHFISEHYVFNPDQE--TYS--YYGPLNFLTWHVGYHNEHHDFPRIPGNKLHK 263 (311)
Q Consensus 198 ~~~~~~~-----~l~~~---~h~~--~~~~~~eh~~~~~~~~--t~s--~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~ 263 (311)
.++++|. +++.+ .|.. .++...+++++.+++. |.+ +..+++++++|+|||++||+||+||+|+||+
T Consensus 278 ~~ylvP~Lv~~~wl~~it~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpe 357 (421)
T PLN02598 278 KWWLMPWLGYHFWMSTFTMVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRK 357 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHH
Confidence 3333332 22221 1221 1222233333333332 222 2347799999999999999999999999999
Q ss_pred HhHHhHhhhhcCCCcccH-HHHHHHHH----H-cCCCCCccccccCC
Q 021532 264 VREVAPEYYQGLASYKSW-SQVIYMYI----M-DRTVGPFSRMKRKP 304 (311)
Q Consensus 264 ~~~~~~~~~~~~p~~~~~-~~~~~~~~----~-~~~~~~~~~~~~~~ 304 (311)
+++.+|+...+.-..+++ ++.+++.. . |++.+ +...++..
T Consensus 358 a~~alk~~~g~~y~~~~~~~~~l~~~~~~C~~~d~~~~-~~~f~~~~ 403 (421)
T PLN02598 358 AHASLQENWGKHLNKATFNWRLMKTILTQCHVYDKEKN-YVPFDNLA 403 (421)
T ss_pred HHHHHHHHhccccccCchhHHHHHHHhhheEEEcCCCC-eeeccccC
Confidence 999999977753112222 34444332 2 77777 77776644
No 8
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.2e-30 Score=236.10 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=130.7
Q ss_pred HHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCC--CCCCCCCCCChhHHHHHH------
Q 021532 71 NHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQG--VDGIDMDIPSLTETRMVT------ 142 (311)
Q Consensus 71 ~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~--~~~~Dpd~~~~~~~~~~~------ 142 (311)
....+.++|||+|++++|++++|+++|.+. .....|+.. ||..|+.||+++| ++++|||........+.+
T Consensus 38 ~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~-wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~~~~~~~r 115 (288)
T cd03509 38 AALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTR-YRDTHLAHHRDEDLTDPGDDPESNYLSPEQWARLPRWQR 115 (288)
T ss_pred HHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHH-HHHHHHHHcCCCCCCCCCCCCccceecHHHHhhCcHHHH
Confidence 344467899999999999999999999864 334578886 9999999999998 556899986532111111
Q ss_pred -------HHHHHHHHHHHHHHH---HHhhhcccCCCCCChHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHhhh
Q 021532 143 -------NVVAKSIWVIFQLLF---YAFRPVFLKPKPPGYWEFINFSIQI----ALDITIVYFWGWKSFAYLILSTFVGG 208 (311)
Q Consensus 143 -------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~g~~~l~~~~~~~~l~~ 208 (311)
+..+... +++.. ...+..+..-++..+.....++..+ +..+.+....|+..+.|++.+++++.
T Consensus 116 ~~~~~~~~~~~~~l---~gp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~la~ 192 (288)
T cd03509 116 ALLRANNTLLGRLI---LGPPLGLIAFARDEFRALRAGDRAALRAWLLHAALLAPLLAWLQLSAGIPWWAYLLAVYYPAL 192 (288)
T ss_pred HHHHHhhcchhHHh---hhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111 11111 0111111110111111111122111 11112222224555555544556655
Q ss_pred cccCCcceeccccccc-CCCcccc--ccccccceeecccccccccCCCCCCCCcCHHHHhHHhHhhhhcC--CC-cccHH
Q 021532 209 GMHPMAGHFISEHYVF-NPDQETY--SYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGL--AS-YKSWS 282 (311)
Q Consensus 209 ~~h~~~~~~~~eh~~~-~~~~~t~--s~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~~~~~--p~-~~~~~ 282 (311)
.... -+.+.||.+. +..+.|. ...+++||+++|+|||+|||++|+||||+||++++.+++.+.+. .| .+||.
T Consensus 193 ~~~~--~~~~~Eh~~~~~~~~rs~~~~~~~~~~~l~~ninyH~~HH~~P~vP~y~Lp~~h~~~~~~~~~~~~~~~~~~y~ 270 (288)
T cd03509 193 SLAK--IRTFLEHRAHERPRGRTVINEAGGPLRLLFLNNNLHVVHHDLPTLPWYDLPRLYRARRDAYLRRNGGFVYRGYG 270 (288)
T ss_pred HHHh--hchHhhccCCCCccCCceeeeCcHHHHHHHhcCCchHhhcCCCCCCcccHHHHHHHhHHHHhhcCCCccCCCHH
Confidence 4321 1346777653 2222222 12457899999999999999999999999999999999977753 33 69999
Q ss_pred HHHHHHHHcCC
Q 021532 283 QVIYMYIMDRT 293 (311)
Q Consensus 283 ~~~~~~~~~~~ 293 (311)
|+++++..++.
T Consensus 271 ~~~~~~~~~~~ 281 (288)
T cd03509 271 ELFRRHAWRAK 281 (288)
T ss_pred HHHHHHhcccc
Confidence 99999887554
No 9
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=99.97 E-value=3.3e-31 Score=229.36 Aligned_cols=180 Identities=21% Similarity=0.314 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCCh
Q 021532 56 WLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSL 135 (311)
Q Consensus 56 w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~ 135 (311)
|+...+ ++++++.....++.++|||+|++++++|++|+++|.+++.+.+.|+.. ||..|+.||+++|++|+|||..
