BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021534
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI 75
P N + +VLVG+TG GKSAT NSILG+K F S + +TK CE + + K ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 76 DTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135
DTPG+FD+ SKEI++CI + G HA+LLV + R+++EE A + FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 136 KISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRT 195
+ + I++F YL RE P+ ++++ + +R +NK A++
Sbjct: 143 RARSFXILIF--TRKDDLGDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKAT-GAEQE 198
Query: 196 EQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE 229
Q +LL L+ V+ +N YT+ + +RAE
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXY---QRAE 229
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 127/238 (53%), Gaps = 17/238 (7%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
R L+LVGRTG GKSAT NSILG++ F S+ G++ VT+ C V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH-VEVVDTPDI 80
Query: 81 FDSSA---DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI 137
F S DP +E C ++ G HA+LLV + RF+ ++ A+ + +FG+ +
Sbjct: 81 FSSQVSKTDPG--CEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDV 137
Query: 138 SDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQ 197
+M++VF Y+ + L+E++ C R FDN+ ++ Q
Sbjct: 138 LKWMVIVF--TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRAT-GREQEAQ 194
Query: 198 VGKLLSLVNSVIVQNGGQPYTDEIFAELKRAELKEQMKKSY-DDQLKRITEMFESKLK 254
V +LL +V +++++ G Y++E++ EL + ++ + +++L+R+ E ++++
Sbjct: 195 VVQLLGMVEGLVLEHKGAHYSNEVY------ELAQVLRWAGPEERLRRVAERVAARVQ 246
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 11 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ 70
+K S E ++LVG+TG GKSA NSIL K+AF SK GS +TKTC + +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILE 130
+V +IDTP +F E + KE+ +C ++ G H +LLV + R++ ++ A ++
Sbjct: 73 IV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 131 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 190
+FG+ + IV+F Y+ K L +++ C R F+N+ +
Sbjct: 131 EIFGEDAMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 191 AAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE 229
+ + +QV +L+ + ++++ G YT+ +++ ++R++
Sbjct: 188 GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSK 226
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 114/213 (53%), Gaps = 5/213 (2%)
Query: 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVID 76
S E ++LVG+TG GKSA NSIL K+AF SK GS +TKTC + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 77 TPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK 136
TP +F E + KE+ +C ++ G H +LLV + R++ ++ A ++ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 137 ISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTE 196
+ IV+F Y+ K L +++ C R F+N+ + + + +
Sbjct: 120 AMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 176
Query: 197 QVGKLLSLVNSVIVQNGGQPYTDEIFAELKRAE 229
QV +L+ + ++++ G YT+ +++ ++R++
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSK 209
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 113/210 (53%), Gaps = 5/210 (2%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79
E ++LVG+TG GKSA NSIL K+AF SK GS +TKTC + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISD 139
+F E + KE+ +C ++ G H +LLV + R++ ++ A ++ +FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 140 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVG 199
+ IV+F Y+ K L +++ C R F+N+ + + + +QV
Sbjct: 120 HTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVK 176
Query: 200 KLLSLVNSVIVQNGGQPYTDEIFAELKRAE 229
+L+ + ++++ G YT+ +++ ++R++
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGLYSLIQRSK 206
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 5/218 (2%)
Query: 11 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ 70
+K S E ++LVG+TG GKSA NSIL K+AF SK GS +TKTC + +
Sbjct: 13 AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILE 130
+V +IDTP F E + KE+ +C ++ G H +LLV + R++ ++ A ++
Sbjct: 73 IV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 131 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 190
+FG+ + IV+F Y K L +++ C R F+N+ +
Sbjct: 131 EIFGEDAXGHTIVLF--THKEDLNGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 191 AAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELKRA 228
+ + +QV +L + ++ + G YT+ +++ ++R+
Sbjct: 188 GSNQDDQVKELXDCIEDLLXEKNGDHYTNGLYSLIQRS 225
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NSI+G++ S + + R+ +AG +N+IDTPGL +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLIE 99
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+++ G+ G GKS+T NSI+G++ S + + R+ +AG +N+IDTPGL +
Sbjct: 42 ILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLIE 99
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NS++G++ + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 83 S 83
