Query 021533
Match_columns 311
No_of_seqs 176 out of 577
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.9 6.5E-10 2.2E-14 87.1 5.2 93 2-101 3-100 (101)
2 2dja_A Midline-2; tripartite m 95.7 0.0061 2.1E-07 46.0 3.2 61 39-105 2-63 (84)
3 2did_A Tripartite motif protei 94.3 0.025 8.4E-07 39.4 2.6 42 55-103 8-50 (53)
4 2jun_A Midline-1; B-BOX, TRIM, 94.3 0.013 4.4E-07 45.3 1.2 43 56-98 4-49 (101)
5 2d8u_A Ubiquitin ligase TRIM63 93.7 0.029 9.8E-07 40.2 2.0 45 55-105 8-53 (64)
6 2yvr_A Transcription intermedi 93.4 0.034 1.2E-06 38.2 2.0 42 56-103 7-48 (50)
7 1fre_A Nuclear factor XNF7; zi 93.3 0.041 1.4E-06 36.4 2.2 28 56-84 4-31 (42)
8 3ddt_A E3 ubiquitin-protein li 93.1 0.042 1.4E-06 37.5 2.0 41 55-101 6-47 (48)
9 2ffw_A Midline-1; B-BOX, ring 92.6 0.064 2.2E-06 40.8 2.6 44 2-45 30-76 (78)
10 2yrg_A Tripartite motif-contai 92.5 0.081 2.8E-06 38.0 2.9 43 55-103 14-56 (59)
11 2csv_A Tripartite motif protei 92.1 0.058 2E-06 39.8 1.8 57 39-104 4-60 (72)
12 2egm_A Tripartite motif-contai 91.8 0.037 1.3E-06 39.6 0.4 32 52-84 15-46 (57)
13 2ffw_A Midline-1; B-BOX, ring 89.4 0.11 3.7E-06 39.5 1.1 44 55-98 30-76 (78)
14 2did_A Tripartite motif protei 76.1 2.7 9.4E-05 28.8 3.7 40 3-49 9-49 (53)
15 2fc7_A ZZZ3 protein; structure 74.9 5.5 0.00019 30.7 5.4 48 56-103 22-76 (82)
16 2yrg_A Tripartite motif-contai 67.6 5.5 0.00019 28.2 3.7 40 3-49 15-55 (59)
17 3ddt_A E3 ubiquitin-protein li 65.6 4.8 0.00016 27.0 2.9 32 4-35 8-40 (48)
18 2yvr_A Transcription intermedi 64.3 6 0.0002 26.6 3.2 40 3-48 7-46 (50)
19 1fre_A Nuclear factor XNF7; zi 64.0 3.1 0.00011 27.1 1.7 31 3-34 4-35 (42)
20 4hc9_A Trans-acting T-cell-spe 62.0 3.3 0.00011 33.9 1.8 81 2-84 5-89 (115)
21 2d8u_A Ubiquitin ligase TRIM63 57.5 8.2 0.00028 27.1 3.1 41 3-49 9-50 (64)
22 2dja_A Midline-2; tripartite m 57.0 9.3 0.00032 28.2 3.5 40 4-49 20-60 (84)
23 2d8v_A Zinc finger FYVE domain 55.0 6.4 0.00022 29.9 2.2 49 53-103 6-55 (67)
24 3jst_A Putative pterin-4-alpha 54.9 4.6 0.00016 31.7 1.5 17 184-200 9-25 (97)
25 2d8v_A Zinc finger FYVE domain 53.9 11 0.00039 28.5 3.4 47 3-51 9-56 (67)
26 2egm_A Tripartite motif-contai 50.6 5.9 0.0002 27.9 1.3 31 3-34 19-50 (57)
27 2lri_C Autoimmune regulator; Z 48.8 6.8 0.00023 28.9 1.5 47 3-64 13-59 (66)
28 2ebb_A Pterin-4-alpha-carbinol 47.9 6.8 0.00023 31.1 1.5 17 184-200 6-22 (101)
29 2v6u_A Pterin-4A-carbinolamine 47.5 7 0.00024 31.1 1.5 17 184-200 12-28 (104)
30 1z60_A TFIIH basal transcripti 43.8 6.5 0.00022 28.8 0.7 32 4-35 17-51 (59)
31 1mm2_A MI2-beta; PHD, zinc fin 40.8 23 0.00077 25.3 3.2 48 3-65 10-57 (61)
32 1z60_A TFIIH basal transcripti 39.4 7 0.00024 28.7 0.2 31 57-87 17-50 (59)
33 4gne_A Histone-lysine N-methyl 38.1 33 0.0011 27.6 4.1 65 3-84 16-86 (107)
34 2csv_A Tripartite motif protei 38.0 19 0.00066 25.9 2.5 38 3-47 19-56 (72)
35 2e5r_A Dystrobrevin alpha; ZZ 36.4 15 0.00053 26.7 1.7 44 56-99 12-59 (63)
36 1v6g_A Actin binding LIM prote 35.5 12 0.00041 27.1 1.0 64 14-84 3-72 (81)
37 1f62_A Transcription factor WS 35.2 20 0.00069 24.3 2.1 49 4-64 2-50 (51)
38 3shb_A E3 ubiquitin-protein li 34.4 28 0.00096 26.3 3.0 37 20-63 39-76 (77)
39 2jrp_A Putative cytoplasmic pr 34.4 27 0.00092 27.2 2.9 57 1-83 1-59 (81)
40 1gea_A Pituitary adenylate cyc 34.1 9.8 0.00033 23.9 0.3 21 181-204 5-25 (26)
41 3o36_A Transcription intermedi 32.8 26 0.00088 29.7 2.8 47 3-64 5-51 (184)
42 3pfq_A PKC-B, PKC-beta, protei 32.3 19 0.00066 36.2 2.2 28 4-34 50-77 (674)
43 2xzl_A ATP-dependent helicase 32.2 17 0.00057 38.0 1.8 81 3-83 12-106 (802)
44 2e6r_A Jumonji/ARID domain-con 30.5 29 0.001 26.8 2.6 49 3-63 17-65 (92)
45 1qxf_A GR2, 30S ribosomal prot 29.2 14 0.00049 27.9 0.5 31 1-32 6-36 (66)
46 3u5c_b RP61, YS20, 40S ribosom 28.3 20 0.00067 28.1 1.2 31 1-32 33-63 (82)
47 2dj7_A Actin-binding LIM prote 27.7 29 0.00098 25.4 2.0 57 20-82 13-69 (80)
48 2xzm_6 RPS27E; ribosome, trans 26.6 16 0.00056 28.5 0.5 31 1-32 31-61 (81)
49 2yql_A PHD finger protein 21A; 26.5 38 0.0013 23.5 2.3 46 3-63 10-55 (56)
50 3j20_W 30S ribosomal protein S 26.5 17 0.00059 27.1 0.6 32 1-33 14-45 (63)
51 2ysm_A Myeloid/lymphoid or mix 25.9 53 0.0018 25.5 3.4 67 3-87 8-81 (111)
52 3iz6_X 40S ribosomal protein S 25.0 21 0.00071 28.3 0.7 32 1-33 35-66 (86)
53 3u5n_A E3 ubiquitin-protein li 23.6 39 0.0013 29.2 2.4 47 3-64 8-54 (207)
54 1tot_A CREB-binding protein; z 23.6 25 0.00087 24.7 0.9 31 2-32 6-38 (52)
55 2ro1_A Transcription intermedi 23.4 54 0.0019 28.2 3.2 47 3-64 3-49 (189)
56 2yqq_A Zinc finger HIT domain- 23.3 33 0.0011 24.9 1.5 24 4-28 14-38 (56)
57 2yt5_A Metal-response element- 22.8 32 0.0011 24.4 1.3 55 3-66 7-63 (66)
58 2fc7_A ZZZ3 protein; structure 22.5 1.7E+02 0.006 22.1 5.6 32 2-33 21-59 (82)
59 1x6a_A LIMK-2, LIM domain kina 22.3 49 0.0017 23.7 2.3 62 15-83 4-72 (81)
60 2kwj_A Zinc finger protein DPF 20.9 47 0.0016 26.3 2.1 48 4-63 60-107 (114)
61 2e6s_A E3 ubiquitin-protein li 20.7 72 0.0025 23.9 3.0 16 19-34 38-53 (77)
62 1faq_A RAF-1; transferase, ser 20.7 36 0.0012 22.9 1.2 25 3-34 15-39 (52)
63 2yqq_A Zinc finger HIT domain- 20.7 35 0.0012 24.7 1.2 23 56-79 13-35 (56)