T Consensus 21 ~~~~~~-~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~-w~~~H~~HH~~~~~~~~DpD~~-- 96 (207)
T cd03514 21 YLPLWV-CFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPV-FRRVHMQHHAHTNDPEKDPDHF-- 96 (207)
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHH-HHHHHHHHhcCcCcCCcCccHH--
Confidence 433334 345556667788888999999999999999999999888888999996 9999999999999999999974
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccCCcc
Q 021532 136 TETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMHPMAG 215 (311)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~~~~~~l~~~~h~~~~ 215 (311)
... + + ....+....+.++++...++..++++++|..++..+... -
T Consensus 97 ----~~~-------~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~l~~~~~l~~-~ 141 (207)
T cd03514 97 ----LLE-------W----------------------L-VARSLFITLLVIAILFGFLWELLNLWFLPALIVGTYLAL-F 141 (207)
T ss_pred ----HHH-------H----------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 000 0 0 000000011111112122344455555555544322000 0
Q ss_pred eecccccccCCC---ccccccc-cccceeecccccccccCCCCCCCCcCHHHHhHHhHhhhhc
Q 021532 216 HFISEHYVFNPD---QETYSYY-GPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQG 274 (311)
Q Consensus 216 ~~~~eh~~~~~~---~~t~s~~-~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~~~~ 274 (311)
..+.||.+.+++ ..+++.. ++.+|+++|+|||.|||+||+||+|+||++++.+|+..++
T Consensus 142 ~~~~~H~~~~~~~~~~~~~~~~~~l~~~l~~~~nyH~~HHL~P~IP~y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 142 FDWLPHHPFEETQRWDNSRVYPSKLLNPLIMGQNYHLVHHLWPSIPWYRYPEAYYANKPLLDA 204 (207)
T ss_pred heeeCccCCCCccchhhhhcccchhHheeecCCchhHHHhCCCCCchhhhHHHHHHhHHHHhh
Confidence 123466543322 2344433 4679999999999999999999999999999999887664
No 10
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=99.97 E-value=1e-29 Score=235.43 Aligned_cols=228 Identities=19% Similarity=0.258 Sum_probs=127.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCC
Q 021532 55 GWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPS 134 (311)
Q Consensus 55 ~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~ 134 (311)
+|+.. ..++++++++..++++++|||+||+++|++++|+++|.+.+.+.+.|+.. ||..|++||++||++|+|||...
T Consensus 60 ~w~~~-~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~-wR~~H~~HH~~t~~~~~d~~~~~ 137 (343)
T COG3239 60 SWWLL-PLALLLAGLLLTGLFSVGHDCGHGSFFKNRWINDLIGHLAAALLLAPPVF-WRISHNQHHAHTNILDDDPETYV 137 (343)
T ss_pred hHHHH-HHHHHHHHHHHHHHHhhhhhccccchhhhhhHHHHHHHHHHHHHhcChhh-hhhhHHHhhcccCCCCCCHHHHH
Confidence 35544 44577788777888999999999999999999999999988888888885 99999999999999987866532
Q ss_pred h-hHHHH--HHHHHH-HHHHHHHHH--H--HHHh---hhcccCCCCCChHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHH
Q 021532 135 L-TETRM--VTNVVA-KSIWVIFQL--L--FYAF---RPVFLKPKPPGYWEFINFS-IQIALDITIVYFWGWKSFAYLIL 202 (311)
Q Consensus 135 ~-~~~~~--~~~~~~-~~~~~~~~~--~--~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~~~l~~~~~ 202 (311)
. .+... .-..+. +..|..+.. . .... +..+.+..+..+....... ..+...+......+|....+++.
T Consensus 138 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~p~l~~ 217 (343)
T COG3239 138 SYPEQLRRGPLRFQLIRLPWLAFGFGPRWALLHFELLEKLFKRSGKAPKAAALATLLAAIGLAALLALAFFWGLIPLLLV 217 (343)
T ss_pred hCchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 1 11111 001111 111111110 0 0011 1111111111111111111 11111111222222321112221
Q ss_pred HH--HhhhcccCCcceecccccc-----cCCC-ccccc---cccccceeecccccccccCCCCCCCCcCHHHHhHHhHhh
Q 021532 203 ST--FVGGGMHPMAGHFISEHYV-----FNPD-QETYS---YYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEY 271 (311)
Q Consensus 203 ~~--~l~~~~h~~~~~~~~eh~~-----~~~~-~~t~s---~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~ 271 (311)
+. ....+.|.... ...|.+ +... .++++ ..++++|+++|+|||+|||+||+||||+||++++.+|+.
T Consensus 218 ~~~~~~~~~~~h~~~--~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~ 295 (343)
T COG3239 218 GLWLVLVLFVHHTFD--LLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEA 295 (343)
T ss_pred HHHHHHHHHhhcccc--cccccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHH
Confidence 22 11222211111 111111 1111 22232 235899999999999999999999999999999999998
Q ss_pred hhcC--CCcccHHHHHH
Q 021532 272 YQGL--ASYKSWSQVIY 286 (311)
Q Consensus 272 ~~~~--p~~~~~~~~~~ 286 (311)
+.+. .+.++|.+...
T Consensus 296 ~~~~~~~~~~~y~~~~~ 312 (343)
T COG3239 296 LGERGLTIYTGYREFKL 312 (343)
T ss_pred cCcCCchhhhhhhhhhh
Confidence 8854 23567776654
No 11
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=99.96 E-value=1.9e-29 Score=218.46 Aligned_cols=188 Identities=19% Similarity=0.170 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCChhHHHHHH
Q 021532 63 AYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLTETRMVT 142 (311)
Q Consensus 63 ~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~ 142 (311)
++++|.+.. .+..++|||+|+++++++++|+++|.+.+.+.|.|+.+ |+..|+.||++||++++|||...........
T Consensus 4 ai~~g~~~~-~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~-w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~ 81 (204)
T cd03506 4 AILLGLFWA-QGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGW-WKNKHNVHHAYTNILGHDPDIDTLPLLARSE 81 (204)
T ss_pred HHHHHHHHH-HHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHH-HHHHHhhhcCcCCCCCCCCCCCcCceEEecc
Confidence 455555544 55566999999999999999999999888888999996 9999999999999999999986521100000
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCChHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhhcccCCc---ceec
Q 021532 143 NVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFW-GWKSFAYLILSTFVGGGMHPMA---GHFI 218 (311)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~l~~~~~~~~l~~~~h~~~---~~~~ 218 (311)
+....+ +..++... .+..++..++.+. ....+..++.+.+++..+..++ +...
T Consensus 82 -------------------~~~~~~-~~~~~~~~---~q~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~ 138 (204)
T cd03506 82 -------------------PAFGKD-QKKRFLHR---YQHFYFFPLLALLLLAFLVVQLAGGLWLAVVFQLNHFGMPVED 138 (204)
T ss_pred -------------------cccccc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhheEeecccccccccC
Confidence 000000 00111111 0111111111110 0000111112222322221111 1111
Q ss_pred ---ccccccCCCccccc----cccccceeecccccccccCCCCCCCCcCHHHHhHHhHhhhhcC
Q 021532 219 ---SEHYVFNPDQETYS----YYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGL 275 (311)
Q Consensus 219 ---~eh~~~~~~~~t~s----~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~~~~~ 275 (311)
.++.+|...|..+| ..++++|+++|+|||+|||+||+||+++||++++++|+.|+|.
