Query 021534
Match_columns 311
No_of_seqs 255 out of 2659
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 3.9E-35 8.4E-40 243.4 21.5 202 21-226 1-202 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 1.1E-34 2.3E-39 238.6 21.4 195 21-221 1-195 (196)
3 COG1159 Era GTPase [General fu 99.9 1.1E-26 2.5E-31 193.6 14.9 181 20-226 6-187 (298)
4 PF02421 FeoB_N: Ferrous iron 99.9 8.4E-26 1.8E-30 175.5 12.4 156 21-205 1-156 (156)
5 COG1160 Predicted GTPases [Gen 99.9 6.3E-23 1.4E-27 180.5 16.2 161 21-209 4-164 (444)
6 TIGR00436 era GTP-binding prot 99.9 4.9E-23 1.1E-27 177.4 14.8 177 22-226 2-179 (270)
7 TIGR00991 3a0901s02IAP34 GTP-b 99.9 1.9E-22 4.1E-27 172.2 17.4 191 14-210 32-244 (313)
8 COG0370 FeoB Fe2+ transport sy 99.9 3.8E-22 8.3E-27 183.2 19.7 177 20-226 3-179 (653)
9 COG5019 CDC3 Septin family pro 99.9 3.3E-21 7.2E-26 164.9 22.2 155 19-187 22-205 (373)
10 TIGR00993 3a0901s04IAP86 chlor 99.9 1.3E-21 2.7E-26 179.6 19.5 165 17-185 115-287 (763)
11 PRK00089 era GTPase Era; Revie 99.9 6.4E-22 1.4E-26 172.7 16.6 180 21-226 6-186 (292)
12 COG0218 Predicted GTPase [Gene 99.9 2.4E-21 5.3E-26 153.5 18.1 172 16-210 20-197 (200)
13 PRK15494 era GTPase Era; Provi 99.9 1.5E-21 3.1E-26 172.8 17.0 179 19-226 51-231 (339)
14 cd01853 Toc34_like Toc34-like 99.9 3E-21 6.5E-26 162.9 15.0 134 16-153 27-164 (249)
15 COG1160 Predicted GTPases [Gen 99.9 5.3E-21 1.2E-25 168.5 15.7 175 19-211 177-352 (444)
16 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-20 3.2E-25 150.7 16.7 163 21-209 1-167 (168)
17 cd04171 SelB SelB subfamily. 99.9 3.5E-20 7.6E-25 147.7 17.1 158 22-207 2-163 (164)
18 cd01898 Obg Obg subfamily. Th 99.9 2.7E-20 5.8E-25 149.4 15.3 164 22-208 2-169 (170)
19 TIGR03598 GTPase_YsxC ribosome 99.8 5.4E-20 1.2E-24 149.1 16.3 161 15-198 13-178 (179)
20 PRK12298 obgE GTPase CgtA; Rev 99.8 8.6E-20 1.9E-24 163.5 19.1 182 22-226 161-348 (390)
21 TIGR03156 GTP_HflX GTP-binding 99.8 5.4E-20 1.2E-24 163.1 17.1 162 19-208 188-350 (351)
22 PRK00454 engB GTP-binding prot 99.8 2E-19 4.2E-24 147.9 19.3 173 16-211 20-195 (196)
23 PF01926 MMR_HSR1: 50S ribosom 99.8 7.9E-20 1.7E-24 137.3 15.3 116 22-147 1-116 (116)
24 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-19 2.8E-24 145.6 16.7 171 20-208 2-173 (174)
25 cd01894 EngA1 EngA1 subfamily. 99.8 6.5E-20 1.4E-24 145.0 14.6 155 24-208 1-156 (157)
26 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.5E-24 165.3 20.2 175 18-211 170-345 (429)
27 PRK00093 GTP-binding protein D 99.8 2.9E-19 6.4E-24 164.5 20.5 174 18-211 171-345 (435)
28 COG1084 Predicted GTPase [Gene 99.8 7.8E-20 1.7E-24 154.2 15.0 132 12-153 160-295 (346)
29 COG0486 ThdF Predicted GTPase 99.8 5.7E-19 1.2E-23 156.1 21.2 164 17-211 214-377 (454)
30 PRK09554 feoB ferrous iron tra 99.8 7.8E-19 1.7E-23 169.2 24.0 164 20-210 3-168 (772)
31 PRK12299 obgE GTPase CgtA; Rev 99.8 2.8E-19 6.1E-24 157.2 19.0 170 21-211 159-329 (335)
32 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.8E-19 3.9E-24 142.4 16.0 155 21-209 2-156 (157)
33 cd01878 HflX HflX subfamily. 99.8 1.8E-19 4E-24 149.1 16.7 164 18-208 39-203 (204)
34 KOG2655 Septin family protein 99.8 6.6E-19 1.4E-23 152.2 19.7 155 20-188 21-201 (366)
35 cd04119 RJL RJL (RabJ-Like) su 99.8 2.9E-19 6.3E-24 142.9 16.4 161 21-209 1-166 (168)
36 cd04163 Era Era subfamily. Er 99.8 2.2E-19 4.8E-24 143.1 15.3 164 20-208 3-167 (168)
37 PRK03003 GTP-binding protein D 99.8 7E-19 1.5E-23 162.9 20.3 174 19-213 210-385 (472)
38 cd01850 CDC_Septin CDC/Septin. 99.8 5.3E-19 1.1E-23 152.0 17.7 154 20-187 4-185 (276)
39 cd01861 Rab6 Rab6 subfamily. 99.8 6.5E-19 1.4E-23 140.1 17.0 157 21-208 1-160 (161)
40 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.3E-19 7.1E-24 142.7 15.2 160 21-209 1-165 (168)
41 TIGR03594 GTPase_EngA ribosome 99.8 4E-19 8.7E-24 163.4 17.2 160 22-211 1-161 (429)
42 cd04124 RabL2 RabL2 subfamily. 99.8 4.7E-19 1E-23 141.1 15.3 155 21-210 1-158 (161)
43 PRK03003 GTP-binding protein D 99.8 4.3E-19 9.3E-24 164.3 17.2 164 18-211 36-200 (472)
44 cd04120 Rab12 Rab12 subfamily. 99.8 8.6E-19 1.9E-23 144.1 17.1 160 21-211 1-164 (202)
45 cd01865 Rab3 Rab3 subfamily. 99.8 9.4E-19 2E-23 139.9 16.9 158 21-209 2-162 (165)
46 cd01867 Rab8_Rab10_Rab13_like 99.8 9.1E-19 2E-23 140.2 16.8 159 20-209 3-164 (167)
47 cd01866 Rab2 Rab2 subfamily. 99.8 9.4E-19 2E-23 140.3 16.7 159 20-209 4-165 (168)
48 cd00881 GTP_translation_factor 99.8 3.6E-19 7.8E-24 145.2 14.5 165 22-210 1-187 (189)
49 cd04122 Rab14 Rab14 subfamily. 99.8 1E-18 2.3E-23 139.8 16.7 158 21-209 3-163 (166)
50 cd01868 Rab11_like Rab11-like. 99.8 1.8E-18 4E-23 138.1 18.1 159 20-209 3-164 (165)
51 PF00009 GTP_EFTU: Elongation 99.8 1.7E-19 3.6E-24 147.3 12.3 161 19-210 2-187 (188)
52 cd04121 Rab40 Rab40 subfamily. 99.8 2.2E-18 4.8E-23 140.3 18.8 164 19-214 5-171 (189)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.5E-18 3.3E-23 138.7 17.6 158 21-209 3-163 (166)
54 cd04140 ARHI_like ARHI subfami 99.8 6.7E-19 1.5E-23 140.7 15.4 160 21-208 2-163 (165)
55 smart00175 RAB Rab subfamily o 99.8 1.9E-18 4.2E-23 137.7 18.0 159 21-210 1-162 (164)
56 cd01864 Rab19 Rab19 subfamily. 99.8 1.7E-18 3.6E-23 138.4 17.6 157 20-207 3-163 (165)
57 cd04109 Rab28 Rab28 subfamily. 99.8 1E-18 2.2E-23 145.7 16.8 163 21-211 1-167 (215)
58 PRK05291 trmE tRNA modificatio 99.8 3.9E-18 8.5E-23 156.3 22.2 158 19-211 214-371 (449)
59 TIGR02729 Obg_CgtA Obg family 99.8 9.3E-19 2E-23 153.9 17.2 167 21-209 158-328 (329)
60 PF00735 Septin: Septin; Inte 99.8 4.1E-19 8.9E-24 152.4 14.4 154 20-187 4-184 (281)
61 cd01860 Rab5_related Rab5-rela 99.8 1.3E-18 2.9E-23 138.5 16.4 159 21-209 2-162 (163)
62 cd04112 Rab26 Rab26 subfamily. 99.8 2.6E-18 5.6E-23 140.7 18.4 162 21-212 1-165 (191)
63 PRK04213 GTP-binding protein; 99.8 1.3E-18 2.8E-23 143.6 16.7 169 18-211 7-193 (201)
64 cd01879 FeoB Ferrous iron tran 99.8 7.1E-19 1.5E-23 139.3 14.1 156 25-209 1-156 (158)
65 cd04113 Rab4 Rab4 subfamily. 99.8 1.3E-18 2.9E-23 138.3 15.7 156 21-207 1-159 (161)
66 PRK11058 GTPase HflX; Provisio 99.8 1.4E-18 3E-23 157.5 17.8 167 19-211 196-363 (426)
67 PRK12297 obgE GTPase CgtA; Rev 99.8 2.7E-18 5.8E-23 154.7 19.5 166 22-212 160-329 (424)
68 cd04142 RRP22 RRP22 subfamily. 99.8 4.4E-18 9.4E-23 139.8 19.0 172 21-213 1-177 (198)
69 PRK00093 GTP-binding protein D 99.8 1.2E-18 2.6E-23 160.5 17.0 157 21-207 2-159 (435)
70 cd04154 Arl2 Arl2 subfamily. 99.8 8.2E-19 1.8E-23 141.3 14.0 157 15-206 9-171 (173)
71 cd01889 SelB_euk SelB subfamil 99.8 7E-19 1.5E-23 144.2 13.8 165 21-210 1-186 (192)
72 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.5E-18 5.5E-23 141.9 16.9 163 21-211 1-169 (201)
73 cd04127 Rab27A Rab27a subfamil 99.8 5.8E-18 1.3E-22 137.2 18.7 162 19-209 3-176 (180)
74 cd04110 Rab35 Rab35 subfamily. 99.8 2.9E-18 6.2E-23 141.3 17.1 161 19-211 5-168 (199)
75 PRK12296 obgE GTPase CgtA; Rev 99.8 2.3E-18 5E-23 157.0 17.9 170 20-212 159-342 (500)
76 cd04106 Rab23_lke Rab23-like s 99.8 3.7E-18 8E-23 135.8 16.9 156 21-207 1-160 (162)
77 cd01888 eIF2_gamma eIF2-gamma 99.8 1.3E-18 2.8E-23 143.6 14.6 163 21-211 1-200 (203)
78 KOG3859 Septins (P-loop GTPase 99.8 1.8E-17 3.8E-22 136.2 20.8 163 20-195 42-226 (406)
79 cd04160 Arfrp1 Arfrp1 subfamil 99.8 7E-19 1.5E-23 140.8 12.5 158 22-206 1-165 (167)
80 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2.5E-18 5.3E-23 138.1 15.7 162 22-211 2-166 (170)
81 cd01881 Obg_like The Obg-like 99.8 1.2E-18 2.6E-23 140.6 13.9 162 25-208 1-175 (176)
82 KOG0084 GTPase Rab1/YPT1, smal 99.8 3.3E-18 7.2E-23 133.8 15.6 163 20-213 9-175 (205)
83 cd04144 Ras2 Ras2 subfamily. 99.8 1.8E-18 3.8E-23 141.6 15.0 160 22-211 1-164 (190)
84 cd04136 Rap_like Rap-like subf 99.8 1.8E-18 3.8E-23 137.8 14.5 157 21-208 2-161 (163)
85 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.3E-18 7.1E-23 136.6 15.6 161 23-206 2-162 (164)
86 PRK09518 bifunctional cytidyla 99.8 2.4E-18 5.3E-23 166.4 17.7 166 16-211 271-437 (712)
87 cd04145 M_R_Ras_like M-Ras/R-R 99.8 3.5E-18 7.7E-23 136.2 15.8 159 20-209 2-163 (164)
88 smart00177 ARF ARF-like small 99.8 2.3E-18 4.9E-23 139.0 14.5 160 18-209 11-173 (175)
89 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.7E-18 7.9E-23 139.5 15.8 137 20-178 2-152 (195)
90 PLN03071 GTP-binding nuclear p 99.8 3.8E-18 8.1E-23 142.5 16.1 162 17-211 10-173 (219)
91 cd04149 Arf6 Arf6 subfamily. 99.8 1.4E-18 3E-23 139.3 13.0 156 19-206 8-166 (168)
92 cd04158 ARD1 ARD1 subfamily. 99.8 3E-18 6.5E-23 137.5 14.9 157 22-211 1-162 (169)
93 PRK09518 bifunctional cytidyla 99.8 9.2E-18 2E-22 162.4 20.6 172 19-211 449-622 (712)
94 cd04125 RabA_like RabA-like su 99.8 4.9E-18 1.1E-22 138.7 16.0 160 21-211 1-163 (188)
95 cd04123 Rab21 Rab21 subfamily. 99.8 6.9E-18 1.5E-22 134.1 16.4 158 21-209 1-161 (162)
96 cd00877 Ran Ran (Ras-related n 99.8 2.6E-18 5.7E-23 137.4 13.9 156 21-211 1-160 (166)
97 PRK09866 hypothetical protein; 99.8 2.3E-16 5.1E-21 144.9 28.2 121 70-207 230-350 (741)
98 cd04138 H_N_K_Ras_like H-Ras/N 99.8 7.2E-18 1.6E-22 133.9 16.3 156 21-208 2-160 (162)
99 PLN03110 Rab GTPase; Provision 99.8 1.4E-17 3E-22 138.9 18.6 162 19-211 11-175 (216)
100 cd01863 Rab18 Rab18 subfamily. 99.8 4.9E-18 1.1E-22 135.1 15.2 156 21-207 1-159 (161)
101 smart00173 RAS Ras subfamily o 99.8 5.2E-18 1.1E-22 135.3 15.2 158 21-209 1-161 (164)
102 cd04111 Rab39 Rab39 subfamily. 99.8 9.9E-18 2.1E-22 139.2 17.3 163 20-211 2-167 (211)
103 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 9.5E-18 2.1E-22 134.9 16.7 158 21-210 3-164 (172)
104 cd04157 Arl6 Arl6 subfamily. 99.8 3.1E-18 6.7E-23 136.3 13.7 158 22-206 1-160 (162)
105 cd00154 Rab Rab family. Rab G 99.8 5.5E-18 1.2E-22 133.8 15.1 156 21-206 1-158 (159)
106 cd04117 Rab15 Rab15 subfamily. 99.8 9E-18 1.9E-22 133.7 16.4 157 21-208 1-160 (161)
107 cd04175 Rap1 Rap1 subgroup. T 99.8 5.2E-18 1.1E-22 135.4 15.0 158 21-209 2-162 (164)
108 cd01862 Rab7 Rab7 subfamily. 99.8 1.9E-17 4.1E-22 133.0 18.3 162 21-211 1-168 (172)
109 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 9.9E-18 2.1E-22 130.7 15.7 163 19-211 21-186 (221)
110 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 4.3E-18 9.3E-23 138.4 14.5 163 20-209 3-169 (183)
111 PLN00223 ADP-ribosylation fact 99.8 4.5E-18 9.8E-23 137.9 14.5 159 18-210 15-178 (181)
112 TIGR00450 mnmE_trmE_thdF tRNA 99.8 9.6E-18 2.1E-22 152.9 18.3 124 18-152 201-324 (442)
113 PLN03118 Rab family protein; P 99.8 1E-17 2.3E-22 139.3 17.0 166 15-211 9-178 (211)
114 cd04101 RabL4 RabL4 (Rab-like4 99.8 8.9E-18 1.9E-22 134.0 15.9 158 21-208 1-162 (164)
115 COG3596 Predicted GTPase [Gene 99.8 3.1E-18 6.7E-23 141.3 13.4 179 17-212 36-224 (296)
116 KOG1547 Septin CDC10 and relat 99.8 6.4E-18 1.4E-22 136.0 14.5 155 20-188 46-227 (336)
117 cd01893 Miro1 Miro1 subfamily. 99.8 1.1E-17 2.5E-22 133.7 16.0 157 21-209 1-163 (166)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.5E-18 5.4E-23 136.6 11.8 157 22-207 1-159 (160)
119 PTZ00369 Ras-like protein; Pro 99.8 9.6E-18 2.1E-22 137.1 15.6 160 20-210 5-167 (189)
120 cd04118 Rab24 Rab24 subfamily. 99.8 1.1E-17 2.4E-22 137.2 15.9 161 21-210 1-166 (193)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.5E-18 1.2E-22 136.7 13.9 157 19-206 14-172 (174)
122 cd01876 YihA_EngB The YihA (En 99.8 2.4E-17 5.2E-22 131.6 17.5 163 23-208 2-169 (170)
123 cd04128 Spg1 Spg1p. Spg1p (se 99.8 2.1E-17 4.5E-22 134.1 17.3 162 21-210 1-166 (182)
124 cd04114 Rab30 Rab30 subfamily. 99.8 2.7E-17 5.8E-22 131.8 17.3 159 19-208 6-167 (169)
125 cd04132 Rho4_like Rho4-like su 99.8 1.3E-17 2.9E-22 136.0 15.6 161 21-210 1-167 (187)
126 cd04104 p47_IIGP_like p47 (47- 99.8 2.1E-17 4.5E-22 135.8 16.8 171 21-211 2-185 (197)
127 PTZ00133 ADP-ribosylation fact 99.8 7.2E-18 1.6E-22 136.9 13.8 161 18-210 15-178 (182)
128 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.3E-17 7.2E-22 131.6 17.4 160 20-209 2-168 (170)
129 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.9E-18 1.1E-22 134.9 12.4 155 21-206 1-157 (159)
130 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-18 7.8E-23 141.6 12.0 152 22-200 1-184 (208)
131 cd01891 TypA_BipA TypA (tyrosi 99.8 1.3E-17 2.7E-22 137.0 15.1 117 20-153 2-132 (194)
132 cd04155 Arl3 Arl3 subfamily. 99.8 7.2E-18 1.6E-22 135.7 13.4 160 18-207 12-172 (173)
133 cd04126 Rab20 Rab20 subfamily. 99.8 1.9E-17 4.1E-22 137.7 16.2 164 21-209 1-189 (220)
134 cd04151 Arl1 Arl1 subfamily. 99.8 4.2E-18 9.1E-23 135.1 11.6 155 22-207 1-157 (158)
135 cd01890 LepA LepA subfamily. 99.8 4.9E-18 1.1E-22 137.5 12.2 159 21-209 1-176 (179)
136 smart00178 SAR Sar1p-like memb 99.8 5.3E-18 1.1E-22 138.0 12.2 163 18-207 15-182 (184)
137 KOG1423 Ras-like GTPase ERA [C 99.8 5.4E-18 1.2E-22 141.2 12.1 199 18-224 70-284 (379)
138 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-17 2.7E-22 133.6 14.0 159 22-207 1-166 (167)
139 cd04116 Rab9 Rab9 subfamily. 99.8 3.3E-17 7.1E-22 131.5 16.4 160 18-207 3-168 (170)
140 cd04176 Rap2 Rap2 subgroup. T 99.8 1.4E-17 3.1E-22 132.7 14.0 157 21-208 2-161 (163)
141 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.2E-17 2.5E-22 132.5 13.1 155 22-207 1-157 (158)
142 cd01874 Cdc42 Cdc42 subfamily. 99.8 3.3E-17 7.2E-22 132.1 15.6 160 21-207 2-172 (175)
143 cd00879 Sar1 Sar1 subfamily. 99.8 1.1E-17 2.3E-22 136.9 12.8 168 18-208 17-189 (190)
144 PLN03108 Rab family protein; P 99.8 6.8E-17 1.5E-21 134.2 17.6 160 19-209 5-167 (210)
145 COG2262 HflX GTPases [General 99.8 3.5E-17 7.6E-22 142.4 16.3 168 17-211 189-357 (411)
146 cd00157 Rho Rho (Ras homology) 99.8 1.3E-17 2.9E-22 133.8 12.9 162 21-207 1-170 (171)
147 cd04134 Rho3 Rho3 subfamily. 99.8 2.4E-17 5.2E-22 134.7 14.3 163 21-210 1-174 (189)
148 PRK12317 elongation factor 1-a 99.8 1.2E-17 2.5E-22 153.1 13.7 157 17-200 3-195 (425)
149 cd01875 RhoG RhoG subfamily. 99.8 5.2E-17 1.1E-21 132.9 15.9 164 20-209 3-176 (191)
150 PRK15467 ethanolamine utilizat 99.8 2.3E-17 4.9E-22 130.7 13.3 143 22-210 3-147 (158)
151 TIGR00475 selB selenocysteine- 99.8 5E-17 1.1E-21 153.2 17.9 161 21-211 1-167 (581)
152 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 8.2E-17 1.8E-21 130.4 16.7 165 18-208 3-178 (182)
153 cd04139 RalA_RalB RalA/RalB su 99.7 8E-17 1.7E-21 128.2 16.4 158 21-209 1-161 (164)
154 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.2E-16 2.6E-21 133.7 17.8 169 16-210 9-188 (232)
155 TIGR00487 IF-2 translation ini 99.7 4.4E-17 9.6E-22 152.9 16.9 160 19-207 86-247 (587)
156 PRK05306 infB translation init 99.7 2.4E-17 5.1E-22 158.3 15.2 159 19-207 289-449 (787)
157 cd04146 RERG_RasL11_like RERG/ 99.7 2.9E-17 6.4E-22 131.2 13.3 159 22-209 1-163 (165)
158 KOG0073 GTP-binding ADP-ribosy 99.7 7.8E-17 1.7E-21 122.1 14.6 160 19-209 15-177 (185)
159 PRK10512 selenocysteinyl-tRNA- 99.7 6E-17 1.3E-21 153.1 17.4 162 22-211 2-167 (614)
160 cd01871 Rac1_like Rac1-like su 99.7 6.7E-17 1.5E-21 130.2 15.2 162 21-207 2-172 (174)
161 smart00174 RHO Rho (Ras homolo 99.7 4E-17 8.6E-22 131.5 13.9 162 23-209 1-171 (174)
162 KOG0078 GTP-binding protein SE 99.7 9.8E-17 2.1E-21 127.4 15.6 164 16-210 8-174 (207)
163 cd04147 Ras_dva Ras-dva subfam 99.7 8.3E-17 1.8E-21 132.5 15.8 159 22-210 1-163 (198)
164 KOG0092 GTPase Rab5/YPT51 and 99.7 2.5E-17 5.3E-22 128.5 11.7 162 20-212 5-169 (200)
165 cd04131 Rnd Rnd subfamily. Th 99.7 1.1E-16 2.5E-21 129.2 16.1 162 21-208 2-174 (178)
166 cd04148 RGK RGK subfamily. Th 99.7 8.8E-17 1.9E-21 134.4 15.9 160 21-210 1-163 (221)
167 cd00876 Ras Ras family. The R 99.7 1E-16 2.2E-21 127.1 15.2 155 22-207 1-158 (160)
168 TIGR02528 EutP ethanolamine ut 99.7 2.2E-17 4.9E-22 128.5 11.2 139 22-206 2-141 (142)
169 cd04177 RSR1 RSR1 subgroup. R 99.7 9.4E-17 2E-21 128.7 14.9 157 21-208 2-162 (168)
170 cd01896 DRG The developmentall 99.7 1.6E-16 3.4E-21 133.6 16.9 88 22-116 2-89 (233)
171 cd04159 Arl10_like Arl10-like 99.7 2.6E-17 5.6E-22 130.0 11.5 156 23-207 2-158 (159)
172 cd04137 RheB Rheb (Ras Homolog 99.7 1.4E-16 2.9E-21 129.2 15.9 161 21-212 2-165 (180)
173 cd00880 Era_like Era (E. coli 99.7 1.6E-16 3.5E-21 125.3 16.0 162 25-208 1-162 (163)
174 cd01892 Miro2 Miro2 subfamily. 99.7 1.2E-16 2.6E-21 128.2 14.7 160 19-209 3-165 (169)
175 CHL00189 infB translation init 99.7 8.1E-17 1.8E-21 153.3 15.6 163 18-209 242-409 (742)
176 PF00025 Arf: ADP-ribosylation 99.7 2.6E-17 5.7E-22 132.6 10.6 160 18-208 12-174 (175)
177 cd04133 Rop_like Rop subfamily 99.7 1.5E-16 3.2E-21 128.1 14.8 164 21-209 2-172 (176)
178 CHL00071 tufA elongation facto 99.7 2.1E-16 4.6E-21 143.7 17.5 140 16-178 8-162 (409)
179 cd01870 RhoA_like RhoA-like su 99.7 1.7E-16 3.7E-21 128.0 14.9 161 21-208 2-173 (175)
180 cd04135 Tc10 TC10 subfamily. 99.7 1.7E-16 3.7E-21 127.9 14.5 162 21-208 1-172 (174)
181 smart00176 RAN Ran (Ras-relate 99.7 1.6E-16 3.5E-21 130.4 14.1 151 26-211 1-155 (200)
182 cd04143 Rhes_like Rhes_like su 99.7 2.1E-16 4.7E-21 133.9 14.8 159 21-209 1-170 (247)
183 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2E-16 4.3E-21 127.4 13.7 161 21-206 1-170 (173)
184 PRK12735 elongation factor Tu; 99.7 4.4E-16 9.5E-21 141.0 17.4 165 17-210 9-203 (396)
185 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 5.4E-16 1.2E-20 129.0 16.6 163 21-209 2-175 (222)
186 TIGR00437 feoB ferrous iron tr 99.7 2.4E-16 5.3E-21 148.7 15.3 154 27-209 1-154 (591)
187 KOG0394 Ras-related GTPase [Ge 99.7 5E-16 1.1E-20 120.1 14.0 167 18-211 7-179 (210)
188 cd04168 TetM_like Tet(M)-like 99.7 2.4E-16 5.1E-21 132.8 13.4 115 22-153 1-131 (237)
189 PRK12736 elongation factor Tu; 99.7 8.8E-16 1.9E-20 139.0 17.8 165 17-210 9-201 (394)
190 cd01886 EF-G Elongation factor 99.7 2.3E-16 4.9E-21 135.2 13.0 115 22-153 1-131 (270)
191 TIGR00231 small_GTP small GTP- 99.7 7.7E-16 1.7E-20 121.3 15.2 153 21-206 2-160 (161)
192 cd04165 GTPBP1_like GTPBP1-lik 99.7 6.3E-16 1.4E-20 129.0 13.9 162 22-208 1-221 (224)
193 PLN03127 Elongation factor Tu; 99.7 7.3E-16 1.6E-20 140.8 15.4 169 16-210 57-252 (447)
194 KOG0087 GTPase Rab11/YPT3, sma 99.7 1.3E-15 2.8E-20 120.6 14.5 160 18-208 12-174 (222)
195 KOG0080 GTPase Rab18, small G 99.7 1.6E-15 3.5E-20 114.4 14.2 159 19-207 10-171 (209)
196 TIGR00485 EF-Tu translation el 99.7 1.4E-15 3.1E-20 137.8 16.8 122 16-153 8-143 (394)
197 cd01883 EF1_alpha Eukaryotic e 99.7 4.2E-16 9E-21 130.2 12.3 151 22-199 1-194 (219)
198 PRK05124 cysN sulfate adenylyl 99.7 7.3E-16 1.6E-20 142.1 14.6 157 17-200 24-215 (474)
199 PF00071 Ras: Ras family; Int 99.7 9.1E-16 2E-20 122.0 13.3 157 22-209 1-160 (162)
200 TIGR00483 EF-1_alpha translati 99.7 8.7E-16 1.9E-20 140.7 14.8 156 18-200 5-197 (426)
201 TIGR01394 TypA_BipA GTP-bindin 99.7 1.2E-15 2.7E-20 143.6 16.1 160 21-211 2-192 (594)
202 cd04169 RF3 RF3 subfamily. Pe 99.7 1.1E-15 2.5E-20 130.8 14.5 116 21-153 3-138 (267)
203 TIGR03680 eif2g_arch translati 99.7 8.6E-16 1.9E-20 139.6 14.2 164 19-210 3-196 (406)
204 KOG0098 GTPase Rab2, small G p 99.7 5.6E-15 1.2E-19 114.5 16.4 160 19-209 5-167 (216)
205 PTZ00132 GTP-binding nuclear p 99.7 2.9E-15 6.3E-20 125.0 16.2 161 16-211 5-169 (215)
206 PRK04000 translation initiatio 99.7 1.3E-15 2.8E-20 138.3 15.2 168 15-210 4-201 (411)
207 cd00882 Ras_like_GTPase Ras-li 99.7 9.3E-16 2E-20 119.7 12.4 153 25-206 1-156 (157)
208 TIGR00491 aIF-2 translation in 99.7 1.4E-15 3.1E-20 142.6 15.7 115 20-152 4-135 (590)
209 cd04102 RabL3 RabL3 (Rab-like3 99.7 6.2E-15 1.4E-19 121.0 17.3 146 21-184 1-170 (202)
210 TIGR01393 lepA GTP-binding pro 99.7 1.2E-15 2.6E-20 144.0 14.8 162 20-211 3-181 (595)
211 PRK00049 elongation factor Tu; 99.7 2.9E-15 6.2E-20 135.6 16.7 171 17-210 9-203 (396)
212 KOG0079 GTP-binding protein H- 99.7 2.1E-15 4.6E-20 112.2 12.6 157 21-209 9-168 (198)
213 TIGR02034 CysN sulfate adenyly 99.7 1.3E-15 2.8E-20 138.3 14.1 153 21-200 1-187 (406)
214 KOG1191 Mitochondrial GTPase [ 99.7 7E-16 1.5E-20 136.4 11.8 177 19-210 267-450 (531)
215 PF00350 Dynamin_N: Dynamin fa 99.7 5.6E-16 1.2E-20 124.2 10.2 115 23-148 1-168 (168)
216 PRK05506 bifunctional sulfate 99.7 1.4E-15 3.1E-20 145.6 14.8 157 16-199 20-210 (632)
217 PRK05433 GTP-binding protein L 99.7 1.9E-15 4E-20 142.9 14.6 164 18-211 5-185 (600)
218 PRK10218 GTP-binding protein; 99.6 4.4E-15 9.5E-20 139.8 16.5 118 19-153 4-135 (607)
219 cd01873 RhoBTB RhoBTB subfamil 99.6 8.3E-15 1.8E-19 120.0 15.7 164 20-207 2-193 (195)
220 cd04103 Centaurin_gamma Centau 99.6 4.2E-15 9.1E-20 117.8 13.5 152 21-207 1-156 (158)
221 KOG0093 GTPase Rab3, small G p 99.6 3.2E-15 6.9E-20 111.2 11.8 161 19-209 20-182 (193)
222 cd04129 Rho2 Rho2 subfamily. 99.6 4.3E-15 9.2E-20 121.2 13.7 164 21-209 2-172 (187)
223 KOG1490 GTP-binding protein CR 99.6 1.1E-15 2.4E-20 135.1 10.7 137 13-161 161-302 (620)
224 cd04170 EF-G_bact Elongation f 99.6 3.3E-15 7.1E-20 128.7 12.9 115 22-153 1-131 (268)
225 PF10662 PduV-EutP: Ethanolami 99.6 2.1E-15 4.5E-20 114.7 10.1 141 21-206 2-142 (143)
226 KOG1489 Predicted GTP-binding 99.6 2.8E-15 6.2E-20 125.8 11.8 164 20-207 196-364 (366)
227 PLN03126 Elongation factor Tu; 99.6 1.6E-14 3.4E-19 132.8 17.6 139 17-177 78-230 (478)
228 PRK04004 translation initiatio 99.6 1.2E-14 2.7E-19 136.8 16.8 114 20-151 6-136 (586)
229 KOG0095 GTPase Rab30, small G 99.6 1.8E-14 4E-19 107.4 13.6 155 21-206 8-165 (213)
230 COG2229 Predicted GTPase [Gene 99.6 4.6E-14 1E-18 109.8 15.9 156 20-207 10-175 (187)
231 KOG0462 Elongation factor-type 99.6 5.1E-15 1.1E-19 132.3 11.6 170 15-214 55-239 (650)
232 cd04105 SR_beta Signal recogni 99.6 1.9E-14 4E-19 118.7 14.3 119 21-153 1-124 (203)
233 PF05049 IIGP: Interferon-indu 99.6 4.6E-15 9.9E-20 130.4 10.9 174 18-211 33-219 (376)
234 PF08477 Miro: Miro-like prote 99.6 1.5E-15 3.3E-20 114.4 6.7 116 22-149 1-119 (119)
235 COG0536 Obg Predicted GTPase [ 99.6 3.1E-14 6.7E-19 121.1 15.0 170 22-212 161-335 (369)
236 COG0532 InfB Translation initi 99.6 2.1E-14 4.6E-19 129.1 14.8 163 20-209 5-169 (509)
237 cd01885 EF2 EF2 (for archaea a 99.6 1.1E-14 2.3E-19 121.1 12.0 115 21-151 1-138 (222)
238 cd04167 Snu114p Snu114p subfam 99.6 4.5E-15 9.9E-20 123.5 9.7 114 22-151 2-136 (213)
239 PLN00023 GTP-binding protein; 99.6 3E-14 6.5E-19 122.8 14.9 126 15-153 16-166 (334)
240 smart00053 DYNc Dynamin, GTPas 99.6 4.4E-14 9.6E-19 118.1 15.0 130 19-153 25-207 (240)
241 PTZ00141 elongation factor 1- 99.6 2.5E-14 5.3E-19 131.0 14.1 155 18-199 5-202 (446)
242 TIGR00484 EF-G translation elo 99.6 2.5E-14 5.3E-19 138.3 14.5 121 16-153 6-142 (689)
243 PTZ00327 eukaryotic translatio 99.6 3.4E-14 7.3E-19 129.8 14.5 167 17-211 31-234 (460)
244 PRK00007 elongation factor G; 99.6 3.1E-14 6.7E-19 137.5 13.7 120 17-153 7-142 (693)
245 PRK12739 elongation factor G; 99.6 2.6E-14 5.5E-19 138.2 13.0 120 17-153 5-140 (691)
246 COG1100 GTPase SAR1 and relate 99.6 1.7E-13 3.7E-18 114.5 16.3 117 21-153 6-126 (219)
247 KOG1145 Mitochondrial translat 99.6 9E-14 2E-18 124.4 15.0 163 19-208 152-314 (683)
248 PRK13351 elongation factor G; 99.6 3.5E-14 7.7E-19 137.5 13.7 120 17-153 5-140 (687)
249 KOG0088 GTPase Rab21, small G 99.5 3E-14 6.4E-19 107.4 9.2 158 20-210 13-175 (218)
250 COG5256 TEF1 Translation elong 99.5 1.5E-13 3.3E-18 119.8 14.5 142 18-180 5-182 (428)
251 TIGR00503 prfC peptide chain r 99.5 9.1E-14 2E-18 129.4 14.1 119 18-153 9-147 (527)
252 PRK00741 prfC peptide chain re 99.5 1E-13 2.2E-18 129.1 14.2 119 18-153 8-146 (526)
253 KOG0091 GTPase Rab39, small G 99.5 1.1E-13 2.3E-18 105.0 11.5 162 20-209 8-172 (213)
254 KOG0075 GTP-binding ADP-ribosy 99.5 2.3E-14 4.9E-19 106.7 7.5 162 18-209 18-181 (186)
255 COG1163 DRG Predicted GTPase [ 99.5 7.8E-14 1.7E-18 117.7 11.6 95 14-115 57-151 (365)
256 PLN00043 elongation factor 1-a 99.5 2.1E-13 4.7E-18 124.8 14.8 155 18-199 5-202 (447)
257 KOG0070 GTP-binding ADP-ribosy 99.5 4.8E-14 1E-18 109.8 8.7 166 14-210 11-178 (181)
258 TIGR02836 spore_IV_A stage IV 99.5 7.6E-13 1.6E-17 116.2 16.4 190 17-226 14-253 (492)
259 PRK09602 translation-associate 99.5 2.8E-12 6.1E-17 115.4 20.3 89 21-115 2-113 (396)
260 cd01899 Ygr210 Ygr210 subfamil 99.5 9.9E-13 2.2E-17 114.9 16.4 87 23-115 1-110 (318)
261 KOG0086 GTPase Rab4, small G p 99.5 1.2E-12 2.7E-17 98.1 13.9 153 21-206 10-167 (214)
262 KOG0448 Mitofusin 1 GTPase, in 99.5 7.3E-12 1.6E-16 115.1 20.6 122 19-153 108-276 (749)
263 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 4.5E-13 9.7E-18 111.4 11.5 125 22-153 1-126 (232)
264 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.6E-12 1.6E-16 104.8 17.3 112 17-153 36-148 (225)
265 PF09439 SRPRB: Signal recogni 99.4 2.5E-13 5.4E-18 108.1 7.5 121 20-153 3-127 (181)
266 KOG0076 GTP-binding ADP-ribosy 99.4 4.4E-13 9.6E-18 102.9 8.4 170 18-212 15-189 (197)
267 KOG0071 GTP-binding ADP-ribosy 99.4 4.2E-12 9E-17 94.0 12.0 161 17-209 14-177 (180)
268 PTZ00416 elongation factor 2; 99.4 1.1E-12 2.4E-17 128.8 11.7 119 17-151 16-157 (836)
269 KOG0395 Ras-related GTPase [Ge 99.4 3E-12 6.5E-17 104.4 12.2 163 20-211 3-166 (196)
270 COG4917 EutP Ethanolamine util 99.4 7.1E-13 1.5E-17 96.2 7.2 142 21-207 2-143 (148)
271 PLN00116 translation elongatio 99.4 1.9E-12 4E-17 127.5 12.4 120 16-151 15-163 (843)
272 KOG0074 GTP-binding ADP-ribosy 99.4 1E-12 2.3E-17 97.2 7.5 163 15-207 12-176 (185)
273 PRK12740 elongation factor G; 99.4 3.3E-12 7.1E-17 123.7 12.9 111 26-153 1-127 (668)
274 PTZ00258 GTP-binding protein; 99.4 3.6E-12 7.8E-17 113.5 11.9 95 15-115 16-126 (390)
275 TIGR00490 aEF-2 translation el 99.4 1.2E-12 2.6E-17 127.0 9.5 118 18-152 17-152 (720)
276 PRK09435 membrane ATPase/prote 99.4 5.2E-11 1.1E-15 104.3 18.6 116 69-225 148-271 (332)
277 KOG0081 GTPase Rab27, small G 99.4 5.9E-13 1.3E-17 100.5 5.2 160 21-209 10-180 (219)
278 cd01900 YchF YchF subfamily. 99.4 2.9E-12 6.2E-17 109.4 10.1 87 23-115 1-103 (274)
279 KOG4252 GTP-binding protein [S 99.4 1.5E-12 3.3E-17 100.2 6.8 158 19-207 19-178 (246)
280 PRK13768 GTPase; Provisional 99.4 7.1E-12 1.5E-16 106.7 11.6 131 70-211 97-248 (253)
281 PRK09601 GTP-binding protein Y 99.4 7E-12 1.5E-16 110.4 11.6 89 21-115 3-107 (364)
282 KOG0410 Predicted GTP binding 99.4 4.4E-12 9.6E-17 107.0 9.8 161 19-210 177-341 (410)
283 COG0480 FusA Translation elong 99.3 1.3E-11 2.8E-16 117.4 13.3 120 17-153 7-143 (697)
284 KOG1532 GTPase XAB1, interacts 99.3 1.8E-10 3.8E-15 95.3 17.1 129 71-211 117-265 (366)
285 COG3276 SelB Selenocysteine-sp 99.3 2E-11 4.3E-16 107.5 12.3 159 22-209 2-161 (447)
286 cd01851 GBP Guanylate-binding 99.3 3.3E-10 7.1E-15 94.7 18.9 129 18-151 5-147 (224)
287 KOG1707 Predicted Ras related/ 99.3 7.4E-12 1.6E-16 113.2 9.3 173 19-218 8-183 (625)
288 COG0481 LepA Membrane GTPase L 99.3 6.5E-12 1.4E-16 111.0 8.5 169 16-214 5-190 (603)
289 COG2895 CysN GTPases - Sulfate 99.3 2.9E-11 6.2E-16 103.3 11.9 157 18-198 4-191 (431)
290 COG1217 TypA Predicted membran 99.3 7.8E-11 1.7E-15 104.0 14.1 170 19-213 4-198 (603)
291 PRK07560 elongation factor EF- 99.3 1.6E-11 3.5E-16 119.5 10.5 119 17-151 17-152 (731)
292 KOG0083 GTPase Rab26/Rab37, sm 99.3 4.9E-12 1.1E-16 92.7 4.4 157 25-211 2-161 (192)
293 KOG1144 Translation initiation 99.3 3.2E-11 7E-16 111.4 10.6 174 19-210 474-687 (1064)
294 KOG0458 Elongation factor 1 al 99.3 7.3E-11 1.6E-15 106.9 12.6 143 15-178 172-351 (603)
295 cd01858 NGP_1 NGP-1. Autoanti 99.2 2.5E-11 5.5E-16 96.0 7.4 57 19-80 101-157 (157)
296 KOG0072 GTP-binding ADP-ribosy 99.2 1.3E-11 2.9E-16 91.8 4.9 162 19-211 17-180 (182)
297 PTZ00099 rab6; Provisional 99.2 3.1E-10 6.8E-15 91.3 13.3 114 70-211 29-143 (176)
298 KOG0393 Ras-related small GTPa 99.2 7.1E-11 1.5E-15 94.6 9.3 163 20-208 4-177 (198)
299 KOG0097 GTPase Rab14, small G 99.2 8.6E-10 1.9E-14 81.8 14.0 153 20-203 11-166 (215)
300 cd04178 Nucleostemin_like Nucl 99.2 3.5E-11 7.6E-16 96.2 7.0 57 19-80 116-172 (172)
301 PRK14845 translation initiatio 99.2 2.9E-10 6.2E-15 112.4 14.5 103 32-152 473-592 (1049)
302 COG0012 Predicted GTPase, prob 99.2 7.8E-10 1.7E-14 96.2 15.5 89 21-115 3-108 (372)
303 COG0050 TufB GTPases - transla 99.2 3.8E-10 8.3E-15 94.2 12.5 173 17-211 9-202 (394)
304 KOG1954 Endocytosis/signaling 99.2 1.3E-08 2.7E-13 87.8 21.3 130 18-153 56-226 (532)
305 COG5257 GCD11 Translation init 99.1 4.3E-10 9.3E-15 95.0 11.0 166 18-211 8-203 (415)
306 KOG0461 Selenocysteine-specifi 99.1 9.9E-10 2.1E-14 93.7 13.1 164 20-210 7-193 (522)
307 KOG2486 Predicted GTPase [Gene 99.1 2.8E-10 6.1E-15 94.4 9.6 128 16-153 132-263 (320)
308 PRK09563 rbgA GTPase YlqF; Rev 99.1 3.5E-10 7.6E-15 98.3 9.9 67 18-89 119-185 (287)
309 KOG0090 Signal recognition par 99.1 4.9E-10 1.1E-14 89.4 9.6 116 20-153 38-160 (238)
310 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 2.2E-10 4.9E-15 88.8 7.4 60 17-81 80-139 (141)
311 cd01855 YqeH YqeH. YqeH is an 99.1 1.4E-10 3.1E-15 94.7 6.2 57 20-80 127-190 (190)
312 PF03193 DUF258: Protein of un 99.1 5.8E-11 1.3E-15 92.7 3.5 61 21-85 36-102 (161)
313 cd01849 YlqF_related_GTPase Yl 99.1 2.9E-10 6.2E-15 89.7 7.1 58 18-80 98-155 (155)
314 TIGR03596 GTPase_YlqF ribosome 99.0 1E-09 2.2E-14 94.8 9.2 65 18-87 116-180 (276)
315 COG4108 PrfC Peptide chain rel 99.0 2.8E-09 6.2E-14 93.7 11.5 118 19-153 11-148 (528)
316 KOG0447 Dynamin-like GTP bindi 99.0 4E-09 8.7E-14 95.0 12.3 132 18-153 306-494 (980)
317 TIGR00750 lao LAO/AO transport 99.0 2.3E-08 5.1E-13 87.4 17.0 110 69-210 126-238 (300)
318 cd01856 YlqF YlqF. Proteins o 99.0 1.2E-09 2.5E-14 87.7 7.8 59 18-81 113-171 (171)
319 KOG3886 GTP-binding protein [S 99.0 1E-09 2.2E-14 88.6 7.2 127 20-153 4-131 (295)
320 KOG0077 Vesicle coat complex C 99.0 4.6E-09 9.9E-14 80.4 10.1 115 18-153 18-136 (193)
321 KOG1486 GTP-binding protein DR 99.0 4.9E-09 1.1E-13 85.8 10.3 91 18-115 60-150 (364)
322 PRK12288 GTPase RsgA; Reviewed 99.0 1.8E-09 3.8E-14 95.7 8.5 60 22-85 207-272 (347)
323 TIGR03597 GTPase_YqeH ribosome 99.0 1.4E-09 3E-14 97.4 7.8 121 21-151 155-279 (360)
324 COG1161 Predicted GTPases [Gen 98.9 2.3E-09 4.9E-14 94.3 8.0 62 19-85 131-192 (322)
325 COG1162 Predicted GTPases [Gen 98.9 4.6E-09 9.9E-14 89.4 8.3 62 20-85 164-231 (301)
326 PF03029 ATP_bind_1: Conserved 98.9 1.3E-09 2.9E-14 91.7 5.0 77 71-153 92-171 (238)
327 PRK12289 GTPase RsgA; Reviewed 98.9 3E-09 6.5E-14 94.3 7.4 59 22-84 174-238 (352)
328 KOG0464 Elongation factor G [T 98.9 3E-09 6.5E-14 92.8 7.1 121 16-153 33-169 (753)
329 COG5192 BMS1 GTP-binding prote 98.9 1.8E-08 3.9E-13 91.2 12.1 141 17-185 66-207 (1077)
330 TIGR01425 SRP54_euk signal rec 98.9 3.8E-07 8.3E-12 82.5 20.2 123 19-153 99-254 (429)
331 KOG3883 Ras family small GTPas 98.9 1.2E-07 2.6E-12 71.6 14.0 118 21-153 10-133 (198)
332 KOG1424 Predicted GTP-binding 98.9 3.6E-09 7.7E-14 94.8 6.7 62 20-86 314-375 (562)
333 TIGR00157 ribosome small subun 98.9 4.5E-09 9.8E-14 89.1 6.4 60 21-85 121-186 (245)
334 TIGR03348 VI_IcmF type VI secr 98.9 8.4E-08 1.8E-12 98.1 16.5 124 21-153 112-258 (1169)
335 cd00066 G-alpha G protein alph 98.9 6E-08 1.3E-12 85.4 13.5 86 55-152 147-242 (317)