64 1xwh_A Autoimmune regulator; P 20.3 46 0.0016 23.9 1.8 48 3-65 9-56 (66)
65 3asl_A E3 ubiquitin-protein li 20.3 76 0.0026 23.2 3.0 38 19-63 30-68 (70)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.95 E-value=6.5e-10 Score=87.14 Aligned_cols=93 Identities=23% Similarity=0.517 Sum_probs=75.1
Q ss_pred CCCCcccCC---CCcEEEeccCccccchhhccccccCccccCCceee-cccCCCCCCCCccccccccceEEeecCCcccc
Q 021533 2 KIQCDVCNK---SEASVFCTADEAALCDTCDHRVHHANKLASKHHRF-SLLHPSSKHFPICDVCQERRAFLFCQQDRAIL 77 (311)
Q Consensus 2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rv-pl~~ps~k~~~LCD~CqsapA~vfC~aDsA~L 77 (311)
...|++|.. .+|+.+|..+.+.||..|...+|..++.+.+|..+ |+.. .+.....|+.|+..+..+||..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~-~~~~~~~C~~H~~e~l~~fC~~~~~~i 81 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPD-SHIRGLMCLEHEDEKVNMYCVTDDQLI 81 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCS-CCSSCCCCSSCSSSCCCEEETTTTEEE
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccc-cCccCCcCcCcCCCcceEECCCCCCcc
Confidence 367999984 68999999999999999999999988888999987 3332 123346899999889999999999999
Q ss_pred ccccCc-CccCCCcccCCccceeec
Q 021533 78 CRDCDI-PIHTANEHTQKHNRFLLT 101 (311)
Q Consensus 78 C~~CD~-~iHsAN~la~rH~Rvpl~ 101 (311)
|..|.. ..|. .|..++|.
T Consensus 82 C~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 82 CALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp CHHHHHHTTTS------SSCBCCCC
T ss_pred chhcCCCCCcC------CCCeecCC
Confidence 999987 4453 46555553
No 2
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=95.75 E-value=0.0061 Score=46.04 Aligned_cols=61 Identities=15% Similarity=0.255 Sum_probs=44.3
Q ss_pred cCCceeecccCCCCCCCCccccccccceEEeecCCccccccccCcC-ccCCCcccCCccceeecCccc
Q 021533 39 ASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIP-IHTANEHTQKHNRFLLTGVKL 105 (311)
Q Consensus 39 a~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~-iHsAN~la~rH~Rvpl~~~~~ 105 (311)
+.+|..+............|+.|...+..+||..|...+|..|... .| +.|..++|..+..
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~ 63 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE 63 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHH
Confidence 4567776543211334468999988889999999999999999873 34 4677888777643
No 3
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.31 E-value=0.025 Score=39.42 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=34.7
Q ss_pred CCccccccccceEEeecCCccccccccCc-CccCCCcccCCccceeecCc
Q 021533 55 FPICDVCQERRAFLFCQQDRAILCRDCDI-PIHTANEHTQKHNRFLLTGV 103 (311)
Q Consensus 55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~-~iHsAN~la~rH~Rvpl~~~ 103 (311)
...|+.|+ .+..+||..|...+|..|.. ..| +.|..++|..+
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 35799998 78999999999999999987 334 57888888765
No 4
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.28 E-value=0.013 Score=45.32 Aligned_cols=43 Identities=19% Similarity=0.466 Sum_probs=37.9
Q ss_pred Cccccccc---cceEEeecCCccccccccCcCccCCCcccCCccce
Q 021533 56 PICDVCQE---RRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRF 98 (311)
Q Consensus 56 ~LCD~Cqs---apA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rv 98 (311)
..|++|.. .+|..+|..|.+.+|..|....|..+....+|.++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 68999999999999999999888877777888876
No 5
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=93.68 E-value=0.029 Score=40.20 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=36.4
Q ss_pred CCccccccccceEEeecCCccccccccCcC-ccCCCcccCCccceeecCccc
Q 021533 55 FPICDVCQERRAFLFCQQDRAILCRDCDIP-IHTANEHTQKHNRFLLTGVKL 105 (311)
Q Consensus 55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~~-iHsAN~la~rH~Rvpl~~~~~ 105 (311)
...|+.|...+..+||..|...+|..|... .| +.|..+||..+..
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a~~ 53 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSVFQ 53 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTCCS
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHHHH
Confidence 357999988889999999999999999864 44 3588888777643
No 6
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=93.43 E-value=0.034 Score=38.16 Aligned_cols=42 Identities=29% Similarity=0.694 Sum_probs=34.5
Q ss_pred CccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533 56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV 103 (311)
Q Consensus 56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~ 103 (311)
..|..|...+..+||..|...+|..|....| +.|..++|..+
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea 48 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA 48 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence 5799998888999999999999999987544 46777777664
No 7
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=93.27 E-value=0.041 Score=36.39 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=24.9
Q ss_pred CccccccccceEEeecCCccccccccCcC
Q 021533 56 PICDVCQERRAFLFCQQDRAILCRDCDIP 84 (311)
Q Consensus 56 ~LCD~CqsapA~vfC~aDsA~LC~~CD~~ 84 (311)
.+|+.|+ .+..+||..|...+|..|...