T Consensus 139 ~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~~~~~v~~~~~~~ 202 (204)
T cd03506 139 PPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKVAPLVRELCKKH 202 (204)
T ss_pred CCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHHHHHHHHHHHHHh
Confidence 12223333343222 2468999999999999999999999999999999999999974
No 12
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.96 E-value=8.9e-29 Score=215.36 Aligned_cols=195 Identities=21% Similarity=0.258 Sum_probs=121.3
Q ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CChhHHHHHHHHh-cccccccccccccccchhhccCCC
Q 021532 47 TATLLHDAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAF-STPAYNRWLGILA-NLPVGVPMSVTFQKYHLEHHRFQG 124 (311)
Q Consensus 47 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~-~~~~~N~~~g~l~-~~~~~~~~~~~~~~~H~~HH~~~~ 124 (311)
..+...+.+|+..+++++++++.+..++++++|||+|++++ +++++|+++|.++ .+..|.|+.. |+..|++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~-~~~~H~~HH~~~~ 97 (225)
T cd03513 19 ALFFPRGSISLLLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDR-LLRKHHLHHRHPG 97 (225)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHH-HHHHHHHHcCCCC
Confidence 33444455566666666777888889999999999999999 7999999999976 5667999996 9999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCChHHHHHHHHHHHHHHHHHHHH--hH-HHHHHHH
Q 021532 125 VDGIDMDIPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFW--GW-KSFAYLI 201 (311)
Q Consensus 125 ~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~-~~l~~~~ 201 (311)
++ +|||.......++++.+ ..++. +. .++... ..+.+++. ++...+ +. ..+.+++
T Consensus 98 ~~-~DpD~~~~~~~~~~~wy-----~~f~~------~y--------~~~~ql-i~l~ivw~-~~l~~~~~~~~~~~~~~~ 155 (225)
T cd03513 98 TA-KDPDFHKGNPSGFLPWY-----LHFMS------NY--------FGWRQL-AILAAVWL-LLLGLGSAPLANLLLFWA 155 (225)
T ss_pred CC-CCCCCCCCCCCChHHHH-----HHHHH------hH--------hHHHHH-HHHHHHHH-HHHHHHcccHHHHHHHHH
Confidence 99 99998753221221101 00100 00 011111 11111111 111122 22 3455566
Q ss_pred HHHHhhhcc----cCCcceecccccccCCCcccccc--cccccee-ecccccccccCCCCCCCCcCHHHHh
Q 021532 202 LSTFVGGGM----HPMAGHFISEHYVFNPDQETYSY--YGPLNFL-TWHVGYHNEHHDFPRIPGNKLHKVR 265 (311)
Q Consensus 202 ~~~~l~~~~----h~~~~~~~~eh~~~~~~~~t~s~--~~~l~~l-~~n~nyH~eHHlfP~vP~~~Lp~~~ 265 (311)
+|..++.++ ..+.++...| ..+++.++++|+ +++++++ |.|+|||+|||+||++|||+||+++
T Consensus 156 ~P~l~~~~~l~~f~T~lpH~~~~-~~~~~~~~a~~~~~~~~~~~l~c~~fgyH~eHH~fP~~Pw~~Lp~~~ 225 (225)
T cd03513 156 LPLILSSLQLFYFGTWLPHRPGR-GGFADRHRARSSRLSPVLSFLTCYHFGYHHEHHLSPSTPWWRLPELR 225 (225)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCC-CCCCCcccceecCccHHHHHHHHHhcCcchhhccCCCCCcccCcccC
Confidence 666654432 1111221111 122333455653 4678886 4899999999999999999999873
No 13
>PLN02498 omega-3 fatty acid desaturase
Probab=99.96 E-value=7.9e-28 Score=225.50 Aligned_cols=218 Identities=19% Similarity=0.224 Sum_probs=132.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCC
Q 021532 54 AGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIP 133 (311)
Q Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~ 133 (311)
.+|++..+. +++.|..+.++++++|||+|+++++++++|+++|.+++.+.+.|+.. ||..|+.||++||+.++||+..
T Consensus 145 ~~w~~wpl~-w~~~G~~~~gL~vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~-Wr~sH~~HH~~Tn~~e~D~~~~ 222 (450)
T PLN02498 145 NNWVVWPLY-WFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHG-WRISHRTHHQNHGHVENDESWH 222 (450)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHhcCCHHH-HHHHHHHHhcCCCCCCCCCCCC
Confidence 456555554 44455667889999999999999999999999999888888999995 9999999999999999999975
Q ss_pred ChhHHH---------HHHHH-----HHHHHHHHHHHHH---HHhh---hcccCCCCCCh--HHHHHHHHHHHHHHHHHHH
Q 021532 134 SLTETR---------MVTNV-----VAKSIWVIFQLLF---YAFR---PVFLKPKPPGY--WEFINFSIQIALDITIVYF 191 (311)
Q Consensus 134 ~~~~~~---------~~~~~-----~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 191 (311)
...+.. .++.. .++.+|...+..- ..+. +.+.+ +++.. .....+++.+++.+.+...
T Consensus 223 P~t~~~y~~l~~~~~~~~~~~~~~~~g~p~YL~~~~~g~~~sHF~p~s~lF~~-~er~~V~~S~~~~~~~~~~l~~l~~~ 301 (450)
T PLN02498 223 PLSEKIYKSLDKVTRTLRFTLPFPMLAYPFYLWSRSPGKKGSHFHPDSDLFVP-KERKDVITSTACWTAMAALLVCLSFV 301 (450)
T ss_pred cchHHHHHhccccchHHHHHHHHHHHHHHHHHhhhccCCcCcccCCCcccCCh-hhhhheeeehHHHHHHHHHHHHHHHH
Confidence 422211 11100 0111111000000 0000 01111 11111 1111122222222222333
Q ss_pred HhHH-HHHHHHHH-----HHhhhc--c-cCC----cceecccccccCCCcc---ccccccccceeecccccccccCCCCC
Q 021532 192 WGWK-SFAYLILS-----TFVGGG--M-HPM----AGHFISEHYVFNPDQE---TYSYYGPLNFLTWHVGYHNEHHDFPR 255 (311)
Q Consensus 192 ~g~~-~l~~~~~~-----~~l~~~--~-h~~----~~~~~~eh~~~~~~~~---t~s~~~~l~~l~~n~nyH~eHHlfP~ 255 (311)
.|+. .+.++++| .++..+ + |.. .+++..+++++.+++. +|+ ++++|++++||++|+.||+||+
T Consensus 302 ~G~~~~l~~Y~vP~lv~~~WL~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~-yg~i~~l~H~I~tHV~HHlf~~ 380 (450)
T PLN02498 302 MGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRD-YGWINNIHHDIGTHVIHHLFPQ 380 (450)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCc-ccchhhhhcCcccchhhhccCC
Confidence 4532 23333333 333322 1 321 1344566666666654 333 5899999999999999999999
Q ss_pred CCCcCHHHHhHHhHhhhhcC
Q 021532 256 IPGNKLHKVREVAPEYYQGL 275 (311)
Q Consensus 256 vP~~~Lp~~~~~~~~~~~~~ 275 (311)
||+|+|+++++.+|+.+.+.