336 KOG0468 U5 snRNP-specific prot 98.8 2.1E-08 4.5E-13 92.3 10.3 119 17-151 125-262 (971)
337 KOG1673 Ras GTPases [General f 98.8 4.7E-08 1E-12 74.0 10.5 168 16-209 16-185 (205)
338 cd01859 MJ1464 MJ1464. This f 98.8 1.2E-08 2.6E-13 80.5 7.7 57 19-80 100-156 (156)
339 KOG0467 Translation elongation 98.8 9.9E-09 2.1E-13 95.7 7.8 121 14-151 3-137 (887)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.6E-08 3.5E-13 87.8 8.6 72 21-96 162-242 (287)
341 KOG1491 Predicted GTP-binding 98.8 2.3E-08 4.9E-13 85.4 9.0 95 15-115 15-125 (391)
342 PRK13796 GTPase YqeH; Provisio 98.8 1E-08 2.2E-13 91.9 6.9 59 20-82 160-222 (365)
343 TIGR00092 GTP-binding protein 98.8 2.5E-08 5.4E-13 88.2 9.0 90 21-115 3-108 (368)
344 smart00275 G_alpha G protein a 98.8 2.2E-07 4.8E-12 82.5 15.1 86 55-152 170-265 (342)
345 PRK00098 GTPase RsgA; Reviewed 98.8 2.8E-08 6E-13 86.8 8.9 60 20-83 164-229 (298)
346 TIGR00073 hypB hydrogenase acc 98.8 5E-08 1.1E-12 80.7 9.5 26 18-43 20-45 (207)
347 PF03308 ArgK: ArgK protein; 98.7 1.6E-07 3.4E-12 78.3 11.6 100 69-209 121-229 (266)
348 KOG0460 Mitochondrial translat 98.7 1.5E-07 3.3E-12 80.4 11.2 172 16-210 50-245 (449)
349 KOG2485 Conserved ATP/GTP bind 98.7 5.4E-08 1.2E-12 82.4 7.5 71 17-88 140-214 (335)
350 PRK10416 signal recognition pa 98.7 1.8E-06 3.9E-11 75.8 17.1 126 18-153 112-274 (318)
351 PF00448 SRP54: SRP54-type pro 98.7 1.2E-07 2.5E-12 77.5 8.9 94 70-188 84-177 (196)
352 TIGR00064 ftsY signal recognit 98.7 9.8E-07 2.1E-11 75.9 15.0 76 68-153 153-232 (272)
353 KOG0465 Mitochondrial elongati 98.7 2.7E-08 5.9E-13 90.8 5.5 122 15-153 34-171 (721)
354 PRK12727 flagellar biosynthesi 98.6 4.7E-06 1E-10 76.9 17.5 167 18-211 348-545 (559)
355 PRK14974 cell division protein 98.6 3.4E-06 7.4E-11 74.4 15.9 73 69-153 222-294 (336)
356 TIGR00101 ureG urease accessor 98.6 4.5E-07 9.8E-12 74.4 9.4 82 105-208 113-194 (199)
357 PRK10463 hydrogenase nickel in 98.6 2.5E-07 5.3E-12 79.3 8.1 56 139-207 231-286 (290)
358 KOG0082 G-protein alpha subuni 98.6 1.2E-06 2.6E-11 76.7 12.3 88 54-153 180-277 (354)
359 PRK14722 flhF flagellar biosyn 98.5 1.1E-06 2.4E-11 78.2 11.9 128 19-153 136-296 (374)
360 PRK14721 flhF flagellar biosyn 98.5 1E-06 2.2E-11 79.7 11.4 145 18-188 189-363 (420)
361 PRK11889 flhF flagellar biosyn 98.5 5.2E-07 1.1E-11 80.1 8.5 123 19-153 240-392 (436)
362 COG1703 ArgK Putative periplas 98.5 8.2E-07 1.8E-11 75.1 9.1 108 69-210 143-254 (323)
363 COG3523 IcmF Type VI protein s 98.5 4.5E-06 9.8E-11 83.6 15.4 125 21-153 126-271 (1188)
364 PRK14723 flhF flagellar biosyn 98.4 2.8E-06 6.1E-11 81.7 12.8 165 20-208 185-381 (767)
365 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 8.9E-07 1.9E-11 69.5 7.4 117 19-153 9-129 (216)
366 KOG2484 GTPase [General functi 98.4 1.9E-07 4E-12 81.6 3.7 64 18-86 250-313 (435)
367 cd03112 CobW_like The function 98.4 2.3E-06 5E-11 67.5 9.1 22 22-43 2-23 (158)
368 COG5258 GTPBP1 GTPase [General 98.4 7.5E-06 1.6E-10 71.4 12.3 171 16-208 113-337 (527)
369 PRK00771 signal recognition pa 98.4 3.1E-06 6.6E-11 77.3 10.2 72 70-153 176-247 (437)
370 KOG2423 Nucleolar GTPase [Gene 98.3 2.7E-07 6E-12 80.4 2.9 65 16-85 303-367 (572)
371 PRK12724 flagellar biosynthesi 98.3 5.5E-06 1.2E-10 74.5 11.2 123 20-153 223-374 (432)
372 PRK12726 flagellar biosynthesi 98.3 6.8E-06 1.5E-10 72.8 11.4 144 19-187 205-378 (407)
373 COG1419 FlhF Flagellar GTP-bin 98.3 6.6E-06 1.4E-10 73.0 11.3 146 19-190 202-377 (407)
374 PRK06995 flhF flagellar biosyn 98.3 1.1E-05 2.4E-10 74.2 12.9 24 20-43 256-279 (484)
375 PRK05703 flhF flagellar biosyn 98.3 6.2E-06 1.3E-10 75.4 10.8 96 69-188 299-394 (424)
376 cd01858 NGP_1 NGP-1. Autoanti 98.3 2E-06 4.4E-11 67.8 6.3 91 100-209 4-94 (157)
377 PRK10867 signal recognition pa 98.2 2.7E-05 5.9E-10 71.0 13.8 73 69-153 183-255 (433)
378 KOG4423 GTP-binding protein-li 98.2 8.5E-08 1.8E-12 74.9 -2.1 170 17-213 22-197 (229)
379 PRK12723 flagellar biosynthesi 98.2 5.7E-05 1.2E-09 68.0 15.6 123 19-153 173-327 (388)
380 KOG1487 GTP-binding protein DR 98.2 1.8E-06 4E-11 71.3 5.3 108 19-135 58-165 (358)
381 cd03115 SRP The signal recogni 98.2 6E-05 1.3E-09 60.4 14.0 73 69-153 82-154 (173)
382 KOG0446 Vacuolar sorting prote 98.2 1.2E-06 2.6E-11 83.6 3.6 132 17-153 26-214 (657)
383 TIGR00959 ffh signal recogniti 98.2 5.2E-05 1.1E-09 69.1 13.7 73 69-153 182-254 (428)
384 KOG3905 Dynein light intermedi 98.2 0.00015 3.2E-09 62.2 15.2 65 138-209 222-289 (473)
385 cd01859 MJ1464 MJ1464. This f 98.2 1.4E-05 3E-10 63.0 8.8 88 102-211 10-97 (156)
386 KOG1143 Predicted translation 98.2 1.5E-05 3.1E-10 69.4 9.3 141 18-180 165-338 (591)
387 KOG0459 Polypeptide release fa 98.1 2.8E-06 6E-11 74.5 4.3 169 15-203 74-279 (501)
388 COG0378 HypB Ni2+-binding GTPa 98.1 1.7E-05 3.6E-10 63.3 8.3 81 106-208 119-199 (202)
389 PRK06731 flhF flagellar biosyn 98.1 1.1E-05 2.3E-10 69.1 7.6 123 19-153 74-226 (270)
390 PF00503 G-alpha: G-protein al 98.1 2.1E-05 4.5E-10 71.6 9.4 87 55-152 221-317 (389)
391 PRK01889 GTPase RsgA; Reviewed 98.1 3.4E-06 7.3E-11 75.5 3.7 59 20-82 195-259 (356)
392 TIGR03596 GTPase_YlqF ribosome 98.0 2.6E-05 5.6E-10 67.5 8.8 94 94-211 11-104 (276)
393 PF02263 GBP: Guanylate-bindin 98.0 2.5E-05 5.3E-10 66.9 8.5 105 19-129 20-128 (260)
394 COG0488 Uup ATPase components 98.0 9.7E-06 2.1E-10 75.8 6.2 27 19-45 28-54 (530)
395 KOG0466 Translation initiation 98.0 7.6E-06 1.7E-10 69.2 4.8 167 17-211 35-242 (466)
396 KOG1534 Putative transcription 98.0 1.2E-05 2.7E-10 64.5 5.6 89 70-163 98-190 (273)
397 cd01856 YlqF YlqF. Proteins o 98.0 3.6E-05 7.8E-10 61.6 7.8 94 93-210 8-101 (171)
398 COG1618 Predicted nucleotide k 97.9 0.00066 1.4E-08 52.6 13.9 116 20-149 5-141 (179)
399 cd01855 YqeH YqeH. YqeH is an 97.9 4.3E-05 9.3E-10 62.3 7.6 97 94-210 24-125 (190)
400 COG3640 CooC CO dehydrogenase 97.9 2.8E-05 6.2E-10 63.7 6.3 46 102-151 153-198 (255)
401 COG0541 Ffh Signal recognition 97.9 0.0014 3.1E-08 58.8 17.2 135 12-159 92-260 (451)
402 cd03114 ArgK-like The function 97.9 9E-05 2E-09 57.8 8.8 21 22-42 1-21 (148)
403 PF05783 DLIC: Dynein light in 97.9 0.0011 2.4E-08 61.2 16.7 62 139-210 197-264 (472)
404 PF06858 NOG1: Nucleolar GTP-b 97.9 7E-05 1.5E-09 47.2 6.0 43 104-149 13-58 (58)
405 PF09547 Spore_IV_A: Stage IV 97.9 0.00062 1.3E-08 60.8 14.1 190 17-226 14-253 (492)
406 KOG3887 Predicted small GTPase 97.8 0.00012 2.6E-09 60.2 8.9 124 20-153 27-150 (347)
407 PRK09563 rbgA GTPase YlqF; Rev 97.8 8.5E-05 1.8E-09 64.7 8.4 94 94-211 14-107 (287)
408 KOG0463 GTP-binding protein GP 97.8 8E-05 1.7E-09 64.9 7.9 138 19-178 132-306 (641)
409 smart00010 small_GTPase Small 97.8 0.00012 2.5E-09 54.9 7.9 23 21-43 1-23 (124)
410 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 6.1E-05 1.3E-09 58.2 6.0 51 100-153 7-57 (141)
411 COG0488 Uup ATPase components 97.8 2.6E-05 5.7E-10 72.9 4.2 46 19-64 347-392 (530)
412 COG0552 FtsY Signal recognitio 97.7 0.00044 9.4E-09 60.0 11.0 124 17-151 136-297 (340)
413 cd01849 YlqF_related_GTPase Yl 97.7 0.00012 2.6E-09 57.6 7.1 83 106-209 1-84 (155)
414 PRK13695 putative NTPase; Prov 97.7 0.00062 1.3E-08 54.6 11.4 22 22-43 2-23 (174)
415 PF05879 RHD3: Root hair defec 97.7 0.0051 1.1E-07 60.4 19.2 122 26-150 1-136 (742)
416 KOG0780 Signal recognition par 97.7 0.00015 3.3E-09 63.6 7.4 80 68-159 182-261 (483)
417 KOG1533 Predicted GTPase [Gene 97.7 9E-05 2E-09 60.6 5.6 79 70-153 97-178 (290)
418 TIGR01069 mutS2 MutS2 family p 97.7 0.0023 5.1E-08 63.0 16.4 24 20-43 322-345 (771)
419 cd02038 FleN-like FleN is a me 97.7 0.0015 3.2E-08 50.3 12.2 98 25-150 5-109 (139)
420 PRK10865 protein disaggregatio 97.7 0.019 4.1E-07 57.6 22.8 25 19-43 198-222 (857)
421 COG1116 TauB ABC-type nitrate/ 97.6 6E-05 1.3E-09 62.6 3.7 25 21-45 30-54 (248)
422 PF00004 AAA: ATPase family as 97.6 0.00023 4.9E-09 54.0 6.8 21 23-43 1-21 (132)
423 PRK12289 GTPase RsgA; Reviewed 97.5 0.00015 3.3E-09 64.5 5.9 84 102-206 87-171 (352)
424 PRK02224 chromosome segregatio 97.5 0.023 5E-07 57.5 22.1 21 21-41 24-44 (880)
425 cd03111 CpaE_like This protein 97.5 0.0028 6.1E-08 46.3 11.5 103 23-147 2-106 (106)
426 KOG0469 Elongation factor 2 [T 97.5 0.00018 3.9E-09 65.0 5.5 121 15-151 14-163 (842)
427 COG4988 CydD ABC-type transpor 97.5 0.0006 1.3E-08 63.2 9.0 125 17-144 344-480 (559)
428 TIGR00157 ribosome small subun 97.5 0.0011 2.3E-08 56.4 9.8 87 100-207 32-120 (245)
429 PRK00409 recombination and DNA 97.5 0.032 7E-07 55.3 21.2 22 20-41 327-348 (782)
430 PF13555 AAA_29: P-loop contai 97.5 0.00013 2.9E-09 47.2 3.2 20 22-41 25-44 (62)
431 COG3840 ThiQ ABC-type thiamine 97.5 0.0001 2.3E-09 58.2 3.2 26 20-45 25-50 (231)
432 KOG2203 GTP-binding protein [G 97.5 0.036 7.8E-07 51.2 19.6 131 16-152 33-173 (772)
433 TIGR03597 GTPase_YqeH ribosome 97.5 0.0007 1.5E-08 60.9 9.0 98 92-208 51-151 (360)
434 COG1136 SalX ABC-type antimicr 97.5 0.00011 2.4E-09 60.7 3.5 26 20-45 31-56 (226)
435 KOG4181 Uncharacterized conser 97.4 0.0032 7E-08 54.6 11.7 28 17-44 185-212 (491)
436 cd03229 ABC_Class3 This class 97.4 0.00087 1.9E-08 54.0 8.0 27 19-45 25-51 (178)
437 PF00005 ABC_tran: ABC transpo 97.4 0.00014 3.1E-09 55.7 3.2 25 21-45 12-36 (137)
438 cd00071 GMPK Guanosine monopho 97.4 0.0002 4.3E-09 55.1 3.8 21 23-43 2-22 (137)
439 TIGR02475 CobW cobalamin biosy 97.3 0.0021 4.5E-08 57.3 10.4 23 21-43 5-27 (341)
440 cd01983 Fer4_NifH The Fer4_Nif 97.3 0.0027 5.9E-08 44.9 9.3 68 23-115 2-69 (99)
441 KOG1707 Predicted Ras related/ 97.3 0.0045 9.8E-08 57.3 12.3 119 16-152 421-540 (625)
442 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.16 3.6E-06 49.5 23.3 21 20-40 28-48 (650)
443 cd02042 ParA ParA and ParB of 97.3 0.0071 1.5E-07 43.8 10.8 70 23-115 2-72 (104)
444 PF13207 AAA_17: AAA domain; P 97.2 0.00026 5.6E-09 53.0 3.1 22 22-43 1-22 (121)
445 COG0523 Putative GTPases (G3E 97.2 0.006 1.3E-07 53.7 11.9 74 71-153 86-160 (323)
446 TIGR00235 udk uridine kinase. 97.2 0.0003 6.6E-09 58.1 3.5 26 18-43 4-29 (207)
447 PRK11537 putative GTP-binding 97.2 0.0027 5.8E-08 56.0 9.4 24 20-43 4-27 (318)
448 cd00009 AAA The AAA+ (ATPases 97.2 0.0034 7.4E-08 47.9 9.2 25 20-44 19-43 (151)
449 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0004 8.7E-09 55.8 3.9 27 19-45 24-50 (177)
450 KOG0066 eIF2-interacting prote 97.2 0.0043 9.4E-08 55.7 10.5 25 21-45 614-638 (807)
451 cd03238 ABC_UvrA The excision 97.2 0.00037 8E-09 55.9 3.4 24 19-42 20-43 (176)
452 PRK10246 exonuclease subunit S 97.2 0.13 2.7E-06 53.1 22.3 24 19-42 29-52 (1047)
453 COG1126 GlnQ ABC-type polar am 97.2 0.00043 9.2E-09 56.3 3.7 26 20-45 28-53 (240)
454 COG3839 MalK ABC-type sugar tr 97.2 0.00038 8.3E-09 61.2 3.7 25 21-45 30-54 (338)
455 cd02036 MinD Bacterial cell di 97.1 0.007 1.5E-07 48.4 10.8 63 71-151 64-127 (179)
456 COG4525 TauB ABC-type taurine 97.1 0.00034 7.4E-09 56.0 2.9 24 21-44 32-55 (259)
457 cd01130 VirB11-like_ATPase Typ 97.1 0.00039 8.4E-09 56.5 3.2 25 20-44 25-49 (186)
458 PRK12288 GTPase RsgA; Reviewed 97.1 0.0034 7.4E-08 56.0 9.3 86 103-207 119-205 (347)
459 cd03264 ABC_drug_resistance_li 97.1 0.00045 9.7E-09 57.3 3.4 23 22-44 27-49 (211)
460 cd03225 ABC_cobalt_CbiO_domain 97.1 0.0006 1.3E-08 56.5 4.1 26 19-44 26-51 (211)
461 KOG0781 Signal recognition par 97.1 0.0026 5.5E-08 57.6 8.1 78 68-153 465-545 (587)
462 TIGR01166 cbiO cobalt transpor 97.1 0.00048 1.1E-08 56.1 3.3 24 21-44 19-42 (190)
463 PRK03918 chromosome segregatio 97.1 0.28 6.1E-06 49.7 23.7 20 22-41 25-44 (880)
464 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00071 1.5E-08 52.5 3.9 26 20-45 26-51 (144)
465 TIGR00960 3a0501s02 Type II (G 97.0 0.00057 1.2E-08 56.8 3.6 26 19-44 28-53 (216)
466 COG0194 Gmk Guanylate kinase [ 97.0 0.0003 6.5E-09 55.9 1.7 25 20-44 4-28 (191)
467 cd02019 NK Nucleoside/nucleoti 97.0 0.00059 1.3E-08 45.6 2.9 22 22-43 1-22 (69)
468 cd03261 ABC_Org_Solvent_Resist 97.0 0.00068 1.5E-08 57.2 4.0 25 20-44 26-50 (235)
469 PRK15177 Vi polysaccharide exp 97.0 0.00073 1.6E-08 56.1 4.1 26 20-45 13-38 (213)
470 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.0007 1.5E-08 56.4 4.0 26 19-44 29-54 (218)
471 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00064 1.4E-08 56.7 3.7 25 20-44 30-54 (220)
472 TIGR02673 FtsE cell division A 97.0 0.00074 1.6E-08 56.0 4.0 26 19-44 27-52 (214)
473 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00073 1.6E-08 55.7 3.9 26 19-44 25-50 (205)
474 PRK01156 chromosome segregatio 97.0 0.32 7E-06 49.4 23.5 21 21-41 24-44 (895)
475 cd03265 ABC_DrrA DrrA is the A 97.0 0.00076 1.7E-08 56.3 4.1 26 19-44 25-50 (220)
476 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00065 1.4E-08 56.3 3.6 26 19-44 25-50 (213)
477 TIGR03608 L_ocin_972_ABC putat 97.0 0.00068 1.5E-08 55.9 3.7 25 20-44 24-48 (206)
478 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00054 1.2E-08 57.7 3.1 23 21-43 31-53 (254)
479 cd03216 ABC_Carb_Monos_I This 97.0 0.00082 1.8E-08 53.3 4.0 26 19-44 25-50 (163)
480 PRK07261 topology modulation p 97.0 0.00057 1.2E-08 54.7 3.1 22 22-43 2-23 (171)
481 PF13671 AAA_33: AAA domain; P 97.0 0.00055 1.2E-08 52.8 2.9 21 23-43 2-22 (143)
482 COG1120 FepC ABC-type cobalami 97.0 0.00068 1.5E-08 57.3 3.6 25 20-44 28-52 (258)
483 cd03260 ABC_PstB_phosphate_tra 97.0 0.00065 1.4E-08 57.0 3.5 26 19-44 25-50 (227)
484 KOG0996 Structural maintenance 97.0 0.078 1.7E-06 53.0 17.7 26 16-42 105-130 (1293)
485 cd03259 ABC_Carb_Solutes_like 97.0 0.00083 1.8E-08 55.7 4.0 25 20-44 26-50 (213)
486 PRK14738 gmk guanylate kinase; 97.0 0.001 2.2E-08 54.9 4.5 25 19-43 12-36 (206)
487 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00084 1.8E-08 48.8 3.4 22 20-41 15-36 (107)
488 cd03257 ABC_NikE_OppD_transpor 97.0 0.00076 1.7E-08 56.5 3.7 26 19-44 30-55 (228)
489 PRK05480 uridine/cytidine kina 97.0 0.00069 1.5E-08 56.1 3.4 25 19-43 5-29 (209)
490 KOG0057 Mitochondrial Fe/S clu 97.0 0.0052 1.1E-07 56.7 9.2 25 19-43 377-401 (591)
491 TIGR00606 rad50 rad50. This fa 97.0 0.37 8.1E-06 51.0 24.1 22 20-41 28-49 (1311)
492 cd03292 ABC_FtsE_transporter F 97.0 0.00086 1.9E-08 55.7 4.0 25 20-44 27-51 (214)
493 PHA02518 ParA-like protein; Pr 97.0 0.052 1.1E-06 44.7 14.7 68 69-150 76-145 (211)
494 TIGR02211 LolD_lipo_ex lipopro 97.0 0.00089 1.9E-08 55.9 4.1 27 19-45 30-56 (221)
495 PRK10078 ribose 1,5-bisphospho 97.0 0.00068 1.5E-08 55.0 3.2 24 21-44 3-26 (186)
496 PRK13540 cytochrome c biogenes 97.0 0.00092 2E-08 54.9 4.0 27 19-45 26-52 (200)
497 cd03269 ABC_putative_ATPase Th 97.0 0.00092 2E-08 55.3 4.0 26 19-44 25-50 (210)
498 cd02032 Bchl_like This family 97.0 0.0079 1.7E-07 51.8 10.0 68 70-150 116-184 (267)
499 TIGR03345 VI_ClpV1 type VI sec 96.9 0.35 7.6E-06 48.7 22.5 25 19-43 207-231 (852)
500 cd03224 ABC_TM1139_LivF_branch 96.9 0.00095 2.1E-08 55.7 4.1 26 19-44 25-50 (222)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=3.9e-35 Score=243.38 Aligned_cols=202 Identities=43% Similarity=0.752 Sum_probs=172.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+|+|.+|+||||++|+|+|...+.+..+..++|..+..+...+ .++.++|||||||.|+....+++.+.+..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888877788999999998888 999999999999999888888888999999988
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
..+++|+||||++.+ +++..+...++.+.++||+++.++++||+|.+|...+ ..+++++....+..++.++..|+.+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 899999999999999 9999999999999999999999999999999999888 6688888854456789999999999
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
|+.|++..........++.+|++.|..++.++++.+|+.+++.+++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~ 202 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAE 202 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Confidence 9999998555556678999999999999999999999999988887
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=1.1e-34 Score=238.60 Aligned_cols=195 Identities=51% Similarity=0.841 Sum_probs=176.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|...+.+.....++|..+..+...+ .++.+.||||||+.++....+.+...+..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988777666778999999998888 899999999999999877667778888888888
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+.+++|+||||+|++ +++..+...++.+++.||....+++++|+|++|.+.. ..+++++.. ....++.++..|+.+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 889999999999998 4999999999999999999888899999999999987 788999886 557899999999999
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI 221 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~ 221 (311)
++.|++... ++..+.++.+|++.|.++++++++++|+.++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999987 7788999999999999999999999998764
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=193.65 Aligned_cols=181 Identities=18% Similarity=0.291 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
-..|+++|.||+|||||+|+|+|... +..++...|+......+...++.++.++||||+..+ ...+.+.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 37899999999999999999999998 556666677777777766657889999999999865 4556777888888
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc-HHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|+++||+|+++.+...+..+++.+++ ...|+++++||+|...+ .. +...... +..
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~--~~~l~~~~~~-----~~~------ 142 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKP--KTVLLKLIAF-----LKK------ 142 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCc--HHHHHHHHHH-----HHh------
Confidence 88999999999999998899999999999887 12499999999998877 33 2222221 111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
.+.|....+.||.++.+++.|++.+...+++ +..+|+.+++.+..
T Consensus 143 --~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~itD~~ 187 (298)
T COG1159 143 --LLPFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQITDRP 187 (298)
T ss_pred --hCCcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhccCCh
Confidence 1233344558999999999999999999976 78889999888877
No 4
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=8.4e-26 Score=175.51 Aligned_cols=156 Identities=20% Similarity=0.270 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|... ...+++|+|.......+.+ .+..+.+|||||+++...... .+.+.... .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~--ee~v~~~~-l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE--EERVARDY-L 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH--HHHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc--HHHHHHHH-H
Confidence 4799999999999999999999995 4567899999999999988 889999999999988654332 22232221 1
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|++++|+|++ .+..+ ..++..+.++ | .|+++++||+|.+...+..++ ...+-...+.+
T Consensus 75 ~~~~~D~ii~VvDa~-~l~r~-l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLERN-LYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHHHH-HHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHHHH-HHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 246799999999998 55443 3444455542 3 599999999998865333332 34455556888
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLV 205 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i 205 (311)
+++ .||.++.|+++|++.|
T Consensus 138 vi~------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIP------VSARTGEGIDELKDAI 156 (156)
T ss_dssp EEE------EBTTTTBTHHHHHHHH
T ss_pred EEE------EEeCCCcCHHHHHhhC
Confidence 887 6888889999999875
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=6.3e-23 Score=180.53 Aligned_cols=161 Identities=23% Similarity=0.307 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
+.|+++|.||+|||||+|+|+|..... ....+|+|++-.+....| .+..+.+|||+|+.+ ...+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI-V~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~--~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI-VSDTPGVTRDRIYGDAEW-LGREFILIDTGGLDD--GDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE-eecCCCCccCCccceeEE-cCceEEEEECCCCCc--CCchHHHHHHHHHHHH
Confidence 689999999999999999999988633 345789999999999999 899999999999987 3346678888888888
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++..+|++|||+|+..+++..|..+.+.|+.. .+|+++|+||+|..... ....+| .. .|
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~ef------------ys-lG-- 138 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAYEF------------YS-LG-- 138 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHHHH------------Hh-cC--
Confidence 88999999999999989999999999999842 25999999999976330 111111 11 12
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
|.....+||.++.|+.+|++.+...+
T Consensus 139 ---~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 139 ---FGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ---CCCceEeehhhccCHHHHHHHHHhhc
Confidence 22222379999999999999999987
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=4.9e-23 Score=177.39 Aligned_cols=177 Identities=16% Similarity=0.225 Sum_probs=119.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.||+|||||+|+|+|.....+ ...+++|... ...+...++..+.+|||||+.+.. ..+...+...+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v-s~~~~TTr~~-i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT-SPKAQTTRNR-ISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec-CCCCCcccCc-EEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 689999999999999999999875221 2234455543 333433356789999999988642 22334444445566
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
+..+|+++||+|++...+.. ..++..+.. . ..|+++|+||+|+... ..+.+.. ..+....+. .
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~----~~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~~~ 140 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-L----KRPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDFKD 140 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHh-c----CCCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCCCc
Confidence 78899999999998544433 445555544 2 3599999999998744 3332222 222222221 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+++ +||.++.|+++|++.|.+.+++ +.+.|+.++..+..
T Consensus 141 v~~------iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 141 IVP------ISALTGDNTSFLAAFIEVHLPE-GPFRYPEDYVTDQP 179 (270)
T ss_pred eEE------EecCCCCCHHHHHHHHHHhCCC-CCCCCCCcccCCCC
Confidence 343 7999999999999999999865 56678877766654
No 7
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.90 E-value=1.9e-22 Score=172.17 Aligned_cols=191 Identities=23% Similarity=0.312 Sum_probs=135.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+......++|+|+|.+|+|||||+|+|+|...+.+.. ..+.|.......... .+..+.||||||+.+.....+...+.
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHH
Confidence 4456678999999999999999999999988643322 233344444444455 78999999999999864333333322
Q ss_pred HHHHHHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+..++ ...++|+||||.+.+ .+++..+..+++.+++.||.+..+++|+|+|++|...+++.++++|+.+ ....++.
T Consensus 110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 124799999997665 4788889999999999999999999999999999886666889999986 7777888
Q ss_pred HHHhcC-----------CcEEEecCCchhhhhhHHH----------HHHHHHHHHHHHH
Q 021534 173 ILQLCD-----------NRCVLFDNKTKDAAKRTEQ----------VGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~-----------~~~~~f~~~~~~sa~~~~~----------i~~l~~~i~~~~~ 210 (311)
++..+. .++.+..|+..+.. ...| +..|+..|.++..
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~-n~~ge~vlp~g~~w~~~l~~~~~~~~~ 244 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKK-NESDEKILPDGTPWIPKLMKEITEVIS 244 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccC-CCCCCeECCCCCccHHHHHHHHHHHHh
Confidence 777542 23344455433321 1111 6778888887764
No 8
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.8e-22 Score=183.21 Aligned_cols=177 Identities=18% Similarity=0.270 Sum_probs=137.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|+||+|||||+|+|+|.+. ...+++|+|++.....+.. .+..+.++|+||.++....+ ..+.+++-.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S--~DE~Var~~- 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS--EDEKVARDF- 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC--chHHHHHHH-
Confidence 36799999999999999999999998 6678999999999999999 88899999999999865432 223333221
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.....+|+++.|+|++ .+..+-+.+++.+. +| .|+++++|++|..+..+-.++ ...+-+..|.
T Consensus 77 ll~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g----~p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv 139 (653)
T COG0370 77 LLEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LG----IPMILALNMIDEAKKRGIRID----------IEKLSKLLGV 139 (653)
T ss_pred HhcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cC----CCeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence 2246789999999999 88888877777665 33 489999999998866434443 4566677799
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
++++ ++|.++.|++++++.+.+....+.. .+..++.++++
T Consensus 140 PVv~------tvA~~g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie 179 (653)
T COG0370 140 PVVP------TVAKRGEGLEELKRAIIELAESKTT-PREVDYGEEIE 179 (653)
T ss_pred CEEE------EEeecCCCHHHHHHHHHHhcccccc-ccccccchHHH
Confidence 9988 8889999999999999987765443 44344444443
No 9
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.89 E-value=3.3e-21 Score=164.94 Aligned_cols=155 Identities=22% Similarity=0.314 Sum_probs=114.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCCChHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK----A--GSSGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----~--~~~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~~~~~ 89 (311)
-.++|+++|++|.|||||||+|++....... . .....|..+..+...+..+. +++++|||||+|.-.. ..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cc
Confidence 4589999999999999999999998532221 1 11235666666666553322 8999999999997433 44
Q ss_pred HHHHHHHHHH----hc--------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 90 VSKEIVKCIG----MA--------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 90 ~~~~~~~~~~----~~--------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
.++.+...+. .+ ..++||+||++..+ +.+++.|..+|+.|.+.+ ++|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeecccc
Confidence 4444443332 11 25689999999865 899999999999988764 89999999999
Q ss_pred CCCChhcHHHHhhhcCCchHHHHHHhcCCcEE-EecCC
Q 021534 151 LEDNDETLEDYLGRECPKPLKEILQLCDNRCV-LFDNK 187 (311)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~ 187 (311)
+.. ..+..+... +...+..+..++| +|++.
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~pyd~e 205 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFDPYDPE 205 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeCCCCcc
Confidence 988 888888776 8888898888887 45544
No 10
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.89 E-value=1.3e-21 Score=179.56 Aligned_cols=165 Identities=22% Similarity=0.289 Sum_probs=124.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..-.++|+|+|.||+|||||+|+|+|...+.+....+ .|+.+......+ .+..+.||||||+.++.... .....+..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk 191 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILS 191 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHH
Confidence 3445899999999999999999999998766544333 455555555555 78899999999999975433 22333333
Q ss_pred HHHhc--cCCccEEEEEEECCC-CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-----hcHHHHhhhcCCc
Q 021534 97 CIGMA--KDGIHAVLLVFSIRN-RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND-----ETLEDYLGRECPK 168 (311)
Q Consensus 97 ~~~~~--~~~~d~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-----~~~~~~~~~~~~~ 168 (311)
.+..+ ..++|+||||++.+. +....+..+++.+.++||.++++++|||+|++|.+.+++ .++++|+.. +..
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~ 270 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH 270 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence 33222 246899999998762 233367789999999999999999999999999996532 579999986 788
Q ss_pred hHHHHHHhcCCcEEEec
Q 021534 169 PLKEILQLCDNRCVLFD 185 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (311)
.++.++..|..++..|+
T Consensus 271 ~Lq~~Irq~~g~~~l~n 287 (763)
T TIGR00993 271 IVQQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHHHhcCcceecc
Confidence 89999999988666554
No 11
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=6.4e-22 Score=172.73 Aligned_cols=180 Identities=19% Similarity=0.317 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|+|..... .++...|+......+...++..+.+|||||+.+.. ..+.+.+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 689999999999999999999987632 23333333333333333255789999999998643 2333444555555
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-C
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-N 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 179 (311)
++..+|+++||+|++++++..+..++..+.. ...|+++|+||+|+.... ..+...+.. +....+ .
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~~~ 146 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVKDK-EELLPLLEE--------LSELMDFA 146 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCCCC
Confidence 6788999999999986677777777766653 125999999999987331 333332222 222212 2
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
.+++ .|+.++.|+++|++.+...+++ +.+.|+.++..+..
T Consensus 147 ~i~~------iSA~~~~gv~~L~~~L~~~l~~-~~~~y~~~~~td~~ 186 (292)
T PRK00089 147 EIVP------ISALKGDNVDELLDVIAKYLPE-GPPYYPEDQITDRP 186 (292)
T ss_pred eEEE------ecCCCCCCHHHHHHHHHHhCCC-CCCCCCCCCCCCCC
Confidence 3333 7888899999999999998865 55678777655544
No 12
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=153.52 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=123.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
|.+..+-|+++|.+|+|||||||+|+|...+...+..+|.|.....+.+.. .+.+||.||++....+. +..+.+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k-~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPK-EVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCH-HHHHHHH
Confidence 445678999999999999999999999876556667889999888877532 38899999999887665 3333333
Q ss_pred HHHHhcc---CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAK---DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~---~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++ ....+++.++|+.+.+...|.+.++++... ..|+++|+||+|.+.. ......+.. +.+
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~--~~~~k~l~~-----v~~ 162 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKK--SERNKQLNK-----VAE 162 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence 3333332 237899999999999999999999999874 2489999999999976 333322222 222
Q ss_pred HHHh-cCCc--EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQL-CDNR--CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~-~~~~--~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.. .... +.. .|+..+.|+++|...|.+.+.