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 4799997 678999999999999999873
No 8
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=93.05 E-value=0.042 Score=37.53 Aligned_cols=41 Identities=20% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCccccccccceEEeecCCccccccccCc-CccCCCcccCCccceeec
Q 021533 55 FPICDVCQERRAFLFCQQDRAILCRDCDI-PIHTANEHTQKHNRFLLT 101 (311)
Q Consensus 55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~-~iHsAN~la~rH~Rvpl~ 101 (311)
..+|..|...+..+||..|...+|..|.. ..| +.|..+||.
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 46799999788999999999999999974 344 346666653
No 9
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=92.60 E-value=0.064 Score=40.80 Aligned_cols=44 Identities=27% Similarity=0.606 Sum_probs=37.0
Q ss_pred CCCCcccCC---CCcEEEeccCccccchhhccccccCccccCCceee
Q 021533 2 KIQCDVCNK---SEASVFCTADEAALCDTCDHRVHHANKLASKHHRF 45 (311)
Q Consensus 2 k~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rv 45 (311)
.+.||+|.. .+|+..|..+.+.||..|=+..|...+.+.+|.=+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 368999975 67999999999999999988888876777788643
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.50 E-value=0.081 Score=37.96 Aligned_cols=43 Identities=26% Similarity=0.601 Sum_probs=34.1
Q ss_pred CCccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCc
Q 021533 55 FPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGV 103 (311)
Q Consensus 55 ~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~ 103 (311)
..+|..|+ .+..+||..|...+|..|..... .+.|..++|..+
T Consensus 14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~e-----H~~H~~~~l~ea 56 (59)
T 2yrg_A 14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQE-----HRGHHTFPTSGP 56 (59)
T ss_dssp SSBCTTTC-CBCCEEETTTCSEECHHHHTSTT-----TTTCCEEECCSS
T ss_pred CccChhhC-ceeeeecCCCCcEEecccCCCCc-----CCCCcEeeHHHH
Confidence 35799998 57899999999999999987332 256788887765
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.08 E-value=0.058 Score=39.76 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=40.8
Q ss_pred cCCceeecccCCCCCCCCccccccccceEEeecCCccccccccCcCccCCCcccCCccceeecCcc
Q 021533 39 ASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRFLLTGVK 104 (311)
Q Consensus 39 a~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rvpl~~~~ 104 (311)
+.+|+-+.-. .......|+.|+ .+..+||..|...+|..|....| +.|..++|..+.
T Consensus 4 ~~~H~L~~p~--~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~ 60 (72)
T 2csv_A 4 GSSGQLLEPI--RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK 60 (72)
T ss_dssp SCCCCCCCCS--SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred ccCCcccCCc--cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence 4456655321 223446899995 78999999999999999987434 467888877653
No 12
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.78 E-value=0.037 Score=39.56 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=27.0
Q ss_pred CCCCCccccccccceEEeecCCccccccccCcC
Q 021533 52 SKHFPICDVCQERRAFLFCQQDRAILCRDCDIP 84 (311)
Q Consensus 52 ~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD~~ 84 (311)
.....+|..|+ .+..+||..|...+|..|...
T Consensus 15 ~~~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 15 VTDQGICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp CCTTSBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred ccccCcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 34456899995 689999999999999999863
No 13
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=89.42 E-value=0.11 Score=39.50 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=36.9
Q ss_pred CCccccccc---cceEEeecCCccccccccCcCccCCCcccCCccce
Q 021533 55 FPICDVCQE---RRAFLFCQQDRAILCRDCDIPIHTANEHTQKHNRF 98 (311)
Q Consensus 55 ~~LCD~Cqs---apA~vfC~aDsA~LC~~CD~~iHsAN~la~rH~Rv 98 (311)
...|++|.. .+|...|..|.+.+|..|-...|......++|..+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 468999986 67999999999999999988768777777788754
No 14
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=76.05 E-value=2.7 Score=28.77 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=30.2
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcc-ccccCccccCCceeecccC
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDH-RVHHANKLASKHHRFSLLH 49 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~rH~Rvpl~~ 49 (311)
..|..-+ .+-.+||..|...+|..|-. .-|. .|..+||..
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~e 49 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSG 49 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCC
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHH
Confidence 4577776 67889999999999999976 4553 566666653
No 15
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=74.85 E-value=5.5 Score=30.67 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=36.3
Q ss_pred CccccccccceE---EeecCCcc----ccccccCcCccCCCcccCCccceeecCc
Q 021533 56 PICDVCQERRAF---LFCQQDRA----ILCRDCDIPIHTANEHTQKHNRFLLTGV 103 (311)
Q Consensus 56 ~LCD~CqsapA~---vfC~aDsA----~LC~~CD~~iHsAN~la~rH~Rvpl~~~ 103 (311)
..||.|...+.. +.|..|.- -||..|-...+..+.+...|.-+.|...
T Consensus 22 ~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp CCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred CCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 379999987654 88999975 6999999887666666667777666544
No 16
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.55 E-value=5.5 Score=28.20 Aligned_cols=40 Identities=25% Similarity=0.582 Sum_probs=29.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcc-ccccCccccCCceeecccC
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDH-RVHHANKLASKHHRFSLLH 49 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~rH~Rvpl~~ 49 (311)
..|..-+ .+-.+||..|...+|..|-. .-|. .|..++|..
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~e 55 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSG 55 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHH
Confidence 3576665 46789999999999999976 4454 466666543
No 17
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=65.58 E-value=4.8 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.663 Sum_probs=23.6
Q ss_pred CCcccCCCCcEEEeccCccccchhhc-cccccC
Q 021533 4 QCDVCNKSEASVFCTADEAALCDTCD-HRVHHA 35 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD-~~vHsA 35 (311)
.|..-.+.+-.+||..|...+|..|- ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 35554445678999999999999996 345653
No 18
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=64.31 E-value=6 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=30.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeeccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLL 48 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~ 48 (311)
..|..-...+-.+||..|...+|..|-..-|. .|..++|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ 46 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE 46 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence 35777655678899999999999999775554 56666654
No 19
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=64.04 E-value=3.1 Score=27.06 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=24.2
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcc-cccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDH-RVHH 34 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (311)
..|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 3576665 57789999999999999976 4454
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=62.00 E-value=3.3 Score=33.90 Aligned_cols=81 Identities=19% Similarity=0.447 Sum_probs=51.8
Q ss_pred CCCCcccCCCCcEEEeccCc-cccchhhc--cccccCccccCCceeecccCCCCCCCCccccccccceEEeec-CCcccc
Q 021533 2 KIQCDVCNKSEASVFCTADE-AALCDTCD--HRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQ-QDRAIL 77 (311)
Q Consensus 2 k~~Cd~C~~a~A~vyC~aD~-A~LC~~CD--~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~-aDsA~L 77 (311)
...|..|+.....++=+.+. ..||..|. .+.|..|....+-.+-. ....+....|..|+.....++=. .+...|
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~--~~~~~~~~~C~~C~t~~tp~WRr~~~g~~l 82 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL--SAARRAGTSCANCQTTTTTLWRRNANGDPV 82 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC--CCCCCTTCCCTTTCCSCCSSCEECTTSCEE
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc--cccccccccCCCcCCCCcceeEECCCCCCc
Confidence 45799999766555555544 47999999 56677776544333321 12234456899999877655543 333589
Q ss_pred ccccCcC
Q 021533 78 CRDCDIP 84 (311)
Q Consensus 78 C~~CD~~ 84 (311)
|..|-+.
