BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021533
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V8T|A Chain A, Crystal Structure Of Mn Catalase From Thermus Thermophilus
           Complexed With Chloride
 pdb|2V8T|B Chain B, Crystal Structure Of Mn Catalase From Thermus Thermophilus
           Complexed With Chloride
 pdb|2V8U|A Chain A, Atomic Resolution Structure Of Mn Catalase From Thermus
           Thermophilus
 pdb|2V8U|B Chain B, Atomic Resolution Structure Of Mn Catalase From Thermus
           Thermophilus
          Length = 302

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 173 IAANECGTVS--ASSISEYLEMLPGWHVEDLLDSSSDPLGFCK 213
           IA  E G +   A++I+  L   PG  +E+ +D +S PLGF K
Sbjct: 66  IATEELGHIELVAATINSLLAKNPGKDLEEGVDPASTPLGFAK 108


>pdb|2CWL|A Chain A, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
           From Thermus Thermophilus Hb8
 pdb|2CWL|B Chain B, Crystal Structure Of Manganese-Free Form Of Pseudocatalase
           From Thermus Thermophilus Hb8
          Length = 302

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 173 IAANECGTVS--ASSISEYLEMLPGWHVEDLLDSSSDPLGFCK 213
           IA  E G +   A++I+  L   PG  +E+ +D  S PLGF K
Sbjct: 66  IATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLGFAK 108


>pdb|4AMC|A Chain A, Crystal Structure Of Lactobacillus Reuteri 121
           N-Terminally Truncated Glucansucrase Gtfa
          Length = 1049

 Score = 27.7 bits (60), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 210 GFCKGNDGTLPFLDADLDCNLSSFSSERVGIW 241
           GF KGNDG   F D   +   ++F  + VG W
Sbjct: 909 GFVKGNDGNYYFYDLAGNMVKNTFIEDSVGNW 940


>pdb|2EJX|A Chain A, Crystal Structure Of The Hypothetical Protein St0812 From
           Sulfolobus Tokodaii
          Length = 139

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 284 YTEDVFTVPQISPQLAGFKRSRPNIWE 310
           +++  FT+PQI P +A  K   P I+E
Sbjct: 24  FSDPAFTIPQIFPGIASIKCIEPEIFE 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.129    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,371,404
Number of Sequences: 62578
Number of extensions: 294541
Number of successful extensions: 707
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 10
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)