T Consensus 163 ~l~~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 163 ELKKPPPDDQWVVL------FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HhcCCCCccceEEE------EecccccCHHHHHHHHHHHhh
Confidence 2211 1222 333 355567889999999987764
No 13
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=1.5e-21 Score=172.84 Aligned_cols=179 Identities=22% Similarity=0.275 Sum_probs=125.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.+|+|||||+|+|+|..... ....+++|.......+.+ ++.++.+|||||+.+... .+...+....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~ 125 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCA 125 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHH
Confidence 44699999999999999999999987522 122345555555555566 788999999999865322 2333444444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++|||+|....+...+..++..+... ..|.++|+||+|+... .+.+ +...+....
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIESK---YLND---------IKAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCccc---cHHH---------HHHHHHhcC
Confidence 4557889999999998867777766677666542 2377889999997533 1221 222222222
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
..+++ +||.++.|+++|+++|...+++ +.+.|+.++..+..
T Consensus 189 ~~~~i~~------iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~td~~ 231 (339)
T PRK15494 189 PDSLLFP------ISALSGKNIDGLLEYITSKAKI-SPWLYAEDDITDLP 231 (339)
T ss_pred CCcEEEE------EeccCccCHHHHHHHHHHhCCC-CCCCCCCCCCCCCC
Confidence 23444 7899999999999999998876 77889988877765
No 14
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.87 E-value=3e-21 Score=162.88 Aligned_cols=134 Identities=26% Similarity=0.320 Sum_probs=104.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---hHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD---PEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~---~~~~~~ 92 (311)
..+..++|+|+|.+|+|||||+|+|+|...+.+. ...+.|..+..+...+ .+..++||||||+.++... .+.+..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~ 104 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILS 104 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence 4556799999999999999999999998865443 3446677777777777 8889999999999986421 122333
Q ss_pred HHHHHHHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..++. ..++|+++||..++ .+++..+..+++.+.+.+|.+...++++|+||+|...+
T Consensus 105 ~I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 105 SIKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 3333322 23689999998776 57888889999999999999888999999999998855
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=5.3e-21 Score=168.46 Aligned_cols=175 Identities=22% Similarity=0.281 Sum_probs=129.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.||+|||||+|+|+|+....+ ...+|+|.+.....+++ +++.+.+|||.|+-.-..-.+.+...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv-~~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIV-SDIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEe-cCCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 469999999999999999999999986433 34578999999999998 9999999999998643221111111001111
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++++|+|++.+++..|..+...+.+. .+++++|+||||+++.+....+++... +...+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 2335667999999999999999999999888873 358999999999987643555555443 454444433
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+ ..||.++.++..+++.+......
T Consensus 325 ~a~i~------~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 325 FAPIV------FISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred CCeEE------EEEecCCCChHHHHHHHHHHHHH
Confidence 2333 37999999999999999887754
No 16
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=1.5e-20 Score=150.69 Aligned_cols=163 Identities=23% Similarity=0.232 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE-FVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~-~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|+|++.... ....++.|.......+.+ .+..+.||||||+.+...... .+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence 57999999999999999999997642 222344566666666655 678999999999865322111 1111111111
Q ss_pred hccCCccEEEEEEECCCCCC---hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRFS---KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+|++|||+|++++.+ .....++..+...+. ..|+++|+||+|+... ..+.. . ..+...
T Consensus 77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~--------~~~~~~ 140 (168)
T cd01897 77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-I--------EEEEEL 140 (168)
T ss_pred --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-H--------HHhhhh
Confidence 123589999999984432 222345555655432 3599999999998755 33332 1 112222
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +||.++.|++++++++.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEVLK------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCceEE------EEecccCCHHHHHHHHHHHh
Confidence 2333444 78999999999999988754
No 17
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=3.5e-20 Score=147.71 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+++|.+|+|||||+|+|++...-.. .....+.|.......+.+..+..+.+|||||..+ +......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 689999999999999999998542111 1112456666666666662277999999999532 2233334
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh---c
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL---C 177 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 177 (311)
++.++|++++|+|+++.........+..+.. .+. +|+++++||+|+... ......... +...+.. .
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~~ 139 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFLA 139 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCcC
Confidence 5678999999999985444444444444433 221 489999999998654 222222221 3333333 2
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+.++++ +|+.++.|++++++.+..
T Consensus 140 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 140 DAPIFP------VSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCcEEE------EeCCCCcCHHHHHHHHhh
Confidence 334444 788889999999988754
No 18
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=2.7e-20 Score=149.41 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ-VVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
+|+++|.+|+|||||+|+|++... .....++.|.......+.+ .+. .+.+|||||+.+.......+...+ ..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~----~~ 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRF----LR 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHH----HH
Confidence 589999999999999999998764 2222334455555555555 555 899999999864321111122222 22
Q ss_pred ccCCccEEEEEEECCCC-CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc-
Q 021534 101 AKDGIHAVLLVFSIRNR-FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC- 177 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (311)
.+..+|++++|+|++++ -+... ..+.+.+......-...|+++|+||+|+... ....+.. ..+....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~--------~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELL--------KELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHH--------HHHHhhCC
Confidence 23467999999999844 12222 3445555554322234699999999998755 3333322 2223332
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +|++++.|+.++++++.++
T Consensus 145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFP------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence 334444 6888889999999988754
No 19
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=5.4e-20 Score=149.08 Aligned_cols=161 Identities=19% Similarity=0.296 Sum_probs=103.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.|....++|+++|.+|+|||||+|+|++...........++|..+..+.+ + ..+.+|||||++........ ...+
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~ 87 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKW 87 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHH
Confidence 35578899999999999999999999987532222334556666655443 2 47999999998765332211 1222
Q ss_pred HHHHHh---ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 95 VKCIGM---AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 95 ~~~~~~---~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
...+.. ....+|+++||+|++++++..+..++..+... ..|+++|+||+|+... ......... +.
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~--~~~~~~~~~-----i~ 155 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK--SELNKQLKK-----IK 155 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH--HHHHHHHHH-----HH
Confidence 222222 22356899999999878888887776666542 3589999999998754 333333332 44
Q ss_pred HHHHhcC--CcEEEecCCchhhhhhHHHH
Q 021534 172 EILQLCD--NRCVLFDNKTKDAAKRTEQV 198 (311)
Q Consensus 172 ~~~~~~~--~~~~~f~~~~~~sa~~~~~i 198 (311)
..+...+ .++++ +||.++.|+
T Consensus 156 ~~l~~~~~~~~v~~------~Sa~~g~gi 178 (179)
T TIGR03598 156 KALKKDADDPSVQL------FSSLKKTGI 178 (179)
T ss_pred HHHhhccCCCceEE------EECCCCCCC
Confidence 4454433 24555 566666554
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=8.6e-20 Score=163.54 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=120.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
.|+|+|.||||||||+|+|++... .....+.+|.......+.+.+++.+.|+||||+.........+...+.. .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 799999999999999999999875 3344567787877777777334679999999997642222223333332 3
Q ss_pred cCCccEEEEEEECCC---C-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 102 KDGIHAVLLVFSIRN---R-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 102 ~~~~d~il~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..+|++++|+|++. . .......+++.+......-..+|+++|+||+|+... ..+.+.+. .+....
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~~~ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVEAL 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHHHh
Confidence 567799999999871 1 112224455555543221123699999999998654 33333222 222322
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+ ..+++ +||.++.++.+|++.|.+.+++ ....|+.++..+..
T Consensus 305 ~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~td~~ 348 (390)
T PRK12298 305 GWEGPVYL------ISAASGLGVKELCWDLMTFIEE-NPREEAEEAEAPEK 348 (390)
T ss_pred CCCCCEEE------EECCCCcCHHHHHHHHHHHhhh-CcccCCcccccCcc
Confidence 2 23444 6888899999999999999876 45667776655443
No 21
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=5.4e-20 Score=163.07 Aligned_cols=162 Identities=23% Similarity=0.229 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.||+|||||+|+|++...+. ...+++|.+.....+.+.++..+.||||||+... ......+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v--~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYA--ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceee--ccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence 45899999999999999999999987532 3345667777777777745679999999998531 1222334444433
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+..+|++|+|+|++++...... .+...+... +. ...|+++|+||+|+... ..+.. ... .
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~-~ 325 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEE-G 325 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHh-C
Confidence 236788999999999866554443 233444443 21 23599999999998644 22211 001 1
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+++. +||.++.|+++|++.|.+.
T Consensus 326 ~~~~i~------iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVF------VSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEE------EEccCCCCHHHHHHHHHhh
Confidence 122333 7889999999999998754
No 22
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=2e-19 Score=147.91 Aligned_cols=173 Identities=17% Similarity=0.337 Sum_probs=111.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+.+..++|+++|.+|+|||||+|+|++...........++|..+..+. .+..+.||||||+........ ....+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~ 94 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQ 94 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHH
Confidence 344668999999999999999999999753223233445665554433 246899999999875432221 122222
Q ss_pred HHHH---hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIG---MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~---~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.... .....++++++|+|++.+.+..+..++..+.. . ..|+++++||+|+... ......... +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~ 162 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLKK--GERKKQLKK-----VRK 162 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCCH--HHHHHHHHH-----HHH
Confidence 2222 22345678999999886777666556655543 2 2489999999998755 333332222 333
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+......+++ +|+.++.|++++++.|.+++.+
T Consensus 163 ~l~~~~~~~~~------~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 163 ALKFGDDEVIL------FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHhcCCceEE------EEcCCCCCHHHHHHHHHHHhcC
Confidence 33332334444 6888899999999999887743
No 23
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.84 E-value=7.9e-20 Score=137.32 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=84.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+|+|.+|+|||||+|+|++....... ..+++|.......+.+ .+..+.|+||||+.+........ ..+...+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~- 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQ- 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHH-
Confidence 6899999999999999999997543333 3467777776666677 88899999999998753322211 223334433
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
+..+|+++||+|++++.+..+..+++.++ . .+|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence 37889999999987655555667777773 2 3599999998
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=1.3e-19 Score=145.61 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|+|||||+|+|++....... ..+++|.......+.. .+..+.+|||||+.+.......+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-DIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-CCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 478999999999999999999997643222 2345555555555555 77789999999988653221111111111122
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc-C
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-D 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 178 (311)
..+.++|++++|+|++++.+.....++..+.. ...|+++++||+|+.............. +...+... .
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 34568899999999987776655555544433 1259999999999875521222222221 22222211 1
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.++++ +|+.++.|+.++++.+..+
T Consensus 150 ~~~~~------~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVF------ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEE------EeccCCCCHHHHHHHHHHh
Confidence 23333 7888889999999888653
No 25
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=6.5e-20 Score=145.00 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=108.0
Q ss_pred EEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 021534 24 VLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKD 103 (311)
Q Consensus 24 ~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (311)
+++|.+|+|||||+|+|++...... ...+++|.........+ .+..+.+|||||+.+... .+...+.......+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 5799999999999999999764222 23456676666667776 788999999999987432 233334444445567
Q ss_pred CccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-cEE
Q 021534 104 GIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-RCV 182 (311)
Q Consensus 104 ~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (311)
.+|+++||+|+.++.+..+..+...++.. ..|+++|+||+|.... .... . .+...+. +++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~--~~~~-----------~-~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE--EDEA-----------A-EFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh--HHHH-----------H-HHHhcCCCCeE
Confidence 78999999999877766666666666542 2599999999998755 2221 0 1111222 333
Q ss_pred EecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 183 LFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 183 ~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
. +|+.++.|++++++++.+.
T Consensus 137 ~------~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 P------ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred E------EecccCCCHHHHHHHHHhh
Confidence 3 6788889999999998753
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=2.1e-19 Score=165.31 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+.+.....+.+.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHH
Confidence 3458999999999999999999999874322 23456777766666666 788999999999876433222222211112
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++++++..+..++..+.+. ..|+++|+||||+... .....+.... +...+...
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~ 316 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL 316 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence 22356788999999999988888887777666542 2599999999998722 1333333222 33222222
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+ .++++ +||.++.|+.++++.+......
T Consensus 317 ~~~~vi~------~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 317 DFAPIVF------ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCceEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 2 33443 7999999999999999887654
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=2.9e-19 Score=164.51 Aligned_cols=174 Identities=21% Similarity=0.260 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|++|+|||||+|+|+|...... ...+++|.......+.+ .+..+.+|||||+.........+.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3569999999999999999999999875333 23456777776666666 788999999999876433222222211122
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++.+.+..+..++..+.+. .+|+++|+||||+... ....+.... +...+...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~ 316 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL 316 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc
Confidence 22346778999999999988888887777666542 2589999999998744 333332222 22222221
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++++ +||.++.|+.++++.+.+....
T Consensus 317 ~~~~i~~------~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 317 DYAPIVF------ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred cCCCEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 233333 7889999999999999887654
No 28
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.8e-20 Score=154.16 Aligned_cols=132 Identities=24% Similarity=0.240 Sum_probs=102.8
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
++|+-....++|+|+|.||+|||||++.|++... ...+.+.+|..+.+.+++. ++.++++|||||+.|-.. ++.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl--~ErN 234 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL--EERN 234 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCCh--HHhc
Confidence 5667777889999999999999999999999986 6667788999999999988 888999999999998433 2222
Q ss_pred HHHHHHHHhccCC-ccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGMAKDG-IHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~~~~~-~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.|....-.++.. .++|+|++|.+ ..++.++ ..++..++..|. .|+++|+||+|..+.
T Consensus 235 -~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 235 -EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred -HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 233333222322 48999999998 4566555 677778888775 499999999998865
No 29
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=5.7e-19 Score=156.13 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=121.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+++|.||+|||||+|+|++.+...+ +.-+|+|+++-...+.+ +|.++.|+||.|+.++. +.+.+.=..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iGIe 288 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIGIE 288 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHHHH
Confidence 34569999999999999999999999986433 33579999999999999 99999999999998753 333333333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
........+|.++||+|++.+++..+...+..+. ..+|+++|.||.|+... ...... .+..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~--~~~~~~----------~~~~- 349 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIELLP------KKKPIIVVLNKADLVSK--IELESE----------KLAN- 349 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc------cCCCEEEEEechhcccc--cccchh----------hccC-
Confidence 3344567889999999999767777777666111 23589999999998866 221110 0000
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+. .|++++.|++.|.+.|.+++..
T Consensus 350 -~~~~i~------iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 350 -GDAIIS------ISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred -CCceEE------EEecCccCHHHHHHHHHHHHhh
Confidence 222333 6888999999999999998855
No 30
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=7.8e-19 Score=169.25 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=116.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~ 97 (311)
.++|+++|+||||||||+|+|+|... ...+++|+|.+.....+.+ ++..+.+|||||+++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 37899999999999999999999876 3456788999888888777 78899999999998764321 1222333222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
......+|++++|+|++ .+.... .+...+.+. ..|+++++||+|..+. ..+.. +...+.+..
T Consensus 80 -~l~~~~aD~vI~VvDat-~ler~l-~l~~ql~e~-----giPvIvVlNK~Dl~~~--~~i~i--------d~~~L~~~L 141 (772)
T PRK09554 80 -YILSGDADLLINVVDAS-NLERNL-YLTLQLLEL-----GIPCIVALNMLDIAEK--QNIRI--------DIDALSARL 141 (772)
T ss_pred -HHhccCCCEEEEEecCC-cchhhH-HHHHHHHHc-----CCCEEEEEEchhhhhc--cCcHH--------HHHHHHHHh
Confidence 22345789999999998 444332 333344432 3599999999997754 22211 134444556
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.++++ .|+.++.|++++.+.+.+...
T Consensus 142 G~pVvp------iSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 142 GCPVIP------LVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCEEE------EEeecCCCHHHHHHHHHHhhh
Confidence 777776 678888999999999988754
No 31
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=2.8e-19 Score=157.22 Aligned_cols=170 Identities=17% Similarity=0.144 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|++... .....+++|.......+.+.++..+++|||||+.........+...+. .
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~fl----r 232 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFL----K 232 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHH----H
Confidence 5689999999999999999998764 334456778888777777745678999999999753222222333332 2
Q ss_pred ccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.+..++++|||+|+++.-+..+ ..+...+......-..+|+++|+||+|+... ....... +.......+.
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~~ 303 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALGG 303 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcCC
Confidence 3566799999999984333333 3344455543221124699999999998754 2222110 1122233344
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.++++|+++|.+.+.+
T Consensus 304 ~i~~------iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFL------ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHHHh
Confidence 5555 7888999999999999987754
No 32
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=1.8e-19 Score=142.40 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|++|+|||||+|++++..... ....+++|.......+.+ .+..+.+|||||+.+...... .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAI-VSDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEe-ccCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 589999999999999999999876422 223456666666666666 678999999999987543211 111112223
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
.+..+|++++|+|++++.+..+...+.. . ...|+++|+||+|+... ... ....++.+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---P----ADKPIIVVLNKSDLLPD--SEL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---h----cCCCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence 4568899999999996666655544433 1 23599999999998755 211 11222445
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
++. .|+.++.|+.+++++|...+
T Consensus 134 ~~~------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIA------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEE------EECCCCCCHHHHHHHHHHhh
Confidence 555 67788899999999987654
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.83 E-value=1.8e-19 Score=149.07 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=105.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++.++|+|+|++|||||||+|++++...... .....|.......+.+.+...+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 4558999999999999999999999764222 22344555555555552334899999999865321 2222333333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+..+|++++|+|++++....+. .+...+...... ..|+++|+||+|+... .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 235678999999999855444432 334455443222 3599999999998755 2222 11111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...+++. +|+.++.|+.+++++|...
T Consensus 178 ~~~~~~~------~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAVF------ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceEE------EEcCCCCCHHHHHHHHHhh
Confidence 2334444 7888899999999988653
No 34
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.6e-19 Score=152.20 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMS-----KAGSSGVTKTCEMQRTMLKAG---QVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----~~~~~~~T~~~~~~~~~~~~~---~~l~liDTPG~~~~~~~~~~~~ 91 (311)
.+++.++|.+|.|||||||+|++.+.... ....+..|..+......+..+ .+++|+|||||+|.... ...+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn-s~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN-SNCW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc-cccc
Confidence 38999999999999999999998854321 111223356666666665332 28999999999997543 2222
Q ss_pred HHHHHHH----Hhc-------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCI----GMA-------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~----~~~-------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.+...+ ..+ ...+||+||++..+ +++.+.|..+++.+...+ ++|.|+.|+|.+.+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCCH
Confidence 2222222 111 13689999999765 789999999999888654 89999999999988
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
..+..+... +...+..+..+++.|....
T Consensus 174 --~El~~~K~~-----I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 174 --DELNQFKKR-----IRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred --HHHHHHHHH-----HHHHHHHcCcceecCCCCc
Confidence 788877776 7888888888888877664
No 35
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=2.9e-19 Score=142.89 Aligned_cols=161 Identities=15% Similarity=0.121 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+|+|.+|+|||||+|++++..... ...+..+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 489999999999999999999887522 112222222223333331 234788999999532 333344
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC---CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK---KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+++.+|++|+|+|++++-+... ..++..+.+...+ ....|+++|.||+|+.........+ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 55788999999999985433222 3555566555442 1346999999999986331011111 222334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +|+.++.|+.+++++|.+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44545554 68888999999999987643
No 36
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=2.2e-19 Score=143.07 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=105.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.+|+|||||+|+++|....... .....+.......+.. .+..+.+|||||+.+..... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 478999999999999999999998653222 2223333333333333 55789999999988643221 122333444
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD- 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (311)
..+..+|+++||+|++++.+..+..+...+... ..|+++|+||+|+.... ..+.+.... +....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence 557788999999999966666666666666543 24899999999987321 333333222 222211
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+++. .|+.++.+++++++.|.+.
T Consensus 144 ~~~~~------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFP------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEE------EEeccCCChHHHHHHHHhh
Confidence 23333 5677788999999988764
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7e-19 Score=162.85 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=116.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC- 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~- 97 (311)
..++|+++|.+|+|||||+|+|++..... ....+++|.......+.+ ++..+.||||||+........ ..+.+...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~-~s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV-VDDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQAS-GHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccc-hHHHHHHHH
Confidence 46899999999999999999999987422 233567777776666777 788999999999854211110 01112111
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh-
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL- 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (311)
...++..+|++++|+|++++.+..+..++..+.. ...|+++|+||||+... ......... +...+..
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~~ 354 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQV 354 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh--hHHHHHHHH-----HHHhcccC
Confidence 1234678999999999998888887776666554 23599999999998754 221111111 1211111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
...+++ .+||.++.|+++++..+.+.+....
T Consensus 355 ~~~~~~------~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 355 PWAPRV------NISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCEE------EEECCCCCCHHHHHHHHHHHHHHhc
Confidence 112333 3799999999999999998876533
No 38
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.82 E-value=5.3e-19 Score=152.03 Aligned_cols=154 Identities=23% Similarity=0.289 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCChHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
.++|+|+|.+|+|||||+|+|++......... +...|.........+. ++ ..++|||||||++... ....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 48999999999999999999999876543221 1234444444333331 34 3799999999998743 2333
Q ss_pred HHHHHHHHH----------------hc--cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 91 SKEIVKCIG----------------MA--KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 91 ~~~~~~~~~----------------~~--~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
++.+..++. .. ...+|+++|+++.+ ++++..+..+++.+.. ..|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 333332111 01 13589999999987 5788888887777764 14899999999998
Q ss_pred CCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 152 EDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
.. ..+..+... +.+.+...+.+++.|...
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence 65 455555554 778888888888887664
No 39
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.82 E-value=6.5e-19 Score=140.07 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|++|+|||||+|++++..... ...++.+.+.....+.+ ++ ..+.+|||||... +...+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN--QYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--cCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence 379999999999999999999987522 22344444444555555 44 3689999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+..+|++++|+|++++-+... ..++..+....+. ..|+++++||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL 135 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence 445778899999999985433222 3444444443332 35999999999985431111111 22333344
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. .|+.++.|+++++.+|.+.
T Consensus 136 ~~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 444444 6788889999999998753
No 40
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=3.3e-19 Score=142.74 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.|+++|.+|+|||||+|+|++... ......+.|.......+... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 3699999999999999999998764 22233455666655555552 267899999999643 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-Hhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (311)
...+..+|++++|+|+++.........+..+.. . ..|+++|+||+|+.......+...+.. +.... ...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 137 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-A----NVPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEW 137 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEEceecccccHHHHHHHHHH-----hhccccccc
Confidence 344677899999999986555555556655543 2 358999999999764421222222211 00000 011
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+ .+++. +|+.++.|+.+++++|.++.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 138 GGDVQIVP------TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cCcCcEEE------eecccCCCHHHHHHHHHHhh
Confidence 1 23333 68888899999999998764
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=4e-19 Score=163.42 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=121.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|+|++.... .....+++|.......+.+ .+..+.||||||+... .+.+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 4899999999999999999997742 2234567888888888888 8899999999998642 344556676767777
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
+..+|+++||+|+..+++..+..+...+++. .+|+++|+||+|.... ... ... +...+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~--~~~-----------~~~-~~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE--DAV-----------AAE-FYSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc--ccc-----------HHH-HHhcCCCC
Confidence 8889999999999878888888888888763 2599999999997754 211 011 112232 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++. +||.++.|+.++++.+...++.
T Consensus 137 ~~~------vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PIP------ISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eEE------EeCCcCCChHHHHHHHHHhcCc
Confidence 343 7888899999999999887643
No 42
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=4.7e-19 Score=141.06 Aligned_cols=155 Identities=17% Similarity=0.107 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++....+......+.+ ........ ++ ..+.+|||||... +...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKF-EGKTILVDFWDTAGQER-----------FQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEEE-CCEEEEEEEEeCCCchh-----------hhhhh
Confidence 479999999999999999998766422111111111 11222233 33 3688999999442 33444
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++.+..+ ..++..+.+... ..|+++|+||+|+... .... ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~~ 131 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPS----VTQK--------KFNFAEKH 131 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchh----HHHH--------HHHHHHHc
Confidence 556788999999999985544333 345566655432 3599999999997422 1111 12223333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.+++. +|+.++.|++++++.+.+.+.
T Consensus 132 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 132 NLPLYY------VSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 444444 688899999999999887653
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4.3e-19 Score=164.25 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=119.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++..... ....+++|.......+.+ .+..+.||||||+... ...+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~-v~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV-VEDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc-ccCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence 345799999999999999999999976422 234567888888888888 8889999999998631 22344556666
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..++..+|++|||+|++++.+..+..+...+.. ...|+++|+||+|+.... .... .... .
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~~~~-~~~~------------~~~~-~ 171 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDERGE-ADAA------------ALWS-L 171 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCccc-hhhH------------HHHh-c
Confidence 6667788999999999997777777777777764 235999999999975431 1111 1111 1
Q ss_pred CC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+. .++ .+||.++.|+.+|++.|...+++
T Consensus 172 g~~~~~------~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 GLGEPH------PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCeE------EEEcCCCCCcHHHHHHHHhhccc
Confidence 21 122 37899999999999999877644
No 44
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.82 E-value=8.6e-19 Score=144.07 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.|+++|.+|+|||||++++..... .. ...+..+.......+.+ ++ ..+.||||||.. .+...+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f-~~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe-----------~~~~l~ 66 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF-CE-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQE-----------RFNSIT 66 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCch-----------hhHHHH
Confidence 3689999999999999999987654 22 11222333443444555 44 478999999943 355556
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.... ...+....
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~--~~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~ 135 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETD--REISRQQ-------GEKFAQQI 135 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc--cccCHHH-------HHHHHHhc
Confidence 667889999999999985544433 3455556554433 2589999999997643 2221111 12233332
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++. +||.++.|+.+++.++...+..
T Consensus 136 ~~~~~~e------tSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 136 TGMRFCE------ASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 333443 7899999999999998876543
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.82 E-value=9.4e-19 Score=139.88 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++..... ...+..+.......+.. ++ ..+.+|||||... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 689999999999999999999876421 11122222222223333 33 4789999999432 33344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE--RVVSS-------ERGRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHHHc
Confidence 556889999999999984432222 3444455443322 3589999999998654 21110 0123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|+.++.|+.++++.+...+
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 137 GFEFFE------ASAKENINVKQVFERLVDII 162 (165)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 444544 68888999999999988765
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=9.1e-19 Score=140.24 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|++|+|||||+|++++...... ..+..+.......+.+ .+ ..+.+|||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHH
Confidence 48999999999999999999998764221 1222222333334444 44 3789999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+-.. ..++..+..... ...|+++|.||+|+.+......+ ....+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKE---------EGEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 4455788999999999985433322 344444544332 23599999999998754111111 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+.++.|+.+++..+.+.+
T Consensus 138 ~~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 138 YGIKFLE------TSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4555554 78888899999999988765
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.82 E-value=9.4e-19 Score=140.32 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++........ +..+.......+.. .+ ..+.||||||.. .+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITI-DGKQIKLQIWDTAGQE-----------SFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHH
Confidence 3799999999999999999999876422222 22222222233333 33 378999999932 23333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+-.+ ..++..++.... ...|+++|.||+|+......... ....+...
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 138 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYE---------EGEAFAKE 138 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 4455778999999999984333222 334444444332 23589999999998743111111 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+..+.|+.+++..+.+.+
T Consensus 139 ~~~~~~e------~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 139 HGLIFME------TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4555544 78888899999998887665
No 48
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=3.6e-19 Score=145.22 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=105.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~ 87 (311)
+|+|+|.+|+|||||+|+|++......... ..+.|.......+.+ .+..+.+|||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence 589999999999999999998764322110 123444544555555 677899999999754
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP 167 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~ 167 (311)
+...+..++..+|++++|+|++++........+..+.. ...|+++|+||+|.... ..+......
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 22223334567899999999987666666666655554 23599999999998864 333322222
Q ss_pred chHHHHHHhcCCc--------EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNR--------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 168 ~~~~~~~~~~~~~--------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+...+...+.. .....+....|+..+.|+.+++.++...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 23333322210 000111233788889999999999987653
No 49
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.82 E-value=1e-18 Score=139.75 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++.+.... . ..++..........+.. ++ ..+.||||||.. .+....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-A-DCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQE-----------RFRAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-C-CCCcccceeEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHHHH
Confidence 78999999999999999999987642 1 11111112222223333 33 368999999942 244444
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++|+|+|++++-+-.. ..++..+.....+ ..|+++|.||+|+... ..+.. .....+....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 137 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQ--RDVTY-------EEAKQFADEN 137 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCcCH-------HHHHHHHHHc
Confidence 556788999999999985433322 3444444443322 3589999999998654 22110 0123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|+.+++..+...+
T Consensus 138 ~~~~~e------~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 138 GLLFLE------CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 555554 78889999999998877544
No 50
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.82 E-value=1.8e-18 Score=138.08 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ....+..+.......+.. ++ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~-----------~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN--LDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQE-----------RYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHHH
Confidence 379999999999999999999987742 222233333344444444 44 368899999943 23333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++.++++|+|+|++++.+..+ ..++..+...... ..|+++|.||+|+........++ ...+...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTEE---------AKAFAEK 137 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 4455778999999999984443333 3445555554322 25999999999976431111111 2233333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +|+.++.|+.++++.+...+
T Consensus 138 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 138 NGLSFIE------TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred cCCEEEE------EECCCCCCHHHHHHHHHHHh
Confidence 3444554 78888999999999987643
No 51
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=1.7e-19 Score=147.33 Aligned_cols=161 Identities=21% Similarity=0.320 Sum_probs=114.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEE--eeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTM--LKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~--~~~~~~l~liDTPG~ 80 (311)
+.++|+++|+.++|||||+++|++....... ....+.|.......+. . .+..++++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 4589999999999999999999865421110 0113566777777776 6 8899999999996
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+ +..........+|++|+|+|+..++.......+..+.... .|+++++||+|.. . ..+.+
T Consensus 81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~-~--~~~~~ 141 (188)
T PF00009_consen 81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLI-E--KELEE 141 (188)
T ss_dssp HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSS-H--HHHHH
T ss_pred cc-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccch-h--hhHHH
Confidence 43 3333444467889999999998888888888888776532 4899999999988 2 44444
Q ss_pred HhhhcCCchHH-HHHHhcCC------cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLK-EILQLCDN------RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~-~~~~~~~~------~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+ +. .++...+. ++++ .|+.++.|+..|++.|.+.+|
T Consensus 142 ~~~~-----~~~~l~~~~~~~~~~~~~vi~------~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 142 IIEE-----IKEKLLKEYGENGEEIVPVIP------ISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHH-----HHHHHHHHTTSTTTSTEEEEE------EBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHH-----HHHHhccccccCccccceEEE------EecCCCCCHHHHHHHHHHhCc
Confidence 4443 33 34333321 3444 788899999999999988764
No 52
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.82 E-value=2.2e-18 Score=140.28 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|..|+|||||++++.+... .... .+..+.......+.. ++ ..+.||||||... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 348999999999999999999987543 2111 122333333334444 44 4788999999432 444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++.++|++|+|+|++++.+-.. ..++..+..... ..|++||.||.|+... ..+.. .....+..
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~~~--~~v~~-------~~~~~~a~ 138 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLAFK--RQVAT-------EQAQAYAE 138 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccchhc--cCCCH-------HHHHHHHH
Confidence 45556789999999999985554444 456666665442 3599999999997643 11111 11344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
..+..++. +||.++.|++++++.+.+.+....+
T Consensus 139 ~~~~~~~e------~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 139 RNGMTFFE------VSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred HcCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 55655555 7999999999999999976654443
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.82 E-value=1.5e-18 Score=138.73 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++..... ...++.+.......+.. .+ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE--SYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 799999999999999999999876422 22233333344444444 44 3689999999432 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++.+|++|+|+|++++-+-.. ..++..+...... ..|+++|.||+|+... ..+.. .....+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~--~~~~~-------~~~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK--RVVDY-------SEAQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc--cCCCH-------HHHHHHHHHc
Confidence 445778999999999984332222 3344445444322 3589999999997644 22110 0123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +|+.++.|+.+++..|.+.+
T Consensus 138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFLE------TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEEE------EECCCCcCHHHHHHHHHHHH
Confidence 555555 78888899999999987755
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=6.7e-19 Score=140.71 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++...... ..+.............. ....+.+|||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 6899999999999999999998764221 11111111111112212 2347889999997642 122233
Q ss_pred ccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++..+|++|+|+|++++-+... ..++..+.+..+.. ...|+++|.||+|+... ..+.... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence 4667899999999985544333 44556666655432 34599999999998653 2221110 122223334
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..++. +||.++.|+++++++|.++
T Consensus 140 ~~~~e------~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFME------TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEE------eecCCCCCHHHHHHHHHhc
Confidence 44444 7889999999999998764
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.81 E-value=1.9e-18 Score=137.65 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++++++... .....+..+.......+.+ .+ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHHH
Confidence 4899999999999999999998765 2222233333333444444 44 378899999943 233334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+...... ..|+++|.||+|.........+ . ...+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQRQVSRE-E--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccccCCCHH-H--------HHHHHHHc
Confidence 445778999999999985433333 2344444443322 3599999999997653101111 1 23334445
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. .|+.++.|++++++.|.+.+.
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 555555 677788999999999987653
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.7e-18 Score=138.41 Aligned_cols=157 Identities=14% Similarity=0.137 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++.+...... ..+..+.......+.+ ++ ..+.||||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHHH
Confidence 48999999999999999999987654211 1122223334444555 44 378999999932 23334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..+|++++|+|++++-+... ..++..+..... ...|+++|.||+|+......... ....+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFE---------EACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 4455778999999999985433222 355555554332 23589999999998654111111 12333343
Q ss_pred cCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+. .++. +|+.++.|+.+++..+.+
T Consensus 138 ~~~~~~~e------~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAVLE------TSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEEEE------EECCCCCCHHHHHHHHHH
Confidence 333 2333 788889999999998865
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=1e-18 Score=145.73 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++... .....+..+.......+.+.+ ...+.||||||.. .....+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence 4799999999999999999998764 212222222333333444422 2478999999942 233344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..++..+|++|+|+|++++-+-.. ..++..+.+.... ....|+++|.||+|+... ..+... ....+...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~-------~~~~~~~~ 138 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD-------KHARFAQA 138 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH-------HHHHHHHH
Confidence 455788999999999985433332 3456666665533 223479999999998643 211110 12334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++.|...+..
T Consensus 139 ~~~~~~~------iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCL------VSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 4544444 6889999999999999877643
No 58
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=3.9e-18 Score=156.33 Aligned_cols=158 Identities=22% Similarity=0.294 Sum_probs=109.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.||+|||||+|+|++...... ...+++|.......+.+ ++..+.+|||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 448999999999999999999999764222 23467777777777777 88899999999987532 11111111112
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++++|+|++++.+..+..++.. . ...|+++|+||+|+... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234677899999999986666555443332 1 23599999999998654 1111 1112
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +|+.++.|+++|+++|.+.+..
T Consensus 345 ~~~i~------iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIR------ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEE------EEeeCCCCHHHHHHHHHHHHhh
Confidence 33443 6888899999999999988754
No 59
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=9.3e-19 Score=153.86 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|.||||||||+|+|++... .....+.+|.......+.+.++..+.||||||+.........+...+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr---- 231 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK---- 231 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH----
Confidence 5789999999999999999998764 3334456677777777777333899999999987532221222333322
Q ss_pred ccCCccEEEEEEECCCC---CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 101 AKDGIHAVLLVFSIRNR---FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
.+..++++|||+|+++. -...+ ..+.+.+..+...-..+|+++|+||+|+... ....+.. ..+...
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~--------~~l~~~ 301 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELL--------KELKKA 301 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHH--------HHHHHH
Confidence 24567999999999832 11122 2334444443221134699999999998755 3333222 222233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..+++ +||.++.++++++++|.+.+
T Consensus 302 ~~~~vi~------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFP------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence 3444554 78889999999999998764
No 60
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.81 E-value=4.1e-19 Score=152.44 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCChHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
.++|+|+|.+|+|||||||+|++......... ....+..+......+. ++ .+++|||||||+|.. .....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 48999999999999999999999876544210 1123334444444442 22 289999999999863 33333
Q ss_pred HHHHHHHHHh-----------------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 91 SKEIVKCIGM-----------------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 91 ~~~~~~~~~~-----------------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+..+..++.. ....+|++||+++.+ +++++.|...|+.|.+.+ |+|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccC
Confidence 3334333321 114589999999986 789999999888887653 8999999999998
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
. ..+..+... +...+...+.+++.|...
T Consensus 157 ~--~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 157 P--EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 7 788877776 788888888888776654
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=1.3e-18 Score=138.54 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|++|+|||||+|++++...........+. ......+.+. .+..+.||||||.. .+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~v~~~~~~~~~~i~D~~G~~-----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGA--AFLTQTVNLDDTTVKFEIWDTAGQE-----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--eEEEEEEEECCEEEEEEEEeCCchH-----------HHHHHHH
Confidence 78999999999999999999988753211111221 1222233331 23478899999932 2333344
Q ss_pred hccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++.++|++++|+|+++.-+-. ...++..+..... ...|++++.||+|..........+ ...+....+
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEE---------AQEYADENG 137 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHH---------HHHHHHHcC
Confidence 4577899999999997332222 2455555655443 235899999999976431112211 233444445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++. .|+.++.|+.++++.+.+.+
T Consensus 138 ~~~~~------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFFE------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHh
Confidence 44444 78888899999999987654
No 62
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=2.6e-18 Score=140.70 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... .....+..+.......+.+ ++ ..+.||||||.. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 47999999999999999999887642 1111122222222222333 33 378899999932 233334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++|+|+|++++-+... ..++..+.+.... ..|+++|+||+|+......... ....+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKRE---------DGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHH---------HHHHHHHHc
Confidence 445778999999999985433322 4455566655432 3599999999998643101111 123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+.+++. +|+.++.|+.+++..|.+.+...
T Consensus 137 ~~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFME------TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 555554 78889999999999999877653
No 63
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=143.63 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=101.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|+|+|... .. ...+++|.... .+.+ . .+.+|||||+++.........+.+...
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~-~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RV-GKRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-cc-CCCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 3458999999999999999999998763 22 22345555433 2333 2 689999999876544333333334433
Q ss_pred H----HhccCCccEEEEEEECCCCC-----------ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 98 I----GMAKDGIHAVLLVFSIRNRF-----------SKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 98 ~----~~~~~~~d~il~v~d~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+ ......++++++|+|.+... ...+..++..+.. ...|+++|+||+|+... . .+..
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~--~--~~~~ 150 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKN--R--DEVL 150 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCc--H--HHHH
Confidence 2 22345678999999986211 1122333444432 13599999999997654 2 1111
Q ss_pred hhcCCchHHHHHHhcCC--cEEEe-cCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDN--RCVLF-DNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~--~~~~f-~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+. .+..+ .....+||.++ |+++++++|.+.+.+
T Consensus 151 --------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 --------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred --------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 111122221 10000 01123799999 999999999887644
No 64
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=7.1e-19 Score=139.29 Aligned_cols=156 Identities=20% Similarity=0.260 Sum_probs=102.5
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDG 104 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (311)
|+|.+|+|||||+|++++.... ....+++|.......+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK--VGNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc--ccCCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5899999999999999998642 223456777777777777 678999999999876543221 11222222111 68
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|++++|+|+++ .. ....++..+.. ...|+++|+||+|+... ..+... ...+....+.+++.
T Consensus 75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~~- 136 (158)
T cd01879 75 PDLIVNVVDATN-LE-RNLYLTLQLLE-----LGLPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVVP- 136 (158)
T ss_pred CcEEEEEeeCCc-ch-hHHHHHHHHHH-----cCCCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeEE-
Confidence 999999999984 22 22233333333 13599999999998755 222211 22233333555555
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+|+.++.|+.++++.+..+.
T Consensus 137 -----iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 -----TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -----EEccCCCCHHHHHHHHHHHh
Confidence 78888899999999987753
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=1.3e-18 Score=138.35 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|++|+|||||+++|++...... ..+..+.......+.. ++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQER-----------FRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEECcchHH-----------HHHhH
Confidence 4899999999999999999998764221 2222233333333333 33 3788999999532 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++.+|++++|+|++++.+... ..++..+.....+ ..|+++++||+|.... ..+. ......+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~--~~~~-------~~~~~~~~~~~ 135 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP--NIVVILVGNKSDLADQ--REVT-------FLEASRFAQEN 135 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcchh--ccCC-------HHHHHHHHHHc
Confidence 445678999999999985443333 3444545444433 3599999999997643 1111 01123344444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. +|+.++.|+.++++.+.+
T Consensus 136 ~~~~~~------~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLE------TSALTGENVEEAFLKCAR 159 (161)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHH
Confidence 545544 688888999999998864
No 66
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=1.4e-18 Score=157.54 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=110.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.||||||||+|+|++...+ ....+++|.+.....+.+.+...+.||||||+... ....+.+.+...+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl 271 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL 271 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH
Confidence 3478999999999999999999998764 23445677777777777734448999999998542 1233344454443
Q ss_pred HhccCCccEEEEEEECCCCCChhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+..+|++|+|+|++++....... +...+..+.. ...|+++|+||+|+... ... ... . ...