T Consensus 83 CNaCgl~ 89 (115)
T 4hc9_A 83 CNACGLY 89 (115)
T ss_dssp CHHHHHH
T ss_pred chHHHHH
Confidence 9999764
No 21
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=57.48 E-value=8.2 Score=27.05 Aligned_cols=41 Identities=17% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcc-ccccCccccCCceeecccC
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDH-RVHHANKLASKHHRFSLLH 49 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~rH~Rvpl~~ 49 (311)
..|..-...+-.+||..|...+|..|-. .-|. .|.-+||..
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~ 50 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQS 50 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTT
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHH
Confidence 3577775567889999999999999975 3564 477776654
No 22
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=57.02 E-value=9.3 Score=28.22 Aligned_cols=40 Identities=23% Similarity=0.552 Sum_probs=29.3
Q ss_pred CCcccCCCCcEEEeccCccccchhhcc-ccccCccccCCceeecccC
Q 021533 4 QCDVCNKSEASVFCTADEAALCDTCDH-RVHHANKLASKHHRFSLLH 49 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~rH~Rvpl~~ 49 (311)
.|..-...+-.+||..|...+|..|-. .-|. .|.-++|..
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~e 60 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLND 60 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHH
Confidence 566665567889999999999999977 5554 355555543
No 23
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=55.00 E-value=6.4 Score=29.86 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=40.8
Q ss_pred CCCCccccccccceEEeecCC-ccccccccCcCccCCCcccCCccceeecCc
Q 021533 53 KHFPICDVCQERRAFLFCQQD-RAILCRDCDIPIHTANEHTQKHNRFLLTGV 103 (311)
Q Consensus 53 k~~~LCD~CqsapA~vfC~aD-sA~LC~~CD~~iHsAN~la~rH~Rvpl~~~ 103 (311)
...+.|-+|... |.+.|..| .-..|..|-...|- ...-+.|+-+++...
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 456789999987 99999998 67999999999994 567789998887554
No 24
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=54.89 E-value=4.6 Score=31.75 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=14.8
Q ss_pred ccHHHHHhhCCCccccc
Q 021533 184 SSISEYLEMLPGWHVED 200 (311)
Q Consensus 184 ssiseyl~~~pgw~ved 200 (311)
.-|.++|..||||+++|
T Consensus 9 ~ei~~~L~~l~gW~~~~ 25 (97)
T 3jst_A 9 SEMNEALRALDGWQKVD 25 (97)
T ss_dssp HHHHHHHHTSTTCEECT
T ss_pred HHHHHHhhcCCCCeEeC
Confidence 56899999999999874
No 25
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.95 E-value=11 Score=28.49 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=38.9
Q ss_pred CCCcccCCCCcEEEeccC-ccccchhhccccccCccccCCceeecccCCC
Q 021533 3 IQCDVCNKSEASVFCTAD-EAALCDTCDHRVHHANKLASKHHRFSLLHPS 51 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD-~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps 51 (311)
+-|-+|.. -|+|.|..+ .-.+|.+|=+..|- ..-.+.|+-+++..|.
T Consensus 9 pWC~ICne-DAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~ 56 (67)
T 2d8v_A 9 PWCCICNE-DATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRR 56 (67)
T ss_dssp SSCTTTCS-CCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSS
T ss_pred CeeEEeCC-CCeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCC
Confidence 46899996 499999996 67899999999996 4668899999886543
No 26
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.59 E-value=5.9 Score=27.90 Aligned_cols=31 Identities=32% Similarity=0.704 Sum_probs=24.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcc-cccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDH-RVHH 34 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (311)
..|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3577764 67889999999999999976 4444
No 27
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=48.78 E-value=6.8 Score=28.87 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCcccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsa 64 (311)
..|.+|++. +...+|..|++..|.. .| +.+|.. .++..|.|..|...
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~-----Cl-~P~l~~-~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWR-----CH-FPAGTS-RPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHH-----HH-CTTTCC-CCSSSCCCTTTTTC
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecc-----cC-CCccCc-CCCCCEECccccCC
Confidence 469999853 4577888999888873 11 122322 24456899999754
No 28
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=47.94 E-value=6.8 Score=31.07 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=14.5
Q ss_pred ccHHHHHhhCCCccccc
Q 021533 184 SSISEYLEMLPGWHVED 200 (311)
Q Consensus 184 ssiseyl~~~pgw~ved 200 (311)
.-|.++|..||||++++
T Consensus 6 ~ei~~~L~~l~gW~~~~ 22 (101)
T 2ebb_A 6 EEVQALLEKADGWKLAD 22 (101)
T ss_dssp HHHHHHHHTSTTCEEET
T ss_pred HHHHHHhhcCCCCeECC
Confidence 45889999999999875
No 29
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=47.53 E-value=7 Score=31.10 Aligned_cols=17 Identities=24% Similarity=0.726 Sum_probs=14.9
Q ss_pred ccHHHHHhhCCCccccc
Q 021533 184 SSISEYLEMLPGWHVED 200 (311)
Q Consensus 184 ssiseyl~~~pgw~ved 200 (311)
.-|.++|..||||++++
T Consensus 12 ~ei~~~L~~l~gW~~~~ 28 (104)
T 2v6u_A 12 ARLLQLHKTVPQWHLTD 28 (104)
T ss_dssp HHHHHHHTTSTTSEECG
T ss_pred HHHHHHhhcCCCCeEeC
Confidence 56999999999999875
No 30
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.82 E-value=6.5 Score=28.82 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=25.2
Q ss_pred CCcccCCCCc---EEEeccCccccchhhccccccC
Q 021533 4 QCDVCNKSEA---SVFCTADEAALCDTCDHRVHHA 35 (311)
Q Consensus 4 ~Cd~C~~a~A---~vyC~aD~A~LC~~CD~~vHsA 35 (311)
.|-.|+..-. .+.|......+|.+||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 3777776432 3559999999999999999974
No 31
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=40.76 E-value=23 Score=25.31 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERR 65 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsap 65 (311)
..|.+|++ .+...+|..|++..|.. .+. .||.. .++..+.|..|...+
T Consensus 10 ~~C~vC~~--------~g~ll~Cd~C~~~fH~~-----Cl~-ppl~~-~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 10 EFCRVCKD--------GGELLCCDTCPSSYHIH-----CLN-PPLPE-IPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCTTTCC--------CSSCBCCSSSCCCBCSS-----SSS-SCCSS-CCSSCCCCTTTTTTC
T ss_pred CcCCCCCC--------CCCEEEcCCCCHHHccc-----ccC-CCcCc-CCCCccCChhhcCch
Confidence 46888885 35788899999998873 111 12221 234568888887653
No 32
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.36 E-value=7 Score=28.67 Aligned_cols=31 Identities=29% Similarity=0.743 Sum_probs=23.5
Q ss_pred ccccccccc---eEEeecCCccccccccCcCccC
Q 021533 57 ICDVCQERR---AFLFCQQDRAILCRDCDIPIHT 87 (311)
Q Consensus 57 LCD~Cqsap---A~vfC~aDsA~LC~~CD~~iHs 87 (311)
.|-.|+..- ..+.|..|...+|.+||.-+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 366666543 2466999999999999999985
No 33
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.10 E-value=33 Score=27.57 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=40.9
Q ss_pred CCCcccCCCCcEEEeccCccccch--hhccccccCccccCCceeecccCCCCCCCCcccccc----ccceEEeecCCccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCD--TCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQ----ERRAFLFCQQDRAI 76 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~--~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cq----sapA~vfC~aDsA~ 76 (311)
..|.+|++ ..+..+|. .|++-.|.. =| . |.. .|+..|.|..|. .+++.++|..|...