T Consensus 381 IPhYhl~eAt~aiK~~lg~y 400 (450)
T PLN02498 381 IPHYHLVEATEAAKPVLGKY 400 (450)
T ss_pred CCCcCHHHHHHHHHHHhHHh
Confidence 99999999999998876654
No 14
>PLN02505 omega-6 fatty acid desaturase
Probab=99.95 E-value=3.1e-27 Score=220.03 Aligned_cols=224 Identities=14% Similarity=0.158 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCChh-H-H---
Q 021532 64 YFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLT-E-T--- 138 (311)
Q Consensus 64 ~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~-~-~--- 138 (311)
+++.|..+.++++++|||+|+++++++++|+++|.+++.+.+.|+.. ||..|+.||++||+.++||+..... + .
T Consensus 90 ~~~~G~~~~~l~vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~-Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~ 168 (381)
T PLN02505 90 WAAQGCVLTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFS-WKYSHRRHHSNTGSLERDEVFVPKKKSALPWY 168 (381)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhccCCCCCCccccCcCHHHHhHH
Confidence 34445557888999999999999999999999999877788999996 9999999999999999999864321 1 1
Q ss_pred -HHHHHHHHHHHHHH----HH-HHHHH--h--hh--c----ccCC----CCCChHHH--HHHHHHHHHHHHHH---HHHh
Q 021532 139 -RMVTNVVAKSIWVI----FQ-LLFYA--F--RP--V----FLKP----KPPGYWEF--INFSIQIALDITIV---YFWG 193 (311)
Q Consensus 139 -~~~~~~~~~~~~~~----~~-~~~~~--~--~~--~----~~~~----~~~~~~~~--~~~~~~~~~~~~l~---~~~g 193 (311)
++.+....+....+ ++ +++.. . ++ . +... +++.+..+ ++.+ .++++++++ ...|
T Consensus 169 ~~~~~~p~~~~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~-i~~~~~~l~~~~~~~G 247 (381)
T PLN02505 169 SKYLNNPPGRLLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAG-ILAVSFGLYRLAAAKG 247 (381)
T ss_pred HHHhcChHHHHHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 11111111111111 11 11110 0 00 0 1100 01112221 2221 122222222 2235
Q ss_pred HHH-HHHHHHHHHhhhc--------ccCCc--ceecccccccCCCcc-c--cccccccceeecccc-cccccCCCCCCCC
Q 021532 194 WKS-FAYLILSTFVGGG--------MHPMA--GHFISEHYVFNPDQE-T--YSYYGPLNFLTWHVG-YHNEHHDFPRIPG 258 (311)
Q Consensus 194 ~~~-l~~~~~~~~l~~~--------~h~~~--~~~~~eh~~~~~~~~-t--~s~~~~l~~l~~n~n-yH~eHHlfP~vP~ 258 (311)
+.. +.++++|.++... +|+.. +++..+++++.+++. | ++ +++++++++||+ +|+.||++|+||+
T Consensus 248 ~~~~l~~y~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~tvdr~-yg~~~~l~h~I~~~Hv~HHl~srIP~ 326 (381)
T PLN02505 248 LAWVLCVYGVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALATVDRD-YGILNKVFHNITDTHVAHHLFSTMPH 326 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccceeccCc-chHHHHHHccCCcccchhhccCCCCC
Confidence 433 3344444433321 23222 334456666666653 3 44 489999999997 9999999999999
Q ss_pred cCHHHHhHHhHhhhhcCCC--cccHHHHHHHHHH
Q 021532 259 NKLHKVREVAPEYYQGLAS--YKSWSQVIYMYIM 290 (311)
Q Consensus 259 ~~Lp~~~~~~~~~~~~~p~--~~~~~~~~~~~~~ 290 (311)
|+|+++++.+|+.+.+.-. ....++++++..+
T Consensus 327 Y~l~eA~~aik~~lg~~y~~~~~~~~~~l~~~~~ 360 (381)
T PLN02505 327 YHAMEATKAIKPILGEYYQFDGTPVYKALWREAK 360 (381)
T ss_pred CCHHHHHHHHHHHhHHHhcCCCCcHHHHHHHHhc
Confidence 9999999999987776422 1334555555444
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.95 E-value=7.1e-29 Score=209.20 Aligned_cols=151 Identities=26% Similarity=0.433 Sum_probs=106.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHH-HhcccccccccccccccchhhccCCCCCCCCCC
Q 021532 53 DAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGI-LANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMD 131 (311)
Q Consensus 53 ~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~-l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd 131 (311)
..+|+..+++++++|.. +.++++++|||+|++++|++++|+++|. +++.+.+.|+.. ||..|+.||+++|++ +|||
T Consensus 15 ~~~~~~~~l~~~~~g~~-~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~-~r~~H~~HH~~~~~~-~Dpd 91 (175)
T cd03510 15 WPNWLAYLLAVLLIGAR-QRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAA-YRRSHLKHHRHLGTE-DDPD 91 (175)
T ss_pred hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHH-HHHHHHHHhCccCCC-CCCc
Confidence 45777777766666655 6788888999999999999999999997 567888999996 999999999999995 8999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 021532 132 IPSLTETRMVTNVVAKSIWVIFQLLFYAFRPVFLKPKPPGYWEFINFSIQIALDITIVYFWGWKSFAYLILSTFVGGGMH 211 (311)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~~~~~~l~~~~h 211 (311)
.. ..+.+|++|.++...+-
T Consensus 92 ~~-------------------------------------------------------------~~~~~W~~P~~~~~~~~ 110 (175)
T cd03510 92 LA-------------------------------------------------------------LYLLLWLVPLLTVFPLI 110 (175)
T ss_pred HH-------------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 63 00011112222211100
Q ss_pred CCcceecccccccCCC-----ccccccc-c-ccceee--cccccccccCCCCCCCCcCHHHHhHHh
Q 021532 212 PMAGHFISEHYVFNPD-----QETYSYY-G-PLNFLT--WHVGYHNEHHDFPRIPGNKLHKVREVA 268 (311)
Q Consensus 212 ~~~~~~~~eh~~~~~~-----~~t~s~~-~-~l~~l~--~n~nyH~eHHlfP~vP~~~Lp~~~~~~ 268 (311)
..-+.+.||.+.++. ++|||.. + +.++++ .|+|||.|||++|+||+++||++++.+
T Consensus 111 -~~~~~~~eH~~~~~~~~~~~~~tr~~~~~~~~r~l~~p~~~~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 111 -GRIREIAEHAGVPADEDPDARNTRTTFGGWIERLLFAPHNINYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred -HHHHHHHhccCCCCCCcchhhcCccccccHHHHHHHcccCCcHHHHHhCCcCCchhhHHHHHHhC
Confidence 000124677664432 4566542 3 445665 599999999999999999999998753
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.94 E-value=1.3e-27 Score=211.25 Aligned_cols=216 Identities=24% Similarity=0.295 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCCh
Q 021532 56 WLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSL 135 (311)
Q Consensus 56 w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~ 135 (311)
|+..++ ++++.+.....+..++||++|+++++++++|+++|.+++.+.+.|+.. ||..|+.||+++|++++|||....