T Consensus 272 -~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~--~~~--~~~--------~--~~~ 334 (426)
T PRK11058 272 -QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDD--FEP--RID--------R--DEE 334 (426)
T ss_pred -HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCc--hhH--HHH--------H--Hhc
Confidence 3467899999999998665444432 3344444322 23599999999998643 110 001 0 011
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.+++ ..+||.++.|+++|+++|.+.+..
T Consensus 335 ~~~~~-----v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 335 NKPIR-----VWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCce-----EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 22211 226889999999999999987743
No 67
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=2.7e-18 Score=154.74 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=110.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
.|+|+|.||||||||||+|++... .....+.+|.......+.+.++..++|+||||+.........+...+. ..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fL----rh 233 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFL----RH 233 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHH----HH
Confidence 899999999999999999998774 334456778888777777733789999999999752211122222222 22
Q ss_pred cCCccEEEEEEECCCC---CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 102 KDGIHAVLLVFSIRNR---FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+..++++|+|+|+++. -...+ ..+...|..+...-..+|+++|+||+|+... ... +..+....
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~------------l~~l~~~l 300 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EEN------------LEEFKEKL 300 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHH------------HHHHHHHh
Confidence 4567999999999732 11122 3445555554322235799999999996322 111 12222333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+..+++ +||.++.|+++|+++|.+.+...
T Consensus 301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 GPKVFP------ISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 334444 68888999999999999888653
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=4.4e-18 Score=139.81 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+|+|.+|+|||||++++++... +.. ..+..+..+....+.+ ++ ..+.||||||..+..... ..+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~-~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEE-YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTA---GQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-Ccc-cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccc---hhHHHHHH
Confidence 4799999999999999999998764 221 2222222222233444 55 367899999986532211 11122223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH-
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ- 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (311)
..++..+|++|+|+|++++-+-.. ..+...+..... .....|+++|.||+|+... ...... .+..+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 344678999999999985433332 334444444331 1233599999999998643 211110 1222222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
..+..++. +||.++.|++++++.+...+-.++
T Consensus 146 ~~~~~~~e------~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 146 SWKCGYLE------CSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred hcCCcEEE------ecCCCCCCHHHHHHHHHHHhhccC
Confidence 22444554 789999999999999887664433
No 69
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.2e-18 Score=160.48 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ .+..+.||||||+.+.. ..+...+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5899999999999999999999874222 33567888888888888 88999999999998622 2244555555566
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|||+|++++++..+..+..++++. ..|+++|+||+|..... ....+ . ...+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~~-~~~~~------------~-~~lg~~ 137 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDEE-ADAYE------------F-YSLGLG 137 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccch-hhHHH------------H-HhcCCC
Confidence 67889999999999878888887777777763 35999999999964320 11111 1 11222
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++ .+|+.++.|+.++++.|..
T Consensus 138 ~~~------~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPY------PISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCE------EEEeeCCCCHHHHHHHHHh
Confidence 123 3678888999999988876
No 70
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=8.2e-19 Score=141.35 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+++|++|+|||||+|++++... .. ...|.......+.+ ++..+.+|||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDI--DT---ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCC--CC---cCCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence 3445668999999999999999999998743 11 12233333444555 677899999999542 3
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++.++|+++||+|++++-+... ...+..+.... .....|+++|+||+|+... ...++ +...
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~ 139 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGA--LSEEE---------IREA 139 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccC--CCHHH---------HHHH
Confidence 3344556788999999999984422222 12222221110 1123599999999998654 22221 1222
Q ss_pred HHh-----cCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 174 LQL-----CDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 174 ~~~-----~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+.. .+.+++ .+||.++.|++++++++.
T Consensus 140 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 140 LELDKISSHHWRIQ------PCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred hCccccCCCceEEE------eccCCCCcCHHHHHHHHh
Confidence 211 112233 378899999999999874
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.80 E-value=7e-19 Score=144.18 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc---cc--ccCCCCCcceeEEEEEEEee-------------CCceEEEEeCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA---FM--SKAGSSGVTKTCEMQRTMLK-------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~---~~--~~~~~~~~T~~~~~~~~~~~-------------~~~~l~liDTPG~~~ 82 (311)
++|+++|++|+|||||+++|++... +. ......+.|.......+.+. .+..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 4799999999999999999997311 10 01112355666665555551 166899999999632
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+..........+|++++|+|+++..+..+...+... ...+ .|+++++||+|.... .......
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 222223335567999999999866655554444433 2233 489999999998754 3222222
Q ss_pred hhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 163 ~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ....+...+.. .+.++++ +|+.++.|+.+|++.+...++
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi~------iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPIIP------VSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEEE------EeccCCCCHHHHHHHHHhccc
Confidence 22 00112222221 1234444 788999999999999987654
No 72
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=2.5e-18 Score=141.90 Aligned_cols=163 Identities=10% Similarity=0.036 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... . ...+..........+.+. ....+.||||||... +...+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-Q-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhhH
Confidence 48999999999999999999987542 1 111222222323334441 133789999999532 33344
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC--CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|+|+|++++.+-.. ..++..+..... .....|+++|+||+|+........+ .+..+..
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~---------~~~~~~~ 138 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE---------QMDQFCK 138 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH---------HHHHHHH
Confidence 556789999999999985433332 234444443321 1234599999999998632101111 1344445
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..++. +|+.++.|+.+++++|.+.+..
T Consensus 139 ~~~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 139 ENGFIGWFE------TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444 34444 7888899999999999877643
No 73
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.80 E-value=5.8e-18 Score=137.23 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=102.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------CCceEEEEeCCCCCCCCCCh
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------AGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------~~~~l~liDTPG~~~~~~~~ 87 (311)
..++|+++|.+|+|||||++++.+.... ....+..+.......+.+. ....+.||||||.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------- 73 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ------- 73 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh-------
Confidence 3489999999999999999999987642 1111222222222223221 1247889999992
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
+.+......++.++|++++|+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ..+..
T Consensus 74 ----~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~v~~------ 140 (180)
T cd04127 74 ----ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ--RQVSE------ 140 (180)
T ss_pred ----HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc--CccCH------
Confidence 3344555566889999999999984433333 334444444321 123589999999998653 11110
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....+....+.+++. +|+.++.|++++++.+.+.+
T Consensus 141 -~~~~~~~~~~~~~~~e------~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 141 -EQAKALADKYGIPYFE------TSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHHHcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 1133444444555554 78889999999999998755
No 74
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.80 E-value=2.9e-18 Score=141.30 Aligned_cols=161 Identities=15% Similarity=0.166 Sum_probs=102.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||++++++.... ....+..+.......+.+ .+ ..+.||||||... +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHH
Confidence 3589999999999999999999987641 111122222233333444 33 3688999999432 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++-+-.. ..++..+....+ ..|+++|+||+|+... ..+... ....+..
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~ 138 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVETE-------DAYKFAG 138 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCHH-------HHHHHHH
Confidence 34555788999999999985433222 344555554332 3589999999998654 222111 1233334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+.+++++|...+..
T Consensus 139 ~~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 139 QMGISLFE------TSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred HcCCEEEE------EECCCCcCHHHHHHHHHHHHHH
Confidence 44545554 7888899999999999876543
No 75
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=2.3e-18 Score=157.02 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+|+|.||||||||||+|++... .....+++|.......+.+ .+..++|+||||+.........+...+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fL---- 231 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFL---- 231 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHH----
Confidence 35799999999999999999999764 3344567788887777777 7789999999998753222222222222
Q ss_pred hccCCccEEEEEEECCCC----CChhHH-HHHHHHHHHhC---------CCccCeEEEEEeccCCCCCChhcHHHHhhhc
Q 021534 100 MAKDGIHAVLLVFSIRNR----FSKEEG-AAIHILESLFG---------KKISDYMIVVFTGGDELEDNDETLEDYLGRE 165 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~----~~~~~~-~~l~~l~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 165 (311)
..+..+|++|+|+|+++. -...+. .+...|..+.. .-..+|+++|+||+|+... ..+.+.+
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l--- 306 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV--- 306 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH---
Confidence 234667999999999721 111122 22233443321 1124699999999997644 3332222
Q ss_pred CCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 166 CPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+...+.++++ +|+.++.|+++|+.+|.+++...
T Consensus 307 -----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 307 -----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred -----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhh
Confidence 2223333555555 78888899999999999888653
No 76
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.80 E-value=3.7e-18 Score=135.85 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+|++++..... ...++.+.......+.+. ....+.||||||.. .+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAI 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHh
Confidence 479999999999999999999876421 112222222222333331 23478999999932 23444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++|++++|+|++++-+... ..++..+..... ..|+++|+||+|+... ..+.. .....+...
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~--~~v~~-------~~~~~~~~~ 135 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQ--AVITN-------EEAEALAKR 135 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccc--cCCCH-------HHHHHHHHH
Confidence 4556788999999999984433222 334444444332 3599999999998654 22111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+.+++. +|+.++.|+++++++|..
T Consensus 136 ~~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 136 LQLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHH
Confidence 5555554 677888999999988864
No 77
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=1.3e-18 Score=143.64 Aligned_cols=163 Identities=16% Similarity=0.203 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEee--------------------------CC----
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLK--------------------------AG---- 69 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~--------------------------~~---- 69 (311)
.+|+++|++|+|||||+.+|++... ........+.|..+.+..+.|. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999987631 1112222344444444444331 02
Q ss_pred --ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 --QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 --~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.||||||.. .+...+......+|++++|+|++++ ........+..+.. .+. .|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 689999999943 2444445556778999999999853 33444455554433 221 47999999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
|+|+... ......+.. +...+... +..+++ +|+.++.|+++|++.|.+.+++
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~~~~i~~------vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAENAPIIP------ISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccCCCcEEE------EeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 333332222 33333321 223444 7888999999999999876643
No 78
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.8e-17 Score=136.20 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCChH-------H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA---GQVVNVIDTPGLFDSSADPE-------F 89 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~---~~~l~liDTPG~~~~~~~~~-------~ 89 (311)
.++|+.+|.+|.|||||+++|++.+.-....+..-.++..+...+.+.. ...++|+||.||+|.-..++ .
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 4899999999999999999999876422222222233333333333311 12789999999998643322 1
Q ss_pred HHHHHHHHH----------H-hccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc
Q 021534 90 VSKEIVKCI----------G-MAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET 157 (311)
Q Consensus 90 ~~~~~~~~~----------~-~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~ 157 (311)
+...+..++ . .-...+|+++|++..+ |++...|.-+++.|... .++|.|+.|.|.+.. ..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK--~e 193 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK--EE 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH--HH
Confidence 222222211 1 1125689999999776 88888888888777653 389999999998877 66
Q ss_pred HHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhH
Q 021534 158 LEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRT 195 (311)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~ 195 (311)
+..+... +..-+...|..++-|.....+.+..+
T Consensus 194 L~~FK~k-----imsEL~sngv~IYqfPtDdetva~~N 226 (406)
T KOG3859|consen 194 LKRFKIK-----IMSELVSNGVQIYQFPTDDETVAKAN 226 (406)
T ss_pred HHHHHHH-----HHHHHHhcCceeeeccchHHHHHHHH
Confidence 7666554 44444445777777766544444333
No 79
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.80 E-value=7e-19 Score=140.79 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc--CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK--AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~--~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+|+|++|+|||||+|+|++......+ ......|.......+.+ ++..+.+|||||..+ +...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 5899999999999999999875321001 11223455555556666 788999999999653 333344
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+.++|+++||+|+++.-+.. .....+...... ....|+++++||+|+... ....+.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFE--ESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHH--HHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 4578899999999987332111 122222222221 123599999999997654 222221110 11111111
Q ss_pred ---CCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 178 ---DNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 178 ---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+..++. +||.++.|+++++++|.
T Consensus 140 ~~~~~~~~~------~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDCLVLP------VSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCceEEEE------eeCCCCcCHHHHHHHHh
Confidence 123333 78899999999999885
No 80
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.80 E-value=2.5e-18 Score=138.11 Aligned_cols=162 Identities=16% Similarity=0.102 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++... .... .+..........+.. .+ ..+.||||||.. .+.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~-----------~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNY-KATIGVDFEMERFEI-LGVPFSLQLWDTAGQE-----------RFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCC-CCceeeEEEEEEEEE-CCEEEEEEEEeCCChH-----------HHHhhHH
Confidence 689999999999999999998764 2211 122222222233333 33 478999999943 2444445
Q ss_pred hccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++.++|++++|+|++++-+.. ...++..+.+...+ ...|+++|.||+|+... ....... .....+....+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~--~~~~~~~-----~~~~~~~~~~~ 139 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP--AQYALME-----QDAIKLAAEMQ 139 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc--ccccccH-----HHHHHHHHHcC
Confidence 5688999999999997432222 23444444333222 12479999999997544 1111000 01223334344
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +||.++.|+.+++..+.+++.+
T Consensus 140 ~~~~e------~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 140 AEYWS------VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 45444 6888999999999999887754
No 81
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.80 E-value=1.2e-18 Score=140.56 Aligned_cols=162 Identities=21% Similarity=0.185 Sum_probs=99.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKD 103 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (311)
++|++|+|||||+|+|++... .....+++|.......+.+ . +..+.+|||||+.+.....+.+...+ ...+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~----~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQF----LAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHH----HHHHh
Confidence 589999999999999999864 2223345666666666666 6 88999999999864321112122222 22355
Q ss_pred CccEEEEEEECCCCC------ChhH-HHHHHHHHHHhCC-----CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 104 GIHAVLLVFSIRNRF------SKEE-GAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 104 ~~d~il~v~d~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
++|++++|+|+++.. ...+ ..+...+...... -...|+++|+||+|.... ....... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence 689999999998442 2222 2222333322110 023699999999998755 3333221 01
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
......+..++. +|+.++.|+.++++.+..+
T Consensus 145 ~~~~~~~~~~~~------~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVVP------ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEEE------EehhhhcCHHHHHHHHHhh
Confidence 112222344454 7888999999999988653
No 82
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.3e-18 Score=133.83 Aligned_cols=163 Identities=16% Similarity=0.169 Sum_probs=117.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||.|+-++.+.....+.. ....+++....+.+ ++. .+.||||.| +++++..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~--sTIGVDf~~rt~e~-~gk~iKlQIWDTAG-----------QERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYI--STIGVDFKIRTVEL-DGKTIKLQIWDTAG-----------QERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhc--ceeeeEEEEEEeee-cceEEEEEeeeccc-----------cHHHhhh
Confidence 4899999999999999999998877522222 23445555666666 554 799999999 4678888
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+|+++|+||+|+|++..-+-+. ..|+..+.+..... .|.++|.||+|+.+. ..+... ........
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~--~~v~~~-------~a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEK--RVVSTE-------EAQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhh--eecCHH-------HHHHHHHh
Confidence 8899999999999999995433333 56777777776653 389999999998765 222211 12344455
Q ss_pred cCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 177 CDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 177 ~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.+.+ ++. +||+...++++.+..+...+....
T Consensus 144 ~~~~~f~E------TSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 144 LGIPIFLE------TSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCcceee------cccCCccCHHHHHHHHHHHHHHhc
Confidence 5555 443 788888899999988887665433
No 83
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=1.8e-18 Score=141.56 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||+|++++... .... .+..+ ......+.+ ++. .+.||||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~-~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETY-DPTIE-DSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccC-CCchH-hhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 589999999999999999987653 2211 11111 111122333 444 588999999543 223334
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.+++++|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ..+... ....+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTE-------EGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHH-------HHHHHHHHh
Confidence 45778899999999985443333 3455556554332 234599999999998643 221111 012333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++. +||.++.|+.+++.++.+.+..
T Consensus 137 ~~~~~e------~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFIE------ASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 555554 7888999999999999876654
No 84
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.80 E-value=1.8e-18 Score=137.79 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++.+.... ... .+++.......+.. ++ ..+.||||||... +....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKY--DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQ-----------FTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-ccc--CCchhhhEEEEEEE-CCEEEEEEEEECCCccc-----------cchHH
Confidence 78999999999999999999976532 211 11111222223333 44 3677899999654 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSRE-------EGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHH-------HHHHHHHHc
Confidence 445778999999999984433332 3444455543322 24599999999997643 222110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.+++. +||.++.|+.+++.++.+.
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFYE------TSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHh
Confidence 545554 7888999999999998754
No 85
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=3.3e-18 Score=136.58 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=99.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
|+++|.+|+|||||++++.+.... ... .+|.......+.. .+..+.+|||||... +...+..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-~~~---~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~-----------~~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-ESV---VPTTGFNSVAIPT-QDAIMELLEIGGSQN-----------LRKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-ccc---cccCCcceEEEee-CCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence 789999999999999999987532 211 1222222334444 677899999999543 333344557
Q ss_pred CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEE
Q 021534 103 DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 182 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (311)
+++|++|||+|++++.+-.. ...++.+........|+++|.||+|+... ....+.... . .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence 88999999999985432222 11223333222234699999999997654 333322111 0 02333333333444
Q ss_pred EecCCchhhhhhHHHHHHHHHHHH
Q 021534 183 LFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 183 ~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.-.....+|+.++.|+.++++.+.
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHh
Confidence 334455678889999999998764
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=2.4e-18 Score=166.40 Aligned_cols=166 Identities=19% Similarity=0.207 Sum_probs=121.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.....++|+++|.+|+|||||+|+|+|..... ....+|+|.........+ .+..+.+|||||+... .+.+...+.
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~ 345 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEAD---VEGIDSAIA 345 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCC---CccHHHHHH
Confidence 34456889999999999999999999876422 234578888888877788 8889999999998742 123455566
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.....++..+|++|||+|++++++..+..+...++. ...|+++|+||+|..... ....+ +. .
T Consensus 346 ~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~-~~~~~---------~~---~ 407 (712)
T PRK09518 346 SQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQASE-YDAAE---------FW---K 407 (712)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECcccccch-hhHHH---------HH---H
Confidence 666667788999999999987788888777777764 236999999999975431 11111 11 1
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+ ...+ .+||.++.|+.+|++.|.+.++.
T Consensus 408 -lg~~~~~------~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 408 -LGLGEPY------PISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred -cCCCCeE------EEECCCCCCchHHHHHHHHhccc
Confidence 12 1222 37899999999999999887643
No 87
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.79 E-value=3.5e-18 Score=136.19 Aligned_cols=159 Identities=21% Similarity=0.159 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ... .+++.......+.+ ++ ..+.+|||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV-TDY--DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-ccc--CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 479999999999999999999987542 111 12222222223334 44 36889999996542 223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++.+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+... ..+... ....+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~--~~~~~~-------~~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ--RKVSRE-------EGQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc--ceecHH-------HHHHHHHH
Confidence 3344677899999999984433222 2333444443221 23599999999997654 221110 12333343
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|++++++.|...+
T Consensus 137 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYIE------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEEE------eeCCCCCCHHHHHHHHHHhh
Confidence 3444544 78888999999999987643
No 88
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.79 E-value=2.3e-18 Score=139.01 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|.+|+|||||++++..... .. . .+|.......+.. .+..+.+|||||... +...
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~---~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 73 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES-VT-T---IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPL 73 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCC-CC-c---CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHH
Confidence 3458999999999999999999964432 11 1 1233333344455 677899999999543 4444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHH-HHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHIL-ESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ...+..+ ..... ...|+++|+||+|+... ....+.... +. + .
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~ 142 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDEL--RDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-H 142 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhh--cCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-c
Confidence 5556889999999999984432222 2222222 21111 12589999999997643 222211111 00 0 0
Q ss_pred hc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.. ...+++ ..+||.++.|+.+++++|.+.+
T Consensus 143 ~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 143 SIRDRNWYI----QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ccCCCcEEE----EEeeCCCCCCHHHHHHHHHHHh
Confidence 01 111212 2378889999999999997654
No 89
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=3.7e-18 Score=139.47 Aligned_cols=137 Identities=19% Similarity=0.269 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------c-------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------S-------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~-------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
.++|+++|++++|||||+++|++..... . .....+.|.......+.+ ++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 4899999999999999999998641100 0 001246777776666666 788999999999643
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE 165 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 165 (311)
+.......+..+|++++|+|+..+....+...+..+... +. .++|+++||+|.... ....+.+..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~--~~~~~~~~~- 142 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD--EELLELVEM- 142 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc--HHHHHHHHH-
Confidence 333334456678999999999877888887877777653 22 248899999998744 333332221
Q ss_pred CCchHHHHHHhcC
Q 021534 166 CPKPLKEILQLCD 178 (311)
Q Consensus 166 ~~~~~~~~~~~~~ 178 (311)
.+..++...+
T Consensus 143 ---~i~~~l~~~g 152 (195)
T cd01884 143 ---EVRELLSKYG 152 (195)
T ss_pred ---HHHHHHHHhc
Confidence 2566666544
No 90
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=3.8e-18 Score=142.49 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=102.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
....++|+++|.+|+|||||+++++............+.+ .....+... ....+.||||||... +.
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~--~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 76 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEK-----------FG 76 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee--EEEEEEEECCeEEEEEEEECCCchh-----------hh
Confidence 3567999999999999999999987655311111111222 222222221 234889999999544 23
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++.++|++|+|+|++++.+-.. ..++..+.+.+. ..|+++|.||+|+... ....+. + .+.
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~--~v~~~~--------~-~~~ 142 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNR--QVKAKQ--------V-TFH 142 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhhhc--cCCHHH--------H-HHH
Confidence 333445788999999999985544333 345555555432 3599999999997533 111111 1 222
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+.+++.+|...+.+
T Consensus 143 ~~~~~~~~e------~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 143 RKKNLQYYE------ISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HhcCCEEEE------cCCCCCCCHHHHHHHHHHHHHc
Confidence 333445544 7889999999999999876643
No 91
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=1.4e-18 Score=139.29 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.++|+++|.+|+|||||++++...... . . . +|.......+.. .+..+.+|||||... +...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~-~-~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-T-T-I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-c-c-c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 3589999999999999999999865431 1 1 1 122222333444 667899999999542 33444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|||+|++++.+-.+ ....+.+..... ...|+++|+||+|+... ....+.+++.. . .
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~------~---~ 139 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL------T---R 139 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC------C---c
Confidence 556788999999999985422221 122232222211 12599999999997643 00112211110 0 0
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.....+.. .++||.++.|+.+++++|.
T Consensus 140 ~~~~~~~~----~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 140 IRDRNWYV----QPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred cCCCcEEE----EEeeCCCCCChHHHHHHHh
Confidence 00111222 2378999999999999885
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=3e-18 Score=137.50 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++++.+... . . ..+|.......+.. .+..+.+|||||... +...+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~-~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~-----------~~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-M-Q---PIPTIGFNVETVEY-KNLKFTIWDVGGKHK-----------LRPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-C-C---cCCcCceeEEEEEE-CCEEEEEEECCCChh-----------cchHHHHH
Confidence 589999999999999999998743 1 1 23344444445555 677899999999653 22234445
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh----
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL---- 176 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 176 (311)
+.++|+++||+|++++-+-.+ ..++..+..... ....|+++|.||+|+... ...++. ..++..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~~~~ 131 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA--LSVEEM---------TELLSLHKLC 131 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC--CCHHHH---------HHHhCCcccc
Confidence 678899999999984422222 222222221111 112589999999997643 222221 111111
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..+.. ..+||+++.|+++++++|.+.+..
T Consensus 132 ~~~~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 132 CGRSWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CCCcEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1112222 136889999999999999876654
No 93
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=9.2e-18 Score=162.41 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=115.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH-
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC- 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~- 97 (311)
..++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.||||||+......... .+.+...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence 458999999999999999999999874212 23456777776666677 7889999999998643221110 1111111
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+++.+|++++|+|++++.+..+..++..+.. ...|+++|+||||+... ......... +...+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~~ 593 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDRV 593 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccCC
Confidence 1234678999999999998888888776665543 23599999999998754 222221111 11111111
Q ss_pred -CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 -DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 -~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+++ .+||.++.|+.+|++.+.+....
T Consensus 594 ~~~~ii------~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 TWARRV------NLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 11222 37999999999999999988765
No 94
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=4.9e-18 Score=138.71 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++..... ...+..+.......+.+ ++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE--STKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 479999999999999999999876521 11222222333334444 33 3678999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+.++|++|+|+|++++-+... ..++..+....+. ..|+++|.||+|+... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 445788999999999985433332 3344555554332 2589999999997744 2221111 12233333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.+++. +|+.++.|+++++..+.+.+..
T Consensus 136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFE------TSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444544 7888889999999998876643
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.79 E-value=6.9e-18 Score=134.06 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||+|++++.... .......+.......+.+ .+ ..+.+|||||... +....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--EKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQER-----------YHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHH-----------HHHhh
Confidence 48999999999999999999987652 122222222333333333 33 3688999999332 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+...... ..|+++|+||+|.... ..+.. ..+..+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~-------~~~~~~~~~~ 135 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSK-------SEAEEYAKSV 135 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCH-------HHHHHHHHHc
Confidence 344678999999999984433222 3344555554433 3599999999998744 22111 0123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|+.++.|+.++++++.+.+
T Consensus 136 ~~~~~~------~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 136 GAKHFE------TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 555544 67888899999999987643
No 96
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.79 E-value=2.6e-18 Score=137.43 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|||||||+++++..... .. ...|.........+. ....+.+|||||..... ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----------GL 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----------cc
Confidence 48999999999999999999865431 11 122333333332221 23478999999965421 11
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....+..+|++|+|+|++++.+... ..++..+....+ ..|+++|.||+|+... ..... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 2233678899999999985444333 345566666553 3699999999997633 11111 1122233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++++.+.+.+
T Consensus 132 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYYE------ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEEE------EeCCCCCChHHHHHHHHHHHHh
Confidence 3444554 7889999999999999876643
No 97
>PRK09866 hypothetical protein; Provisional
Probab=99.79 E-value=2.3e-16 Score=144.88 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=77.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
.++.|+||||+..+.. ..+...+.. .+..+|+|+||+|++...+..+..+++.+.+.. + ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~-K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVG-Q--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcC-C--CCCEEEEEEccc
Confidence 5889999999986421 223333333 467789999999998667888888888887632 1 138999999999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..+......+..... +...+..... .|....++||..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 874321112221111 2222222111 1222233899999999999998876
No 98
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.79 E-value=7.2e-18 Score=133.95 Aligned_cols=156 Identities=17% Similarity=0.151 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++.... ... .+++.......+.+ ++. .+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEY--DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCc--CCcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHHH
Confidence 68999999999999999999987642 111 11111112223334 443 577899999543 23333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+..+ ..++..+.+.... ...|+++|+||+|+... ...... ...+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence 445677899999999984333222 2344444443322 23599999999997653 211111 23333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +|+.++.|++++++.+.+.
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIPYIE------TSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence 555554 7888999999999988754
No 99
>PLN03110 Rab GTPase; Provisional
Probab=99.79 E-value=1.4e-17 Score=138.92 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=105.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|++|+|||||++++++...... ..+..........+.+ ++ ..+.||||||.. .+..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~-----------~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQE-----------RYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcH-----------HHHH
Confidence 458999999999999999999998765221 1222223333334444 33 388999999932 2444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|++|+|+|+++.-+... ..++..+....+. ..|+++|+||+|+... ..+... ....+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~--~~~~~~-------~~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS--NIVIMMAGNKSDLNHL--RSVAEE-------DGQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC--CCeEEEEEEChhcccc--cCCCHH-------HHHHHHH
Confidence 45556788999999999984433333 3455666655432 3599999999997543 221111 1223334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|++++++.+...+..
T Consensus 146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44555554 7888899999999998776643
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.79 E-value=4.9e-18 Score=135.06 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||+|++++........ +..+.......+.+ .+ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTV-DGKKVKLAIWDTAGQER-----------FRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhhh
Confidence 489999999999999999999876422212 22222222222333 33 4789999999542 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++.+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.... ....+ ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~ 135 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKH 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHc
Confidence 344678999999999984433333 334555555443 2346899999999987331 11111 22333334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. .|+.++.|+.++++.+.+
T Consensus 136 ~~~~~~------~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 136 NMLFIE------TSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CCEEEE------EecCCCCCHHHHHHHHHH
Confidence 444544 688888999999988765
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.79 E-value=5.2e-18 Score=135.33 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+|+|.+|+|||||+|++++.... .... +++.......+.. ++ ..+.+|||||..+. ....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-----------~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV-DDYD--PTIEDSYRKQIEI-DGEVCLLDILDTAGQEEF-----------SAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC-cccC--CchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------hHHH
Confidence 47999999999999999999987642 2111 1121222223333 33 36789999996542 1222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..+...+.+.... ...|+++|.||+|+... ..+... ....+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 135 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE-------EGKELARQW 135 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH-------HHHHHHHHc
Confidence 334667899999999984433222 2333344443322 23599999999997653 211110 123334444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|++++++.|.+.+
T Consensus 136 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 136 GCPFLE------TSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCEEEE------eecCCCCCHHHHHHHHHHHH
Confidence 555555 78888999999999988655
No 102
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=9.9e-18 Score=139.21 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|++++... .....++.+.......+.+.++ ..+.||||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~--~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRF--AEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC--CCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 47999999999999999999998764 2222222222333333333223 3788999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+-.. ..++..+...... ...|+++|.||+|+... ..+.. .....+...
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~ 138 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKD 138 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHH
Confidence 4455788999999999985433232 3444444444332 23478999999997653 22111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..++. +|+.++.|+.++++.|.+.+..
T Consensus 139 ~~~~~~e------~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 139 LGMKYIE------TSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred hCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 5555554 6888899999999999876654
No 103
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.79 E-value=9.5e-18 Score=134.94 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeE-EEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~-~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+... +... ..|... ....+.+ ++ ..+.||||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF-PDYH---DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCc---CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 7899999999999999999987654 2111 112211 1223344 44 3688999999543 3444
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++.+... ..+...+..... ....|+++|.||+|+... ..+... ....+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~-------~~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTE-------EGRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHH-------HHHHHHHH
Confidence 5556788999999999986655444 234445554322 123599999999997644 222211 12333344
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +||.++.|++++++++...+.
T Consensus 137 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 137 FNCPFFE------TSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred hCCEEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 4555554 788899999999999986554
No 104
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=3.1e-18 Score=136.26 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++++++...+..... +|.......+.. .+..+.+|||||... +...+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 589999999999999999998653222111 222222333444 677899999999543 33344456
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-CCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+.++|++|||+|++++.+... ...+..+..... .....|+++|+||+|+... ....+.... .. +..+ . ..
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-l~--~~~~-~--~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-LG--LENI-K--DK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-hC--Cccc-c--Cc
Confidence 788999999999985433221 223333322111 1124699999999997654 222111110 00 0000 0 11
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.+.. ..+||.++.|+++++++|.
T Consensus 138 ~~~~----~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWHI----FASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEEE----EEeeCCCCCchHHHHHHHh
Confidence 1111 2378899999999999885
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=5.5e-18 Score=133.84 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|++++...... ..+..+.......+... ....+.+|||||... +.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN--YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc--cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence 4799999999999999999998875322 11111222222222221 235788999999532 333444
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+..+|++++|+|++++-+... ..++..+..... ...|+++++||+|.........+ . +..+....+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~~ 136 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTE-E--------AQQFAKENG 136 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHH-H--------HHHHHHHcC
Confidence 55778999999999984322222 334555554432 23599999999998633111111 1 233444445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..++. .|+.++.|+.+++.+|.
T Consensus 137 ~~~~~------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 137 LLFFE------TSAKTGENVEELFQSLA 158 (159)
T ss_pred CeEEE------EecCCCCCHHHHHHHHh
Confidence 55554 67777889999998874
No 106
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=9e-18 Score=133.66 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++.+++....+. ..+..+.......+.. .+ ..+.+|||||... +....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~ 66 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTIT 66 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhH
Confidence 4799999999999999999998765221 1122222222233444 33 3678999999432 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+-.. ..++..+..... ...|+++|.||.|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~--~~v~~~-------~~~~~~~~~ 135 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQK--RQVGDE-------QGNKLAKEY 135 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc--cCCCHH-------HHHHHHHHc
Confidence 445788999999999985433222 344444444432 23599999999997644 222111 123333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +||.++.|+++++.+|.+.
T Consensus 136 ~~~~~e------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 136 GMDFFE------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHhh
Confidence 544544 7888889999999998754
No 107
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.78 E-value=5.2e-18 Score=135.38 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+++++.... .... .+++.......+.. ++ ..+.+|||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKY--DPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Cccc--CCcchheEEEEEEE-CCEEEEEEEEECCCccc-----------chhHH
Confidence 6899999999999999999986543 2211 12221121223344 43 3667999999643 33333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++++|+|.+++-+..+ ..++..+..... ....|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE--RVVGKE-------QGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc--cEEcHH-------HHHHHHHHh
Confidence 445778899999999874433222 334444443322 233599999999998644 221110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +||.++.|+.+++.++.+.+
T Consensus 137 ~~~~~~------~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFLE------TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEE------eeCCCCCCHHHHHHHHHHHh
Confidence 555554 78889999999999987654
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.78 E-value=1.9e-17 Score=133.03 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||+|++++...... ..+..+.......+.+ .+. .+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 4899999999999999999998764211 1122222233333444 443 567999999532 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++|++|||+|++++.+... ..+...+...+.. ....|+++|+||+|+..+.....+. ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence 445788999999999985433222 2233333332321 1235999999999987431112221 233344
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..++. .|+.++.|+.++++.|.+.+.+
T Consensus 138 ~~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYFE------TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 444 34444 6888899999999998876543
No 109
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.9e-18 Score=130.71 Aligned_cols=163 Identities=16% Similarity=0.144 Sum_probs=118.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...+|+|+|..++||||||++......- ..-.+....+.....+.+ .++ .+.||||.| ++++..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l-~d~~vrLQlWDTAG-----------QERFrs 86 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG-----------QERFRS 86 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhc--ccccceeeeEEEEEEEEE-cCcEEEEEEEeccc-----------HHHHhh
Confidence 4489999999999999999999866541 122233344455555555 554 889999999 678999
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..+++++.++|.|+|++++-+-+. ..|++-+.+..|.+. ..+++|.||.|+.++ ..+..... .....
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~eEg-------~~kAk 156 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSIEEG-------ERKAK 156 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhHHHH-------HHHHH
Confidence 99999999999999999986655443 677777777676632 368899999999977 43332211 22334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+.-|.. +||+.+.++..|+..|...++.
T Consensus 157 el~a~f~e------tsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 157 ELNAEFIE------TSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HhCcEEEE------ecccCCCCHHHHHHHHHHhccC
Confidence 44555544 7889999999999999887754
No 110
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.78 E-value=4.3e-18 Score=138.39 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=95.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++++.... ... +..+.......+... .+..+.+|||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTV--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcC--CccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 589999999999999999999876542 111 111112222222211 345899999999432 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|+++||+|++++-+..+ ...+..+...... ...|+++|+||+|..... ...+..+... .....
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~~~~~~~~~~~~------~~~~~ 141 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNALSVSEVEKLLAL------HELSA 141 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccCCHHHHHHHhCc------cccCC
Confidence 4555788999999999984322222 2233333332221 246999999999976430 0111111110 00000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++ ++||.++.|+++++.+|.+.+
T Consensus 142 ~~~~~~~------~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQ------PACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEE------EeecccCCCHHHHHHHHHHHH
Confidence 0011122 378899999999999998766
No 111
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=4.5e-18 Score=137.89 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||++++..... ... .+|.......+.. .+..+.||||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTT----IPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-ccc----cCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHH
Confidence 4568999999999999999999986543 111 2233333444555 67889999999932 34455
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ....+...+... ...|++||.||+|+... ...++... .+.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence 5666889999999999984432222 222333332211 13589999999997654 22222111 111
Q ss_pred hc--CCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LC--DNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~--~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ..+ ++. ..+||.++.|+.+++++|.+.+.
T Consensus 145 l~~~~~~~~~~----~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYI----QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEE----EeccCCCCCCHHHHHHHHHHHHh
Confidence 10 111 111 13688999999999999987653
No 112
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.78 E-value=9.6e-18 Score=152.93 Aligned_cols=124 Identities=21% Similarity=0.254 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.||+|||||+|+|++.....+ ...+++|.......+.+ ++..+.+|||||+.++. +.+...-...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHH
Confidence 3458999999999999999999999763212 23467788877777888 88899999999987642 1111111122
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
...++..+|++++|+|++++.+..+. ++..+.. ...|+++|+||+|+..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 23456789999999999866665554 4433322 1359999999999753
No 113
>PLN03118 Rab family protein; Provisional
Probab=99.78 E-value=1e-17 Score=139.28 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=102.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.+....++|+|+|.+|+|||||+++|++... ... .+..+.......+.+ ++ ..+.||||||...
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------- 74 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTV-GGKRLKLTIWDTAGQER---------- 74 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEE-CCEEEEEEEEECCCchh----------
Confidence 3444568999999999999999999998764 221 122222333333444 33 4789999999544
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+......+++.+|++|+|+|++++-+.... .+...+.. .......|+++|.||+|+... ..+... ..
T Consensus 75 -~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~-------~~ 143 (211)
T PLN03118 75 -FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE-------EG 143 (211)
T ss_pred -hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH-------HH
Confidence 233334457788999999999854333332 12233332 222233589999999997644 222110 11
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+..++. +|+.++.|+++++..|...+..
T Consensus 144 ~~~~~~~~~~~~e------~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 144 MALAKEHGCLFLE------CSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 2233333444444 7888889999999999977644
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=8.9e-18 Score=133.96 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+.. .++... .+.....+....+... ....+.+|||||. +.+...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-----------~~~~~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY-LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ-----------ELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccC-CCceEEEEEEEEEEeCCCCEEEEEEEECCCH-----------HHHHHH
Confidence 489999999999999999998642 232221 1111112222223221 2358999999993 223344
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+...+..+|+++||+|++++-+... ..++..+.... ...|+++|+||+|+... ..+.... ...+...
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 136 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFAQA 136 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHHHH
Confidence 4455788999999999984433222 34444444432 23599999999997654 2222111 1222233
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+..++. +|+.++.|+.++++.+.+.
T Consensus 137 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 137 NQLKFFK------TSALRGVGYEEPFESLARA 162 (164)
T ss_pred cCCeEEE------EeCCCCCChHHHHHHHHHH
Confidence 3434444 7888899999999988764
No 115
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=3.1e-18 Score=141.32 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=114.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++.+|+++|.||+|||||||+|++....+. ...+.++....+.....++..++||||||++|....+.+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~---- 109 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQ---- 109 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHH----
Confidence 44678999999999999999999996554222 212222222222222227789999999999996555444444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC----------ChhcHHHHhhhcC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED----------NDETLEDYLGREC 166 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~~~~~~~~~~ 166 (311)
.+..+++..|++++++++.+|.-..+..+++-+.-.+.. +++++++|.+|...+ ....+.+++.. .
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k 185 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K 185 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence 444456777999999999878767777776666554432 699999999998744 12344444443 1
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+..++.. -.+++. .+....-|++.|...+...++.+
T Consensus 186 ~~~~~~~~q~-V~pV~~------~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 186 AEALGRLFQE-VKPVVA------VSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHhh-cCCeEE------eccccCccHHHHHHHHHHhCccc
Confidence 1112222222 111222 34566678999999999888653
No 116
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.78 E-value=6.4e-18 Score=135.99 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=112.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC-----CCCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG-----SSGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-----~~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~~~~~~~ 91 (311)
.++|.|+|.+|.||||++|+|+...+..+... +...|+........+. ++. +++++|||||+|.- .++..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 48999999999999999999987665433222 2234544444433332 232 88999999999963 344555
Q ss_pred HHHHHHHHhc------------------cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 92 KEIVKCIGMA------------------KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 92 ~~~~~~~~~~------------------~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+.|..++... ...+||++|++..+ +.+++.|.++|+.|.+.. +++.|+.|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence 5555444321 14589999999886 899999999999999864 8999999999886
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
- +...+|.+. +++-+...+..+++++...