T Consensus 16 ~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~-Cl-~------L~~-~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~s 78 (107)
T 4gne_A 16 DYCFQCGD--------GGELVMCDKKDCPKAYHLL-CL-N------LTQ-PPYGKWECPWHQCDECSSAAVSFCEFCPHS 78 (107)
T ss_dssp SSCTTTCC--------CSEEEECCSTTCCCEECTG-GG-T------CSS-CCSSCCCCGGGBCTTTCSBCCEECSSSSCE
T ss_pred CCCCcCCC--------CCcEeEECCCCCCcccccc-cC-c------CCc-CCCCCEECCCCCCCcCCCCCCcCcCCCCcc
Confidence 35778874 24567788 799877763 22 1 222 234457766543 23456889999988
Q ss_pred cccccCcC
Q 021533 77 LCRDCDIP 84 (311)
Q Consensus 77 LC~~CD~~ 84 (311)
+|..|...
T Consensus 79 fC~~c~~g 86 (107)
T 4gne_A 79 FCKDHEKG 86 (107)
T ss_dssp ECTTTCTT
T ss_pred hhhhccCC
Confidence 88887643
No 34
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=37.99 E-value=19 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.657 Sum_probs=28.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSL 47 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl 47 (311)
..|..-+ .+-.+||..|...+|..|-..-|. .|.-++|
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l 56 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTV 56 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecH
Confidence 3576664 678899999999999999765554 4555554
No 35
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.38 E-value=15 Score=26.70 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=30.5
Q ss_pred Cccccccccc---eEEeecCCcc-ccccccCcCccCCCcccCCcccee
Q 021533 56 PICDVCQERR---AFLFCQQDRA-ILCRDCDIPIHTANEHTQKHNRFL 99 (311)
Q Consensus 56 ~LCD~Cqsap---A~vfC~aDsA-~LC~~CD~~iHsAN~la~rH~Rvp 99 (311)
..|+.|...+ ..+.|..|.- -||..|-..+...+.+...|.-+-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~ 59 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEE
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEE
Confidence 3699998765 4478888865 599999887765555555565443
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.49 E-value=12 Score=27.13 Aligned_cols=64 Identities=20% Similarity=0.468 Sum_probs=35.6
Q ss_pred EEEeccCc----cccchhhccccccCccccCCceeecccCCCCCCCCccccccccce--EEeecCCccccccccCcC
Q 021533 14 SVFCTADE----AALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRA--FLFCQQDRAILCRDCDIP 84 (311)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA--~vfC~aDsA~LC~~CD~~ 84 (311)
.+||..|= +..|..|+..|.. ..+...-... |+ .=-.|..|...-. ..|-......+|..|...
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~w---H~---~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~ 72 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTY---HP---DCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEE---CT---TTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCcee---Cc---cCCccccCCCCCCCCCEEEeCCCCEEChhhhcc
Confidence 46788873 4589999999883 3332222222 11 1135777766532 334344444577777544
No 37
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=35.21 E-value=20 Score=24.26 Aligned_cols=49 Identities=31% Similarity=0.575 Sum_probs=30.4
Q ss_pred CCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCcccccccc
Q 021533 4 QCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsa 64 (311)
.|.+|++.. ..+...+|..|++..|.. =|- .+|.. .|+..+.|..|..+
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~-Cl~-----p~l~~-~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLF-CLR-----PALYE-VPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHH-HHC-----TTCCS-CCSSCCSCTTTSCC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcc-cCC-----CCcCC-CCCCcEECcCcccc
Confidence 588898653 245678899999988873 110 12221 23446888888653
No 38
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=34.38 E-value=28 Score=26.32 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=20.5
Q ss_pred CccccchhhccccccCccccCCceeecccCCCCCCC-Cccccccc
Q 021533 20 DEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHF-PICDVCQE 63 (311)
Q Consensus 20 D~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~-~LCD~Cqs 63 (311)
+...+|..||+..|-. =| ..||.. .|+.. ++|..|..
T Consensus 39 ~~ll~CD~C~~~yH~~-Cl-----~PpL~~-~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 39 DKQLMCDECDMAFHIY-CL-----DPPLSS-VPSEDEWYCPECRN 76 (77)
T ss_dssp GGEEECTTTCCEEETT-TS-----SSCCSS-CCSSSCCCCTTTC-
T ss_pred cceeEeCCCCCccCcc-cC-----CCcccC-CCCCCceECcCccc
Confidence 4567888888888862 11 122222 23334 78887753
No 39
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.37 E-value=27 Score=27.18 Aligned_cols=57 Identities=25% Similarity=0.580 Sum_probs=32.2
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccccceEEeecCCcc--ccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRA--ILC 78 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA--~LC 78 (311)
|...|-.|+..... ...-..|..|+..+- . ...|..|+..-.. |.+|.| .+|
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~-------------~-------~afCPeCgq~Le~--lkACGA~~yFC 54 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFS-------------L-------QALCPDCRQPLQV--LKACGAVDYFC 54 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEE-------------E-------EEECSSSCSCCCE--EEETTEEEECC
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCC-------------C-------cccCcchhhHHHH--HHhcCCcCeee
Confidence 77888888865442 233445777765321 1 1257777664443 445543 566
Q ss_pred cccCc
Q 021533 79 RDCDI 83 (311)
Q Consensus 79 ~~CD~ 83 (311)
..|-.