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~-wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 3 WWWWLL-ALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSS-WRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhH-hheeeeccccccCCccccCccchh
Confidence 444333 444555556677778999999999999999999999888888999985 999999999999999889998764
Q ss_pred h--HH---HHHHHHHHHHHHHHHHHHH---HHh---hhcccCCCCCC-hH-HHHHHHHHHHHH---HHHHHHHhHHHHHH
Q 021532 136 T--ET---RMVTNVVAKSIWVIFQLLF---YAF---RPVFLKPKPPG-YW-EFINFSIQIALD---ITIVYFWGWKSFAY 199 (311)
Q Consensus 136 ~--~~---~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~-~~-~~~~~~~~~~~~---~~l~~~~g~~~l~~ 199 (311)
. .. +..........+.+..... ... +....+.++.. +. .....+...++. +.+....++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (257)
T PF00487_consen 81 RLPPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRRMRRRRKRPRRYLILAALLLALLLALLAALFFFSPWWALLL 160 (257)
T ss_pred hhhhhhhhhhhhhhhhccccccccccccchhhhhhccccccccccccchhHHHHHHHhhhhhhhhhhhhcccccccchhH
Confidence 1 00 0000001111111111110 000 00000000111 00 011111111111 11111112233333
Q ss_pred HHHHHHhhhcccCCcceecccccccC---C--------Cccccc----cccccceeecccccccccCCCCCCCCcCHHHH
Q 021532 200 LILSTFVGGGMHPMAGHFISEHYVFN---P--------DQETYS----YYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKV 264 (311)
Q Consensus 200 ~~~~~~l~~~~h~~~~~~~~eh~~~~---~--------~~~t~s----~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~ 264 (311)
++++..++..... .....||.+.+ . .+...| ...+++++++|+|||+|||+||++|+++||++
T Consensus 161 ~~~~~~~~~~~~~--~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~vp~~~l~~~ 238 (257)
T PF00487_consen 161 FLLPFLIGSFFLA--FVTYLEHYGLDPDDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGVPWYNLPEA 238 (257)
T ss_pred HHHHHhHHHHHHH--HhhHHhhhcccccccccccceecccccccccccCchhhhccccCCCChHHhCCCCCcCHHHHHHH
Confidence 3333333222100 01134454421 1 111111 24688999999999999999999999999999
Q ss_pred hHHhHhhhhcC
Q 021532 265 REVAPEYYQGL 275 (311)
Q Consensus 265 ~~~~~~~~~~~ 275 (311)
++.+++.|++.
T Consensus 239 ~~~~~~~~~~~ 249 (257)
T PF00487_consen 239 HPILKEVCPEY 249 (257)
T ss_pred HHHHHHHHHHc
Confidence 99999999863
No 17
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=99.94 E-value=4.6e-26 Score=199.36 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=67.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCC
Q 021532 54 AGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIP 133 (311)
Q Consensus 54 ~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~ 133 (311)
.+|+..++. .++.++...++++++|||+|+++++++++|+++|.+++.+.+.|+.. ||..|+.||+++|++++|||..
T Consensus 28 ~~~~~~~~~-~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p~~~-w~~~H~~HH~~~~~~~~D~~~~ 105 (222)
T cd03507 28 LSWWLWPLY-WIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVPYHS-WRISHNRHHAHTGNLEGDEVWV 105 (222)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCChHH-HHHHHHHHHhccCCCCCCCccc
Confidence 466655554 44455557888999999999999999999999999888888999996 9999999999999998999985
Q ss_pred C
Q 021532 134 S 134 (311)
Q Consensus 134 ~ 134 (311)
.
T Consensus 106 p 106 (222)
T cd03507 106 P 106 (222)
T ss_pred C
Confidence 4
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.93 E-value=2.5e-25 Score=203.45 Aligned_cols=228 Identities=17% Similarity=0.178 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHH-HhcccccccccccccccchhhccCCCCCCCCCCCCChh-
Q 021532 59 ILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGI-LANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLT- 136 (311)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~-l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~- 136 (311)
.+++++++|...++..++ +||.+|.+.+|+++||+++.. +++.+.|+|..| |+..|++||+++|..++|||+...+
T Consensus 143 ~l~~a~Ll~~a~~Qs~~l-~Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~W-W~~~H~~HHa~pN~~~~DpDi~~~P~ 220 (430)
T KOG4232|consen 143 SLISAVLLGLAWAQSGWL-QHDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAW-WKSHHNQHHAAPNSLDKDPDIDFEPA 220 (430)
T ss_pred HHHHHHHHHHHHHHHHHH-hcccccccccccccHHHHHHHHHhhhcccccHHH-HHHHHhhhhccCccCCCCccccccch
Confidence 445667778777788876 999999999999999999997 788899999996 9999999999999999999987632
Q ss_pred ---------HHHHHH------HHHHHHHH----HHHHHHH------HHhhh--cccCCCC-CChHHHHHHHHHHHHHHH-
Q 021532 137 ---------ETRMVT------NVVAKSIW----VIFQLLF------YAFRP--VFLKPKP-PGYWEFINFSIQIALDIT- 187 (311)
Q Consensus 137 ---------~~~~~~------~~~~~~~~----~~~~~~~------~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~- 187 (311)
+.+..+ ..+..++. +++.... ..... .+..... .+.++...+.........
T Consensus 221 fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p~l~~~~~~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~~~ 300 (430)
T KOG4232|consen 221 FLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPPFLRLMWFQQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGLLL 300 (430)
T ss_pred hhhCCCchhhhcccceeEeecccceEEEEeccchHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhhHH
Confidence 000000 01111111 1111110 00000 0000000 111122222222221111
Q ss_pred HHHHHhHHH-HHHHHHHHHhhhcccCCc--ceec-ccc--cccCCCccccc----cccccceeecccccccccCCCCCCC
Q 021532 188 IVYFWGWKS-FAYLILSTFVGGGMHPMA--GHFI-SEH--YVFNPDQETYS----YYGPLNFLTWHVGYHNEHHDFPRIP 257 (311)
Q Consensus 188 l~~~~g~~~-l~~~~~~~~l~~~~h~~~--~~~~-~eh--~~~~~~~~t~s----~~~~l~~l~~n~nyH~eHHlfP~vP 257 (311)
+..+.+|.. +.+...+.++...+ ++ +... +.. .+|...|..++ ...+.+|+.+++|+|+||||||+||
T Consensus 301 ~~~L~~w~~r~~~~~~s~~v~l~~--nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmp 378 (430)
T KOG4232|consen 301 LSCLPNWPIRFLFSSWSFWVTLTM--NHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMP 378 (430)
T ss_pred HHhccCchHHHHHHHHHHHHHHhh--hccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCC
Confidence 122223432 33333333333111 11 1111 111 22333343222 2468999999999999999999999
Q ss_pred CcCHHHHhHHhHhhhhcC--CC-cccHHHHHHHHHH
Q 021532 258 GNKLHKVREVAPEYYQGL--AS-YKSWSQVIYMYIM 290 (311)
Q Consensus 258 ~~~Lp~~~~~~~~~~~~~--p~-~~~~~~~~~~~~~ 290 (311)
+.+|+++.+.++|+|++. || .+.+++++..-+.