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCcccccccccc
Confidence 6 666666665 7777888888888866554
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=1.1e-17 Score=133.73 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.+|+++|.+|+|||||+|++++... +.... ...... ...... ..+..+.+|||||.... ...+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~--~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 65 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF-PENVP--RVLPEI-TIPADVTPERVPTTIVDTSSRPQD-----------RANLA 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC-CccCC--Ccccce-EeeeeecCCeEEEEEEeCCCchhh-----------hHHHh
Confidence 3799999999999999999998764 22111 111111 111111 13457889999996542 11122
Q ss_pred hccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChh-cHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 176 (311)
..+..+|++++|+|++++-+... ..++..+..... ..|+++|+||+|+.+.... .+++. +..+...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~ 134 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV---KVPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNE 134 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcccccchhHHHHH--------HHHHHHH
Confidence 33578899999999985444333 245555665432 3599999999998654111 11111 1122222
Q ss_pred cC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.. ..++ .+||.++.|+++++..+...+
T Consensus 135 ~~~~~~~~------e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 135 FREIETCV------ECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HhcccEEE------EeccccccCHHHHHHHHHHHh
Confidence 11 1333 378889999999999887654
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=2.5e-18 Score=136.58 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|++++..... . .+|.......+....+..+.+|||||... +...+..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~---~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--T---IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--c---cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 58999999999999999999877521 1 12222333334442456899999999542 33334445
Q ss_pred cCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|+++||+|++++.+.. ...+...+.... ....|+++|+||+|+... ....+.... .. ...+....+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~ 137 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH--IKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSDRDW 137 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh--hcCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCCCcE
Confidence 77889999999998443222 222222222111 123599999999997543 222211111 00 0111111111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++ .+||.++.|+++++++|.+
T Consensus 138 ~~~------~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQ------PCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEE------ecccccCCChHHHHHHHhc
Confidence 222 3788999999999998854
No 119
>PTZ00369 Ras-like protein; Provisional
Probab=99.78 E-value=9.6e-18 Score=137.06 Aligned_cols=160 Identities=19% Similarity=0.110 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||++++.+........+..+. .....+.+ ++ ..+.+|||||..+. ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIED---SYRKQCVI-DEETCLLDILDTAGQEEY-----------SAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhh---EEEEEEEE-CCEEEEEEEEeCCCCccc-----------hhh
Confidence 489999999999999999999986542111111111 11222333 33 36789999997652 222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..+++++|++++|+|++++-+-.. ..+...+.+.... ...|+++|.||+|+... ..+.... .......
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~ 139 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS 139 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 3345778999999999985443222 3344445443322 23589999999997543 2221110 1222333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +||.++.|+.+++.++.+.+.
T Consensus 140 ~~~~~~e------~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 140 FGIPFLE------TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred hCCEEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 3444444 788899999999999876653
No 120
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.78 E-value=1.1e-17 Score=137.22 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee--EEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT--CEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~--~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
++|+|+|.+|+|||||++++++.... ... ...|.. .....+.. ++. .+.+|||||... +..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER-----------YEA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 48999999999999999999987642 111 112222 22223344 444 567999999543 222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++.++|+++||+|++++-+... ..++..+.... ...|+++|+||+|+.... .... .+. ...+..+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~-~v~---~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQD-RSLR-QVD---FHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccc-cccC-ccC---HHHHHHHHH
Confidence 23344678999999999984432222 34555555432 235999999999976431 0000 000 011233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +|+.++.|++++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 138 EIKAQHFE------TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44555544 688888999999999987664
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=5.5e-18 Score=136.66 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=95.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+..+|+++|.+|+|||||++++++..... . .+|.......+.+ .+..+.+|||||... +...+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~---~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 76 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH--T---SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW 76 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence 45899999999999999999998765421 1 2233333445555 678899999999543 33334
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-HHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-EILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 176 (311)
..++.++|+++||+|++++-+... ...+..+.+..+ ....|+++++||+|+... ...++.... +. ..+..
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~~~~~~~ 148 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-----LGLTSIRD 148 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-----hCcccccC
Confidence 455778999999999984322111 222222221111 123599999999997643 122211111 00 00011
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
...+++ ++||.++.|+++++++|.
T Consensus 149 ~~~~~~------~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 149 HTWHIQ------GCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CceEEE------ecccCCCCCHHHHHHHHh
Confidence 111222 378889999999999885
No 122
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.78 E-value=2.4e-17 Score=131.62 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=102.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH---H
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI---G 99 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~---~ 99 (311)
|+++|.+|+|||||+|+|++....+......+.|....... + +..+++|||||+.+..... .....+...+ .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--V--NDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--c--cCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence 79999999999999999996544333333445554443332 2 3389999999998754321 1112222222 2
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH--hc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ--LC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 177 (311)
.....++++++++|.+...+.....+++++... + .|+++|+||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 223457899999999866566666666666653 2 489999999998755 333322222 233332 22
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..++++ .|+.++.++.+++++|.++
T Consensus 145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIIL------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEE------EecCCCCCHHHHHHHHHHh
Confidence 334444 6777788999999988764
No 123
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=2.1e-17 Score=134.10 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++... ... ..+..........+.. ++ ..+.||||+|... +...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~~~-~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-DED-YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC-CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHhh
Confidence 4799999999999999999987654 221 1122222222233444 44 4789999999432 33445
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-hcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..+++++|++++|+|++++-+..+ ..++..+...... ..| ++|.||+|+..... ........ ....+...
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~--~~p-ilVgnK~Dl~~~~~~~~~~~~~~-----~~~~~a~~ 138 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT--AIP-ILVGTKYDLFADLPPEEQEEITK-----QARKYAKA 138 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCE-EEEEEchhccccccchhhhhhHH-----HHHHHHHH
Confidence 556889999999999985544433 3455555554332 235 68899999863210 11000111 13344444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..++. +||.++.|+++++.++.+.+.
T Consensus 139 ~~~~~~e------~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 139 MKAPLIF------CSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4555544 788999999999999887654
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=2.7e-17 Score=131.84 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=98.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...+|+++|++|+|||||++++++....+. ..++.+.......+.+ .+ ..+.+|||||... +..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 348999999999999999999987654211 1122222333334444 44 3578899999532 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|+++..+... ..++..+...... ..|+++|.||+|+... ..+..... ..+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~--~~i~~~~~-------~~~~~ 140 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAER--REVSQQRA-------EEFSD 140 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCHHHH-------HHHHH
Confidence 33445778999999999984433222 2444455554432 2489999999997644 22211111 11222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....++. +|+.++.|+.++++.|.+.
T Consensus 141 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 141 AQDMYYLE------TSAKESDNVEKLFLDLACR 167 (169)
T ss_pred HcCCeEEE------eeCCCCCCHHHHHHHHHHH
Confidence 22333443 7888899999999998764
No 125
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=1.3e-17 Score=135.96 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+|+|.+|+|||||++++++... +... ..|....+. .+...++ ..+.||||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~~~~---~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-PEEY---VPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-CCCC---CCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4899999999999999999998764 2111 122222221 2333112 3689999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++.++|++|+|+|++++-+-.+. .++..+.... ...|+++|.||+|+... ......+ .......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~v---~~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD--KNLDRKV---TPAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC--ccccCCc---CHHHHHHHHH
Confidence 34457889999999999854443332 2444444322 23599999999997643 1110000 0111334444
Q ss_pred hcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+. .++. +|+.++.|+.+++..+...+.
T Consensus 138 ~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 138 KQGAFAYLE------CSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HcCCcEEEE------ccCCCCCCHHHHHHHHHHHHH
Confidence 4454 4443 788889999999999887653
No 126
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.1e-17 Score=135.82 Aligned_cols=171 Identities=21% Similarity=0.185 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+|+|+|......+..+.+ +|.....+ .......+.+|||||+.+.....++....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~~~l~~---- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDYLEE---- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence 7899999999999999999999653222222222 22222222 11123578999999998764433322221
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChh-------cHHHHhhhcCCchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-------TLEDYLGRECPKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~~~~~~~~~~~~~~ 170 (311)
..+.++|++++|.+ .+++..+..+++.+... + .|+++|+||+|....... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 12567899998854 47888888888888874 3 489999999998643110 12233332 12224
Q ss_pred HHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+...+ ..+++.+... ..+.++..|.+.+...+++
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~----~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFD----PSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCC----hhhcChHHHHHHHHHHhhH
Confidence 44444322 3455532221 1346788888888777754
No 127
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=7.2e-18 Score=136.87 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||++++..... .. . .+|.......+.. .+..+.+|||||... +...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~-~~-~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEV-VT-T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-cc-c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 4458999999999999999999965443 11 1 1233333444555 677899999999532 4444
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|++|||+|++++-+-.+ ....+.+.+... ...|+++|+||.|+... ....+.... +. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence 5566889999999999984322221 122233332221 23589999999997543 222211111 00 00
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+. ..++. ..+||.++.|+++++++|.+.+.
T Consensus 147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHH
Confidence 111 11222 13688899999999999987653
No 128
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=3.3e-17 Score=131.58 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH-H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV-K 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~-~ 96 (311)
.++|+++|++|+|||||++++++... +.. ..+..+.......+.+ .+ ..+.||||||..+ +. .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~-~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PER-TEATIGVDFRERTVEI-DGERIKVQLWDTAGQER-----------FRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCc-cccceeEEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHHh
Confidence 37999999999999999999987653 111 1122222233334444 44 4789999999432 22 1
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+... ..+... ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~-------~~~~~~~ 137 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ--IQVPTD-------LAQRFAD 137 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh--cCCCHH-------HHHHHHH
Confidence 23445788999999999985444333 3444445443321 23599999999997644 221110 1122333
Q ss_pred hcCCcEEEecCCchhhhhh---HHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKR---TEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~---~~~i~~l~~~i~~~~ 209 (311)
.....++. +||.+ +.++.+++..+.+.+
T Consensus 138 ~~~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 33444544 56665 677888887776543
No 129
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.77 E-value=4.9e-18 Score=134.87 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+++|.+|+|||||++++..... .. . .+|.......+.. ....+.+|||||... +...+..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~~-~---~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~ 63 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-VT-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-cc-c---CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence 3799999999999999999965543 22 1 1222233333444 667899999999542 3444555
Q ss_pred ccCCccEEEEEEECCCCCC--hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFS--KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++|||+|++++.+ .....+...+..... ...|+++++||+|+... ....+...... +..+ . +
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~~~---~~~~-~--~ 133 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNA--MSAAEVTDKLG---LHSL-R--N 133 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCC--CCHHHHHHHhC---cccc-C--C
Confidence 6889999999999984322 222222222221111 12599999999997543 22222111100 0000 0 1
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+++ ..+||+++.|+++++++|.
T Consensus 134 ~~~~~----~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWYI----QATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEEE----EEeeCCCCCCHHHHHHHHh
Confidence 11111 2368899999999999875
No 130
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.77 E-value=3.6e-18 Score=141.55 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEEeeCCceE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTMLKAGQVV 72 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~~l 72 (311)
+|+++|++|+|||||+|+|++....... ....+.|.......+.+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999865432110 00156777777777777 88899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.||||||+.+ +...+..++..+|++|+|+|++.+....+...+..+.. .+. .++|+|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999643 22223334678899999999986666555554444433 332 36888999999864
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCc---EEEecCCchhhhhhHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNR---CVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~~~~sa~~~~~i~~ 200 (311)
............ +..++...+.. +++ +||.++.|+.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~~ii~------iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDITFIP------ISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCceEEE------EeCCCCCCCcc
Confidence 321222222222 45555555532 344 67777777664
No 131
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=1.3e-17 Score=136.95 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc-cccccC-------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK-AFMSKA-------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~-------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..+|+++|.+|+|||||+|+|++.. .+.... ...+.|.......+.+ .+..+.+|||||..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH---
Confidence 3689999999999999999998631 221111 1134555555556666 778999999999654
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+...+..++.++|++++|+|++++.......++..+.. ...|+++|+||+|+...
T Consensus 78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 33344455778899999999985544444444444332 12589999999998644
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=7.2e-18 Score=135.72 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|++|+|||||+++|.+.... . ...|.......+.+ .+..+.+|||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~--~---~~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS--H---ITPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc--c---cCCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 34699999999999999999999987531 1 11222233344555 678899999999432 3344
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++.++|++++|+|+++.-+... ...+..+.+... ....|+++++||+|.... ....+.... + .+. .
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l-~~~-~ 144 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA--APAEEIAEA-----L-NLH-D 144 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC--CCHHHHHHH-----c-CCc-c
Confidence 4455778999999999984321111 122222211111 123599999999998654 333332221 0 000 0
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...+...+ ..+||.++.|+++++++|.+
T Consensus 145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHI---QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence 01111111 24688999999999999853
No 133
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=1.9e-17 Score=137.68 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||++++++.... . . ..|.........+ ....+.||||||... +......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~-~---~~Tig~~~~~~~~-~~~~l~iwDt~G~e~-----------~~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-D-T---VSTVGGAFYLKQW-GPYNISIWDTAGREQ-----------FHGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-C-C---CCccceEEEEEEe-eEEEEEEEeCCCccc-----------chhhHHH
Confidence 47999999999999999999987642 1 1 2233333333334 456799999999653 2222334
Q ss_pred ccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChh---------cHHH-HhhhcCCch
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDE---------TLED-YLGRECPKP 169 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~---------~~~~-~~~~~~~~~ 169 (311)
+++.+|++|+|+|++++-+-... .++..+.+.... ..|+++|.||+|+...... .+.. .........
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 47889999999999855443332 233334433322 3589999999998651000 0000 000001112
Q ss_pred HHHHHHhcC--------------CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD--------------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~--------------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++ .+||.++.|+++++..+.+.+
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~------E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCF------ETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 334444433 1233 478999999999999888655
No 134
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=4.2e-18 Score=135.10 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||++++...... .. ..|.......+.+ .+..+.+|||||..+ +...+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT---IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc---CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 5899999999999999999776542 11 1233333344455 677899999999653 33344555
Q ss_pred cCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|++|||+|++++.+.. ...+...+.... ....|+++|+||+|+... ....+.... .. .. .....+.
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~~~ 135 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA--LSEAEISEK-LG--LS-ELKDRTW 135 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC--CCHHHHHHH-hC--cc-ccCCCcE
Confidence 77899999999998432211 222222332211 123699999999997644 222211111 00 00 0000111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++ ++|+.++.|++++++++.+
T Consensus 136 ~~~------~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIF------KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEE------EeeccCCCCHHHHHHHHhc
Confidence 233 3788999999999998753
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=4.9e-18 Score=137.47 Aligned_cols=159 Identities=21% Similarity=0.197 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc------cC-C------CCCcceeEEEEEEEee----CCceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMS------KA-G------SSGVTKTCEMQRTMLK----AGQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~------~~-~------~~~~T~~~~~~~~~~~----~~~~l~liDTPG~~~~ 83 (311)
.+|+++|++|+|||||+++|++...... .. . ..+.|.......+.+. .+..+.||||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 3799999999999999999987431100 00 0 1123333332223221 3457889999997652
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...+..++.++|++|+|+|++++.+..+...+..+.. ...|+++|+||+|+... . .....
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~--~-~~~~~- 140 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSA--D-PERVK- 140 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcC--C-HHHHH-
Confidence 2233344667899999999986665555444433322 12589999999997543 1 11111
Q ss_pred hcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+... .....+|+.++.|+++|++++...+
T Consensus 141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 11222222210 0112378899999999999998754
No 136
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=5.3e-18 Score=137.98 Aligned_cols=163 Identities=10% Similarity=0.037 Sum_probs=97.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|.+|||||||+|++.+.... .. .+|.......+.+ .+..+.+|||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QH---QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 45699999999999999999999987541 11 1222233344455 678899999999543 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++.++|+++||+|++++-+-.. ...+..+.+.. .....|+++|+||+|+... ....+.+.+.- .....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 4566789999999999984321111 12222222111 0123599999999997543 11222222221 10000
Q ss_pred hc---CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+ +.+. .....+|+.++.|+++++++|.+
T Consensus 151 ~~~~~~~~~---~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRP---LEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCce---eEEEEeecccCCChHHHHHHHHh
Confidence 00 1111 11234788889999999999864
No 137
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=5.4e-18 Score=141.19 Aligned_cols=199 Identities=18% Similarity=0.175 Sum_probs=124.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH-HHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE-FVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~-~~~~~~~~ 96 (311)
...++|+|+|.||+|||||.|.+.|..+++ .+....|+......+-..+..++.++||||+.....-.. .....+.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~--vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA--VSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccc--ccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 356899999999999999999999999844 444556666666655554777999999999987542211 11111222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH----H
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK----E 172 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~----~ 172 (311)
-...+...+|+++.|+|+++.-.......|..++.+.. .|-++|+||+|.+... ..+-+.+....+..+. +
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhh-hHHhhhHHhccccccchhhhh
Confidence 22344567899999999984333334566777776643 3899999999987441 1111111111111111 1
Q ss_pred HHHhcC-Cc----------EEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 021534 173 ILQLCD-NR----------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAE 224 (311)
Q Consensus 173 ~~~~~~-~~----------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~ 224 (311)
+-.... .+ ...|......||+.+.|+++|.+++....+. +.+.|+..+..+
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i~T~ 284 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADIVTE 284 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCcccccc
Confidence 111110 01 1123333448999999999999999987654 666676655443
No 138
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.3e-17 Score=133.60 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|||||||+|.+.+.. .... .+|.......+.+ .+..+.+|||||.. .+...+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~~-~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLRL-DKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEEE-CCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 48999999999999999999862 2221 1222233344555 77889999999943 244445667
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+..+|+++||+|++++.+..+ ..++..+..... ....|+++|+||+|+... ....+..... .+..+....+.+
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCce
Confidence 889999999999984432222 233333332111 124699999999997655 3333322220 122222222323
Q ss_pred EEEecCCchhhhhhH------HHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRT------EQVGKLLSLVNS 207 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~------~~i~~l~~~i~~ 207 (311)
++.+ .+||.++ .|+.+.++||..
T Consensus 138 ~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIE----PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEE----EeEceeCCCCccccCHHHHHHHHhc
Confidence 3332 2566666 789999999853
No 139
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.76 E-value=3.3e-17 Score=131.52 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=98.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+++|.+|+|||||++++++...... ..+..+.......+.+ ++. .+.||||||. +.+.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~-----------~~~~ 68 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQ-----------ERFR 68 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEE-CCeEEEEEEEeCCCh-----------HHHH
Confidence 3558999999999999999999998664221 1122222222233444 333 6789999993 2344
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.....++..+|++++|+|++++-+... ..+...+...... ....|+++|.||+|+.... .... .+..
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~---------~~~~ 138 (170)
T cd04116 69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE---------EAQA 138 (170)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH---------HHHH
Confidence 445556788999999999984433222 2344444443321 1235999999999976321 1111 1334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+....+. .++. +|+.++.|+.+++..+.+
T Consensus 139 ~~~~~~~~~~~e------~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 139 WCRENGDYPYFE------TSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHCCCCeEEE------EECCCCCCHHHHHHHHHh
Confidence 4444442 3333 688888999999988764
No 140
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.76 E-value=1.4e-17 Score=132.69 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++...... . .++........+.. ++. .+.||||||.... ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-Y--DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-C--CCchhheEEEEEEE-CCEEEEEEEEECCCcccc-----------cchH
Confidence 7899999999999999999987764221 1 11111222233444 443 5789999996542 2223
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++++|+|++++-+-.+ ..++..+..... ....|+++|+||+|+... ..+... ....+....
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSA-------EGRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHH-------HHHHHHHHh
Confidence 334678899999999985433222 344455554432 134699999999997643 221110 012223333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+..++. +||.++.|+.+++.++.+.
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCPFME------TSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHh
Confidence 444444 6888899999999988653
No 141
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=1.2e-17 Score=132.48 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|++++... .. ...|.......+.+ .+..+.+|||||... +...+..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VT----TIPTIGFNVETVEY-KNVSFTVWDVGGQDK-----------IRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CC----CCCCcCcceEEEEE-CCEEEEEEECCCChh-----------hHHHHHHH
Confidence 589999999999999999998863 11 12233333444555 677899999999553 22333445
Q ss_pred cCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH-HHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI-LQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 179 (311)
+..+|++++|+|++++-+... ...+..+..... ....|+++++||+|.... ....+.... +... ......
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~ 135 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEKILGRRW 135 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhhccCCcE
Confidence 678899999999984322111 222222222111 123599999999998755 322222111 0000 000111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++. .|+.++.|+.++++.|..
T Consensus 136 ~~~~------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQP------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEE------eeCCCCCCHHHHHHHHhh
Confidence 2333 688888999999988753
No 142
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.76 E-value=3.3e-17 Score=132.14 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||++++.+... +... .+|....+. .+.+ ++ ..+.||||||... +...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~---~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEY---VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED-----------YDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCC---CCceeeeeEEEEEE-CCEEEEEEEEECCCccc-----------hhhh
Confidence 6899999999999999999997653 2211 122222221 3334 44 4788999999654 2222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~ 170 (311)
...++.++|++|+|+|++++-+-... .++..+....+ ..|+++|.||+|+... ..+.+.+.... ....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 33457889999999999855443332 35555655432 3599999999997644 22222221100 1112
Q ss_pred HHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 171 KEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 171 ~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..+....+ ..++. +||.++.|++++++.+..
T Consensus 141 ~~~a~~~~~~~~~e------~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 141 EKLARDLKAVKYVE------CSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHhCCcEEEE------ecCCCCCCHHHHHHHHHH
Confidence 23333334 34554 788999999999988765
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.76 E-value=1.1e-17 Score=136.90 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|++|||||||+|++.+.... .. .+|.......+.+ .+..+.+|||||... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~---~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QH---VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--cc---CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 34589999999999999999999986541 11 1233333445556 678899999999432 2333
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCch--HHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELED-NDETLEDYLGRECPKP--LKE 172 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~--~~~ 172 (311)
+..++.++|+++||+|+++.-+-.. ....+...... ....|+++++||+|+... ....+..++....... ...
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~~--~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQE--SKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHH--HHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccc
Confidence 4455788899999999984311111 11222222221 133699999999997643 1122222222100000 000
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.......+. ...+||.++.|+.+++++|.+.
T Consensus 158 ~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 0001111111 1247899999999999998764
No 144
>PLN03108 Rab family protein; Provisional
Probab=99.76 E-value=6.8e-17 Score=134.18 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++....+. ..+..+.......+.+ ++ ..+.+|||||... +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 348999999999999999999998764222 1122222222223334 33 3678999999432 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++|+|+|++++-+... ..++..+..... ...|+++|.||+|+......... ....+..
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTE---------EGEQFAK 139 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHH---------HHHHHHH
Confidence 33445678999999999984333222 244444444332 23589999999997654111111 1223334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.++.+++.++...+
T Consensus 140 ~~~~~~~e------~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 EHGLIFME------ASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 44544444 67888899999988777554
No 145
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=3.5e-17 Score=142.36 Aligned_cols=168 Identities=23% Similarity=0.193 Sum_probs=118.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+.+.|+++|.||+|||||+|+|++...+. ......|-+.....+.+.+++.+.+.||-||.+ .-...+-..|.+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKS 264 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHH
Confidence 3577899999999999999999999988743 334556777777777775689999999999987 334455555665
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+.. ...+|+++.|+|++++.-... ......|.++--.+ .|+++|+||+|.+.+ ......+. .
T Consensus 265 TLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~-----------~ 328 (411)
T COG2262 265 TLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELE-----------R 328 (411)
T ss_pred HHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhh-----------h
Confidence 5544 357899999999996633333 34444555532222 699999999998866 22111111 1
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+ ..+ ..||.++.|++.|.+.|...+..
T Consensus 329 ~~~-~~v------~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 329 GSP-NPV------FISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCC-CeE------EEEeccCcCHHHHHHHHHHHhhh
Confidence 111 222 36999999999999999998864
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.76 E-value=1.3e-17 Score=133.80 Aligned_cols=162 Identities=17% Similarity=0.075 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||+|+|++.... ....+. ............ ....+.+|||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPT--VFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--eeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 58999999999999999999987742 111111 111112222221 23478999999976421 1112
Q ss_pred hccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh----hhcCCchHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL----GRECPKPLKEI 173 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~----~~~~~~~~~~~ 173 (311)
..+..+|++++|+|++++-+.. ...++..+....+ ..|+++|+||+|+... ....... ..........+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence 2357789999999998433322 2344555554333 3699999999998765 2221100 00000112333
Q ss_pred HHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+. .++. .|+.++.|+.++++.|.+
T Consensus 142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGYME------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEEEE------eecCCCCCHHHHHHHHhh
Confidence 344343 4444 688888999999998764
No 147
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=2.4e-17 Score=134.69 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|.+|+|||||++++++.... .... .|....+ ..+.. ++ ..+.||||||... +...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~-~~~~---~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~-----------~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFP-QVYE---PTVFENYVHDIFV-DGLHIELSLWDTAGQEE-----------FDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CccC---CcceeeeEEEEEE-CCEEEEEEEEECCCChh-----------cccc
Confidence 37999999999999999999987642 1111 1221111 12223 33 4789999999543 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CCchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~~~ 170 (311)
...++..+|++++|+|++++-+... ..++..+..... ..|+++|.||+|+... ....+..... .....
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 3345788999999999985543332 245666665432 3599999999998654 2222111100 00011
Q ss_pred HHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+....+ ..++. +||.++.|+++++.++.+.+.
T Consensus 140 ~~~~~~~~~~~~~e------~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 140 LAVAKRINALRYLE------CSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHcCCCEEEE------ccCCcCCCHHHHHHHHHHHHh
Confidence 23333333 23443 788999999999999987664
No 148
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=1.2e-17 Score=153.08 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC---------------CCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA---------------GSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~---------------~~~~~T~~~~~~~~~~~ 67 (311)
..+.++|+++|++++|||||+|+|++...... +. ...|.|.......+.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 35679999999999999999999985432111 00 1367888888888888
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
++..+.||||||+.+.. ......+..+|++++|+|+++ .+...+...+..+.. .+. .|+++++
T Consensus 82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 88899999999975421 112223467899999999986 565556565555543 332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+...... +..++..++. ++++ +||.++.|+.+
T Consensus 147 NK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~~~ii~------iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDDIPFIP------VSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHH-----HHHHHHhhCCCcCcceEEE------eecccCCCccc
Confidence 9999875321223322222 4455554442 2333 67777788765
No 149
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.75 E-value=5.2e-17 Score=132.88 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE-EEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ-RTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~-~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.++|+++|.+|+|||||++++..... +... .+|....+. .+.+ ++ ..+.||||||-.. +..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-PKEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CcCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 38999999999999999999987653 2211 122222111 2233 33 3788999999432 444
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPL 170 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~ 170 (311)
....+++++|++|+|+|++++-+-... .++..+..... ..|+++|.||.|+.... ......... ......
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQG 142 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHH
Confidence 455568899999999999855443332 24444544332 35999999999975431 111111110 001123
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+. .++. +||.++.|+++++..+.+.+
T Consensus 143 ~~~a~~~~~~~~~e------~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 143 GALAKQIHAVKYLE------CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHHcCCcEEEE------eCCCCCCCHHHHHHHHHHHH
Confidence 344444442 4444 78889999999999998765
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.75 E-value=2.3e-17 Score=130.72 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|+|.|..... ..|..+ .+ ... .+|||||++... ......+ ...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v-----~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV-----EF-NDK--GDIDTPGEYFSH---PRWYHAL----ITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccceEE-----EE-CCC--CcccCCccccCC---HHHHHHH----HHH
Confidence 79999999999999999999865311 112221 22 222 279999986532 1122222 233
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC--
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-- 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (311)
+.++|++++|+|++...+..... +.... ...|+++++||+|+... .... +..++...+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~~----~~~~~---~~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPAG----LLDIG---VSKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCHH----HHhcc---CCCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence 67889999999998443332222 22211 13589999999997533 1111 2333333342
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+++. +|+.++.|+++|++.+.+.+.
T Consensus 123 p~~~------~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 123 PIFE------LNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred CEEE------EECCCccCHHHHHHHHHHhch
Confidence 5555 788999999999999988764
No 151
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=5e-17 Score=153.20 Aligned_cols=161 Identities=21% Similarity=0.286 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc--ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA--FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~--~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|++|+|||||+|+|+|... ++. ....+.|..+.+..+.+ ++..+.+|||||+. .+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHH
Confidence 3799999999999999999998542 111 12357788887777777 67899999999943 244444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+.++|++++|+|++++........+..+.. .+. .++++|+||+|+.+. ..+...... +..++...+
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~ 136 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYI 136 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhC
Confidence 555778999999999987666666666665543 332 249999999998765 433332222 444444332
Q ss_pred ----CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 ----NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ----~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.++++ +|+.++.|+.++...|..++..
T Consensus 137 ~~~~~~ii~------vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FLKNAKIFK------TSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCcEEE------EeCCCCCCchhHHHHHHHHHHh
Confidence 33444 7888999999999998887654
No 152
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.75 E-value=8.2e-17 Score=130.40 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+..++|+++|.+|+|||||++++.+... +... .+|....+ ..+.+ ++ ..+.||||+|-. .+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f-~~~~---~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e-----------~~ 66 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCF-PENY---VPTVFENYTASFEI-DTQRIELSLWDTSGSP-----------YY 66 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCC-CCcc---CCceeeeeEEEEEE-CCEEEEEEEEECCCch-----------hh
Confidence 4568999999999999999999987654 2211 11222111 22333 33 378999999943 23
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCc
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPK 168 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~ 168 (311)
......+++++|++|+|+|++++-+-.. ..++..+.+..+ ..|+++|.||+|+.... ..+.+.... -...
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~ 142 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYD 142 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHH
Confidence 4444556889999999999986544443 356666766543 25999999999975321 111100000 0112
Q ss_pred hHHHHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 169 PLKEILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 169 ~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
....+....+. .++. +||+++.+ +++++..+...
T Consensus 143 ~~~~~a~~~~~~~~~E------~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 143 QGANMAKQIGAATYIE------CSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHHcCCCEEEE------CCcCCCCCCHHHHHHHHHHH
Confidence 24556666664 5554 79999998 99999887663
No 153
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=8e-17 Score=128.24 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++.... ... .+.+.......... ++ ..+.+|||||..+ +....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~-----------~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEDVQLNILDTAGQED-----------YAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-ccc--CCcchhhEEEEEEE-CCEEEEEEEEECCChhh-----------hhHHH
Confidence 48999999999999999999976542 111 11111111122223 33 4789999999543 22333
Q ss_pred HhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...+..+|++++|+|++++-+.. -..++..+..... ....|+++|+||+|........... ...+...+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 34567889999999987432211 1233344444321 2346999999999987521011111 22333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.+++. +|+.++.|+.+++..+.+.+
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 GVPYVE------TSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCeEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 555554 78899999999999987655
No 154
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.2e-16 Score=133.66 Aligned_cols=169 Identities=15% Similarity=0.034 Sum_probs=106.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+.....+|+++|.+|+|||||++++++... +.... +|....+ ..+.. ++ ..+.||||||-..
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~---pTi~~~~~~~i~~-~~~~v~l~iwDTaG~e~---------- 73 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV---PTVFENYTAGLET-EEQRVELSLWDTSGSPY---------- 73 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC---CceeeeeEEEEEE-CCEEEEEEEEeCCCchh----------
Confidence 445668999999999999999999987754 22111 1221111 12333 33 4789999999432
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh----hcC
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----REC 166 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~----~~~ 166 (311)
+......++.++|++|+|+|++++-+-.. ..|+..+....+ ..|+++|.||+|+.... ..+.+... ...
T Consensus 74 -~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs 148 (232)
T cd04174 74 -YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDL-STLMELSNQKQAPIS 148 (232)
T ss_pred -hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccccc-chhhhhccccCCcCC
Confidence 33444556889999999999985554433 356666666543 25899999999975321 11110000 001
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHH-HHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTE-QVGKLLSLVNSVIV 210 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~ 210 (311)
......+....+. .++. +||.++. ++++++..+.....
T Consensus 149 ~~e~~~~a~~~~~~~~~E------tSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 149 YEQGCALAKQLGAEVYLE------CSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHHHHHHHHcCCCEEEE------ccCCcCCcCHHHHHHHHHHHHH
Confidence 1124556666665 3544 7888887 79999998876653
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.75 E-value=4.4e-17 Score=152.94 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|++|+|||||+++|.+.... .....+.|.....+.+.+.++..++||||||+.++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~--~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA--QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc--cccCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 4589999999999999999999987652 22345677777777777733348999999997653 2233
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++++|+|+++.........+..+.. . ..|+++++||+|+.......+...+.. ..-....++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~----~vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-A----NVPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 345678899999999987666666666554433 2 248999999999764321223222221 111112222
Q ss_pred C--cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 N--RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~--~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
. ++++ +||.++.|+++|+++|..
T Consensus 223 ~~~~~v~------iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIFVP------VSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceEEE------EECCCCCChHHHHHhhhh
Confidence 2 2333 789999999999998864
No 156
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.75 E-value=2.4e-17 Score=158.32 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+++|.+..+ ......+.|.....+.+.+ ++..++||||||+.++ ....
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v--~~~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F-----------~~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV--AAGEAGGITQHIGAYQVET-NGGKITFLDTPGHEAF-----------TAMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--cccccCceeeeccEEEEEE-CCEEEEEEECCCCccc-----------hhHH
Confidence 458999999999999999999988665 2223456777777788888 7889999999998764 2222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++|+|+|++++........+..+.. . ..|+|+++||+|+.......+...+.. ...+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~----~vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-A----GVPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-c----CCcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 334567899999999987776666666655443 2 248999999999854311122211111 011122223
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++++ +||.++.|+.+|+++|..
T Consensus 425 ~~vp~vp------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIFVP------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceEEE------EeCCCCCCchHHHHhhhh
Confidence 23333 788999999999999874
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.75 E-value=2.9e-17 Score=131.16 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++... ... ..+++.......+.+ ++. .+.+|||||...... . ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~-~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~----~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGE-YDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------E----QLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccc-cCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------c----hHH
Confidence 589999999999999999987543 111 111111111222333 443 578999999763100 0 111
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|++|+|+|++++-+-.. ..++..+..........|+++|.||+|+... ..+... ....+....+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence 23556899999999985433332 3445555554321234699999999997543 211110 1223334445
Q ss_pred CcEEEecCCchhhhhhH-HHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRT-EQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~-~~i~~l~~~i~~~~ 209 (311)
..++. +|+.++ .|+.+++..+.+.+
T Consensus 138 ~~~~e------~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFE------VSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence 55544 677777 58999999987654
No 158
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.74 E-value=7.8e-17 Score=122.07 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=119.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+++|+++|..|+||||+++.+.|.+. ....+|...+.....+ ++..+.+||..| +..++.+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGG-----------q~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGG-----------QKTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCC-----------cchhHHHH
Confidence 469999999999999999999999874 3445677888888888 899999999999 45588899
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+|+...|++|||+|.+++..-.+ ....++++.... +..|++++.||.|.... ..+.+... ..+..+.+
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~------~~L~~l~k 149 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKA------LDLEELAK 149 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHh------hCHHHhcc
Confidence 999999999999999986655444 223333333221 33599999999997644 11233222 22677777
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..+.+. +++.++.++.+-++++..-+
T Consensus 150 s~~~~l~~------cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 150 SHHWRLVK------CSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred ccCceEEE------EeccccccHHHHHHHHHHHH
Confidence 77777766 67778888888888877654
No 159
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.74 E-value=6e-17 Score=153.14 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+++|++++|||||+++|+|.+.-.. .....+.|....+..+...++..+.||||||+.+ +......
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 689999999999999999998542111 1122477887776666554567899999999532 3333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC--
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-- 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (311)
.+.++|++++|+|+++++.+.+.+.+..+.. .+. .++++|+||+|+.+. ..+...... +..++...+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4678899999999997788888777776654 332 247899999998754 444443333 455554433
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.++++ +|+.++.|++.|++.|..+...
T Consensus 140 ~~~ii~------VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 EAKLFV------TAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCcEEE------EeCCCCCCCHHHHHHHHHhhcc
Confidence 33444 7888999999999999887643
No 160
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.74 E-value=6.7e-17 Score=130.24 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+.++++... +....+ +........+.. ++ ..+.||||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP--TVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC--cceeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhhh
Confidence 6899999999999999999987653 221111 111111112333 33 4788999999543 22333
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE 172 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~~~ 172 (311)
..++.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.... ...+..... ........
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence 445788999999999985444333 235555555432 35999999999975431 111111110 01112334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+....+. .++. +||.++.|++++++.+.+
T Consensus 143 ~~~~~~~~~~~e------~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGAVKYLE------CSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCCcEEEE------ecccccCCHHHHHHHHHH
Confidence 4444443 4443 789999999999988764
No 161
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.74 E-value=4e-17 Score=131.52 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=98.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
|+|+|.+|+|||||++++++... +....+ . ........+.. ++. .+.+|||||.... ......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~-~-~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVP-T-VFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCC-c-EEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhchh
Confidence 58999999999999999998764 221111 1 11111223333 343 6899999995532 222334
Q ss_pred ccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCchHHHHH
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKEIL 174 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (311)
++.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.... .....+... ........+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 5778999999999985433322 235555555432 36999999999986531 112111110 0011123455
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+. .++. +|+.++.|++++++.+.+.+
T Consensus 142 ~~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKYLE------CSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEEEE------ecCCCCCCHHHHHHHHHHHh
Confidence 55453 4444 78899999999999887643
No 162
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.8e-17 Score=127.44 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=121.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+.+..++|+++|.+|+|||+++-.+..... ..........+.....+.+ ++. .+.+|||.| +++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f--~~~~~sTiGIDFk~kti~l-~g~~i~lQiWDtaG-----------Qer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF--NTSFISTIGIDFKIKTIEL-DGKKIKLQIWDTAG-----------QER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC--cCCccceEEEEEEEEEEEe-CCeEEEEEEEEccc-----------chh
Confidence 445669999999999999999998886654 2122223445555566666 554 789999999 466
Q ss_pred HHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+......++++++++++|+|+++. -..+...|++.+.++...+ .|.++|.||+|+... ..+.. ..-..
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~--R~V~~-------e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEK--RQVSK-------ERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccc--ccccH-------HHHHH
Confidence 777777889999999999999843 3334467899999877654 489999999997764 33321 12356
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....|..++. +||+++.++.+.+-.+...+.
T Consensus 143 lA~e~G~~F~E------tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIKFFE------TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence 67777888887 899999999999888776554
No 163
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.74 E-value=8.3e-17 Score=132.50 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++++.... ... ..++.......+.+ .+ ..+.||||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKY--RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccC--CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 5899999999999999999987642 111 11111222233444 44 47889999996542 22233
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH-hc
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 177 (311)
.++..+|++|||+|++++.+-.. ..++..+.+.... ...|+++|+||+|..... ..+... . ...... .+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhhc
Confidence 45778999999999985433332 2333444443322 346999999999986531 111110 0 111111 22
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. +|+.++.|+.++++++.+.+.
T Consensus 137 ~~~~~~------~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVE------TSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEE------ecCCCCCCHHHHHHHHHHHhh
Confidence 334443 788999999999999987664
No 164
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.5e-17 Score=128.47 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=110.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+-++....+-....+..|. ......+.. ++ ..+.||||.|. +++.+.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGa--aF~tktv~~-~~~~ikfeIWDTAGQ-----------ERy~sl 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGA--AFLTKTVTV-DDNTIKFEIWDTAGQ-----------ERYHSL 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccccccccccc--EEEEEEEEe-CCcEEEEEEEEcCCc-----------cccccc
Confidence 489999999999999999888765542111222221 122222233 33 36779999993 446667
Q ss_pred HHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++++++|+|+|+++.-+-. .+.|++.|++..+++. .+.+|.||+|+... ..+. -.....+.+.
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~--R~V~-------~~ea~~yAe~ 139 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLER--REVE-------FEEAQAYAES 139 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhc--cccc-------HHHHHHHHHh
Confidence 778899999999999999443322 3677777777666432 46679999998864 2221 1113455555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
.|..++. +||+++.|+++++..|.+.++..
T Consensus 140 ~gll~~E------TSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 140 QGLLFFE------TSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred cCCEEEE------EecccccCHHHHHHHHHHhccCc
Confidence 5666665 89999999999999999887653
No 165
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=1.1e-16 Score=129.24 Aligned_cols=162 Identities=15% Similarity=0.036 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|.+|+|||||++++.+... +.... +|.... ...+.+ ++ ..+.||||||... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~---~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYV---PTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcC---CceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 6899999999999999999998753 22211 122111 123333 33 3788999999432 3333
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh----hcCCchHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKPLK 171 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~----~~~~~~~~ 171 (311)
...+++++|++|+|+|++++-+-.. ..++..+.+..+ ..|+++|.||+|+.... ..+.+.-. .-......
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3456889999999999985554443 356666766553 25899999999975321 11110000 00111234
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
.+....+. .++. +||.++.+ +++++..+...
T Consensus 142 ~~a~~~~~~~~~E------~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYLE------CSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEEE------CccCcCCcCHHHHHHHHHHH
Confidence 55555554 3444 78888885 99999887763
No 166
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.74 E-value=8.8e-17 Score=134.44 Aligned_cols=160 Identities=18% Similarity=0.080 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.+|+|||||++++++.........+.+. .......+.+. ....+.+|||||... .+...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM----------WTEDS-- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch----------HHHhH--
Confidence 47999999999999999999765542111111111 11222223331 335789999999651 01111
Q ss_pred hccC-CccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKD-GIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~-~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+... ....+....
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~--~~v~~~-------~~~~~a~~~ 136 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS--REVSVQ-------EGRACAVVF 136 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc--ceecHH-------HHHHHHHHc
Confidence 233 7899999999985433222 344555554321 134699999999998654 222111 012233334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..++. +||.++.|++++++.+...+.