T Consensus 55 ~~C~~ 59 (81)
T 2jrp_A 55 QNGHG 59 (81)
T ss_dssp TTTTC
T ss_pred ccCCC
Confidence 66643
No 40
>1gea_A Pituitary adenylate cyclase activating polypeptide; beta coil, consecutive beta turns, type-II beta turn, type- I beta turn, helix, neuropeptide; HET: LYN; NMR {Synthetic} SCOP: j.81.1.1
Probab=34.13 E-value=9.8 Score=23.88 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=13.1
Q ss_pred cccccHHHHHhhCCCccccccCCC
Q 021533 181 VSASSISEYLEMLPGWHVEDLLDS 204 (311)
Q Consensus 181 ~~~ssiseyl~~~pgw~ved~l~~ 204 (311)
.-|+++|.||+++ ++.|||..
T Consensus 5 ~FTsdySry~~~~---~~q~fl~~ 25 (26)
T 1gea_A 5 IFTDSYSRYRKQM---AVKXXXXX 25 (26)
T ss_dssp SSSSHHHHHHHHH---HHCC----
T ss_pred cchhHHHHHHHHH---HHHhcccc
Confidence 4569999999443 78888753
No 41
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.81 E-value=26 Score=29.68 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCcccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsa 64 (311)
..|.+|++. ++..+|..|++..|.. .|. .+|.. .++..|.|..|...
T Consensus 5 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----C~~-p~l~~-~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNG--------GELLCCEKCPKVFHLS-----CHV-PTLTN-FPSGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCC--------SSCEECSSSSCEECTT-----TSS-SCCSS-CCSSCCCCTTTSCS
T ss_pred CccccCCCC--------CeeeecCCCCcccCcc-----ccC-CCCCC-CCCCCEECccccCc
Confidence 368999854 4577788899888863 111 12221 23455888888764
No 42
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=32.28 E-value=19 Score=36.19 Aligned_cols=28 Identities=21% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCcccCCCCcEEEeccCccccchhhcccccc
Q 021533 4 QCDVCNKSEASVFCTADEAALCDTCDHRVHH 34 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (311)
.|+.|+.- ||=..-.++-|..|...+|.
T Consensus 50 ~C~~C~~~---i~g~~~qg~~C~~C~~~~H~ 77 (674)
T 3pfq_A 50 FCSHCTDF---IWGFGKQGFQCQVCSFVVHK 77 (674)
T ss_dssp -------------------------------
T ss_pred cccccccc---ccccCCceeECCCCCCCcCh
Confidence 58888863 22224456677777777776
No 43
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.19 E-value=17 Score=38.03 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=53.0
Q ss_pred CCCcccCCC--CcEEEeccCccccchhhcccc--ccCcc-ccCCceeecccCCCC--CCCCccccccccceEE----eec
Q 021533 3 IQCDVCNKS--EASVFCTADEAALCDTCDHRV--HHANK-LASKHHRFSLLHPSS--KHFPICDVCQERRAFL----FCQ 71 (311)
Q Consensus 3 ~~Cd~C~~a--~A~vyC~aD~A~LC~~CD~~v--HsAN~-La~rH~Rvpl~~ps~--k~~~LCD~CqsapA~v----fC~ 71 (311)
+.|.+|+-. ..+|.|..+.-.+|..=+..- |=-|- +.+||.-|-|+.-++ ....-|-.|+.+...+ -.+
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~~ 91 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAK 91 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC--
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeecc
Confidence 579999865 689999999999998554332 22233 356899898865444 4456799999886654 223
Q ss_pred CCc--cccccc-cCc
Q 021533 72 QDR--AILCRD-CDI 83 (311)
Q Consensus 72 aDs--A~LC~~-CD~ 83 (311)
.+. +.||+. |..
T Consensus 92 ~~~~~~~~cr~~c~~ 106 (802)
T 2xzl_A 92 SEAVVVLLCRIPCAQ 106 (802)
T ss_dssp ----CEEEETTTTTT
T ss_pred CCceEEEEeCCcccc
Confidence 344 467884 844
No 44
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.52 E-value=29 Score=26.78 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=30.6
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQE 63 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqs 63 (311)
..|.+|+.... .+...+|..|++..|-. .+ ..||.. .|+..|.|..|..
T Consensus 17 ~~C~vC~~~~~-----~~~ll~CD~C~~~~H~~-----Cl-~Ppl~~-~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 17 YICQVCSRGDE-----DDKLLFCDGCDDNYHIF-----CL-LPPLPE-IPRGIWRCPKCIL 65 (92)
T ss_dssp CCCSSSCCSGG-----GGGCEECTTTCCEECSS-----SS-SSCCSS-CCSSCCCCHHHHH
T ss_pred CCCccCCCcCC-----CCCEEEcCCCCchhccc-----cC-CCCccc-CCCCCcCCccCcC
Confidence 36888886532 35688899999988873 11 122322 2345678888865
No 45
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=29.22 E-value=14 Score=27.86 Aligned_cols=31 Identities=26% Similarity=0.642 Sum_probs=26.8
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhcccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRV 32 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~v 32 (311)
|++.|..|.. .-+||=.+-...+|..|...+
T Consensus 6 m~VKCp~C~n-iq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEH-EQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCC-EEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCC-ceEEEecCceEEEcccCCCEE
Confidence 7889999994 889999999999999997654
No 46
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=28.26 E-value=20 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.704 Sum_probs=26.4
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhcccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRV 32 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~v 32 (311)
|++.|..|+. .-+||=++-...+|..|...+
T Consensus 33 m~VkCp~C~~-~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 33 LDVKCPGCLN-ITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp EEEECTTSCS-CEEEESBCSSCCCCSSSCCCC
T ss_pred EEEECCCCCC-eeEEEecCCeEEEccccCCEE
Confidence 6788999994 889999999999999996554
No 47
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.73 E-value=29 Score=25.44 Aligned_cols=57 Identities=16% Similarity=0.358 Sum_probs=30.5
Q ss_pred CccccchhhccccccCccccCCceeecccCCCCCCCCccccccccceEEeecCCccccccccC
Q 021533 20 DEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQDRAILCRDCD 82 (311)
Q Consensus 20 D~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~aDsA~LC~~CD 82 (311)
..+..|..|+..|.....+...-... |+ .=-.|..|...-..-|...+..++|..|-