T Consensus 379 r~nL~~v~P~Vke~c~k~~l~y~~~~~~~~~~~~~~ 414 (430)
T KOG4232|consen 379 RHNLNKVAPLVKELCKKHGLPYREKPHFEALGDIIQ 414 (430)
T ss_pred ccchHHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 999999999999999974 88 5788888655443
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.89 E-value=3.1e-22 Score=183.35 Aligned_cols=222 Identities=21% Similarity=0.256 Sum_probs=138.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccch-hhccCCCCCCCCCC
Q 021532 53 DAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHL-EHHRFQGVDGIDMD 131 (311)
Q Consensus 53 ~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~-~HH~~~~~~~~Dpd 131 (311)
+.+|+..+.+++.+|..........+||++| |++++|+++|.++..+. ++.. |+..|+ .||++++++ +|||
T Consensus 66 ~~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~-~~~~H~~~HH~~v~tp-~DP~ 137 (314)
T cd03512 66 DLSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGH-FAIEHVRGHHRYVATP-EDPA 137 (314)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccc-eeeeecccCCCCCCCC-CCcc
Confidence 5688777666556655543344566888888 78999999999765443 4554 788887 799999998 7999
Q ss_pred CCChhHH--HHH-HHHHHHHHHHHHHHHHH-HhhhcccCCCCCC--hHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021532 132 IPSLTET--RMV-TNVVAKSIWVIFQLLFY-AFRPVFLKPKPPG--YWE-FINFSIQIALDITIVYFWGWKSFAYLILST 204 (311)
Q Consensus 132 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~~g~~~l~~~~~~~ 204 (311)
.....+. +++ +...+.. ...+. ..+...+++++.. +-+ ...+++++++.++.+.+.||..+.+++++.
T Consensus 138 tar~ge~~y~f~~r~~~g~~-----~~aw~~e~~rl~~~g~~~~~~~n~~l~~~~~~~a~~~~~~~~~g~~~l~~~l~~~ 212 (314)
T cd03512 138 TARRGESFYRFLPRALVGSF-----RSAWKLEKKRLRRKGRSPWSPRNEVLRYLALAVALLALAAALGGLAGLLFLLIQA 212 (314)
T ss_pred ccccCccHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8753321 111 1111110 00010 0011111222211 111 223344555555666677788888888888
Q ss_pred HhhhcccCCcceecccccccCCCcc--cc--------c---cccccceeecccccccccCCCCCCCCcCHHHHhHHhHhh
Q 021532 205 FVGGGMHPMAGHFISEHYVFNPDQE--TY--------S---YYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEY 271 (311)
Q Consensus 205 ~l~~~~h~~~~~~~~eh~~~~~~~~--t~--------s---~~~~l~~l~~n~nyH~eHHlfP~vP~~~Lp~~~~~~~~~ 271 (311)
.++.++ ....++.||+|+.+... +| | .....|++++|++||.|||.+|++|++.|+...+.
T Consensus 213 ~~g~~~--l~~~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~y~~L~~~~~~---- 286 (314)
T cd03512 213 FYAKSL--LELVNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTRPYQALRPFPEA---- 286 (314)
T ss_pred HHHHHH--HHHHHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCCchhhccCCccC----
Confidence 887655 22345789999765421 11 2 23578999999999999999999999999987643
Q ss_pred hhcCCC------cccHHHHHHHHHHcCCC
Q 021532 272 YQGLAS------YKSWSQVIYMYIMDRTV 294 (311)
Q Consensus 272 ~~~~p~------~~~~~~~~~~~~~~~~~ 294 (311)
+++|. ..++...+|.-+|||++
T Consensus 287 -p~lP~~y~~m~~~al~P~lw~~~m~~r~ 314 (314)
T cd03512 287 -PQLPSGYPVMALLALIPPLWRRVMDPRV 314 (314)
T ss_pred -CCCCccHHHHHHHHHhhHHHHHhhccCC
Confidence 23332 23556677888888875
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.66 E-value=5.2e-17 Score=128.68 Aligned_cols=60 Identities=33% Similarity=0.509 Sum_probs=54.3
Q ss_pred HHHHHHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCC
Q 021532 73 NLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIP 133 (311)
Q Consensus 73 ~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~ 133 (311)
+...++||++|+++++++++|++++.+++.+.+.|+.. |+..|+.||++++++++|||..
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGW-WRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHH-HHHHHHHHhcCcCCCCCCCccc
Confidence 55667999999999999999999999877788999995 9999999999999998899974
No 21
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=99.19 E-value=7.9e-11 Score=102.74 Aligned_cols=178 Identities=21% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHh-hcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 021532 75 FLAIHE-LSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQGVDGIDMDIPSLTETRMVTNVVAKSIWVIF 153 (311)
Q Consensus 75 ~~~~He-~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~ 153 (311)
.+.-|. .+|+++.-.+++..++....++....|..+ |...|..||++++++ .||..+. .+.+..+.+++.+.