T Consensus 137 ~~~~~e------~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIE------TSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555554 788899999999999987774
No 167
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=1e-16 Score=127.07 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|++|+|||||+|++++... .... .+.+.......+.. .+ ..+.+|||||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998763 2222 22222333333333 32 4788999999543 222333
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+..+|++++|+|.+++-+..+ ..++..+....+. ...|+++++||+|.........+ ....+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE---------EGKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH---------HHHHHHHHcC
Confidence 44667899999999984332222 3444445544431 23699999999998753111111 1233334444
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+++. .|+.++.|+.++++.|.+
T Consensus 136 ~~~~~------~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPFIE------TSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CcEEE------eccCCCCCHHHHHHHHHh
Confidence 44444 678888999999998865
No 168
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.74 E-value=2.2e-17 Score=128.48 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|++++... . ...|.. +.+ .. .+|||||.... .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~----~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--L----YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--c----ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 799999999999999999998763 1 112221 222 22 58999996321 11112222234
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-c
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-R 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (311)
++++|++++|+|++++.+..+..++. ..+ .|+++|+||+|+.+.. ...+. ...++...+. +
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~~---------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIER---------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHHH---------HHHHHHHcCCCc
Confidence 78899999999998665544433322 222 3899999999976431 11111 2233333343 3
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
++. +|+.++.|++++++++.
T Consensus 122 ~~~------~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFE------ISSVDEQGLEALVDYLN 141 (142)
T ss_pred EEE------EecCCCCCHHHHHHHHh
Confidence 444 68888999999998863
No 169
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.74 E-value=9.4e-17 Score=128.67 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++...... ..+ ++...-...+.+ ++ ..+.+|||||.... ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-YDP--TIEDSYRKQVEI-DGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-cCC--cchheEEEEEEE-CCEEEEEEEEeCCCcccc-----------hhhh
Confidence 6899999999999999999997764221 111 111111222333 33 47789999996642 2233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..++++++|+|++++-+-.. ..+...+...... ...|++++.||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 344667899999999984322222 3344444443322 346999999999976441111111 12233333
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+ .+++. +||.++.|+.+++.++...
T Consensus 137 ~~~~~~~------~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFYE------TSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEEE------eeCCCCCCHHHHHHHHHHH
Confidence 4 34444 7888899999999998753
No 170
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.74 E-value=1.6e-16 Score=133.65 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||+|+|+|... .....+++|.......+.+ .+..+.+|||||+.+....... +...+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~----~~~~~l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKG----RGRQVIAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchh----HHHHHHHh
Confidence 689999999999999999999764 2234456676666666667 8889999999998753321111 22222334
Q ss_pred cCCccEEEEEEECCC
Q 021534 102 KDGIHAVLLVFSIRN 116 (311)
Q Consensus 102 ~~~~d~il~v~d~~~ 116 (311)
++.+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 778899999999873
No 171
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=2.6e-17 Score=130.03 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=92.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
|+++|++|||||||+|+|.+..... .. .+|.......+.. ++..+.+|||||... +...+..++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DT--IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--Cc--cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 7999999999999999999986421 11 2233333344444 567899999999542 333444557
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
..+|++++|+|++...+... ...+..+..... ....|+++|+||+|.... ........... +... .....++
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~---~~~~-~~~~~~~ 138 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQMN---LKSI-TDREVSC 138 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHHhC---cccc-cCCceEE
Confidence 78899999999983221111 122222221110 123599999999997654 33322221100 0000 0001122
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+ ..|+.++.|+.+++++|.+
T Consensus 139 ~------~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 139 Y------SISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred E------EEEeccCCChHHHHHHHhh
Confidence 3 2678888999999998864
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.73 E-value=1.4e-16 Score=129.18 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++++... +... .+.+.......+.+ .+ ..+.+|||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESY--YPTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cccc--CcchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 6899999999999999999998764 1111 11121111222333 33 3578999999653 22233
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++..+|++++|+|++++-+... ..++..+.+..+. ...|+++|.||+|+... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence 344667899999999984332222 2333344433322 23589999999997643 211110 122333444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
+.+++. +|+.++.|+.+++.++.+.+...
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 137 GAAFLE------SSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 444444 67888899999999998776543
No 173
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=1.6e-16 Score=125.30 Aligned_cols=162 Identities=23% Similarity=0.217 Sum_probs=100.9
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDG 104 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (311)
++|++|+|||||+|+|++...... ....+.|.........+..+..+.+|||||+.+........ ...+...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV-SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc-CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHh
Confidence 589999999999999999875322 23345565665555555237799999999998764433211 1122233567
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|+++||+|++.........+...... ...|+++|+||+|.... ..+...... ...........+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence 899999999985555444432222221 23589999999998866 444332210 001111112334444
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.|+.++.|+.++++++.+.
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 5667778999999988754
No 174
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=1.2e-16 Score=128.17 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|+|||||++++++....+.. ..+..........+.+ ++ ..+.+|||+|-... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~-----------~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVA-----------IL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEEEE-CCeEEEEEEEecCCcccc-----------cc
Confidence 4589999999999999999999987742011 1122222222333444 44 46889999995542 12
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....++..+|++|+|+|++++-+-. .+..++.... .....|+++|+||+|+... .... .. ....+...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~-~~~~~p~iiv~NK~Dl~~~--~~~~--~~-----~~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKSFS--YCAEVYKKYF-MLGEIPCLFVAAKADLDEQ--QQRY--EV-----QPDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhc-cCCCCeEEEEEEccccccc--cccc--cc-----CHHHHHHH
Confidence 2233467899999999997442211 1222333221 1123699999999997543 1110 00 12233333
Q ss_pred cCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+. .++. +||.++.|++++++.+.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLPPPLH------FSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCCCCEE------EEeccCccHHHHHHHHHHHh
Confidence 333 2233 68888899999999988765
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.73 E-value=8.1e-17 Score=153.34 Aligned_cols=163 Identities=16% Similarity=0.220 Sum_probs=108.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...++|+|+|++|+|||||+++|++.... .....+.|.....+.+.+. .+..++||||||+.+ +
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~--~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA--QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc--cccCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence 35689999999999999999999987652 2223455655555555442 247899999999543 4
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...+...+..+|++|+|+|++++........+..+.. ...|+++++||+|........+...+.. ...+.
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~ 378 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANANTERIKQQLAK-----YNLIP 378 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCccccCHHHHHHHHHH-----hccch
Confidence 4444455677899999999987776666666665543 2359999999999764321222222211 00011
Q ss_pred HhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++ .++++ +||.++.|+.+|++.|..+.
T Consensus 379 e~~g~~vpvv~------VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 379 EKWGGDTPMIP------ISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HhhCCCceEEE------EECCCCCCHHHHHHhhhhhh
Confidence 2223 23333 78899999999999987653
No 176
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.73 E-value=2.6e-17 Score=132.62 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=106.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|..||||||+++.|....... ..+|.......+.+ .+..+.+||.+|-. .+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccc-----------ccccc
Confidence 567999999999999999999998765321 33456666777777 88999999999932 25556
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~~ 174 (311)
+..++.++|++|||+|+++.-.-. +....|..++... ...|+++++||.|.... ....+...+.. ..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~--e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQ--EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHH--HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred ceeeccccceeEEEEecccceeec--ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence 777889999999999998332211 1222333333321 23699999999997654 11223332221 1111
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...++..+ .+|+.++.|+.+.++||.+.
T Consensus 147 --~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 --NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp --SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred --cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12334332 36778889999999999764
No 177
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.73 E-value=1.5e-16 Score=128.12 Aligned_cols=164 Identities=17% Similarity=0.095 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++|+++|.+|+|||||+.+++.... ..... .|.... ...+.. ++ ..+.||||+|... +...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~---~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~-----------~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYI---PTVFDNFSANVSV-DGNTVNLGLWDTAGQED-----------YNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCC---CcceeeeEEEEEE-CCEEEEEEEEECCCCcc-----------cccc
Confidence 5899999999999999999997664 22221 122111 122333 33 4789999999654 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH-hhhcCCchHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY-LGRECPKPLKEIL 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (311)
...+++++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|+.+......... ...-.......+.
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 3445789999999999986655444 346666665443 359999999999854310000000 0000011234444
Q ss_pred HhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+.. ++. +||.++.++++++..+.+.+
T Consensus 143 ~~~~~~~~~E------~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYIE------CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEEE------CCCCcccCHHHHHHHHHHHH
Confidence 554542 443 78899999999999988765
No 178
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=2.1e-16 Score=143.71 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=96.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|++++|||||+|+|++...... .....+.|.......+.+ ++..+.++||||+.
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH
Confidence 355679999999999999999999997532110 011256677766666666 77889999999954
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
+ +...+...+..+|++++|+|+...+...+...+..+.. .+ .| +|+++||+|+... ....+
T Consensus 87 ~-----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g----~~~iIvvvNK~D~~~~--~~~~~ 148 (409)
T CHL00071 87 D-----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VG----VPNIVVFLNKEDQVDD--EELLE 148 (409)
T ss_pred H-----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC----CCEEEEEEEccCCCCH--HHHHH
Confidence 2 33333344567899999999987788888777776654 33 35 7889999998754 33333
Q ss_pred HhhhcCCchHHHHHHhcC
Q 021534 161 YLGRECPKPLKEILQLCD 178 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (311)
.+.. .+..++..++
T Consensus 149 ~~~~----~l~~~l~~~~ 162 (409)
T CHL00071 149 LVEL----EVRELLSKYD 162 (409)
T ss_pred HHHH----HHHHHHHHhC
Confidence 3221 2556666544
No 179
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.72 E-value=1.7e-16 Score=127.97 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+++|++|||||||++++.+.... ....+ |.... ...+.+ ++. .+.+|||||..+ +...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVP---TVFENYVADIEV-DGKQVELALWDTAGQED-----------YDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCC---ccccceEEEEEE-CCEEEEEEEEeCCCchh-----------hhhc
Confidence 68999999999999999999986542 11111 11111 223333 333 688999999643 2222
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL 170 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~ 170 (311)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|.||+|+... ......+.... ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 2335678999999999984422222 234444544322 3599999999997644 22211111100 0112
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+....+. .++. +||.++.|+++++.+|.+.
T Consensus 141 ~~~~~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGYME------CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEEEE------eccccCcCHHHHHHHHHHH
Confidence 233333332 3333 7889999999999998754
No 180
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.72 E-value=1.7e-16 Score=127.85 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|++|+|||||++++++.... ....+ .........+.+ ++. .+.+|||||..+.. ...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVP--TVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCC--ceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------ccc
Confidence 48999999999999999999987642 11111 111111223333 443 57799999965532 122
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC-----CchHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPLK 171 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~~~ 171 (311)
..++..+|++++|+|++++-+..+ ..++..+... . ...|+++|+||+|+.+. ......+.... .....
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~--~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-A--PNVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-C--CCCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence 334778999999999985433322 2345555543 2 33699999999997644 21111111000 01123
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+....+. .++. +||.++.|++++++.+...
T Consensus 141 ~~~~~~~~~~~~e------~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYVE------CSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEEE------ecCCcCCCHHHHHHHHHHH
Confidence 33344443 3333 7889999999999987654
No 181
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.72 E-value=1.6e-16 Score=130.42 Aligned_cols=151 Identities=14% Similarity=0.016 Sum_probs=97.5
Q ss_pred EcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE--EEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM--QRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~--~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+|.+|||||||++++++... .... ..|..... ..+.+. ....+.||||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKY---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCC---CCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 69999999999999986553 2211 22332222 223331 234899999999433 444455568
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.++|++|+|+|++++.+... ..++..+.+.+. ..|+++|.||+|+... ....+. ..+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~~--~v~~~~---------~~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKDR--KVKAKS---------ITFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cCCHHH---------HHHHHHcCCEE
Confidence 89999999999985544433 345666666542 3599999999997532 111111 12233334444
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+. +||.++.|+.+++.+|...+..
T Consensus 132 ~e------~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 YD------ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44 7889999999999999876643
No 182
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.71 E-value=2.1e-16 Score=133.87 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++++... +... .+++.......+.+ ++ ..+.||||||..+ +....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~~y--~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~-----------~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EEQY--TPTIEDFHRKLYSI-RGEVYQLDILDTSGNHP-----------FPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CCCC--CCChhHhEEEEEEE-CCEEEEEEEEECCCChh-----------hhHHH
Confidence 4799999999999999999987654 2211 11111222223334 44 4788999999654 22222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHh-------CCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLF-------GKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
..++..+|++|+|+|++++-+-.. ..++..+.... ......|+++|+||+|+........++ +
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i 136 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------V 136 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------H
Confidence 334668899999999985433222 23444444321 112346999999999986431111111 2
Q ss_pred HHHHHh-cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQL-CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~-~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++.. .+..++. +||.++.|++++++.|..+.
T Consensus 137 ~~~~~~~~~~~~~e------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 137 EQLVGGDENCAYFE------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHhcCCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 333322 1233444 78889999999999998865
No 183
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.71 E-value=2e-16 Score=127.41 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||++++++... .... .+++.......+.. ++ ..+.+|||||... +....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEY--VPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDE-----------FDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCC--CCceeeeeeEEEEE-CCEEEEEEEEECCCChh-----------hcccc
Confidence 4799999999999999999987653 2222 12222222223333 33 3778999999643 22223
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----CCchHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLKE 172 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~~~~ 172 (311)
..++.++|++|+|+|++++-+-.. ..++..+..... ..|+++|.||+|+.... ..+....... .......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 445788999999999985543332 345555554322 35999999999986431 1111110000 0011233
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+....+. .++. +||.++.|++++++.+.
T Consensus 142 ~a~~~~~~~~~e------~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYIE------CSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEEE------EeCCCCCCHHHHHHHHH
Confidence 4444444 4444 78899999999998763
No 184
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.4e-16 Score=141.05 Aligned_cols=165 Identities=19% Similarity=0.234 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc------cc------c--ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKK------AF------M--SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~------~~------~--~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|++++|||||+++|++.. .+ . ......+.|..+....+.+ ++..+.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~- 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA- 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH-
Confidence 3566999999999999999999999621 00 0 0011356777776666666 67789999999953
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 161 (311)
.+..........+|++++|+|+.......+...+..+.. .+ .| +++++||+|+... ....+.
T Consensus 87 ----------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred ----------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEEEecCCcch--HHHHHH
Confidence 233334445668899999999986677777666666553 33 35 4568999998753 332222
Q ss_pred hhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH----------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT----------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~----------~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++..++. ++++ .|+.++ .++..|++.|...++
T Consensus 150 ~~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 24555555432 2232 444443 357888888887653
No 185
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.71 E-value=5.4e-16 Score=129.04 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+|+|+|.+|+|||||++++++... +....+ |....+ ..+.+ ++ ..+.||||+|-.. +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p---Ti~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVP---TVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCC---ccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 6899999999999999999998663 222211 211111 12333 33 3788999999432 3334
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----CCchHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLK 171 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~~~ 171 (311)
...+++++|++|+|+|++++-+-.. ..+...+...+. ..|+++|.||+|+.... ..+....... ....-.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~---~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP---NAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 4456899999999999985533333 233334444332 35999999999976431 1111110000 011233
Q ss_pred HHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHHH
Q 021534 172 EILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSVI 209 (311)
Q Consensus 172 ~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~~ 209 (311)
.+....+. .|+. +||.++.+ +.+++.......
T Consensus 142 ~~ak~~~~~~y~E------~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 142 VLAKQVGAVSYVE------CSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHHHcCCCEEEE------cCCCcCCcCHHHHHHHHHHHH
Confidence 45555554 4554 68877664 999998776643
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.70 E-value=2.4e-16 Score=148.71 Aligned_cols=154 Identities=17% Similarity=0.212 Sum_probs=105.5
Q ss_pred cCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCcc
Q 021534 27 GRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIH 106 (311)
Q Consensus 27 G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d 106 (311)
|.+|+|||||+|+|+|... ...+.+++|.+.....+.+ ++..+.+|||||.++...... .+.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8999999999999999875 3445678888888777777 788899999999887543221 12222211 1235789
Q ss_pred EEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecC
Q 021534 107 AVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 186 (311)
Q Consensus 107 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 186 (311)
++++|+|++ .+... ......+.+ ...|+++|+||+|..+. ..+.. +...+....+.++++
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~~--~~i~~--------d~~~L~~~lg~pvv~--- 134 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE-----LGIPMILALNLVDEAEK--KGIRI--------DEEKLEERLGVPVVP--- 134 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh-----cCCCEEEEEehhHHHHh--CCChh--------hHHHHHHHcCCCEEE---
Confidence 999999998 44332 222222322 23599999999997644 22111 123444555666666
Q ss_pred CchhhhhhHHHHHHHHHHHHHHH
Q 021534 187 KTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 187 ~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+|+.++.|++++++.+.+..
T Consensus 135 ---tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 ---TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---EECCCCCCHHHHHHHHHHHh
Confidence 78889999999999998764
No 187
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.70 E-value=5e-16 Score=120.07 Aligned_cols=167 Identities=13% Similarity=0.129 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|.++|.+|+|||||+|.+........ .......+.....+.+ +++ .+.||||.| ++++.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~q--ykaTIgadFltKev~V-d~~~vtlQiWDTAG-----------QERFq 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQ--YKATIGADFLTKEVQV-DDRSVTLQIWDTAG-----------QERFQ 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHH--hccccchhheeeEEEE-cCeEEEEEEEeccc-----------HHHhh
Confidence 3459999999999999999999998765211 1111222222223333 333 788999999 56677
Q ss_pred HHHHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+.-..+++++|++++|+|++++ +...+.+--+++...-..+ ..-|+|++.||+|.-......+... ..+.
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~-------~Aq~ 145 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEK-------KAQT 145 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHH-------HHHH
Confidence 7667789999999999998743 3333433334444433332 2348999999999654321222211 1344
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++..-|. +|+. +||+...++.+.+..+....-.
T Consensus 146 WC~s~gnipyfE------tSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 146 WCKSKGNIPYFE------TSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HHHhcCCceeEE------ecccccccHHHHHHHHHHHHHh
Confidence 4444343 3333 7888889999999888765543
No 188
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.70 E-value=2.4e-16 Score=132.79 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+++|++....... ....+.|.......+.+ .+..+.+|||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 5899999999999999999864321110 01124455666677778 8899999999998763
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++++|+|++.+.......++..+.+ .+ .|+++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~-~~----~P~iivvNK~D~~~a 131 (237)
T cd04168 78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK-LN----IPTIIFVNKIDRAGA 131 (237)
T ss_pred ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccccCC
Confidence 2222334566799999999987777666666666654 22 489999999997644
No 189
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=8.8e-16 Score=139.00 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=110.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFM--------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|+.++|||||+++|++...-. ......+.|..+....+.. ++..+.+|||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 4567999999999999999999998732100 0001346777776666655 677899999999542
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 161 (311)
+..........+|++++|+|+.......+...+..+... | .| +++++||+|+.+. ..+.+.
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~--~~~~~~ 149 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD--EELLEL 149 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch--HHHHHH
Confidence 333333345678999999999877777777777776653 3 35 7889999998754 333332
Q ss_pred hhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH--------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT--------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~--------~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++...+. ++++ .|+.++ .++..|++.+.+.++
T Consensus 150 i~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 150 VEM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 221 25555555442 3444 455554 367888888887764
No 190
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2.3e-16 Score=135.22 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=85.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+|+|+....... .....+.|.......+.| .+..+.+|||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 589999999999999999974221000 011246788888888888 8999999999997652
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++|+|+|+.......+..++..+... ..|+++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a 131 (270)
T cd01886 78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGA 131 (270)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 22334456677999999999877777777777766542 2489999999997643
No 191
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=7.7e-16 Score=121.25 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+|++++.. ++.. ..++.|.......+.. ++ ..+.+|||||..+. ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDY-----------RAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccc-----------hHHH
Confidence 789999999999999999999987 3332 2345555555554555 56 67899999995542 1112
Q ss_pred HhccCCccEEEEEEECCCC-CChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNR-FSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
......++++++++|.... .+.. .......+...... ..|+++++||+|.... . .... ....+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence 2223455677777776522 1111 12333444443322 3599999999998754 2 1111 222233
Q ss_pred hcC-CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+ .++++ .|+..+.|+.+++++|.
T Consensus 135 ~~~~~~~~~------~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEPIIP------LSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCceEE------eecCCCCCHHHHHHHhh
Confidence 222 23333 67888899999998874
No 192
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.69 E-value=6.3e-16 Score=129.00 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCC-------------CCcce------------------------eEEEEEE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGS-------------SGVTK------------------------TCEMQRT 64 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-------------~~~T~------------------------~~~~~~~ 64 (311)
+|+++|+.++|||||+++++.... ..+... .|.|. ......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985322 110000 01111 0000122
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc--CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK--DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~--~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
.. .+..++++||||+.+ +.......+ ..+|++++|+|+.++++..+...+.++... + .|++
T Consensus 80 ~~-~~~~i~liDtpG~~~-----------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~i 142 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-----------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVF 142 (224)
T ss_pred ee-CCcEEEEEECCCcHH-----------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEE
Confidence 33 577899999999653 221112222 368999999999888888888888887753 2 4899
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe--------------------cCCchhhhhhHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF--------------------DNKTKDAAKRTEQVGKLL 202 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--------------------~~~~~~sa~~~~~i~~l~ 202 (311)
+|+||+|.... ..+...+.. +...+...+..-.++ .....+|+.++.|++.|.
T Consensus 143 vvvNK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 143 VVVTKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred EEEECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 99999998755 444444333 333333211110000 011236888999999999
Q ss_pred HHHHHH
Q 021534 203 SLVNSV 208 (311)
Q Consensus 203 ~~i~~~ 208 (311)
..|..+
T Consensus 216 ~~L~~l 221 (224)
T cd04165 216 AFLNLL 221 (224)
T ss_pred HHHHhc
Confidence 988654
No 193
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=7.3e-16 Score=140.85 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=107.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC------cc-cc---c----cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGK------KA-FM---S----KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~------~~-~~---~----~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|+.++|||||+++|++. .. +. . .....+.|.......+.. ++..+.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCcc
Confidence 3457799999999999999999999742 10 00 0 011257788887777776 77899999999986
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
+. ..... .....+|++++|+|+.......+...+..+... + .| +|+++||+|+++. ..+.+
T Consensus 136 ~f-------~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g----ip~iIvviNKiDlv~~--~~~~~ 197 (447)
T PLN03127 136 DY-------VKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G----VPSLVVFLNKVDVVDD--EELLE 197 (447)
T ss_pred ch-------HHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEeeccCCH--HHHHH
Confidence 41 11122 223458999999999877777787777776653 3 36 6789999998754 33333
Q ss_pred HhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhH-------HHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRT-------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~-------~~i~~l~~~i~~~~~ 210 (311)
.+.. .+..++..++. ++++.+. .++.++ .++..|++.+.+.++
T Consensus 198 ~i~~----~i~~~l~~~~~~~~~vpiip~Sa---~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEM----ELRELLSFYKFPGDEIPIIRGSA---LSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHH----HHHHHHHHhCCCCCcceEEEecc---ceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3321 24455544322 2322111 111122 246788888887664
No 194
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.3e-15 Score=120.60 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+.-++|+++|.+|+|||-|+.+++.... ...+......+.....+.+ +++ +..||||.| +++++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF--~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAG-----------QERyr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF--SLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAG-----------QERYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc--CcccccceeEEEEeeceee-cCcEEEEeeecccc-----------hhhhc
Confidence 4558999999999999999999998775 2233333334444444555 554 779999999 45677
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...+.+++++.+.++|.|++.+.+-.. ..||..|+.+..+ ..++++|.||+|+... ..+.. ..-+...
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~l--raV~t-------e~~k~~A 146 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNHL--RAVPT-------EDGKAFA 146 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhhc--cccch-------hhhHhHH
Confidence 777788999999999999985555443 5677777776544 3489999999997643 22111 1123333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+.-+-.++. +||+...+++..+..+...
T Consensus 147 e~~~l~f~E------tSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 147 EKEGLFFLE------TSALDATNVEKAFERVLTE 174 (222)
T ss_pred HhcCceEEE------ecccccccHHHHHHHHHHH
Confidence 443444443 6788888888877665543
No 195
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=1.6e-15 Score=114.42 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=102.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|.+|+|||||+-+++...+ ....+.....+.....+.+ ++. .+.||||+| +++++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f--d~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAG-----------qErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF--DDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAG-----------QERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc--CccCCceeeeeEEEEEEEE-cCceEEEEEEeccc-----------hHhhhc
Confidence 459999999999999999999886654 2222233344555555555 443 899999999 567888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.++|+|.|++.|-+-.. .-|++.+..++.. ...-.++|.||+|.-.. ..+.... =.....
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~--R~V~reE-------G~kfAr 145 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESE--RVVDREE-------GLKFAR 145 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhc--ccccHHH-------HHHHHH
Confidence 88899999999999999985533322 2445555554433 11236789999995432 2222111 122333
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++.-++. .||++..+++..++.+..
T Consensus 146 ~h~~LFiE------~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 146 KHRCLFIE------CSAKTRENVQCCFEELVE 171 (209)
T ss_pred hhCcEEEE------cchhhhccHHHHHHHHHH
Confidence 33333333 678888888777765554
No 196
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.4e-15 Score=137.77 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=85.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCC------cccc----c----cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGK------KAFM----S----KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~----~----~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+.++|+++|+.++|||||+++|++. ..+. . .....+.|.......+.. ++..+.||||||+.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~ 86 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA 86 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchH
Confidence 3567799999999999999999999853 1100 0 001256777776666655 67789999999965
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+ +..........+|++++|+|+..+....+...+..+... +. .++++++||+|+.+.
T Consensus 87 ~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 D-----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 3 222223334578999999999877777777777776543 32 245678999998754
No 197
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.68 E-value=4.2e-16 Score=130.23 Aligned_cols=151 Identities=18% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeCCceE
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKAGQVV 72 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~~~l 72 (311)
+|+++|++++|||||+.+|+...... ......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 58999999999999999996432100 0001246788888888888 89999
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
.+|||||+.+ +...+......+|++|+|+|+++. ........+.... ..+. +|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999643 222233345678999999999852 2233344444333 2331 4899999
Q ss_pred eccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 146 TGGDELED--NDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 146 nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
||+|+... ......+.+.. +...+...+. ++++ +||.++.|+.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence 99998732 11333443333 4445555432 2444 6777776655
No 198
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=7.3e-16 Score=142.11 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc------------CC-------------------CCCcceeEEEEEEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK------------AG-------------------SSGVTKTCEMQRTM 65 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~------------~~-------------------~~~~T~~~~~~~~~ 65 (311)
..+.++|+++|++++|||||+++|+........ .+ ..+.|..+....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 567799999999999999999999865432111 00 13567777777777
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
+ ++..+.||||||+.+ +..........+|++++|+|+..++...+...+..+.. .+. +|+++++
T Consensus 104 ~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvvv 167 (474)
T PRK05124 104 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVAV 167 (474)
T ss_pred c-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEEE
Confidence 7 788999999999543 22222223577899999999986666655544444333 332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcC----CcEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD----NRCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|........+.+.... +..++...+ ..+++ +|+.++.|+..
T Consensus 168 NKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~iip------vSA~~g~ni~~ 215 (474)
T PRK05124 168 NKMDLVDYSEEVFERIRED-----YLTFAEQLPGNLDIRFVP------LSALEGDNVVS 215 (474)
T ss_pred EeeccccchhHHHHHHHHH-----HHHHHHhcCCCCCceEEE------EEeecCCCccc
Confidence 9999874322333333332 444444333 33444 56666666654
No 199
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.68 E-value=9.1e-16 Score=122.05 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
+|+++|.+|+|||||++++.+... +.... +..........+.. ++. .+.||||||... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~-~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYI-PTIGIDSYSKEVSI-DGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSE-TTSSEEEEEEEEEE-TTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccc-cccccccccccccc-ccccccccccccccccc-----------cccccc
Confidence 689999999999999999998764 22111 11112333334444 343 799999999543 122223
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..+.++|++|+|+|.+++-+-.. ..++..+....+. ..|++++.||.|+... ..+.. .....+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~~--~~v~~-------~~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSDE--REVSV-------EEAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGGG--SSSCH-------HHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccc--cccceeeecccccccc--ccchh-------hHHHHHHHHhC
Confidence 34778899999999985433332 4667777776652 2499999999997753 22111 11355666667
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..++. +|+.++.++.+++..+.+.+
T Consensus 136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFE------VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 66665 67788899999988876543
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=8.7e-16 Score=140.73 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------c---------------CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--------------K---------------AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~---------------~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|++++|||||+++|+....... + ....+.|.+.....+.+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 4569999999999999999999985321100 0 01247788888888877 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---CChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---FSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
+..+.||||||..+ +.......+..+|++++|+|++++ ........+..+ ...+. .|+++++
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 88999999999532 333333345778999999999855 333333333333 33332 4799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+.....+ +..++...+. ++++ +||.++.|+.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~~~~i~------iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDTVPFIP------ISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------eeccccccccc
Confidence 9999874322333333332 5556655442 2333 67777777765
No 201
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.68 E-value=1.2e-15 Score=143.58 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSK-------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
.+|+++|+.++|||||+++|+.... +... ....+.|.......+.| .+..++||||||+.|+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 5899999999999999999986421 1111 01246788888888888 8999999999997653
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
...+..++..+|++++|+|+.+........++..+.. .+ .|+++++||+|..... ..+.+.+
T Consensus 78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~-~~----ip~IVviNKiD~~~a~---~~~v~~e-- 139 (594)
T TIGR01394 78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE-LG----LKPIVVINKIDRPSAR---PDEVVDE-- 139 (594)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH-CC----CCEEEEEECCCCCCcC---HHHHHHH--
Confidence 2233344567899999999986666677777776655 22 4899999999975431 1111121
Q ss_pred CchHHHHHHhc-------CCcEEEecCCchhhhhhHH----------HHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLC-------DNRCVLFDNKTKDAAKRTE----------QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~----------~i~~l~~~i~~~~~~ 211 (311)
+..++..+ ..++++ .|+.++. ++..|++.|.+.++.
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVY------ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---HHHHHHhhccccccccCcEEe------chhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 23333221 122333 5665553 789999999888764
No 202
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.67 E-value=1.1e-15 Score=130.78 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------------CCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.+|+++|++|+|||||+++|+.........+ ..+.+.......+.+ .+..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 6899999999999999999985432111000 023455556667778 8899999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ......++..+|++|+|+|++.++......++..... . ..|+++++||+|....
T Consensus 82 ~df-----------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~----~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-----------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-R----GIPIITFINKLDREGR 138 (267)
T ss_pred hHH-----------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-c----CCCEEEEEECCccCCC
Confidence 652 1112233456799999999986666555555554433 2 2589999999997644
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=8.6e-16 Score=139.60 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc-CCCCCcceeEEEEEEEe-------------------------eCCceE
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK-AGSSGVTKTCEMQRTML-------------------------KAGQVV 72 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-~~~~~~T~~~~~~~~~~-------------------------~~~~~l 72 (311)
+.++|+++|++++|||||+++|++....... ....+.|....+..+.+ ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 5689999999999999999999875321000 00123333332211110 014679
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 73 NVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
++|||||..+ +...+......+|++++|+|++++. .......+..+.. .+. +|+++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 9999999543 3333333445679999999998655 4555555555433 332 4799999999987
Q ss_pred CCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 152 EDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.. ....+.... +..++... +..+++ .|+.++.|++.|+++|...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENAPIIP------VSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCCeEEE------EECCCCCChHHHHHHHHHhCC
Confidence 54 322222221 23333221 223333 788889999999999998654
No 204
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.6e-15 Score=114.50 Aligned_cols=160 Identities=15% Similarity=0.108 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+++.++|.+|+|||+|+-.++.....+....+ ...+.....+.+ +++ ++.||||.|. +.+++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~T--iGvefg~r~~~i-d~k~IKlqiwDtaGq-----------e~frs 70 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT--IGVEFGARMVTI-DGKQIKLQIWDTAGQ-----------ESFRS 70 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccce--eeeeeceeEEEE-cCceEEEEEEecCCc-----------HHHHH
Confidence 3489999999999999999999988753333322 223333344444 444 8899999994 44777
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.++|+|+|++.+-+-.. ..+|.-++.+..+ .--++++.||+|+... ..+.... -....+
T Consensus 71 v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~~r--R~Vs~EE-------GeaFA~ 139 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLEAR--REVSKEE-------GEAFAR 139 (216)
T ss_pred HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhhcc--ccccHHH-------HHHHHH
Confidence 77888999999999999985544333 3555556655422 2358888999998755 3332221 123334
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..|-.+. .+||+++.++++.+.-+...+
T Consensus 140 ehgLifm------ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 140 EHGLIFM------ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred HcCceee------hhhhhhhhhHHHHHHHHHHHH
Confidence 4343333 489999999999987766443
No 205
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=2.9e-15 Score=124.96 Aligned_cols=161 Identities=15% Similarity=0.035 Sum_probs=96.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEE--EEee-CCceEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQR--TMLK-AGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~--~~~~-~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+....++|+++|++|||||||++.++..... ... ..|....... +... ....+.+|||||...
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------- 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE-KKY---IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------- 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC-CCC---CCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence 3445699999999999999999765543321 111 1222222222 2221 234889999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+......++..++++++|+|++++.+-.. ..++..+..... ..|+++++||+|.... ....+ ..
T Consensus 71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~~--~~~~~---------~~ 135 (215)
T PTZ00132 71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKDR--QVKAR---------QI 135 (215)
T ss_pred -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCccc--cCCHH---------HH
Confidence 22222334667899999999985544333 344444544432 2589999999997543 11111 11
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+....+..++. .|+.++.++++++.+|...+..
T Consensus 136 ~~~~~~~~~~~e------~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 136 TFHRKKNLQYYD------ISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence 223333444444 6788889999999888876654
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.67 E-value=1.3e-15 Score=138.34 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=103.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEee-------------------------C
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLK-------------------------A 68 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~-------------------------~ 68 (311)
...++.++|+++|+.++|||||+.+|++...... .....+.|.........+. .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3455679999999999999999999987421000 0112344544433221110 0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
...++||||||..+ +..........+|++++|+|++++. ...+...+..+.. .+. .|+++|+||
T Consensus 84 ~~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK 148 (411)
T PRK04000 84 LRRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNK 148 (411)
T ss_pred ccEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEe
Confidence 25799999999432 3333333445679999999998665 5555555555543 221 479999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|+... ......... +..++... +.++++ +|+.++.|++.|++.|...++
T Consensus 149 ~Dl~~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 149 IDLVSK--ERALENYEQ-----IKEFVKGTVAENAPIIP------VSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred eccccc--hhHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCcCHHHHHHHHHHhCC
Confidence 998764 322221221 23333221 223343 788899999999999988654
No 207
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.67 E-value=9.3e-16 Score=119.67 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=89.8
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee---CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK---AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~---~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
++|++|+|||||+|++++........ ..|. ......... .+..+.+|||||..+. .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 58999999999999999876521111 1222 222322221 2568999999996642 1222344
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.+.+|+++||+|++++....+...+.............|+++++||+|.... ........ ...........+
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~--~~~~~~~~------~~~~~~~~~~~~ 137 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE--RVVSEEEL------AEQLAKELGVPY 137 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc--cchHHHHH------HHHHHhhcCCcE
Confidence 6788999999999854443333222011111112234699999999998755 22221110 112223334555
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+. +|+..+.++.+++++|.
T Consensus 138 ~~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 138 FE------TSAKTGENVEELFEELA 156 (157)
T ss_pred EE------EecCCCCChHHHHHHHh
Confidence 55 56666788899888764
No 208
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.67 E-value=1.4e-15 Score=142.57 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.+.|+++|++|+|||||+|+|++.... ...+.+.|.+.....+.+. ....+.||||||+.+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 368999999999999999999998652 2222334443332222221 012489999999654
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+......++..+|++++|+|+++.+...+...+..+... ..|+++++||+|+..
T Consensus 82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 333333456788999999999877777777777666542 258999999999864
No 209
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.67 E-value=6.2e-15 Score=120.97 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee------CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK------AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~------~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
++|+++|.+|+|||||++.+++...........+++ +....+.+. ....+.||||+|-.. +
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------V 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------H
Confidence 479999999999999999999876422211111222 222223331 123689999999433 4
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC-----------------CCccCeEEEEEeccCCCCCChh
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG-----------------KKISDYMIVVFTGGDELEDNDE 156 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~nk~D~~~~~~~ 156 (311)
......+++++|++|+|+|++++-+-.. ..|+..+....+ .+...|+++|.||.|+.+. .
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r 145 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--K 145 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--c
Confidence 4445556889999999999986544433 345555554321 1123599999999998654 2
Q ss_pred cHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 157 TLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
.+...... .....+..+++......
T Consensus 146 ~~~~~~~~---~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 146 ESSGNLVL---TARGFVAEQGNAEEINL 170 (202)
T ss_pred ccchHHHh---hHhhhHHHhcCCceEEE
Confidence 11111100 01244566677775544
No 210
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=1.2e-15 Score=144.03 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=103.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccc------C-------CCCCcceeEEEEEEEee--CC--ceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK------A-------GSSGVTKTCEMQRTMLK--AG--QVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~------~-------~~~~~T~~~~~~~~~~~--~~--~~l~liDTPG~~~ 82 (311)
..+|+++|++|+|||||+++|+........ . ...|.|.......+.|. ++ ..++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 479999999999999999999865321110 0 11356666655555552 22 5789999999776
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+ ...+..++..+|++|+|+|++++.+..+...+..+.. . ..|+++|+||+|+.... .....
T Consensus 83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~----~ipiIiViNKiDl~~~~---~~~~~ 143 (595)
T TIGR01393 83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-N----DLEIIPVINKIDLPSAD---PERVK 143 (595)
T ss_pred H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcCCCccC---HHHHH
Confidence 3 2233445667899999999987776666544433332 1 24899999999975431 11111
Q ss_pred hhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+ +...+......++ .+||.++.|+.+|++.|.+.++.
T Consensus 144 ~e-----l~~~lg~~~~~vi------~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 144 KE-----IEEVIGLDASEAI------LASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HH-----HHHHhCCCcceEE------EeeccCCCCHHHHHHHHHHhCCC
Confidence 11 2222211011233 37899999999999999887764
No 211
>PRK00049 elongation factor Tu; Reviewed
Probab=99.67 E-value=2.9e-15 Score=135.64 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=107.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccc-------c-------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAF-------M-------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~-------~-------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|+.++|||||+++|++...- . ......+.|.......+.+ ++..+.++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence 356699999999999999999999873110 0 0011356777776666665 677899999999532
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEE-EEEeccCCCCCChhcHHHH
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMI-VVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~nk~D~~~~~~~~~~~~ 161 (311)
+..........+|++++|+|+..+....+...+..+... + .|.+ +++||+|+... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~--~~~~~~ 149 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch--HHHHHH
Confidence 333344456789999999999877777787777776653 3 3665 68999998753 222222
Q ss_pred hhhcCCchHHHHHHhcC-----CcEEEecCCch----hhhhhHHHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCD-----NRCVLFDNKTK----DAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~----~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. .+..++..++ .++++.+.... .+.....++..|++.|...++
T Consensus 150 ~~~----~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEM----EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 221 2555555443 23333222110 001112256788888887653
No 212
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=2.1e-15 Score=112.23 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++.+++|.||+|||||+-.+..... ++........+..+..+.+ +|. .+.||||+| .+.+....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeec-CCcEEEEEEeeccc-----------HHHHHHHH
Confidence 5678999999999999988766544 3322233445556666666 443 889999999 56788888
Q ss_pred HhccCCccEEEEEEECCCCCCh-hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSK-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++++|++++|.|+++.-+- +-..||+.++..+.. .|-++|.||.|..+. ..+.. .+.+.....-
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R--rvV~t-------~dAr~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER--RVVDT-------EDARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc--eeeeh-------HHHHHHHHhc
Confidence 8889999999999999844333 336778888877653 589999999998765 33321 1234444444
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +|++...+++..+..|.+.+
T Consensus 143 gie~FE------TSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 143 GIELFE------TSAKENENVEAMFHCITKQV 168 (198)
T ss_pred Cchhee------hhhhhcccchHHHHHHHHHH
Confidence 655554 78888889999988887655
No 213
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.66 E-value=1.3e-15 Score=138.32 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEEEeeCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~~~~~ 69 (311)
++|+++|+.++|||||+++|+....... +. ...+.|.+.....+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 5899999999999999999975432111 00 0135677777777777 78
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||+.+ +.......+..+|++|+|+|+..++...+...+..+.. .+. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 8999999999543 22222334567899999999987777766665555544 332 47999999999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~ 200 (311)
........+.+.... +..++...+. ++++ +|+.++.|+..
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~iip------iSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDVTFIP------LSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCCccEEE------eecccCCCCcc
Confidence 875422223322222 4444444332 3444 56666666553
No 214
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7e-16 Score=136.43 Aligned_cols=177 Identities=16% Similarity=0.190 Sum_probs=115.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..+.|+++|+||+|||||+|+|++.+...+. +-+|+|.+.....+.+ +|.++.|+||.|+.. .+.+.+...-....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA 342 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALGIERA 342 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHhHHHH
Confidence 4589999999999999999999999873332 3468999999888988 999999999999987 22333333333444
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHh-CCCc------cCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLF-GKKI------SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~~------~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
...+..+|+|++|+|+....+.++..+.+.+...- |-.. ..+++++.||.|...+- ...... .+.