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~w---H~---~CF~C~~C~~~L~~~~~~~~g~~yC~~~y 69 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQW---HV---SCFKCQTCSVILTGEYISKDGVPYCESDY 69 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEE---CT---TTCBCSSSCCBCSSCCEEETTEEECTTHH
T ss_pred CCCCCCcCcCCeeCCCeEEEECCccc---cc---ccCCcCcCCCCcCCCeEEECCEEECHHHH
Confidence 45678999988887544433322222 11 11356666654333344555666666654
No 48
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=26.64 E-value=16 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.747 Sum_probs=25.8
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhcccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRV 32 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~v 32 (311)
|++.|..|+. .-+||=++-...+|..|..-+
T Consensus 31 m~VkCp~C~n-~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 31 MDVKCAQCQN-IQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp EEEECSSSCC-EEEEETTCSSCEECSSSCCEE
T ss_pred EEeECCCCCC-eeEEEecCccEEEccCCCCEE
Confidence 7788999994 889999999999999996543
No 49
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.52 E-value=38 Score=23.52 Aligned_cols=46 Identities=35% Similarity=0.588 Sum_probs=29.4
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQE 63 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqs 63 (311)
..|.+|++. +...+|..|++..|-. .+. .||.. .++..+.|..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~-----Cl~-ppl~~-~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD-----CLD-PPLKT-IPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS-----SSS-SCCCS-CCCSSCCCHHHHC
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc-----cCC-CCcCC-CCCCceEChhhhC
Confidence 468999874 4678888999888873 111 12221 2345688888864
No 50
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.50 E-value=17 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.564 Sum_probs=26.6
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhccccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVH 33 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH 33 (311)
|+..|..|.. .-+||=++-...+|..|...+=
T Consensus 14 m~VkCp~C~~-~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 14 LRVKCIDCGN-EQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EEEECSSSCC-EEEEESSCSSCEECSSSCCEEE
T ss_pred EEEECCCCCC-eeEEEecCCeEEEccCcCCEEe
Confidence 6788999995 7888999999999999976543
No 51
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.85 E-value=53 Score=25.50 Aligned_cols=67 Identities=25% Similarity=0.611 Sum_probs=37.4
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccccceEEeecC-------Ccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRAFLFCQQ-------DRA 75 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA~vfC~a-------DsA 75 (311)
..|.+|++..-. +.-.+|..|.+..|..= +.- ++ .+.+...+.|..|. +|.. ...
T Consensus 8 ~~C~~C~~~g~~-----~~ll~C~~C~~~~H~~C--l~~----~~-~~~~~~~W~C~~C~------~C~~C~~~~~~~~l 69 (111)
T 2ysm_A 8 ANCAVCDSPGDL-----LDQFFCTTCGQHYHGMC--LDI----AV-TPLKRAGWQCPECK------VCQNCKQSGEDSKM 69 (111)
T ss_dssp SCBTTTCCCCCT-----TTSEECSSSCCEECTTT--TTC----CC-CTTTSTTCCCTTTC------CCTTTCCCSCCTTE
T ss_pred CCCcCCCCCCCC-----cCCeECCCCCCCcChHH--hCC----cc-ccccccCccCCcCC------cccccCccCCCCCe
Confidence 468888864211 23367889998888731 110 00 11223456666664 2322 236
Q ss_pred ccccccCcCccC
Q 021533 76 ILCRDCDIPIHT 87 (311)
Q Consensus 76 ~LC~~CD~~iHs 87 (311)
.+|..|+..-|-
T Consensus 70 l~Cd~C~~~yH~ 81 (111)
T 2ysm_A 70 LVCDTCDKGYHT 81 (111)
T ss_dssp EECSSSCCEEEG
T ss_pred eECCCCCcHHhH
Confidence 788888877664
No 52
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.99 E-value=21 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=26.2
Q ss_pred CCCCCcccCCCCcEEEeccCccccchhhccccc
Q 021533 1 MKIQCDVCNKSEASVFCTADEAALCDTCDHRVH 33 (311)
Q Consensus 1 Mk~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vH 33 (311)
|++.|-.|.. .-+||=++-...+|..|..-+=
T Consensus 35 m~VkCp~C~~-~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 35 MDVKCQGCFN-ITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp EEEECTTTCC-EEEEETTCSSCCCCSSSCCCCS
T ss_pred eEEECCCCCC-eeEEEecCCcEEEccCCCCEee
Confidence 6788999984 8889999999999999965543
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.65 E-value=39 Score=29.20 Aligned_cols=47 Identities=26% Similarity=0.500 Sum_probs=29.0
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCcccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsa 64 (311)
..|.+|+... +..+|..|++..|.. .|. .||.. .|+..|.|..|...
T Consensus 8 ~~C~~C~~~g--------~ll~Cd~C~~~~H~~-----Cl~-p~l~~-~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG--------DLLCCEKCPKVFHLT-----CHV-PTLLS-FPSGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE--------EEEECSSSSCEECTT-----TSS-SCCSS-CCSSCCCCTTTSCS
T ss_pred CCCCCCCCCC--------ceEEcCCCCCccCCc-----cCC-CCCCC-CCCCCEEeCceeCc
Confidence 4688898642 466788899888863 111 12221 23456888888764
No 54
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=23.63 E-value=25 Score=24.67 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=23.0
Q ss_pred CCCCcccCCC-CcEEEeccCccc-cchhhcccc
Q 021533 2 KIQCDVCNKS-EASVFCTADEAA-LCDTCDHRV 32 (311)
Q Consensus 2 k~~Cd~C~~a-~A~vyC~aD~A~-LC~~CD~~v 32 (311)
...|+.|.+. ...+.|..+..+ ||..|=..-
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhCC
Confidence 4579999865 256889888665 999996553
No 55
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=23.36 E-value=54 Score=28.21 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=29.6
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCcccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQER 64 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsa 64 (311)
..|.+|++. ++-.+|..|++..|.. .|. -+|.. .++..|.|..|...