T Consensus 63 t~G~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~-W~~~HR~HHr~tDTd-~DPh~~~--~kGfw~shigWm~~--- 135 (289)
T COG1398 63 TLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIE-WVGIHRKHHRKTDTD-QDPHYDS--FKGFWWSHIGWMLL--- 135 (289)
T ss_pred eeehhhhhhhhhcccchHHHHHHHHHHHhhcCCCcee-HHHHHHHhhcccCCC-CCCCccc--cccchhhhcceeee---
Confidence 344688 578888888888888887666655556654 999999999999888 7995432 11122223332211
Q ss_pred HHHHHHhhh---cccCCCCC---ChHHHHH-HHHHHHHH-HHHHHHHhHHHHHHHHHHHHhhhcccCCcceeccccc-c-
Q 021532 154 QLLFYAFRP---VFLKPKPP---GYWEFIN-FSIQIALD-ITIVYFWGWKSFAYLILSTFVGGGMHPMAGHFISEHY-V- 223 (311)
Q Consensus 154 ~~~~~~~~~---~~~~~~~~---~~~~~~~-~~~~~~~~-~~l~~~~g~~~l~~~~~~~~l~~~~h~~~~~~~~eh~-~- 223 (311)
......-++ .+.++.+. .+.-... ...++++- .+.+...|++.++|..+...+- .+|...-.+...|+ |
T Consensus 136 ~~~~~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~l~~~~~~gg~~gl~~~gv~r~~~-~~hat~~VNsl~H~~Gy 214 (289)
T COG1398 136 YSAEAKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLPLFIGYALGGWLGLIWGGVQRLVL-VQHATWCVNSLGHYIGY 214 (289)
T ss_pred cchhhcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHhhhhhhhcc
Confidence 110000010 01111111 1111111 11222222 2233444576666643322211 11110011222222 1
Q ss_pred --cCCCccccccccccceeecccccccccCCCCCCCCcCH
Q 021532 224 --FNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKL 261 (311)
Q Consensus 224 --~~~~~~t~s~~~~l~~l~~n~nyH~eHHlfP~vP~~~L 261 (311)
++.+. +..+..|+..++++.++|+.||.||+.-...+
T Consensus 215 r~fd~~d-~arN~ww~al~t~GEgwHNnHHafp~~ar~g~ 253 (289)
T COG1398 215 RPFDCRD-TARNCWWVALVTFGEGWHNNHHAFPNSARNGL 253 (289)
T ss_pred cccCCCC-CccceeEEEEeecccccccccccCcchhhcCc
Confidence 22222 23346888999999999999999998765543
No 22
>PLN02220 delta-9 acyl-lipid desaturase
Probab=99.11 E-value=1.5e-09 Score=98.39 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=46.7
Q ss_pred HHHHHHHHh-hcccccCCChhHHHHHHHHhccc-ccccccccccccchhhccCCCCCCCCCCCCC
Q 021532 72 HNLFLAIHE-LSHNLAFSTPAYNRWLGILANLP-VGVPMSVTFQKYHLEHHRFQGVDGIDMDIPS 134 (311)
Q Consensus 72 ~~~~~~~He-~~H~~~~~~~~~N~~~g~l~~~~-~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~ 134 (311)
.+..+..|- .+|+++-.++++..++..+.+.. .|.+. +|...|..||++++++ +||..+.
T Consensus 70 lGiT~GyHRl~sHrsfka~~~l~~~la~~g~~a~Qgs~~--~Wv~~HR~HH~~sDt~-~DPHsp~ 131 (299)
T PLN02220 70 LSITFSYHRNLAHRSFKLPKWLEYPFAYSALFALQGDPI--DWVSTHRFHHQFTDSD-RDPHSPI 131 (299)
T ss_pred HHHHHHHHHHHHhhcCcCcHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHhcCCC-CCccccc
Confidence 344555788 78999988888888887754443 46666 3899999999999998 6999874
No 23
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=98.76 E-value=2.5e-08 Score=89.09 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=55.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCCChhHHHHHHHHhc-ccccccccccccccchhhccCCCCCCCC
Q 021532 52 HDAGWLKILATAYFFGSFLNHNLFLAIHE-LSHNLAFSTPAYNRWLGILAN-LPVGVPMSVTFQKYHLEHHRFQGVDGID 129 (311)
Q Consensus 52 ~~~~w~~~~~~~~~~~~~~~~~~~~~~He-~~H~~~~~~~~~N~~~g~l~~-~~~~~~~~~~~~~~H~~HH~~~~~~~~D 129 (311)
....|...+. ++++..+...+...-.|. -+|+++..++++.-++..... ...|.++. |...|..||+++.++ +|
T Consensus 62 ~~~~w~t~~~-~~~l~~v~glgITag~HRlwsHRSyKa~kpLr~fla~~~~~A~Qg~~~~--WvrdHR~HHk~tdTD-~D 137 (321)
T KOG1600|consen 62 FSAKWETLLF-AFFLYAVGGLGITAGYHRLWSHRSYKAPKPLRYFLAYCNTLAFQGDIID--WVRDHRVHHKFTDTD-AD 137 (321)
T ss_pred ccchHHHHHH-HHHHHHHhhceeeeehhhhcccccccCCccHHHHHHHHHHHhccCChhH--HHhhhhhhccccccC-CC
Confidence 4446654433 344433322333344787 789999889999988887544 45688884 799999999999999 89
Q ss_pred CCCCC
Q 021532 130 MDIPS 134 (311)
Q Consensus 130 pd~~~ 134 (311)
|..+.
T Consensus 138 Phn~~ 142 (321)
T KOG1600|consen 138 PHNPR 142 (321)
T ss_pred CCCcc
Confidence 99875
No 24
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=98.69 E-value=5.8e-08 Score=81.53 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=46.0
Q ss_pred HHHHHHHh-hcccccCCChhHHHHHHHHhcccc-cccccccccccchhhccCCCCCCCCCCCCC
Q 021532 73 NLFLAIHE-LSHNLAFSTPAYNRWLGILANLPV-GVPMSVTFQKYHLEHHRFQGVDGIDMDIPS 134 (311)
Q Consensus 73 ~~~~~~He-~~H~~~~~~~~~N~~~g~l~~~~~-~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~ 134 (311)
+..+..|. ..|+++..++++..++..+..... |.+. +|...|..||++++++ +||..+.
T Consensus 18 git~G~HRl~aHrsfk~~~~l~~~l~~~g~~a~qgs~~--~W~~~HR~HH~~sDt~-~DPhs~~ 78 (178)
T cd03505 18 GITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPL--WWVADHRLHHRYSDTD-GDPHSPK 78 (178)
T ss_pred HHHHHHHHHHhhccCcCcHHHHHHHHHHHHHHcCcCHH--HHHHHHHHhhcccCCC-CCCCCcc
Confidence 33445677 789999889999888887655544 5555 4899999999999998 6999874
No 25
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=63.40 E-value=1.1 Score=27.69 Aligned_cols=22 Identities=18% Similarity=-0.096 Sum_probs=18.5
Q ss_pred ccccccccccccccc-cccccch
Q 021532 11 SSLSTLKLKSFLVLT-LGLFLSI 32 (311)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~p~ 32 (311)
.+|+...|+|||.++ ++|.||.
T Consensus 16 ~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 16 ASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred HHHHHHHHHhChHHHHHhCCCCC
Confidence 468888999999985 8888886
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=46.79 E-value=65 Score=28.17 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=21.8
Q ss_pred ccchhHHHHHHHHHHHHHHHH--HHccccHHHHHHHHHHHHHHHH
Q 021532 29 FLSIVDLQVTVVVLLQLYTAT--LLHDAGWLKILATAYFFGSFLN 71 (311)
Q Consensus 29 ~~p~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~ 71 (311)
.||+..|+.++.+++.+..++ -+...+||..++.++++|.+..