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~-~~~~~~-------~~~ 414 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI-PEMTKI-------PVV 414 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc-ccccCC-------cee
Confidence 55677889999999996555556655555444321 1112 26899999999987540 001000 000
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+... |......++.++++...|...+.+.+.
T Consensus 415 -~~~~~~~~~--~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 415 -YPSAEGRSV--FPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred -ccccccCcc--cceEEEeeechhhhHHHHHHHHHHHHH
Confidence 000011111 111123577888999999998887653
No 215
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.66 E-value=5.6e-16 Score=124.15 Aligned_cols=115 Identities=17% Similarity=0.233 Sum_probs=74.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCc-ceeEE-----------------------------------------
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGV-TKTCE----------------------------------------- 60 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~-T~~~~----------------------------------------- 60 (311)
|+|+|..++|||||||+|+|...++++..+... .+.+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999876655443110 00000
Q ss_pred -----------EEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHH
Q 021534 61 -----------MQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129 (311)
Q Consensus 61 -----------~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l 129 (311)
..........++.||||||+.+...... ..+..+++.+|++|||+++++.++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0111111334799999999987433322 3333445788999999999977777766655554
Q ss_pred HHHhCCCccCeEEEEEecc
Q 021534 130 ESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 130 ~~~~~~~~~~~~ilv~nk~ 148 (311)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 44332 3599999984
No 216
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=1.4e-15 Score=145.59 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=102.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEE
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRT 64 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~ 64 (311)
+..+.++|+++|++++|||||+|+|++...... +. ...+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 455678999999999999999999987543111 00 01356667777777
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.+ ++..+.||||||+.+ +..........+|++++|+|+..+....+...+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 77 788999999999543 222222345678999999999867766665555555443 32 479999
Q ss_pred EeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHH
Q 021534 145 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 145 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~ 199 (311)
+||+|+.......+.+.... +..++...+. ++++ +|+.++.|+.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~iip------iSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHDVTFIP------ISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCCccEEE------EecccCCCcc
Confidence 99999875322333333332 4444444432 2444 5666666665
No 217
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.65 E-value=1.9e-15 Score=142.87 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEee----CCceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLK----AGQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~----~~~~l~liDTPG~ 80 (311)
+...+|+++|+.++|||||+++|+........ ....+.|.......+.|. .+..++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34579999999999999999999764321000 011355665555555552 1457999999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.++ ...+..++..+|++|+|+|++++....+...+..+.. . ..|+++|+||+|+... ....
T Consensus 85 ~dF-----------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-~----~lpiIvViNKiDl~~a---~~~~ 145 (600)
T PRK05433 85 VDF-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-N----DLEIIPVLNKIDLPAA---DPER 145 (600)
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----CCCEEEEEECCCCCcc---cHHH
Confidence 763 2223344667899999999987776666555444332 1 2489999999997543 1111
Q ss_pred HhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.... +...+......+++ .||.++.|+.+|+++|.+.++.
T Consensus 146 v~~e-----i~~~lg~~~~~vi~------iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 146 VKQE-----IEDVIGIDASDAVL------VSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHH-----HHHHhCCCcceEEE------EecCCCCCHHHHHHHHHHhCcc
Confidence 1111 22221110112333 7889999999999999887764
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=99.65 E-value=4.4e-15 Score=139.76 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMSK-------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~-------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
...+|+++|+.++|||||+++|++... +... ....+.|.......+.+ ++..+.+|||||..++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH
Confidence 458999999999999999999996421 1111 11246777777777888 88999999999987642
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..++..+|++|+|+|+.++....+...+..+.. .+ .|.++++||+|....
T Consensus 83 -----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~-~g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 -----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA-YG----LKPIVVINKVDRPGA 135 (607)
T ss_pred -----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH-cC----CCEEEEEECcCCCCC
Confidence 223344677899999999986666666666666554 22 488999999997643
No 219
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=8.3e-15 Score=119.97 Aligned_cols=164 Identities=16% Similarity=0.027 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCcHHHHHH-HHhCCcccccc--CCCCCccee----EEEE-------EEEeeCC--ceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATAN-SILGKKAFMSK--AGSSGVTKT----CEMQ-------RTMLKAG--QVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin-~l~g~~~~~~~--~~~~~~T~~----~~~~-------~~~~~~~--~~l~liDTPG~~~~ 83 (311)
.++|+++|.+|+|||||++ .+.+... ... .....+|.. .... ...+ ++ ..+.||||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhh
Confidence 4799999999999999996 5544321 111 011112221 1101 0112 33 48899999995421
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
+ ...+++++|++|+|+|++++.+-... .++..+..... ..|+++|.||+|+...........
T Consensus 80 ----------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~~~~~~~~~~ 143 (195)
T cd01873 80 ----------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRYADLDEVNRA 143 (195)
T ss_pred ----------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccccccchhhhc
Confidence 1 12357899999999999866544433 35666665542 258999999999753200000000
Q ss_pred ----------hhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 162 ----------LGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 162 ----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...........+....+..++. +||+++.|++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E------~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 144 RRPLARPIKNADILPPETGRAVAKELGIPYYE------TSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccccCCccCHHHHHHHHHHhCCEEEE------cCCCCCCCHHHHHHHHHH
Confidence 0000112245566666665554 799999999999988764
No 220
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.64 E-value=4.2e-15 Score=117.76 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|.+|+|||||+++++.... +....+.+ ......+.+ ++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f-~~~~~~~~---~~~~~~i~~-~~~~~~l~i~D~~g~~~---------~------ 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY-VQLESPEG---GRFKKEVLV-DGQSHLLLIRDEGGAPD---------A------ 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC-CCCCCCCc---cceEEEEEE-CCEEEEEEEEECCCCCc---------h------
Confidence 4799999999999999998876543 22111111 111233444 55 3688999999642 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||.|+.......+.... ...+....
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 12456799999999986555444 4555666554321 23599999999996422112222111 12333332
Q ss_pred C-CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 D-NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+ ..++. +||+++.|+++++..+.+
T Consensus 132 ~~~~~~e------~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYYE------TCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEEE------EecCCCCCHHHHHHHHHh
Confidence 2 34444 789999999999988764
No 221
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-15 Score=111.19 Aligned_cols=161 Identities=13% Similarity=0.088 Sum_probs=105.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
-.++|.++|.+.+|||||+-+.++.+.-+.-.+. .........+.-. ..-.+.||||.|.. .++..
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsT--vGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrti 86 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTI 86 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeee--eeeeEEEeEeeecccEEEEEEEecccch-----------hhhHH
Confidence 4579999999999999999999988753222222 2223333332221 22388999999943 34455
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++++++|+++|+++.-+-+. ..+.-.++..+-. ..|+|+|.||||+-.+ ..+... ..+.+...
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e--Rvis~e-------~g~~l~~~ 155 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE--RVISHE-------RGRQLADQ 155 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc--eeeeHH-------HHHHHHHH
Confidence 5567899999999999984333332 3444455544333 2489999999997655 444322 23566777
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.|..++. .|++.+-+++.+++.+...+
T Consensus 156 LGfefFE------tSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 156 LGFEFFE------TSAKENINVKQVFERLVDII 182 (193)
T ss_pred hChHHhh------hcccccccHHHHHHHHHHHH
Confidence 7776654 67777788888888776654
No 222
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.64 E-value=4.3e-15 Score=121.19 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+|+|++|+|||||++.+..... +.... .+........+.+ .+ ..+.+|||||...... + .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~--~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~---~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PEEYH--PTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------L---R 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccC--CcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------c---c
Confidence 5899999999999999999985543 12111 1111111223333 33 3578999999654211 1 1
Q ss_pred HhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC--CchHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKEIL 174 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~--~~~~~~~~ 174 (311)
...+..+|++++|+|+++.-+... ..++..+....+. .|+++|.||+|+.... ...+....... ......+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 123577899999999974433322 2456666654432 6999999999975321 11100000000 01122333
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+. .++. +||.++.|++++++.+.+.+
T Consensus 143 ~~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 143 KEIGAKKYME------CSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHhCCcEEEE------ccCCCCCCHHHHHHHHHHHH
Confidence 44443 3443 78899999999999998654
No 223
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=135.11 Aligned_cols=137 Identities=21% Similarity=0.225 Sum_probs=98.0
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
+|+..+...+++|+|.||+|||||+|.++..++ .....+.+|...-+.++.+ .-..+.++||||+.|....+..+.+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence 455567789999999999999999999998876 4444456666666666666 6678999999999986544333322
Q ss_pred H--HHHHHHhccCCccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 93 E--IVKCIGMAKDGIHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 93 ~--~~~~~~~~~~~~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
. |...+ .--.+|||++|.+ .+.+..+ ..+...++.+|.. +|+|+|+||+|.... +.+.+.
T Consensus 238 mqsITALA----HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~--edL~~~ 302 (620)
T KOG1490|consen 238 MQIITALA----HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP--EDLDQK 302 (620)
T ss_pred HHHHHHHH----HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc--cccCHH
Confidence 1 12221 1226899999998 4555554 5677778887754 799999999999877 555443
No 224
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=3.3e-15 Score=128.73 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc--CC--------------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK--AG--------------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~--~~--------------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+|+++|++|+|||||+|+|++....... .. ..+.|.......+.+ .+..++||||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 5899999999999999999764321110 00 013444455566677 788999999999654
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+...+..++..+|++++|+|++..........+..+.. . ..|+++++||+|....
T Consensus 77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-~----~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 --------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE-A----GIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECCccCCC
Confidence 22223334557799999999986666655555555543 2 2489999999997644
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=2.1e-15 Score=114.70 Aligned_cols=141 Identities=22% Similarity=0.293 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+|+|++|||||||+++|.|... ...-|..+.++. .+|||||=+- .. ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~~---------~~IDTPGEyi---E~----~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYYD---------NTIDTPGEYI---EN----PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEecc---------cEEECChhhe---eC----HHHHHHHHH
Confidence 5899999999999999999998764 112233332221 2699999442 11 223333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+...+|+|++|.|++.+...-.-.+.. .|. +|+|=|+||+|+..+. ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~----~f~----~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFAS----MFN----KPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhc----ccC----CCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 455789999999998544333323322 232 5999999999987321 33332 24455555654
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..+ .+|+.++.|+++|.++|.
T Consensus 122 ~if-----~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIF-----EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CeE-----EEECCCCcCHHHHHHHHh
Confidence 322 267888999999999875
No 226
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.63 E-value=2.8e-15 Score=125.78 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=107.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.-.|+++|-||+|||||+|+|+.... ....++.+|.......+.+.+...+++-|.||+..-.-.+.-+-..+-+.+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi- 272 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI- 272 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH-
Confidence 45689999999999999999999876 445567788888888777745556999999999764333333333343333
Q ss_pred hccCCccEEEEEEECCCCC--Chh-HHHHH-HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 100 MAKDGIHAVLLVFSIRNRF--SKE-EGAAI-HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~--~~~-~~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..++.++||+|++... ++- +...| ..|..+-..=..+|.++|.||+|..+..... +.++.+
T Consensus 273 ---ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~------------l~~L~~ 337 (366)
T KOG1489|consen 273 ---ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL------------LSSLAK 337 (366)
T ss_pred ---HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH------------HHHHHH
Confidence 3458999999998331 222 22222 2222221112346899999999975331111 234445
Q ss_pred hcCCc-EEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 176 LCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 176 ~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..... +++ .||..+.++.+|++.+..
T Consensus 338 ~lq~~~V~p------vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNPHVVP------VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCCcEEE------eeeccccchHHHHHHHhh
Confidence 44444 555 678888999999988764
No 227
>PLN03126 Elongation factor Tu; Provisional
Probab=99.63 E-value=1.6e-14 Score=132.81 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=95.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFM--------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+.++|+++|++++|||||+++|++..... ......+.|.......+.+ ++..++||||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 5567999999999999999999999632110 0111246777777666777 788999999999543
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
+..........+|++++|+|+.......+.+.+..+.. .|. .++++++||+|+... +.+.+.+
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~gi---~~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VGV---PNMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEecccccCH--HHHHHHH
Confidence 33333344557899999999987777777777766554 332 238889999998764 3333333
Q ss_pred hhcCCchHHHHHHhc
Q 021534 163 GRECPKPLKEILQLC 177 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (311)
.. .+..++..+
T Consensus 220 ~~----~i~~~l~~~ 230 (478)
T PLN03126 220 EL----EVRELLSSY 230 (478)
T ss_pred HH----HHHHHHHhc
Confidence 21 256666654
No 228
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.63 E-value=1.2e-14 Score=136.83 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.+.|+++|++|+|||||+|+|.|... ....+.+.|.+...+.+.+. .-..++||||||+.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 36899999999999999999998764 22222233333222211110 001378999999754
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.......+..+|++++|+|+++++...+...+..+.. . ..|+++++||+|..
T Consensus 84 -----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-~----~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 -----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-R----KTPFVVAANKIDRI 136 (586)
T ss_pred -----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-c----CCCEEEEEECcCCc
Confidence 23333344567899999999987777777777766654 2 35899999999975
No 229
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.8e-14 Score=107.37 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
++|+++|+.|+|||.|+..++..- ||.+.+ ...........++. ++. .+.||||.| ++++++..
T Consensus 8 fkivlvgnagvgktclvrrftqgl-fppgqg-atigvdfmiktvev-~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQG-ATIGVDFMIKTVEV-NGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-CCCCCC-ceeeeeEEEEEEEE-CCeEEEEEEeeccc-----------hHHHHHHH
Confidence 799999999999999999998654 333322 22334444555666 443 889999999 56677777
Q ss_pred HhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..+++.+|++|+|.|++ .+--.---+||..+.++....+ --|+|.||+|+.+. ..+...+. +-+...
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qig--------eefs~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIG--------EEFSEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHH--------HHHHHh
Confidence 78889999999999998 3333344678888888765433 36889999998765 33333322 222222
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
...|+ ..+||+...+++.|+..+.
T Consensus 142 qdmyf-----letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 142 QDMYF-----LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhh-----hhhcccchhhHHHHHHHHH
Confidence 22232 2467777889998887665
No 230
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=4.6e-14 Score=109.76 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=109.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMS-----KAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+|+|.|+.|+|||||+.++.......+ ..+..+ +|+...+..+.+.++..+.|+||||.
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq----------- 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ----------- 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc-----------
Confidence 47999999999999999999987653211 122233 67777777888855589999999994
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
.++.-+|....+++.++|+++|.+.+.+..+..+++.+..... .|+++..||.|+.+. . .++.++
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a--~---------ppe~i~ 143 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA--L---------PPEKIR 143 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC--C---------CHHHHH
Confidence 4466667777889999999999986666677788888776543 489999999998766 2 222344
Q ss_pred HHHHhc--CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 172 EILQLC--DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 172 ~~~~~~--~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+++..+ +.+++. .++..+.+..+.++.+..
T Consensus 144 e~l~~~~~~~~vi~------~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 144 EALKLELLSVPVIE------IDATEGEGARDQLDVLLL 175 (187)
T ss_pred HHHHhccCCCceee------eecccchhHHHHHHHHHh
Confidence 555544 444444 344445555655555543
No 231
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.1e-15 Score=132.26 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEeeCC--ceEEEEeCCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLKAG--QVVNVIDTPG 79 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG 79 (311)
.|.+...+++++.|-..|||||..+|+....+... ....|.|+..+...+.|.++ ..+++|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 36678899999999999999999998654431111 11258899999998888332 6899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHH
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~ 159 (311)
+.|+... .. .++.-++++|+|+|++++........+...-+. .-.+|+|+||+|+... ..+
T Consensus 135 HvDFs~E-------Vs----Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~a---dpe 195 (650)
T KOG0462|consen 135 HVDFSGE-------VS----RSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSA---DPE 195 (650)
T ss_pred cccccce-------eh----ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCC---CHH
Confidence 9997532 32 334456999999999988877776555444332 2369999999997644 223
Q ss_pred HHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 160 DYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
....+ +.+++..++..++. .||+++.++.++++.|.+.++...+
T Consensus 196 ~V~~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 196 RVENQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHHH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCCC
Confidence 22232 66777777777666 7999999999999999998876443
No 232
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.61 E-value=1.9e-14 Score=118.74 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|++|+|||||++.|++.....+ ..+.+.......... ..+..+.||||||... +...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHHH
Confidence 4689999999999999999998754211 111111111111110 1356899999999653 333344
Q ss_pred hccCCc-cEEEEEEECCCCCChh-H-HHHH-HHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGI-HAVLLVFSIRNRFSKE-E-GAAI-HILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~-d~il~v~d~~~~~~~~-~-~~~l-~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+++.+ +++|||+|+....... + ..++ ..+..........|++++.||+|+...
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 456666 9999999998331111 1 1122 222221111123599999999998754
No 233
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.61 E-value=4.6e-15 Score=130.39 Aligned_cols=174 Identities=20% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+..++|+|+|.+|+|||||||+|.|-..-..+..+.| +|.....|. .+.-.++++||.||++.+....+...+.+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 3568999999999999999999977432112222322 344444433 22445899999999988765555444433
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC-C------CChhcHHHHhhhcCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL-E------DNDETLEDYLGRECP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~-~------~~~~~~~~~~~~~~~ 167 (311)
. +...|.||+|.+ .+++..+..+.+.++++ | +|+++|-||+|.. . +..-..++.+++ ..
T Consensus 111 ~------~~~yD~fiii~s--~rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR 176 (376)
T PF05049_consen 111 K------FYRYDFFIIISS--ERFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IR 176 (376)
T ss_dssp T------GGG-SEEEEEES--SS--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HH
T ss_pred c------ccccCEEEEEeC--CCCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHH-HH
Confidence 2 334488777655 48999999988888874 3 5999999999951 1 100011111111 11
Q ss_pred chHHHHHHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 168 ~~~~~~~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+-+...+ .+++..++.... ..++..|.+.+..-++.
T Consensus 177 ~~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 177 ENCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHH
Confidence 11233333323 355665554322 35678888887766654
No 234
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.60 E-value=1.5e-15 Score=114.43 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc--ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFM--SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
||+|+|.+|+|||||+++|.+..... ......+.+.......+.. ....+.+||++|....... ..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~-----------~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQ-----------HQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCT-----------SH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccc-----------cc
Confidence 69999999999999999999877531 1111223333333333322 3336889999996432111 01
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+..+|++++|+|.+++-+... ..++.++..........|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11445699999999984433333 234445555443223369999999998
No 235
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.60 E-value=3.1e-14 Score=121.07 Aligned_cols=170 Identities=21% Similarity=0.211 Sum_probs=111.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
-|+++|-||+||||||++++.... .....+.+|.......+....+..+++-|.||+........-+-.++-+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER- 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER- 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh-
Confidence 368999999999999999998875 55556777777777766654667899999999986433333333444444333
Q ss_pred cCCccEEEEEEECCCCCC----hhHHH-HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 102 KDGIHAVLLVFSIRNRFS----KEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~----~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+.++++|+|++ +.. ..++. +...|..+-..=..+|.++|+||+|...+. +.++.+. ..+...
T Consensus 238 ---t~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~--------~~l~~~ 304 (369)
T COG0536 238 ---TRVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELK--------KALAEA 304 (369)
T ss_pred ---hheeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHH--------HHHHHh
Confidence 37999999998 322 23333 333444433333457999999999965431 3333322 223333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
++.....| +|+.++.+++.|+..+.+++...
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence 34333322 68888999999999999888653
No 236
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.1e-14 Score=129.09 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=121.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.|.++||-..|||||+..|-+.++ ......+.|.+...+.+.+. ....++++||||+ +.|..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-----------eAFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-----------EAFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-----------HHHHHH
Confidence 47899999999999999999998886 44456789999999999985 3479999999994 335554
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
-..-..-+|++++|+++++.+.+.+.+.++.++.. ..|+++++||+|..+.+...+...+.+. .-..+.+
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~~~-----gl~~E~~ 141 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQEY-----GLVPEEW 141 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHHHc-----CCCHhhc
Confidence 44445567999999999999999999888887763 3599999999998865323333333321 1112333
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..+.. .+.||.++.|+.+|+..|.-..
T Consensus 142 gg~v~~----VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 142 GGDVIF----VPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCceEE----EEeeccCCCCHHHHHHHHHHHH
Confidence 433322 3489999999999999887543
No 237
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.60 E-value=1.1e-14 Score=121.11 Aligned_cols=115 Identities=18% Similarity=0.267 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC--------------CCCCcceeEEEEEEEee-C--------CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKA--------------GSSGVTKTCEMQRTMLK-A--------GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~--------------~~~~~T~~~~~~~~~~~-~--------~~~l~liDT 77 (311)
.+|+++|+.++|||||+++|+......... ...+.|.......+.+. . +..+.||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999997654211100 01234444433333331 1 568899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
||+.++ ......++..+|++++|+|+..+........+...... ..|+++++||+|+.
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 998763 22334446678999999999877777766666655431 24899999999975
No 238
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.60 E-value=4.5e-15 Score=123.52 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------CCCCCcceeEEEEEEEee----CCceEEEEeCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSK-----------------AGSSGVTKTCEMQRTMLK----AGQVVNVIDTPGL 80 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------~~~~~~T~~~~~~~~~~~----~~~~l~liDTPG~ 80 (311)
+|+++|++|+|||||+++|++....... ....+.|.......+.+. ....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 001233433333333331 2357899999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
.++ ......++..+|++++|+|+.+..+.....++..+.. . ..|+++|+||+|.+
T Consensus 82 ~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~-~----~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL-E----GLPIVLVINKIDRL 136 (213)
T ss_pred cch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-c----CCCEEEEEECcccC
Confidence 763 2222334557799999999986666555444444332 1 25899999999986
No 239
>PLN00023 GTP-binding protein; Provisional
Probab=99.60 E-value=3e-14 Score=122.79 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=82.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--------------CCceEEEEeCCCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--------------AGQVVNVIDTPGL 80 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--------------~~~~l~liDTPG~ 80 (311)
.|....++|+|+|..|+|||||++.+.+...........+.+. ....+.+. ....+.||||+|-
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 3445569999999999999999999998764211111222222 22223331 1235899999994
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC----------CccCeEEEEEeccC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK----------KISDYMIVVFTGGD 149 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~nk~D 149 (311)
. .+..+...+++++|++|+|+|++++-+... ..++..+....+. ....|++||.||+|
T Consensus 94 E-----------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 94 E-----------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred h-----------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 3 355556667899999999999985444333 3566666654321 11258999999999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
+...
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 8643
No 240
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.59 E-value=4.4e-14 Score=118.09 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----------------------------------------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS---------------------------------------------- 52 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~---------------------------------------------- 52 (311)
..+.|+|+|++|+||||++++|+|...++.+.+.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999997643332211
Q ss_pred ---CCcceeEEEEEEEeeCCceEEEEeCCCCCCCC--CChHHHHHHHHHHHHhccCC-ccEEEEEEECCCCCChhH-HHH
Q 021534 53 ---SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS--ADPEFVSKEIVKCIGMAKDG-IHAVLLVFSIRNRFSKEE-GAA 125 (311)
Q Consensus 53 ---~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~--~~~~~~~~~~~~~~~~~~~~-~d~il~v~d~~~~~~~~~-~~~ 125 (311)
.+.+..+-...+..+....++||||||+.... .....+...+...+..++.. .+.|++|+|++..+...+ ..+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00000111111222123589999999997542 11244556666666666764 458999999986666666 455
Q ss_pred HHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 126 IHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 126 l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+.+.. ...++++|+||+|....
T Consensus 185 a~~ld~-----~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDP-----QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHH-----cCCcEEEEEECCCCCCc
Confidence 555543 23589999999998865
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=2.5e-14 Score=131.05 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|+.++|||||+.+|+....... .....+.|.......+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 4558999999999999999999875211000 001246788888888888 8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-------ChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-------SKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..++|+||||+.+ +..........+|++++|+|+..+. .....+.+..+.. .|. .++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeE
Confidence 88999999999654 3333334456789999999998554 2455566655544 332 358
Q ss_pred EEEEeccCCC--CCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDEL--EDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
|+++||+|.. ......+++.+.+ +...+...+. ++++ +|+.++.|+.
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~~~~~ip------iSa~~g~ni~ 202 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPEKVPFIP------ISGWQGDNMI 202 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcccceEEE------eecccCCCcc
Confidence 8999999943 2222444444443 5666655443 2333 5666666654
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=2.5e-14 Score=138.34 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=89.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----cC------------CCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----KA------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----~~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+.....+|+++|++|+|||||+|+|++...... .. ...+.|.......+.| ++..+++|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence 455678999999999999999999975332110 00 0246788888888888 899999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.++. . .+..++..+|++++|+|+.......+..++..+... ..|+++++||+|+...
T Consensus 85 ~~~~~-------~----~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFT-------V----EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccchh-------H----HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 87632 1 123345567999999999877777777777665542 2489999999998754
No 243
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.58 E-value=3.4e-14 Score=129.77 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=105.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCCcceeEEEEEEE---------------ee-------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-GSSGVTKTCEMQRTM---------------LK------------- 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-~~~~~T~~~~~~~~~---------------~~------------- 67 (311)
....++|+++|+..+|||||+.+|+|........ ...|.|....+.... +.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3567999999999999999999999865421111 112333333222110 00
Q ss_pred ----CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEE
Q 021534 68 ----AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 68 ----~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.+.||||||+.+ +...+......+|++++|+|+.++ ......+.+..+ ...|. +|++
T Consensus 111 ~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence 124789999999532 333333445678999999999854 455445555433 33443 4799
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+||+|+.+. ..+.+.... +..++... ..++++ .||.++.|++.|++.|.+.++.
T Consensus 176 VvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~~~~~iip------VSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 176 ILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIADNAPIIP------ISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEecccccCH--HHHHHHHHH-----HHHHHHhhccCCCeEEE------eeCCCCCCHHHHHHHHHhhCCC
Confidence 99999998754 444433332 34444321 233444 7889999999999999976543
No 244
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=3.1e-14 Score=137.53 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc----cC------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS----KA------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----~~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+++|++|+|||||+|+|+....... .. ...+.|.......+.| .+..++|+||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 44578999999999999999999974221000 00 1246788888888888 8999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ..+ ...++..+|++|+|+|+...+...+...+..+.+. + .|+++++||||....
T Consensus 86 ~~f-------~~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 652 112 33335566999999999888888888888877763 2 488999999998754
No 245
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=2.6e-14 Score=138.16 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=90.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc----C------------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK----A------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----~------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+++|++++|||||+|+|+........ . ...+.|.......+.| ++..+++|||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 445789999999999999999999753211000 0 1346788888888888 8999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+ +...+..++..+|++|+|+|+..+....+..++..+... + .|+++++||+|....
T Consensus 84 ~~-----------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VD-----------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred HH-----------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 54 222344456677999999999878888887777776652 2 489999999998754
No 246
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.56 E-value=1.7e-13 Score=114.55 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.+|+++|.+|+|||||++++.+...... ..+..+.......... . ...+.+|||+| ..++...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~g-----------q~~~~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG--YPPTIGNLDPAKTIEP-YRRNIKLQLWDTAG-----------QEEYRSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCccc--CCCceeeeeEEEEEEe-CCCEEEEEeecCCC-----------HHHHHHHH
Confidence 8999999999999999999998775211 1111111111111111 2 34688999999 34566777
Q ss_pred HhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 99 GMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++.+++++++|+|... +.......+...+....+. ..|+++|.||+|+...
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccc
Confidence 788999999999999873 2333335555566665542 3599999999998765
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=9e-14 Score=124.39 Aligned_cols=163 Identities=15% Similarity=0.169 Sum_probs=122.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..+.|-+||+...|||||+.+|-+..+ ......|.|.++..+.+.++.|..++|.||||+ ..|..+-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH-----------aAF~aMR 218 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH-----------AAFSAMR 218 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH-----------HHHHHHH
Confidence 457899999999999999999998876 334467899999999999988999999999994 4455555
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..-....|.+++|+-++++..+...+.++..+. +..|+|+.+||+|....+-+.+...+.. ..-.++.+|
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~G 288 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLG 288 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcC
Confidence 556667899999999988888888887776665 4469999999999764422222222221 122345566
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+.. .+.||+++.|++.|.+.+.-.
T Consensus 289 GdVQv----ipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 289 GDVQV----IPISALTGENLDLLEEAILLL 314 (683)
T ss_pred CceeE----EEeecccCCChHHHHHHHHHH
Confidence 66544 347899999999999987644
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.56 E-value=3.5e-14 Score=137.50 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-------cC---------CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-------KA---------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-------~~---------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+|+|+.|+|||||+++|+....... +. ...+.|.......+.| .+..+.+|||||.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~ 83 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGH 83 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCc
Confidence 34578999999999999999999975321100 00 0135566666777888 8899999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++ ...+..++..+|++++|+|++.+........+..+... ..|+++++||+|....
T Consensus 84 ~df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 84 IDF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence 652 22333446677999999999877776666666655442 2589999999997753
No 249
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.55 E-value=3e-14 Score=107.36 Aligned_cols=158 Identities=19% Similarity=0.230 Sum_probs=108.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.++|+++|..=+|||||+=+..... |...+.. ...+..+.... ....+.||||.| ++.+-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAG-----------QErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAG-----------QERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhccccccc----ceeeeeeeeccc-----------hHhhh
Confidence 4999999999999999987766443 2222211 11222222111 233789999999 34455
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..-..++++.+++|+|+|++++-+-.. ..|+..|+.+.|... -+++|.||+|+-+. ..+.. .....+.
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt~-------qeAe~YA 145 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVTR-------QEAEAYA 145 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhhH-------HHHHHHH
Confidence 555567899999999999996654443 567778889888865 69999999997644 22211 1234556
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..|..|+. +||..+.|+.+|++.+...+-
T Consensus 146 esvGA~y~e------TSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 146 ESVGALYME------TSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred Hhhchhhee------cccccccCHHHHHHHHHHHHH
Confidence 666777776 899999999999998876543
No 250
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.5e-13 Score=119.80 Aligned_cols=142 Identities=21% Similarity=0.294 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc---------------cC--------------CCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS---------------KA--------------GSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~---------------~~--------------~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++++|+|+..+|||||+-.|+....... .. ...|.|..+....++. +
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-D 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-C
Confidence 4569999999999999999999865432100 00 0157888888888888 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
...++|+|+||+-| +..-.......+|+.|+|+|++.. ..+..++-+ .|....|. ..+
T Consensus 84 k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~l 148 (428)
T COG5256 84 KYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQL 148 (428)
T ss_pred CceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ceE
Confidence 88999999999655 333333345678999999999844 444444433 45555664 589
Q ss_pred EEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 142 ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
|+++||+|..+-+....++.+.. +..+++.+|-.
T Consensus 149 IVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 149 IVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred EEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 99999999987655677766665 66677777643
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.54 E-value=9.1e-14 Score=129.44 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--cC------------------CCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--KA------------------GSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~~------------------~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
....+|+++|++|+|||||+++|+....... +. ...+.|.......+.+ ++..+.||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 4568999999999999999999863221100 00 0124555566667777 8899999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++ ......++..+|++|+|+|++..+......+++.+.. . ..|+++++||+|....
T Consensus 88 PG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~----~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-R----DTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-c----CCCEEEEEECccccCC
Confidence 997652 2222334567899999999986676666666654443 2 2599999999997643
No 252
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.54 E-value=1e-13 Score=129.08 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccc--cC------------------CCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMS--KA------------------GSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~~------------------~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
....+|+++|++|+|||||+++|+....... +. ...+.|.......+.+ ++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 3568999999999999999999963221000 00 0123455555666777 8889999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++. .....++..+|++|+|+|++.++......++..... . ..|+++++||+|....
T Consensus 87 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~----~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFS-----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-R----DTPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhH-----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-c----CCCEEEEEECCccccc
Confidence 9987632 122233556799999999987776666666655443 2 2599999999997654
No 253
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=104.96 Aligned_cols=162 Identities=17% Similarity=0.123 Sum_probs=110.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+++.|+|.+-+|||||+..++.... ...+.+.+.++.-...+++..|. ++.||||.| ++.+++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkf--aelsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKF--AELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcc--cccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence 58899999999999999999987764 22222222222222223343333 789999999 5678888
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++++.-++++|+|++++-+-+. ..++.......+.+...-+.+|.+|+|+... ..+... ....+...
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~E-------EaEklAa~ 145 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAE-------EAEKLAAS 145 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHH-------HHHHHHHh
Confidence 8888999999999999996655444 4455555544442222235677899998744 222211 13556677
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
||-.++. +|++++.|+++.+..|.+-+
T Consensus 146 hgM~FVE------TSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFVE------TSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred cCceEEE------ecccCCCcHHHHHHHHHHHH
Confidence 7877776 88999999999998887644
No 254
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.54 E-value=2.3e-14 Score=106.69 Aligned_cols=162 Identities=15% Similarity=0.127 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.....+.++|-.++|||||+|.+...... ..-+.|.....+.+.- +...+.+||.||- ..+...
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~tk-gnvtiklwD~gGq-----------~rfrsm 81 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQ-----------PRFRSM 81 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEecc-CceEEEEEecCCC-----------ccHHHH
Confidence 34578999999999999999988654331 1234566677777655 6679999999993 447888
Q ss_pred HHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..+++++++|+||+|+.+ .++..-.++...|.+-- =...|++++.||.|..+. -.-.+.+.. ..+..
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~--l~gip~LVLGnK~d~~~A--L~~~~li~r------mgL~s 151 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS--LTGIPLLVLGNKIDLPGA--LSKIALIER------MGLSS 151 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh--hcCCcEEEecccccCccc--ccHHHHHHH------hCccc
Confidence 8889999999999999973 34433333333333211 123599999999998755 222222221 11111
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....++.|. +|++...+++.++++|.++-
T Consensus 152 itdREvcC~s----iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREVCCFS----ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccceEEEEE----EEEcCCccHHHHHHHHHHHh
Confidence 1123344443 46666689999999998764
No 255
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.53 E-value=7.8e-14 Score=117.70 Aligned_cols=95 Identities=17% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
--+..+.-+|+++|.|++|||||+|.|+|... .....+.+|..+.-..+.+ +|-.++|+|+||+.........-..+
T Consensus 57 ~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~ 133 (365)
T COG1163 57 AVKKSGDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQ 133 (365)
T ss_pred eEeccCCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcce
Confidence 33455678999999999999999999999875 4445566777776666777 99999999999987643222211111
Q ss_pred HHHHHHhccCCccEEEEEEECC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+-...+.+|+|++|+|+.
T Consensus 134 ----vlsv~R~ADlIiiVld~~ 151 (365)
T COG1163 134 ----VLSVARNADLIIIVLDVF 151 (365)
T ss_pred ----eeeeeccCCEEEEEEecC
Confidence 223467789999999987
No 256
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.53 E-value=2.1e-13 Score=124.82 Aligned_cols=155 Identities=16% Similarity=0.202 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|+.++|||||+.+|+...... ......+.|.......+.+ .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 456999999999999999999886422100 0001246788888888887 8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CC------hhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FS------KEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
++.++|+||||+.+ +.......+..+|++|+|+|+... +. ...++.+..+.. .|. .++
T Consensus 84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQM 148 (447)
T ss_pred CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---CcE
Confidence 88999999999543 444444556788999999999843 32 333444433332 332 368
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~ 199 (311)
|+++||+|.... ....+.+.+.+ +..++...|. .+++ +|+.++.|+.
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~~~~~~~~ip------iSa~~G~ni~ 202 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGYNPDKIPFVP------ISGFEGDNMI 202 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------Eecccccccc
Confidence 999999997622 11334433443 6666666552 2344 5666666653
No 257
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.8e-14 Score=109.84 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=111.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
..+...+.+|+++|--||||||+++.|--..... ..+|..+.+..+.+ .+..+++||..|-. .
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~-----------k 73 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQE-----------K 73 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCc-----------c
Confidence 3456678999999999999999999885544322 24566677777777 78899999999943 3
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
++..+..+++..+++|||+|.+++..-.+ .++...+... .-...|+++..||.|+... .+..+.-+. .
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~--~l~~~~llv~aNKqD~~~a--ls~~ei~~~------L 143 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEP--ELRNAPLLVFANKQDLPGA--LSAAEITNK------L 143 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc--ccCCceEEEEechhhcccc--CCHHHHHhH------h
Confidence 66678888999999999999985433222 2333333211 1134599999999998766 333322221 1
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+-..++...+.. .++|.++.|+.+-++++.+.+.
T Consensus 144 ~l~~l~~~~w~iq----~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 144 GLHSLRSRNWHIQ----STCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred hhhccCCCCcEEe----eccccccccHHHHHHHHHHHHh
Confidence 1222223333332 2466778999999999988764
No 258
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.51 E-value=7.6e-13 Score=116.17 Aligned_cols=190 Identities=14% Similarity=0.107 Sum_probs=110.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCC---cceeEEE---EEEEeeCC----ceE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------AGSSG---VTKTCEM---QRTMLKAG----QVV 72 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------~~~~~---~T~~~~~---~~~~~~~~----~~l 72 (311)
..+.+.|+|+|+.++|||||||++.+.-++|.. .+.+| +|++..+ ..+++... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 346699999999999999999999998433322 22345 6666666 44444333 589
Q ss_pred EEEeCCCCCCCCCChHHHHHH--------------HHHH----HHhccC-CccEEEEEE-ECC------CCCChhHHHHH
Q 021534 73 NVIDTPGLFDSSADPEFVSKE--------------IVKC----IGMAKD-GIHAVLLVF-SIR------NRFSKEEGAAI 126 (311)
Q Consensus 73 ~liDTPG~~~~~~~~~~~~~~--------------~~~~----~~~~~~-~~d~il~v~-d~~------~~~~~~~~~~l 126 (311)
++|||+||.+.......-.+. |..+ ....+. .+|..|+|. |.+ +.+...+..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998765332211111 0000 011123 678888888 774 35666778888
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
..|++. .+|+++|+|+.|-..+ .... . ...+-.+.+.++.+. + +.......+..+++.+.
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~~--et~~-l--------~~~l~eky~vpvl~v-~---c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYHP--ETEA-L--------RQELEEKYDVPVLAM-D---VESMRESDILSVLEEVL 233 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCCc--hhHH-H--------HHHHHHHhCCceEEE-E---HHHcCHHHHHHHHHHHH
Confidence 888873 3699999999994433 1111 1 122334445554442 2 23344456666666554
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q 021534 207 SVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (311)
--.+-.....+.+..+..+.
T Consensus 234 ~EFPv~Ei~~~~P~Wve~L~ 253 (492)
T TIGR02836 234 YEFPILEINIDLPSWVEVLD 253 (492)
T ss_pred hcCCceEEEeeCchHHHhcC
Confidence 33333333334444444443
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=2.8e-12 Score=115.38 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML--------------------KA---GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~l~liDT 77 (311)
++|+++|.||+|||||+|+|++... .....+++|.......... .+ ...+.+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 5899999999999999999999865 3234456665555543221 01 246889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
||+.........+...+. ..++.+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL----~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFL----DDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHH----HHHHHCCEEEEEEeCC
Confidence 998753222222333332 2356679999999986
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.50 E-value=9.9e-13 Score=114.89 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=56.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------------CCceEEEEeCCC
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------------AGQVVNVIDTPG 79 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------------~~~~l~liDTPG 79 (311)
|+++|.||+|||||+|+|++... .....+.+|.........+. ....+.||||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~--~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV--EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC--cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999999875 22334455555444332210 124799999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+.........+...+ ...++.+|++++|+|++
T Consensus 79 lv~ga~~~~glg~~f----L~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKF----LDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHH----HHHHHHCCEEEEEEeCC
Confidence 864221112222222 23366779999999986
No 261
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.2e-12 Score=98.12 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEE--EEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQR--TMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~--~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
++++++|+.|+|||.|+..+..... ... .+.|..+.... +.. .+ .++.||||.| ++.+++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDd---ssHTiGveFgSrIinV-GgK~vKLQIWDTAG-----------QErFRS 73 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KDD---SSHTIGVEFGSRIVNV-GGKTVKLQIWDTAG-----------QERFRS 73 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-ccc---ccceeeeeecceeeee-cCcEEEEEEeeccc-----------HHHHHH
Confidence 7899999999999999999876543 222 23344333332 222 33 3889999999 677888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++.+.++|.|++++-+-+. ..||.-++.+..+. .-++++.||.|+-.. ..+. +.+...
T Consensus 74 VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~--R~Vt----------flEAs~ 139 (214)
T KOG0086|consen 74 VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPE--REVT----------FLEASR 139 (214)
T ss_pred HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChh--hhhh----------HHHHHh
Confidence 88899999999999999986655444 34555556554432 246777899997644 2221 122222
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
.|......| ..+|+.+++++++.+-...