+
Sbjct: 97 A 97
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NS++G++ + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 83 S 83
+
Sbjct: 97 A 97
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NS++G++ + + + RTM G +N+IDTPGL +
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 96
Query: 83 S 83
+
Sbjct: 97 A 97
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
++++G+ G GKS+T NS++G++ + + + RTM G +N+IDTPGL +
Sbjct: 38 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVE 95
Query: 83 S 83
+
Sbjct: 96 A 96
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPG 79
+ +VG+ GKS N++LG K A S +T + R +L G Q+V +DTPG
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKV----APISPRPQTTRKRLRGILTEGRRQIV-FVDTPG 64
Query: 80 LFDS-SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135
L A EF+ +E+ + + ++AV+ V +R+ + E+ L+ L GK
Sbjct: 65 LHKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK 117
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI--DTPG 79
N+ + G TG+GKS+ N++ G A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 80 LFDSSADPE 88
+ ++ P+
Sbjct: 130 IGSTNFPPD 138
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI--DTPG 79
N+ + G TG+GKS+ N++ G A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 80 LFDSSADPE 88
+ ++ P+
Sbjct: 130 IGSTNFPPD 138
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI--DTPG 79
N+ + G TG+GKS+ N++ G A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 80 LFDSSADPE 88
+ ++ P+
Sbjct: 130 IGSTNFPPD 138
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVI--DTPG 79
N+ + G TG+GKS+ N++ G A +GV + M+R K + NV+ D PG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPG 129
Query: 80 LFDSSADPE 88
+ ++ P+
Sbjct: 130 IGSTNFPPD 138
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 12/71 (16%)
Query: 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSG-----VTKTCEMQRT--MLKAGQV--- 71
N+++VG++G GKS N++ K+ +S+ SS + KT E++ +++ G V
Sbjct: 4 NIMVVGQSGLGKSTLVNTLF--KSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMK 61
Query: 72 VNVIDTPGLFD 82
+ VIDTPG D
Sbjct: 62 LTVIDTPGFGD 72
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+++VGR GKS N ++ KK + + GVT+ +Q T+ G+ ++DT G+FD
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDP-VQDTVEWYGKTFKLVDTCGVFD 61
Query: 83 SSAD 86
+ D
Sbjct: 62 NPQD 65
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK--AGSSGVTKTCEMQRT--MLKAGQV- 71
S E L++VG +G GKS NS+ + + S + KT +++++ ++K G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 72 --VNVIDTPGLFDS 83
+ ++DTPG D+
Sbjct: 65 LLLTIVDTPGFGDA 78
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK--AGSSGVTKTCEMQ--RTMLKAGQV---V 72
E L++VG +G GKS NS+ + + S + KT +++ + ++K G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 73 NVIDTPGLFDS 83
++DTPG D+
Sbjct: 63 TIVDTPGFGDA 73
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK--AGSSGVTKTCEMQRT--MLKAGQV---V 72
E L++VG +G GKS NS+ + + S + KT +++++ ++K G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 73 NVIDTPGLFDS 83
++DTPG D+
Sbjct: 91 TIVDTPGFGDA 101
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 7 IDADSKPTSPS-NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM---- 61
+ DS +S S N +VL+G G GKS AN G M CE+
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMD--------SDCEVLGED 74
Query: 62 --QRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS 119
+RT++ G+ +I ++++ + E++ C+ + A L+V+SI +R S
Sbjct: 75 TYERTLMVDGESATII-LLDMWENKGENEWLHDH---CMQVGD----AYLIVYSITDRAS 126
Query: 120 KEEGAAIHI 128
E+ + + I
Sbjct: 127 FEKASELRI 135
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 218 TDEIFAELKRAEL-----KEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAEEQ 268
T+++ +ELK KE++ + DQ K ITE E KL E T +LE L +E+
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTM-LKAGQVVNVIDTPG 79
R +V+ GR GKS+ N+++G+ +S T T + ++M L V ++DTPG
Sbjct: 35 RYIVVAGRRNVGKSSFMNALVGQN--VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPG 92
Query: 80 LFD 82
L D
Sbjct: 93 LDD 95
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 6 VIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTM 65
VI A P G + L GR+ GKS+ NS++ +K + G T+T
Sbjct: 9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL----NF 64
Query: 66 LKAGQVVNVIDTPG 79
++ +D PG
Sbjct: 65 YIINDELHFVDVPG 78
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----GQVVNVIDT 77
+V+ GR GKS+ N++ G++A + VT R +L+ G +++IDT
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAI-------VTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 78 PGLFDSSADPEFVSKE 93
GL ++S + E + E
Sbjct: 63 AGLREASDEVERIGIE 78
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----GQVVNVIDT 77
+V+ GR GKS+ N++ G++A + VT R +L+ G +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAI-------VTDIAGTTRDVLREHIHIDGXPLHIIDT 59