T Consensus 3 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~-----Cl~-p~l~~-~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP--------GDLVMCNQCEFCFHLD-----CHL-PALQD-VPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC--------SSCCCCTTTCCBCCST-----TST-TCCSS-CCCTTCCTTTTSCS
T ss_pred CcCccCCCC--------CceeECCCCCchhccc-----cCC-CCccc-CCCCCCCCcCccCC
Confidence 468899854 4577899999998873 111 12221 13445888888764
No 56
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.30 E-value=33 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.726 Sum_probs=22.2
Q ss_pred CCcccCCCCcEEEeccCccccch-hh
Q 021533 4 QCDVCNKSEASVFCTADEAALCD-TC 28 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~-~C 28 (311)
+|++|+. ++...|..+.+..|. .|
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHH
Confidence 5999999 999999999999998 66
No 57
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=22.80 E-value=32 Score=24.39 Aligned_cols=55 Identities=20% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccC--CCCCCCCccccccccce
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLH--PSSKHFPICDVCQERRA 66 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~--ps~k~~~LCD~CqsapA 66 (311)
..|.+|+..... ..+...+|..|+...|.. -|. .||.. ..++..|+|..|....+
T Consensus 7 ~~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~~-----C~~-p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 7 GVCTICQEEYSE---APNEMVICDKCGQGYHQL-----CHT-PHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCBSSSCCCCCB---TTBCEEECSSSCCEEETT-----TSS-SCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCC---CCCCEEECCCCChHHHhh-----hCC-CcccccccCCCCCEECCCCcCccc
Confidence 578999864211 234677889999999873 111 11211 01345689998876543
No 58
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.50 E-value=1.7e+02 Score=22.08 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=23.9
Q ss_pred CCCCcccCCCC---cEEEeccCcc----ccchhhccccc
Q 021533 2 KIQCDVCNKSE---ASVFCTADEA----ALCDTCDHRVH 33 (311)
Q Consensus 2 k~~Cd~C~~a~---A~vyC~aD~A----~LC~~CD~~vH 33 (311)
...||.|+..+ -.+.|..+.- -||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 45799999765 4578988754 69999976543
No 59
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.25 E-value=49 Score=23.66 Aligned_cols=62 Identities=16% Similarity=0.373 Sum_probs=34.0
Q ss_pred EEeccCc----cccchhhccccccCccccCCceeecccCCCCCCCCccccccccce--EEee-cCCccccccccCc
Q 021533 15 VFCTADE----AALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERRA--FLFC-QQDRAILCRDCDI 83 (311)
Q Consensus 15 vyC~aD~----A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~CqsapA--~vfC-~aDsA~LC~~CD~ 83 (311)
.||..|- +..|..|+..|-. ..+...-... |+ .--.|..|...-. ..|. ..+..++|..|-.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~-~~~~a~~~~~---H~---~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~ 72 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMTG-PFMVAGEFKY---HP---ECFACMSCKVIIEDGDAYALVQHATLYCGKCHN 72 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCCS-CCBCCTTCCB---CT---TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHH
T ss_pred ccchhHHhhhcCCcCccCCCCcCc-eEEEECCcee---cc---ccCCccCCCCccCCCCcEEEeeCCEEECHHHHH
Confidence 4666663 4569999998883 3322221111 11 1135777776542 3444 3566777777643
No 60
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.87 E-value=47 Score=26.31 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=28.4
Q ss_pred CCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccc
Q 021533 4 QCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQE 63 (311)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqs 63 (311)
.|.+|+... ..+...+|..||+..|-. -..-||.. .|+..|.|..|..
T Consensus 60 ~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~------Cl~ppl~~-~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSE-----NDDQLLFCDDCDRGYHMY------CLNPPVAE-PPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCT-----TTTTEEECSSSCCEEETT------TSSSCCSS-CCSSCCCCHHHHH
T ss_pred ccCcccccC-----CCCceEEcCCCCcccccc------ccCCCccC-CCCCCeECccccc
Confidence 366666532 235678899999988873 11123332 2345688888754
No 61
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.73 E-value=72 Score=23.91 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=11.4
Q ss_pred cCccccchhhcccccc
Q 021533 19 ADEAALCDTCDHRVHH 34 (311)
Q Consensus 19 aD~A~LC~~CD~~vHs 34 (311)
.+...+|..|++..|-
T Consensus 38 ~~~ll~CD~C~~~yH~ 53 (77)
T 2e6s_A 38 PNMQLLCDECNVAYHI 53 (77)
T ss_dssp STTEEECSSSCCEEET
T ss_pred CCCEEEcCCCCccccc
Confidence 3456678888887776
No 62
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=20.73 E-value=36 Score=22.89 Aligned_cols=25 Identities=32% Similarity=0.836 Sum_probs=20.7
Q ss_pred CCCcccCCCCcEEEeccCccccchhhcccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHH 34 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (311)
..|+.|++ .++ .++.|..|...+|.
T Consensus 15 t~C~~C~~---~l~----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 15 AFCDICQK---FLL----NGFRCQTCGYKFHE 39 (52)
T ss_dssp EECTTSSS---EEC----SEEECTTTTCCBCS
T ss_pred cCCCCccc---ccc----cCCEeCCCCCeECh
Confidence 46999987 344 79999999999997
No 63
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.65 E-value=35 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=21.0
Q ss_pred CccccccccceEEeecCCcccccc
Q 021533 56 PICDVCQERRAFLFCQQDRAILCR 79 (311)
Q Consensus 56 ~LCD~CqsapA~vfC~aDsA~LC~ 79 (311)
.+|.+|+. ++.+.|..|.+..|.
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESS
T ss_pred CccCcCcC-CCeeeCCCCCCCeeC
Confidence 47999999 999999999999885
No 64
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.33 E-value=46 Score=23.92 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=30.3
Q ss_pred CCCcccCCCCcEEEeccCccccchhhccccccCccccCCceeecccCCCCCCCCccccccccc
Q 021533 3 IQCDVCNKSEASVFCTADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKHFPICDVCQERR 65 (311)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~~~LCD~Cqsap 65 (311)
..|.+|+.. ....+|..|+...|-. .+. .||.. .++..|.|..|....
T Consensus 9 ~~C~vC~~~--------g~ll~CD~C~~~fH~~-----Cl~-ppl~~-~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECAVCRDG--------GELICCDGCPRAFHLA-----CLS-PPLRE-IPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSBSSSSCC--------SSCEECSSCCCEECTT-----TSS-SCCSS-CCSSCCCCHHHHHTC
T ss_pred CCCccCCCC--------CCEEEcCCCChhhccc-----ccC-CCcCc-CCCCCeECccccCcc
Confidence 468999864 4677888999988863 111 12222 234568888887543
No 65
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.28 E-value=76 Score=23.23 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=21.7
Q ss_pred cCccccchhhccccccCccccCCceeecccCCCCCC-CCccccccc
Q 021533 19 ADEAALCDTCDHRVHHANKLASKHHRFSLLHPSSKH-FPICDVCQE 63 (311)
Q Consensus 19 aD~A~LC~~CD~~vHsAN~La~rH~Rvpl~~ps~k~-~~LCD~Cqs 63 (311)
.+...+|..|++..|-. =| .-||.. .|+. .+.|..|..
T Consensus 30 ~~~ll~CD~C~~~yH~~-Cl-----~Ppl~~-~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIY-CL-----DPPLSS-VPSEDEWYCPECRN 68 (70)
T ss_dssp GGGEEECTTTCCEEEGG-GS-----SSCCSS-CCSSSCCCCTTTSC
T ss_pred CCCEEEcCCCCCceecc-cC-----CCCcCC-CCCCCCcCCcCccC
Confidence 34677888899888863 11 112222 1233 578887764
Done!