T Consensus 23 ~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 23 EDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred HCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 567777765554433322221 1122266666666666665543
No 27
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=39.61 E-value=1.1e+02 Score=27.72 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.1
Q ss_pred cccchhhccCCCCCC
Q 021532 113 QKYHLEHHRFQGVDG 127 (311)
Q Consensus 113 ~~~H~~HH~~~~~~~ 127 (311)
...|..||.++..+-
T Consensus 229 inyH~~HH~~P~vP~ 243 (288)
T cd03509 229 NNLHVVHHDLPTLPW 243 (288)
T ss_pred CCchHhhcCCCCCCc
Confidence 357999999998873
No 28
>PLN02601 beta-carotene hydroxylase
Probab=35.14 E-value=1.7e+02 Score=26.41 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHh-hcccccCCChhHHHHHHHHhcccccccccccccccchhhcc
Q 021532 64 YFFGSFLNHNLFLAIHE-LSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHR 121 (311)
Q Consensus 64 ~~~~~~~~~~~~~~~He-~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~ 121 (311)
+-+|..++.....+.|| ..|+-+-..+.. -.+|...-+..|..||.
T Consensus 213 iGlGITlYGiaYffVHDgLVHqRfp~~~~a------------~~~Y~rrl~~AHklHHa 259 (303)
T PLN02601 213 AGLGITVFGMAYMFVHDGLVHKRFPVGPIA------------NVPYLRKVAAAHQLHHT 259 (303)
T ss_pred HHHhHHHHHHHHHHHhhhhhccccccCCCC------------CCHHHHHHHHHHHhhcc
Confidence 34555555555667899 788754211110 11221113467999999
No 29
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=34.43 E-value=2.5e+02 Score=23.61 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=21.9
Q ss_pred HHHhhcccccCCChhHHHHHHHHhcccccccccccccccchhhccCCC
Q 021532 77 AIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKYHLEHHRFQG 124 (311)
Q Consensus 77 ~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~ 124 (311)
-.|--+|.... .+.+ +..+... |+-.+ +..|..||+.+-
T Consensus 100 q~HkWsH~~~~-~P~~---V~~LQ~~--gills---r~~H~~HH~aPh 138 (178)
T PF10520_consen 100 QFHKWSHTYKS-LPPW---VRFLQDA--GILLS---RKHHRIHHVAPH 138 (178)
T ss_pred HHHHHHcCCCC-CCHH---HHHHHHC--CcccC---chhhhccccCcc
Confidence 35999997554 3333 4433222 11121 568889998853
No 30
>PLN02434 fatty acid hydroxylase
Probab=27.62 E-value=2.2e+02 Score=25.20 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhccccccccccccccc
Q 021532 36 QVTVVVLLQLYTATLLHDAGWLKILATAYFFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILANLPVGVPMSVTFQKY 115 (311)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~~ 115 (311)
...+++...++..+.+.....+ ..+++.|+++...+....|-+.|. .+.-+...- .-+..
T Consensus 141 ~~~~~l~~~~~~l~~~~~~~~~---a~~~~~G~l~gYl~Yd~~Hy~lH~----~~p~~~~~r-------------~lkr~ 200 (237)
T PLN02434 141 AATAILCVPFWNLIALFATPAT---APALFGGGLLGYVMYDCTHYFLHH----GQPSTDVLR-------------NLKKY 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHHHHHHHHHHh----cCcchHHHH-------------HHHHH
Q ss_pred chhhccCCCCCC
Q 021532 116 HLEHHRFQGVDG 127 (311)
Q Consensus 116 H~~HH~~~~~~~ 127 (311)
|..||-...+.+
T Consensus 201 H~~HHfk~~~~~ 212 (237)
T PLN02434 201 HLNHHFRDQDKG 212 (237)
T ss_pred HHHHcCCCCCCC
No 31
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=27.45 E-value=1.4e+02 Score=27.00 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.8
Q ss_pred cccchhhccCCCCC
Q 021532 113 QKYHLEHHRFQGVD 126 (311)
Q Consensus 113 ~~~H~~HH~~~~~~ 126 (311)
.-.||.||+++|+.
T Consensus 236 EgwHNnHHafp~~a 249 (289)
T COG1398 236 EGWHNNHHAFPNSA 249 (289)
T ss_pred cccccccccCcchh
Confidence 35799999999876
No 32
>PLN02220 delta-9 acyl-lipid desaturase
Probab=25.13 E-value=4.2e+02 Score=24.32 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=22.5
Q ss_pred HHHhhcccccCC-ChhHHH-HHHHHhcccccccccccccccchhhccCCCCC
Q 021532 77 AIHELSHNLAFS-TPAYNR-WLGILANLPVGVPMSVTFQKYHLEHHRFQGVD 126 (311)
Q Consensus 77 ~~He~~H~~~~~-~~~~N~-~~g~l~~~~~~~~~~~~~~~~H~~HH~~~~~~ 126 (311)
++|-.|-+++-+ ...-|. +++.+. + + .-.||.||+++.+.
T Consensus 215 ~~H~~G~rpy~~~d~srN~~~lallt-------~--G-EgwHNnHHafP~sa 256 (299)
T PLN02220 215 ACHIWGSRTWKTKDTSRNVWWLSLFT-------M--G-ESWHNNHHAFESSA 256 (299)
T ss_pred hhhcccCCCCCCCCCcchhHHHHHHh-------c--c-ccccccccCCccch
Confidence 477777766643 222333 333211 2 1 24799999999754
No 33
>COG5282 Uncharacterized conserved protein [Function unknown]
Probab=22.33 E-value=62 Score=29.59 Aligned_cols=38 Identities=26% Similarity=0.527 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcccccCC-ChhHHHHHHHHhccccccccc
Q 021532 72 HNLFLAIHELSHNLAFS-TPAYNRWLGILANLPVGVPMS 109 (311)
Q Consensus 72 ~~~~~~~He~~H~~~~~-~~~~N~~~g~l~~~~~~~~~~ 109 (311)
...|+..||+.|..+|+ .+|+...++.......|....
T Consensus 168 ~~~~ia~~Evth~rlF~~vpWLs~~ls~v~~ya~g~~iD 206 (359)
T COG5282 168 FRTWIATHEVTHHRLFSAVPWLSSYLSAVLAYAVGMKID 206 (359)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccCccc
Confidence 45678899999998875 899999988877666666664
No 34
>PLN02505 omega-6 fatty acid desaturase
Probab=20.60 E-value=2.6e+02 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCChhHHHHHHHHhc
Q 021532 65 FFGSFLNHNLFLAIHELSHNLAFSTPAYNRWLGILAN 101 (311)
Q Consensus 65 ~~~~~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~ 101 (311)
++........+-++|-.---...+...||..-|.+.+
T Consensus 260 lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 260 LIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 3333434444556888766677788899988887654
Done!