Query: 78 PGLFDSSADPEFVSKE 93
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80
+++VG GKS N + GK+A S G+TK +Q L+ G V ++DTPG+
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKG--IQWFSLENG--VKILDTPGI 154
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+VL+G G GKS AN G M T E RT++ G+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLMVDGESATII-LLDMWE 65
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI 128
+ + E++ C+ + A L+V+SI +R S E+ + + I
Sbjct: 66 NKGENEWLHDH---CMQVGD----AYLIVYSITDRASFEKASELRI 104
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----GQVVNVIDT 77
+V+ GR GKS+ N++ G++A + VT R +L+ G +++IDT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAI-------VTDIAGTTRDVLREHIHIDGMPLHIIDT 59
Query: 78 PGLFDSSADPEFVSKE 93
GL ++S + E + E
Sbjct: 60 AGLREASDEVERIGIE 75
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----------------SGVTK 57
T+P N RN+ + GK+ T +L K G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 58 TCEMQRTMLKA--GQV----VNVIDTPGLFDSSADPE 88
T T K GQ VNVIDTPG D + + E
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVE 103
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM------QRTMLKAGQV 71
N +VL+G G GKS AN G M CE+ +RT++ G+
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD--------SDCEVLGEDTYERTLMVDGES 55
Query: 72 VNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI 128
+I ++++ + E++ C+ + A L+V+SI +R S E+ + + I
Sbjct: 56 ATII-LLDMWENKGENEWLHDH---CMQVGD----AYLIVYSITDRASFEKASELRI 104
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 193 KRTEQVGKLLSLVNS----VIVQNGGQPYTDEIFAELKRAELKEQMKKSYDDQLKRITEM 248
KR V +L+ N+ ++ PY I L R +KK YD + +
Sbjct: 8 KRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKY-KC 66
Query: 249 FESKLKETTTRLEQQLAEEQAARLKAEQATQSAQTKSNDEIGKLKKDTAELREQPKNG 306
FE LK + + + + E + +AEQ + A+ ND G++ ++ + + P G
Sbjct: 67 FEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVG 124
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82
+VL+G G GKS AN G M T E RT++ G+ +I +++
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLMVDGESATII-LLDMWE 65
Query: 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI 128
+ + E++ ++ +G A L+V+SI +R S E+ + + I
Sbjct: 66 NKGENEWLHDHXMQ-VG------DAYLIVYSITDRASFEKASELRI 104
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKA----------------FMSKAGSSGVTKTCEMQRT 64
RN+V+ GK+ T IL FM + G+T T +
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 65 MLKAGQVVNVIDTPGLFDSSADPE 88
K ++ N+IDTPG D + + E
Sbjct: 73 FWKDHRI-NIIDTPGHVDFTIEVE 95
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 24 VLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83
+++G GKS N L KK G+T + + +K G+ + ++DTPG+
Sbjct: 124 LIIGIPNVGKSTLINR-LAKKNIAKTGDRPGITTSQQW----VKVGKELELLDTPGILWP 178
Query: 84 SADPEFVSKEIVKCIGMAKDGIHAV--LLVFSIR 115
+ E V + G KD I + + VF +R
Sbjct: 179 KFEDELVGLRLA-VTGAIKDSIINLQDVAVFGLR 211
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAG-------SSGVTKTCEMQRT--------M 65
R + LVG G+GK+ ++L K + G ++ T ++ RT +
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 66 LKAGQVVNVIDTPGLFD 82
L G V ++D PG D
Sbjct: 70 LFRGHRVFLLDAPGYGD 86
>pdb|1N73|C Chain C, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
pdb|1N73|F Chain F, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
Length = 330
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 225 LKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAE 266
L+ + EQ+ S+D Q++ ++EM+ ++ TRL+QQL +
Sbjct: 11 LEEVRILEQIGVSHDAQIQELSEMWRVN-QQFVTRLQQQLVD 51
>pdb|1LWU|C Chain C, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|F Chain F, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|I Chain I, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|L Chain L, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
Length = 323
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 225 LKRAELKEQMKKSYDDQLKRITEMFESKLKETTTRLEQQLAE 266
L+ + EQ+ S+D Q++ ++EM+ ++ TRL+QQL +
Sbjct: 11 LEEVRILEQIGVSHDAQIQELSEMWRVN-QQFVTRLQQQLVD 51
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSS--GVTKTCEMQRTMLKA---------- 68
RN+ ++ GK+ T IL + K G + G ++ M++ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 ---GQVVNVIDTPGLFDSSADPE 88
G VN+IDTPG D + + E
Sbjct: 71 AWEGHRVNIIDTPGHVDFTVEVE 93
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSS--GVTKTCEMQRTMLKA---------- 68
RN+ ++ GK+ T IL + K G + G ++ M++ +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 69 ---GQVVNVIDTPGLFDSSADPE 88
G VN+IDTPG D + + E
Sbjct: 71 AWEGHRVNIIDTPGHVDLTVEVE 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,922,157
Number of Sequences: 62578
Number of extensions: 286303
Number of successful extensions: 1050
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 77
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)