Query 021532
Match_columns 311
No_of_seqs 166 out of 1547
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5w_G G gamma-I, guanine nucl 18.8 1.7E+02 0.0057 20.1 4.2 55 248-302 2-65 (77)
2 1uzc_A Hypothetical protein FL 15.1 1.7E+02 0.006 19.5 3.6 41 260-300 13-55 (71)
3 3cqb_A Probable protease HTPX 9.8 77 0.0026 22.9 0.5 13 73-85 83-95 (107)
4 3b4r_A Putative zinc metallopr 8.3 3.1E+02 0.011 22.5 3.8 11 76-86 51-61 (224)
5 2dod_A Transcription elongatio 8.2 1.8E+02 0.0062 20.0 1.9 35 264-298 19-55 (82)
6 2l9u_A Receptor tyrosine-prote 8.0 40 0.0014 19.3 -1.3 8 105-113 24-31 (40)
7 1e52_A Excinuclease ABC subuni 6.3 1.7E+02 0.0057 19.2 0.9 16 247-262 3-18 (63)
8 3tcm_A Alanine aminotransferas 5.6 1.3E+02 0.0045 27.8 0.0 17 116-132 4-20 (500)
9 2jsd_A Matrix metalloproteinas 5.0 2.1E+02 0.0071 21.9 0.9 12 75-86 110-121 (160)
10 2ko2_A Reticulon-4; NOGO, memb 4.9 2.2E+02 0.0074 19.6 0.8 36 247-284 3-38 (79)
No 1
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=18.82 E-value=1.7e+02 Score=20.09 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=25.0
Q ss_pred cccCCCCCCCCcCHHHHhHHhHhhhhc--CCC--cccHHHHHHHHHH-----cCCCCCcccccc
Q 021532 248 NEHHDFPRIPGNKLHKVREVAPEYYQG--LAS--YKSWSQVIYMYIM-----DRTVGPFSRMKR 302 (311)
Q Consensus 248 ~eHHlfP~vP~~~Lp~~~~~~~~~~~~--~p~--~~~~~~~~~~~~~-----~~~~~~~~~~~~ 302 (311)
.-||-.++---.++.++++.+.++-.| ... ..--..-+..|.. ||.+.+....++
T Consensus 2 ~~~~~M~s~~ss~i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~~~~~DpLl~Gvp~~~N 65 (77)
T 3v5w_G 2 HHHHHMASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASEN 65 (77)
T ss_dssp ------------CHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHSGGGCTTTSCCCGGGC
T ss_pred cccccccccchhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCC
Confidence 345555666667788888888765333 222 1111122344544 999998887664
No 2
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=15.09 E-value=1.7e+02 Score=19.48 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=29.8
Q ss_pred CHHHHhHHhHhhhhcCCC--cccHHHHHHHHHHcCCCCCcccc
Q 021532 260 KLHKVREVAPEYYQGLAS--YKSWSQVIYMYIMDRTVGPFSRM 300 (311)
Q Consensus 260 ~Lp~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
..-++.+..++++++... ..+|-+++...+.||+..+..++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~ 55 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKL 55 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSH
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCH
Confidence 345556666777776433 67899999888999999987653
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=9.84 E-value=77 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHHHhhcccc
Q 021532 73 NLFLAIHELSHNL 85 (311)
Q Consensus 73 ~~~~~~He~~H~~ 85 (311)
...+++||.+|..
T Consensus 83 l~aVlaHElgH~~ 95 (107)
T 3cqb_A 83 AEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456799999963
No 4
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=8.33 E-value=3.1e+02 Score=22.54 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.1
Q ss_pred HHHHhhccccc
Q 021532 76 LAIHELSHNLA 86 (311)
Q Consensus 76 ~~~He~~H~~~ 86 (311)
++.||.+|.-.
T Consensus 51 v~~HElgH~~~ 61 (224)
T 3b4r_A 51 VVLHELGHSYV 61 (224)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34799999643
No 5
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=8.15 E-value=1.8e+02 Score=20.05 Aligned_cols=35 Identities=6% Similarity=0.152 Sum_probs=25.0
Q ss_pred HhHHhHhhhhcC--CCcccHHHHHHHHHHcCCCCCcc
Q 021532 264 VREVAPEYYQGL--ASYKSWSQVIYMYIMDRTVGPFS 298 (311)
Q Consensus 264 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~ 298 (311)
+.+..++++.+. +-..+|-.++...+.||++....
T Consensus 19 a~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~ 55 (82)
T 2dod_A 19 RMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN 55 (82)
T ss_dssp HHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC
T ss_pred HHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC
Confidence 344555666654 33678889998899999998875
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=8.00 E-value=40 Score=19.32 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=3.3
Q ss_pred ccccccccc
Q 021532 105 GVPMSVTFQ 113 (311)
Q Consensus 105 ~~~~~~~~~ 113 (311)
|..+-. ||
T Consensus 24 g~tfly-wr 31 (40)
T 2l9u_A 24 GGTFLY-WR 31 (40)
T ss_dssp HHHHHH-HH
T ss_pred CceeEE-Ec
Confidence 333433 54
No 7
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=6.32 E-value=1.7e+02 Score=19.18 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=8.1
Q ss_pred ccccCCCCCCCCcCHH
Q 021532 247 HNEHHDFPRIPGNKLH 262 (311)
Q Consensus 247 H~eHHlfP~vP~~~Lp 262 (311)
|.-||+-|..-.-.+.
T Consensus 3 ~~~~~~~~~~~~~~ls 18 (63)
T 1e52_A 3 HHHHHLEPDNVPMDMS 18 (63)
T ss_dssp -----CCCTTSSCCSC
T ss_pred cccccCCcccchhhcC
Confidence 6678999987776654
No 8
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=5.56 E-value=1.3e+02 Score=27.82 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=0.0
Q ss_pred chhhccCCCCCCCCCCC
Q 021532 116 HLEHHRFQGVDGIDMDI 132 (311)
Q Consensus 116 H~~HH~~~~~~~~Dpd~ 132 (311)
|..||.+.+++++|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (500)
T 3tcm_A 4 HHHHHHHHGTDDDDKMA 20 (500)
T ss_dssp -----------------
T ss_pred cccccccCCCCCCCCcc
Confidence 33444455665556553
No 9
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=5.01 E-value=2.1e+02 Score=21.87 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=8.3
Q ss_pred HHHHHhhccccc
Q 021532 75 FLAIHELSHNLA 86 (311)
Q Consensus 75 ~~~~He~~H~~~ 86 (311)
.++.||.+|---
T Consensus 110 ~v~~HEiGHaLG 121 (160)
T 2jsd_A 110 TVAAHEFGHALG 121 (160)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHhHhhhc
Confidence 345899999633
No 10
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=4.93 E-value=2.2e+02 Score=19.59 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCcCHHHHhHHhHhhhhcCCCcccHHHH
Q 021532 247 HNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQV 284 (311)
Q Consensus 247 H~eHHlfP~vP~~~Lp~~~~~~~~~~~~~p~~~~~~~~ 284 (311)
|.-||+-|+-=+-+..-++.+-+.- +++| +++|.+.
T Consensus 3 ~~~~~~~~~sfRiYk~vlqavqKtd-~~hP-Fk~YLd~ 38 (79)
T 2ko2_A 3 HHHHHLVPRGMRIYKGVIQAIQKSD-EGHP-FRAYLES 38 (79)
T ss_dssp ----------CTHHHHTHHHHHCTT-TTCC-SHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCC-CCCC-ccccccc
Done!