T Consensus 140 FaqEnel~f---lETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 140 FAQENELMF---LETSALTGENVEEAFLKCA 167 (214)
T ss_pred hhcccceee---eeecccccccHHHHHHHHH
Confidence 233222222 2368888999988765443
No 262
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.3e-12 Score=115.06 Aligned_cols=122 Identities=21% Similarity=0.255 Sum_probs=89.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC-----------------------------------------cce
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG-----------------------------------------VTK 57 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~-----------------------------------------~T~ 57 (311)
..-+|++.|.+++||||+||+++...++|.+..+.. .+-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 457999999999999999999999988776544300 011
Q ss_pred eEEEEEEEeeCC------ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 58 TCEMQRTMLKAG------QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 58 ~~~~~~~~~~~~------~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
......+.|+++ ..+.++|.||++-. .+..+|+...+..+|++|||+.+.+-++..+..++..+.+
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 111222444333 27899999998853 3456666677888999999999987899888888877665
Q ss_pred HhCCCccCeEEEEEeccCCCCC
Q 021534 132 LFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 132 ~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. ..+++++.||||...+
T Consensus 260 ~-----KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 E-----KPNIFILNNKWDASAS 276 (749)
T ss_pred c-----CCcEEEEechhhhhcc
Confidence 3 2478888999997654
No 263
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.47 E-value=4.5e-13 Score=111.39 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
||+++|+.|+||||..+.+++... |......+.|..+....+.......+.|||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 689999999999999999997653 23344567888888888876356699999999987643210 00011122
Q ss_pred cCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.+++++|||+|+. ..+...-..+...+..+.......++.+++.|+|++.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 67789999999998 44433333333344433322334589999999998865
No 264
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=7.6e-12 Score=104.77 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=74.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+...|+++|.+|+|||||+|.|++...........+ +. ..... .+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i----~i~~~-~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI----TVVTG-KKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE----EEEec-CCceEEEEeCCchH----------HHHHH
Confidence 34458899999999999999999987632111111112 11 11122 67789999999832 11222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELED 153 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~ 153 (311)
. ...+|++++|+|++..+...+..++..+... | .| +++|+||+|.+..
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCCc
Confidence 2 3457999999999877777777777777653 2 35 5569999998744
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.44 E-value=2.5e-13 Score=108.08 Aligned_cols=121 Identities=16% Similarity=0.217 Sum_probs=65.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+++|++|+|||+|+..|.......+..+ ..... .+.+....+..+.|||+||+...+ ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~- 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---MENNI-AYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL- 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH-
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---ccCCc-eEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh-
Confidence 46899999999999999999987653222221 11111 111111145689999999987632 1121110
Q ss_pred hccCCccEEEEEEECCCCCChh----HHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKE----EGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~----~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+.+.+.+||||+|++ .+... ...+...|....-.....|++++.||.|+...
T Consensus 71 ~~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hchhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1245679999999987 22222 22333333332222234599999999998754
No 266
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.4e-13 Score=102.86 Aligned_cols=170 Identities=13% Similarity=0.097 Sum_probs=112.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKA---GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.....|+++|.-++|||||+-++--...-..+. +...+|......++.+ .+..+.+||.-| ++..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgG-----------Qe~l 82 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGG-----------QESL 82 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCC-----------hHHH
Confidence 455889999999999999998763221101111 2234677777788888 788999999988 4557
Q ss_pred HHHHHhccCCccEEEEEEECCC--CCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRN--RFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+.+..+|..+|++|||+|+++ ++......+-..+..-.- ...|++++.||-|+-.. ....+...- +.
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~l--eg~p~L~lankqd~q~~--~~~~El~~~-----~~- 152 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKL--EGAPVLVLANKQDLQNA--MEAAELDGV-----FG- 152 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHh--cCCchhhhcchhhhhhh--hhHHHHHHH-----hh-
Confidence 7777788888999999999984 444433333333332211 12499999999997655 333322111 12
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
..+..+.+..+|. ++|+.++.|+++-+.|+...++.+
T Consensus 153 ~~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 LAELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 1233344444432 379999999999999999888765
No 267
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.2e-12 Score=93.96 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++.+|+.+|-.++||||++..|.-... ....+|+...+..+.+ .+..+++||..| +..|+.
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGG-----------qd~iRp 76 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGG-----------QDKIRP 76 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccC-----------chhhhH
Confidence 45579999999999999999988854332 1123455666666777 788999999999 345888
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc--CeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS--DYMIVVFTGGDELED-NDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~--~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (311)
.|..++++..++|||+|..++-.-++ .-..+....++... .+++++.||-|+... ....+.+++.- .
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~ee--Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL------e-- 146 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEE--ARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL------E-- 146 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHH--HHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc------c--
Confidence 99999999999999999874422111 22234444444222 378888999998755 11334444432 1
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+.-+.+.++ .++++.++.++.+-+.++.+.+
T Consensus 147 -~~r~~~W~v----qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 -RIRDRNWYV----QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred -cccCCccEe----eccccccchhHHHHHHHHHhhc
Confidence 112444444 2356667788888888877654
No 268
>PTZ00416 elongation factor 2; Provisional
Probab=99.42 E-value=1.1e-12 Score=128.81 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=83.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee---------CCceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK---------AGQVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------~~~~l~ 73 (311)
.+...+|+++|+.++|||||+++|++......... ..+.|.......+.|. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45678999999999999999999987543111000 0233444333344442 155799
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
|+||||+.+ +...+..++..+|++|+|+|+..++...+..++..+... ..|+++++||+|..
T Consensus 96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 999999766 222334456778999999999888888887777766652 24899999999986
No 269
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.41 E-value=3e-12 Score=104.41 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=102.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|.+|+|||+|...+++... .....+...+.......+.- ....+.|+||+|... +.....
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~-----------~~~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDG-EVCMLEILDTAGQEE-----------FSAMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECC-EEEEEEEEcCCCccc-----------ChHHHH
Confidence 47999999999999999988887664 22222222222222222221 334788999999433 333333
Q ss_pred hccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++...|++++|++++++-+-.+ ..+...+....+.+. .|+++|.||+|+... ..+... .-..+...++
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~-~PivlVGNK~Dl~~~--R~V~~e-------eg~~la~~~~ 139 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDD-VPIILVGNKCDLERE--RQVSEE-------EGKALARSWG 139 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC-CCEEEEEEcccchhc--cccCHH-------HHHHHHHhcC
Confidence 45677899999999986665555 344455544334322 599999999998753 222111 1233445555
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +||....++++++..+...+..
T Consensus 140 ~~f~E------~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIE------TSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEE------eeccCCcCHHHHHHHHHHHHHh
Confidence 55554 6777778899999888876644
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.41 E-value=7.1e-13 Score=96.21 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+++|..|+|||||+++|-|....... |..+ +| ++. ..|||||-+-. +....+.+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQAv-----e~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQAV-----EF-NDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------ccee-----ec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 58999999999999999999998753221 2222 22 111 16999995531 2334444555
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|+++||..++++-+.-.-.++. . ..+|+|=|+||.|+.++ ..+.. .+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~----~----~~k~vIgvVTK~DLaed--~dI~~---------~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLD----I----GVKKVIGVVTKADLAED--ADISL---------VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCccccc----c----cccceEEEEecccccch--HhHHH---------HHHHHHHcCCc
Confidence 567889999999887553332222222 1 22479999999998866 44432 34455555644
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++. .|+...+|+++|++.+..
T Consensus 122 ~IF~-----~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFE-----TSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEE-----EeccCcccHHHHHHHHHh
Confidence 3331 566777999999998865
No 271
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=1.9e-12 Score=127.50 Aligned_cols=120 Identities=15% Similarity=0.199 Sum_probs=83.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee--------------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK-------------- 67 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~-------------- 67 (311)
......+|+|+|+.++|||||+++|+.......... ..+.|.......+.|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 345678999999999999999999986543111100 1234444444444442
Q ss_pred -CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 68 -AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 -~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..++||||||+.| +......++..+|++|+|+|+..++...+...++.+... ..|+++++|
T Consensus 95 ~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iN 158 (843)
T PLN00116 95 GNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN 158 (843)
T ss_pred CCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEE
Confidence 155789999999766 333334445678999999999888887777777665542 258999999
Q ss_pred ccCCC
Q 021534 147 GGDEL 151 (311)
Q Consensus 147 k~D~~ 151 (311)
|+|..
T Consensus 159 K~D~~ 163 (843)
T PLN00116 159 KMDRC 163 (843)
T ss_pred CCccc
Confidence 99987
No 272
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.40 E-value=1e-12 Score=97.23 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=103.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
++....++|+++|-.|+|||||+..|.+++... ...|..+....+.+...-.+++||..|- +.|
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~h-----ltpT~GFn~k~v~~~g~f~LnvwDiGGq-----------r~I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRH-----LTPTNGFNTKKVEYDGTFHLNVWDIGGQ-----------RGI 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhh-----ccccCCcceEEEeecCcEEEEEEecCCc-----------ccc
Confidence 455678999999999999999999999988622 2234444555555534468999999983 448
Q ss_pred HHHHHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
+..|+.++..+|++|||+|.++. +........+++....- +..|+.+.-||-|++.. ...++.... . .+.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eeia~k-l--nl~- 147 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEIALK-L--NLA- 147 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHHHHh-c--chh-
Confidence 88899999999999999997632 33223344444433221 22489999999998855 333332221 0 011
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+...+.. +|+.+..++..-.+++..
T Consensus 148 ---~lrdRswhIq~---csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 148 ---GLRDRSWHIQE---CSALSLEGSTDGSDWVQS 176 (185)
T ss_pred ---hhhhceEEeee---CccccccCccCcchhhhc
Confidence 11233333333 355556666666666654
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.39 E-value=3.3e-12 Score=123.68 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=78.5
Q ss_pred EcCCCCcHHHHHHHHhCCccccccC----------------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKA----------------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~----------------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
+|++|+|||||+++|+......... ...+.|.......+.+ .+..+++|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 6999999999999996543211110 0145677777778888 8899999999997642
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+..++..+|++++|+|++..........+..+... ..|+++|+||+|....
T Consensus 74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence 12222335567999999999866666666666555432 2489999999997644
No 274
>PTZ00258 GTP-binding protein; Provisional
Probab=99.39 E-value=3.6e-12 Score=113.50 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTP 78 (311)
.......+|+++|.||+|||||+|+|++... .....+++|.......+.+.+. ..+.++|||
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp 93 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA 93 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence 3445678999999999999999999999875 4445678888887777766322 258999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|+.........+...+. ..++.+|++++|+|+.
T Consensus 94 GLv~ga~~g~gLg~~fL----~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 94 GLVKGASEGEGLGNAFL----SHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcCcCCcchhHHHHHHH----HHHHHCCEEEEEEeCC
Confidence 99854322233333333 3356679999999974
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.38 E-value=1.2e-12 Score=126.98 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccc--------------cccCCCCCcceeEEEE----EEEeeCCceEEEEeCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAF--------------MSKAGSSGVTKTCEMQ----RTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~--------------~~~~~~~~~T~~~~~~----~~~~~~~~~l~liDTPG 79 (311)
....+|+++|+.|+|||||+++|+..... .......+.|...... .+.+ .+..++||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCC
Confidence 35689999999999999999999743110 0000012334443322 2444 677899999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+.++. .....++..+|++|+|+|+.......+...+..+.+. ..|.++++||+|...
T Consensus 96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 88742 1123345677999999999867766666666554432 237789999999864
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.38 E-value=5.2e-11 Score=104.28 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=69.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHH-HHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI-LESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 147 (311)
+..+.||||+|+.... .. + ...+|.+++|++.. ...+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 5688999999988531 11 2 22469999997622 2333333221 2221 24899999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
||+... ......... +...+.. +..+++. +|+.++.|+++|++.|.++.+. .++.+
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~------vSA~~g~GIdeL~~~I~~~~~~----l~~sg 266 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLT------CSALEGEGIDEIWQAIEDHRAA----LTASG 266 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEE------EECCCCCCHHHHHHHHHHHHHH----hccCC
Confidence 998865 333333222 3333332 1234444 6888899999999999998753 45555
Q ss_pred HHHHH
Q 021534 221 IFAEL 225 (311)
Q Consensus 221 ~~~~~ 225 (311)
.+.+.
T Consensus 267 ~l~~~ 271 (332)
T PRK09435 267 EFAAR 271 (332)
T ss_pred hHHHH
Confidence 55443
No 277
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.9e-13 Score=100.47 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-C-----C----ceEEEEeCCCCCCCCCChHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-A-----G----QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~-----~----~~l~liDTPG~~~~~~~~~~~ 90 (311)
++.+.+|.+|+|||||+...+....- .... ..+.++.....+.+. . | ..+.||||.|
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~-~qFI-sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG----------- 76 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN-TQFI-STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG----------- 76 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc-ceeE-EEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------
Confidence 56788999999999999877655431 1100 011122222222221 0 1 1578999999
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCC-hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFS-KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
++++++....+++.+-++++++|.++.-+ .+-+.|+..|+.+.-. ...-+++..||+|+.+. ..+.+. .
T Consensus 77 QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~--R~Vs~~-------q 146 (219)
T KOG0081|consen 77 QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQ--RVVSED-------Q 146 (219)
T ss_pred HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhh--hhhhHH-------H
Confidence 56677777777888999999999983332 3346667766643321 11348999999997654 333321 2
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..+.+.+|+. +||-++.+++..++.+..++
T Consensus 147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence 46788888999887 66666777776666655544
No 278
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.38 E-value=2.9e-12 Score=109.37 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=63.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ----------------VVNVIDTPGLFDSSAD 86 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~----------------~l~liDTPG~~~~~~~ 86 (311)
|+++|.||+|||||+|+|++... .....+++|.......+.+.+.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999886 33455778878777777663221 4999999999864322
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
...+...+.. .++.+|++++|+|+.
T Consensus 79 ~~glg~~fL~----~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLS----HIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHH----HHHhCCEEEEEEeCc
Confidence 2333333332 356789999999874
No 279
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.5e-12 Score=100.24 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
--++++++|..++||||+|.+.+..-. +........+..-...+... .+..+.+|||.| .+++...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif--TkdykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc--ccccccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHHH
Confidence 458999999999999999999885432 22222222222222222221 345778999999 3445555
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++.+.++|++.+++.+-+. ..+-+.+.+-++. .|.++|-||+|++++ ..+..- ....+...
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved--s~~~~~-------evE~lak~ 153 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED--SQMDKG-------EVEGLAKK 153 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh--hhcchH-------HHHHHHHH
Confidence 5667999999999999987766554 4555566665554 699999999999876 333221 13445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.+.+++. +|.+..-++...+..+.+
T Consensus 154 l~~RlyR------tSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 154 LHKRLYR------TSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred hhhhhhh------hhhhhhhhhHHHHHHHHH
Confidence 5566655 677777777777776654
No 280
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=7.1e-12 Score=106.67 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=74.4
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.+|||||....... ......+.+.+.... +++++||+|+++..+..+.....++....-.....|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999996553211 222333333333222 799999999986566666444433321110112359999999999
Q ss_pred CCCCChhcHHHHhhhcCC-------------------chHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 150 ELEDNDETLEDYLGRECP-------------------KPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.... ............ ..+...+...+ .++++ .|+.++.++++|+++|.+.
T Consensus 174 ~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 174 LLSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hcCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHHH
Confidence 8866 333222221000 01112223333 23344 5677889999999999988
Q ss_pred HHH
Q 021534 209 IVQ 211 (311)
Q Consensus 209 ~~~ 211 (311)
++.
T Consensus 246 l~~ 248 (253)
T PRK13768 246 FCG 248 (253)
T ss_pred cCC
Confidence 754
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.36 E-value=7e-12 Score=110.40 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~~~ 84 (311)
++|+++|.||+|||||+|+|++... .....+++|.......+.+.+. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999999874 3345577887777666655222 258999999998643
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.....+...+. ..++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL----~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFL----ANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHH----HHHHhCCEEEEEEeCC
Confidence 22233333333 3356789999999984
No 282
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.36 E-value=4.4e-12 Score=106.97 Aligned_cols=161 Identities=19% Similarity=0.201 Sum_probs=105.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
+.+.|+|+|.|||||||||++|++...++.. ....|.+........+.|..+.+.||-||.+ .-...+...|...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAFQATL 252 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHHHHHH
Confidence 4489999999999999999999987764433 2344555555555565788999999999986 22233444444444
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCC---ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKK---ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~---~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.. ...+|+++-|+|++++.-...+ ..+..+.. .|-. ...+++=|-||+|..+. . ...
T Consensus 253 ee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~--~-----~e~---------- 313 (410)
T KOG0410|consen 253 EE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED--E-----VEE---------- 313 (410)
T ss_pred HH-HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc--c-----Ccc----------
Confidence 32 3457999999999988766654 44445554 3331 12246667777775433 1 110
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+. ++...+|+.++.|.+++++.+...+.
T Consensus 314 E~--------n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 EK--------NLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cc--------CCccccccccCccHHHHHHHHHHHhh
Confidence 00 01123688999999999999887654
No 283
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-11 Score=117.42 Aligned_cols=120 Identities=21% Similarity=0.233 Sum_probs=92.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC----------------CCCcceeEEEEEEEeeCC-ceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG----------------SSGVTKTCEMQRTMLKAG-QVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~----------------~~~~T~~~~~~~~~~~~~-~~l~liDTPG 79 (311)
.....+|+++||..+|||||..+|+-.....+..+ ..|.|.......+.| .+ ..++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 45679999999999999999999865443222110 146888888889999 75 9999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+.|+. ..+..+++-+|+++.|+|+...........++...+.. .|.++++||+|.+..
T Consensus 86 HVDFt-----------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDFT-----------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYG-----VPRILFVNKMDRLGA 143 (697)
T ss_pred ccccH-----------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcC-----CCeEEEEECcccccc
Confidence 99953 22233345569999999999888888888887777632 489999999998755
No 284
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.32 E-value=1.8e-10 Score=95.30 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=69.8
Q ss_pred eEEEEeCCCCCCC---CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH--HHHHHHHHhCCCccCeEEEEE
Q 021534 71 VVNVIDTPGLFDS---SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA--AIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 71 ~l~liDTPG~~~~---~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+||||||-... +.+..-|.+ .+.. ..+.+++||+|.. |-+..... .+-..+.+.-+ ...|+|+|+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte----~las--s~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyk-tklp~ivvf 188 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITE----TLAS--SFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYK-TKLPFIVVF 188 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHh----hHhh--cCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHh-ccCCeEEEE
Confidence 5889999996431 222222222 2222 2468999999976 32222211 11111221111 234999999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEE------------Eec---CCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV------------LFD---NKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~f~---~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
||+|..+. ....+|+... ..++..+......|+ .|. ....+|+.+|.|.++++..|.+.+.
T Consensus 189 NK~Dv~d~--~fa~eWm~Df--E~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 189 NKTDVSDS--EFALEWMTDF--EAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred eccccccc--HHHHHHHHHH--HHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 99998877 5555555541 112222221111100 011 1133678888999999999988876
Q ss_pred H
Q 021534 211 Q 211 (311)
Q Consensus 211 ~ 211 (311)
+
T Consensus 265 E 265 (366)
T KOG1532|consen 265 E 265 (366)
T ss_pred H
Confidence 5
No 285
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2e-11 Score=107.49 Aligned_cols=159 Identities=21% Similarity=0.328 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccc-cccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAF-MSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.|+.+|+--.|||||+.+++|...- .......|.|.+..++.... .+..+.+||+||+.+ +.+.+-.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 5788999999999999999987531 11223468999999999988 677999999999765 4444444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
....+|..++|+++++++.....+.+..|. ++|. ++.++|+||+|..+. ..+++...+ +.........+
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi---~~giivltk~D~~d~--~r~e~~i~~-----Il~~l~l~~~~ 138 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGI---KNGIIVLTKADRVDE--ARIEQKIKQ-----ILADLSLANAK 138 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCC---CceEEEEeccccccH--HHHHHHHHH-----HHhhccccccc
Confidence 567889999999998888888877776555 4554 578999999998876 555544443 22211111222
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+ ..+|+.+++|+++|.+.|.++.
T Consensus 139 i------~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 139 I------FKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred c------cccccccCCCHHHHHHHHHHhh
Confidence 2 3478889999999999999887
No 286
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.32 E-value=3.3e-10 Score=94.73 Aligned_cols=129 Identities=16% Similarity=0.010 Sum_probs=81.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-ccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK-KAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~-~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+...|+|+|++++|||||+|.|+|. +.|..+....++|..+-.+...+. .+..+.++||||+++...........+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 35578999999999999999999998 356666666778887776665542 257899999999998765431111112
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH-----------hCCCccCeEEEEEeccCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL-----------FGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~ilv~nk~D~~ 151 (311)
..... --++++||.++.. .. ..+...+..+.+. ........+++|+--++..
T Consensus 85 ~~l~~---llss~~i~n~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 85 FALAT---LLSSVLIYNSWET-IL-GDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred HHHHH---HHhCEEEEeccCc-cc-HHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 22111 1348999998875 22 2333333333331 1122333577777766653
No 287
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.31 E-value=7.4e-12 Score=113.18 Aligned_cols=173 Identities=15% Similarity=0.218 Sum_probs=113.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...||+++|..|+||||||=+|+.....+..+. .+..+......+ ......|+||+.-.+ ...+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP----e~vpt~ivD~ss~~~-----------~~~~ 72 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP----ENVPTSIVDTSSDSD-----------DRLC 72 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc----CcCceEEEecccccc-----------hhHH
Confidence 459999999999999999999998875333222 123333322221 445689999984222 1112
Q ss_pred HHhccCCccEEEEEEECCCC--CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNR--FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+...++++|+|++|...++. +......||-.++..+|+....|+|+|.||+|.......+++.. +..++.
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~ 144 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMI 144 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHH
Confidence 22335567999999987743 44445788999999999888889999999999886632322220 111221
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCc
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYT 218 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~ 218 (311)
.+.....|..+||++..++.+++-.-.+.+-..-++.|.
T Consensus 145 ----~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyd 183 (625)
T KOG1707|consen 145 ----AFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYD 183 (625)
T ss_pred ----HhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence 222345556689999999999988877765544555554
No 288
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=6.5e-12 Score=110.98 Aligned_cols=169 Identities=23% Similarity=0.291 Sum_probs=110.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-------------cCCCCCcceeEEEEEEEee----CCceEEEEeCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS-------------KAGSSGVTKTCEMQRTMLK----AGQVVNVIDTP 78 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-------------~~~~~~~T~~~~~~~~~~~----~~~~l~liDTP 78 (311)
+.....+..++.|-..|||||..+|+....-.+ .....|.|...+...+.+. +...+++||||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 445668899999999999999999875432100 0112577887777766663 22489999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcH
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETL 158 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 158 (311)
|+.|+.- +..+. +.-+.+.|+|+|++.+.........-.. +.. .--++.|+||+|+...+-+.+
T Consensus 85 GHVDFsY-------EVSRS----LAACEGalLvVDAsQGveAQTlAN~YlA---le~--~LeIiPViNKIDLP~Adperv 148 (603)
T COG0481 85 GHVDFSY-------EVSRS----LAACEGALLVVDASQGVEAQTLANVYLA---LEN--NLEIIPVLNKIDLPAADPERV 148 (603)
T ss_pred CccceEE-------Eehhh----HhhCCCcEEEEECccchHHHHHHHHHHH---HHc--CcEEEEeeecccCCCCCHHHH
Confidence 9998642 12222 3345899999999977766554333222 222 136999999999765422332
Q ss_pred HHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 159 EDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
... +...+..-...... +||+++.|++++++.|.+.++...+
T Consensus 149 k~e--------Ie~~iGid~~dav~------~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 149 KQE--------IEDIIGIDASDAVL------VSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHH--------HHHHhCCCcchhee------EecccCCCHHHHHHHHHhhCCCCCC
Confidence 222 34444332222333 6999999999999999988876443
No 289
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.9e-11 Score=103.30 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=107.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc---------ccC---C-------------------CCCcceeEEEEEEEe
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM---------SKA---G-------------------SSGVTKTCEMQRTML 66 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~---------~~~---~-------------------~~~~T~~~~~~~~~~ 66 (311)
...++++-+|...-||||||-+|+..+... ..+ . ..|.|.++.+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999998754310 000 0 057899998887777
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.+.|.||||+. ++.+-+..-..-+|+.|+++|+...+-... .....+..++|- +++++.+|
T Consensus 84 -~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QT-rRHs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 84 -EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQT-RRHSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred -ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHh-HHHHHHHHHhCC---cEEEEEEe
Confidence 88999999999943 233222223345799999999986665544 334566677775 78999999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQV 198 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i 198 (311)
|+|+++-+.+..++.... +..+....+.....| .+.||+.+.|+
T Consensus 148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDNV 191 (431)
T COG2895 148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDNV 191 (431)
T ss_pred eecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCcc
Confidence 999997665677766665 566666666432211 22555555443
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.29 E-value=7.8e-11 Score=103.98 Aligned_cols=170 Identities=16% Similarity=0.229 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-ccc-----------cC--CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMS-----------KA--GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~-----------~~--~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
...+|+++.+...|||||+..|+.++. |.. .. -..|.|.-.....+.| ++..++||||||+-|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 347999999999999999999987653 111 00 1147788777778888 99999999999999976
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+.-+ +. +.-+|++++++|+.++.-+..+..++...+.. -+-|+|+||+|..... -++.+.+
T Consensus 83 GEVE-------Rv----l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~g-----L~PIVVvNKiDrp~Ar---p~~Vvd~ 143 (603)
T COG1217 83 GEVE-------RV----LSMVDGVLLLVDASEGPMPQTRFVLKKALALG-----LKPIVVINKIDRPDAR---PDEVVDE 143 (603)
T ss_pred chhh-------hh----hhhcceEEEEEEcccCCCCchhhhHHHHHHcC-----CCcEEEEeCCCCCCCC---HHHHHHH
Confidence 5422 22 33459999999999777777777666544421 2578899999976441 1122222
Q ss_pred cCCchHHHHHHhcC-------CcEEEecCCch----hhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 165 ECPKPLKEILQLCD-------NRCVLFDNKTK----DAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 165 ~~~~~~~~~~~~~~-------~~~~~f~~~~~----~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.-.++...+ .++.+-+.... .......++..|++.|.++++...
T Consensus 144 -----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 144 -----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred -----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 222333322 23322111111 111223568899999999887543
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.28 E-value=1.6e-11 Score=119.49 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEe--e-CCceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTML--K-AGQVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~--~-~~~~l~liDTPG 79 (311)
.+...+|+++|+.++|||||+++|+.......... ..+.|.......+.| . .+..++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34568999999999999999999975432111000 013344444333333 1 356789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.++ ......++..+|++|+|+|+.......+...+..+.+. + .|.++++||+|..
T Consensus 97 ~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL 152 (731)
T ss_pred ccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence 8873 22233345667999999999877777777777665442 2 3679999999976
No 292
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.26 E-value=4.9e-12 Score=92.72 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=103.4
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 25 LVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
++|.+++|||.|+-++-....+ .+.--..+.++.....+.. ++ ..+.+|||.| ++++++....++
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~-~~~kvklqiwdtag-----------qerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDM-DDKKVKLQIWDTAG-----------QERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceecc-CCcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence 6899999999987443222211 1110011122222222333 33 3789999999 566888888889
Q ss_pred CCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
+.+|+++++.|+.++.+-.. ..|+..+.++....+ .++++.||+|+..+ ..+. ..+=..+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e--r~v~-------~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE--RAVK-------RDDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh--hccc-------cchHHHHHHHHCCCc
Confidence 99999999999986666554 567777877654433 68999999998654 2221 112345666678777
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. +|++++-+++..+-.|.+-+.+
T Consensus 138 me------tsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 ME------TSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred ee------ccccccccHhHHHHHHHHHHHH
Confidence 76 8999999999888887765544
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.2e-11 Score=111.45 Aligned_cols=174 Identities=18% Similarity=0.202 Sum_probs=113.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLF 81 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~ 81 (311)
..+.++++|+..+|||-|+..|.+.++ ......|.|..+....+... .-..+.+|||||+.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNV--qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNV--QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccc--ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 347799999999999999999998876 33333455544433332210 12378999999966
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC----hhc
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN----DET 157 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~----~~~ 157 (311)
+ |...-+.....||.+|+|+|+.|++.+.....+++|+... .|+||++||+|.+... ...
T Consensus 552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhcccccCCCch
Confidence 5 3333333455689999999999999999999999988643 4899999999987431 122
Q ss_pred HHHHhhhc-------CCchHHHHHHhc---CCc-EEEecCC--------chhhhhhHHHHHHHHHHHHHHHH
Q 021534 158 LEDYLGRE-------CPKPLKEILQLC---DNR-CVLFDNK--------TKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 158 ~~~~~~~~-------~~~~~~~~~~~~---~~~-~~~f~~~--------~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.+.+... +...+..++-.+ |-. -.+|.|. .++||.++.|+.+|+-+|.++..
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 22222211 111123332222 211 1123332 56899999999999999988764
No 294
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=7.3e-11 Score=106.95 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~ 65 (311)
++....++++|+|+..+|||||+..|+..-..+. .....|+|..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 4555789999999999999999998864321000 01115788888888887
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-CCCC------hhHHHHHHHHHHHhCCCcc
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-NRFS------KEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-~~~~------~~~~~~l~~l~~~~~~~~~ 138 (311)
. ....++|+|+||+.|+. .-+......+|+.++|+|++ ..++ +..++....++. +|.
T Consensus 252 s-~~~~~tliDaPGhkdFi-----------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi--- 315 (603)
T KOG0458|consen 252 S-KSKIVTLIDAPGHKDFI-----------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI--- 315 (603)
T ss_pred c-CceeEEEecCCCccccc-----------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---
Confidence 6 78899999999988752 11222345679999999987 2222 233555555554 553
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-HhcC
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCD 178 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 178 (311)
..+||++||+|.+.-....+++.... +...+ +.||
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 58999999999997766777766665 55555 5555
No 295
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.23 E-value=2.5e-11 Score=96.01 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+|+++|.||+|||||+|+|.+.....++. .+++|+...... .+..+.|+||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 45789999999999999999999987644433 456666654433 3456899999995
No 296
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.3e-11 Score=91.77 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
...+|+++|--|+||||++-.+--..+. . .-+|.......+.+ .+.++.+||..|-.+ ++..|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-t----tkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-T----TKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-c----cCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 6689999999999999987655322221 1 11233333444555 778899999998554 66667
Q ss_pred HhccCCccEEEEEEECC--CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 99 GMAKDGIHAVLLVFSIR--NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
..++...|++|||+|.+ ++++..-..+..+|++---.+ ..++++.||.|.... ....+..... .+.++-.+
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~L---~l~~Lk~r 152 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKML---GLQKLKDR 152 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHHh---ChHHHhhh
Confidence 77788999999999987 345544455555555322111 268888999997655 3433333321 12233222
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
. ..++ ..||.++.|+++.++|+.+.+..
T Consensus 153 ~-~~Iv------~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 153 I-WQIV------KTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred e-eEEE------eeccccccCCcHHHHHHHHHHhc
Confidence 1 1222 36888899999999999887643
No 297
>PTZ00099 rab6; Provisional
Probab=99.22 E-value=3.1e-10 Score=91.34 Aligned_cols=114 Identities=19% Similarity=0.096 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.||||||.. .+...+..++.++|++|+|+|++++.+-.+ ..++..+....+. ..|+++|.||+
T Consensus 29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence 478999999943 344455566889999999999985433222 3455555444433 35899999999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
|+.........+ ...+....+..++. +||.++.|+.+++++|.+.+++
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~e------~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFHE------TSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 976431011111 22333334444443 7889999999999999988865
No 298
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.22 E-value=7.1e-11 Score=94.56 Aligned_cols=163 Identities=19% Similarity=0.124 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee-EEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT-CEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~-~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..+++|||..++|||+|+-..+.. .|+....+ |.. --...+...++. .+.+|||.|-.|- ..++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~yvP---TVFdnys~~v~V~dg~~v~L~LwDTAGqedY--------DrlR- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEYVP---TVFDNYSANVTVDDGKPVELGLWDTAGQEDY--------DRLR- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccccC---eEEccceEEEEecCCCEEEEeeeecCCCccc--------cccc-
Confidence 489999999999999999777644 34444332 222 111122331143 6889999996653 1122
Q ss_pred HHHhccCCccEEEEEEECCCCCChh--HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~~ 169 (311)
..+++.+|+||.++++.++.+-. ...++-.++.+++. .|+|+|.+|.|+.++ ....+.+... ....
T Consensus 71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence 34799999999999988554444 35667777777743 699999999998754 3222222211 1223
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
...+....|. .|+. .|+.+..|+.+.++.....
T Consensus 144 g~~lA~~iga~~y~E------cSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 144 GLELAKEIGAVKYLE------CSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HHHHHHHhCcceeee------ehhhhhCCcHHHHHHHHHH
Confidence 4455566563 3333 7888888888888765543
No 299
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=8.6e-10 Score=81.80 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=95.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++-.++|.-|+|||.|+..++....... -+....++....-++. .|+ .+.||||.| +++++..
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad--cphtigvefgtriiev-sgqkiklqiwdtag-----------qerfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-SGQKIKLQIWDTAG-----------QERFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc--CCcccceecceeEEEe-cCcEEEEEEeeccc-----------HHHHHHH
Confidence 47888999999999999999987765322 1222222233333444 343 789999999 5667777
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...+++++.+.+.|.|++.+.+-+. ..|+.-.+.+..+ ..-++++.||.|+-...+-..++ .+...+.
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnp--nt~i~lignkadle~qrdv~yee---------ak~faee 145 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLESQRDVTYEE---------AKEFAEE 145 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCC--ceEEEEecchhhhhhcccCcHHH---------HHHHHhh
Confidence 7888999999999999985544333 3344444444332 22477889999965331122221 2333444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
.|--+.. .|+++++++++.+-
T Consensus 146 ngl~fle------~saktg~nvedafl 166 (215)
T KOG0097|consen 146 NGLMFLE------ASAKTGQNVEDAFL 166 (215)
T ss_pred cCeEEEE------ecccccCcHHHHHH
Confidence 3433333 57788888876553
No 300
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.21 E-value=3.5e-11 Score=96.16 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=45.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+|+|+|.||+|||||||+|+|.....++ ..+|+|...+...+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEe----CCCEEEEECcCC
Confidence 4579999999999999999999998765443 34677777665543 356899999995
No 301
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.20 E-value=2.9e-10 Score=112.38 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=77.0
Q ss_pred cHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 32 GKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 32 GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+||||+.+|.+.++ ......|.|.+...+.+.+... ..+.||||||+.+ +
T Consensus 473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F 539 (1049)
T ss_pred ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence 39999999999887 4444568888888877766211 1389999999544 3
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.......+..+|++++|+|+++.+...+...+..+... ..|+++|+||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 32233346778999999999877888888877776653 248999999999864
No 302
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=7.8e-10 Score=96.21 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-----------------CceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----------------GQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~l~liDTPG~~~~ 83 (311)
++++++|.||+|||||+|+++.... ...+.|.+|.+.....+.... .-.+.++|.+|+.-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 7899999999999999999998874 445667788877766544321 116889999998754
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.-..+.+.+.+-+- ++.+|+|+.|+|..
T Consensus 81 As~GeGLGNkFL~~----IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDN----IREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHh----hhhcCeEEEEEEec
Confidence 33334445555443 45679999999875
No 303
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.8e-10 Score=94.22 Aligned_cols=173 Identities=19% Similarity=0.254 Sum_probs=111.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc---------ccccC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA---------FMSKA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~---------~~~~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+..+|+.+|+.+.|||||-.+|+..-. |.... -..|.|.......++. ..+.+..||+||+-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 45669999999999999999999865311 11111 1146777776666666 788999999999654
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL 162 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 162 (311)
++.+.|... ...|+.|+|+.+.+..-+..++-+-+.+. .|- ..+++++||+|++++ ..+-+.+
T Consensus 88 ------YvKNMItgA-----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 ------YVKNMITGA-----AQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred ------HHHHHhhhH-----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHHH
Confidence 233333332 24599999999886766666655544443 443 368888999999987 6666666
Q ss_pred hhcCCchHHHHHHhcCCc--EEEecCCch-----hhhhhHHHHHHHHHHHHHHHHH
Q 021534 163 GRECPKPLKEILQLCDNR--CVLFDNKTK-----DAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~--~~~f~~~~~-----~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. .+++++...+.+ ..++-.... ........+.+|++.+..+++.
T Consensus 151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 65 367788776533 111111111 1112345578888888877653
No 304
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.3e-08 Score=87.79 Aligned_cols=130 Identities=17% Similarity=0.317 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEE------------Eee------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRT------------MLK------------------ 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~------------~~~------------------ 67 (311)
...+-|+++|.-+.|||||||.|+..+......++.++|........ ...
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 35688999999999999999999988753222223233322221110 000
Q ss_pred ------CC---ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCC
Q 021534 68 ------AG---QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKK 136 (311)
Q Consensus 68 ------~~---~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~ 136 (311)
.+ ..++||||||+.+.....-.-.-.+...+..+..++|.|++++|+. .+.-++ ..++..| .|.+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi~aL---kG~E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVIDAL---KGHE 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHHHHh---hCCc
Confidence 00 1689999999987432211111124444445577889999999986 544333 4444444 4443
Q ss_pred ccCeEEEEEeccCCCCC
Q 021534 137 ISDYMIVVFTGGDELED 153 (311)
Q Consensus 137 ~~~~~ilv~nk~D~~~~ 153 (311)
..+=+|+||.|.++.
T Consensus 212 --dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 --DKIRVVLNKADQVDT 226 (532)
T ss_pred --ceeEEEeccccccCH
Confidence 368899999999977
No 305
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.3e-10 Score=95.04 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=101.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCCcceeEEEEEE--------------------Ee-----eCCce
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-SKAGSSGVTKTCEMQRT--------------------ML-----KAGQV 71 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-~~~~~~~~T~~~~~~~~--------------------~~-----~~~~~ 71 (311)
....+|+++|+...|||||..+|+|--... +.....+.|....+... .. .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 346999999999999999999999853210 00111122222222111 00 01247
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 72 VNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 72 l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+.|||.||+. -+...+-+-..--|+.|+|+.++++ ..+...+-|-.| +..|- +++++|-||+|+
T Consensus 88 VSfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhcc---ceEEEEecccce
Confidence 8999999943 2222222222335999999999843 333344333332 33443 689999999999
Q ss_pred CCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 151 LEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+... ..++.|.+ +++.++-. +.++++ .||..+.|++.|++.|.+.++.
T Consensus 153 V~~E-~AlE~y~q------Ik~FvkGt~Ae~aPIIP------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 153 VSRE-RALENYEQ------IKEFVKGTVAENAPIIP------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ecHH-HHHHHHHH------HHHHhcccccCCCceee------ehhhhccCHHHHHHHHHHhCCC
Confidence 8661 33444433 34444321 345665 8999999999999999998764
No 306
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.9e-10 Score=93.66 Aligned_cols=164 Identities=20% Similarity=0.273 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC--Cc-ccccc--CCCCCcceeEEEEEEEeeCC--------ceEEEEeCCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG--KK-AFMSK--AGSSGVTKTCEMQRTMLKAG--------QVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g--~~-~~~~~--~~~~~~T~~~~~~~~~~~~~--------~~l~liDTPG~~~~~~~ 86 (311)
+++|+++|+..+|||||..+|.. .+ .|... +...+.|.+.....+....+ ..+++||+||..+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 49999999999999999999843 22 12111 11235566655555443222 2669999999543
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC--hhcHHHHhhh
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN--DETLEDYLGR 164 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~--~~~~~~~~~~ 164 (311)
+.+.+.....-+|..++|+|+..+......+.|-.-...| ++.++|+||+|.+.+. ...+++....
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-----~klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-----KKLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc-----cceEEEEeccccccchhhhhHHHHHHHH
Confidence 3333333344579999999998666666655554333333 4799999999988661 1223322222
Q ss_pred cCCchHHHHHHhcC----CcEEEecCCchhhhhhH----HHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCD----NRCVLFDNKTKDAAKRT----EQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~----~~~~~f~~~~~~sa~~~----~~i~~l~~~i~~~~~ 210 (311)
+++-++..+ .+++. .|+..+ ..+.+|.+.+...+-
T Consensus 151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhc
Confidence 333333322 33443 455555 788888888886553
No 307
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.14 E-value=2.8e-10 Score=94.40 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=84.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC---hHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD---PEFVS 91 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~---~~~~~ 91 (311)
|....+.++++|.+|+|||||||.++......- ..+..+.|.....+. -+..+++||.||++.+... ..+..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~ 207 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWD 207 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHh
Confidence 456779999999999999999999988764322 222456666666555 4678999999996543211 11222
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.-...++... ...-.+++++|++-++...|...+.++.+. ..|+.+|+||+|...+
T Consensus 208 ~~t~~Y~leR-~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 208 KFTKSYLLER-ENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKK 263 (320)
T ss_pred HhHHHHHHhh-hhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhh
Confidence 2111222111 233456666788778888888888877763 2489999999997644
No 308
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.12 E-value=3.5e-10 Score=98.25 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
...++|+|+|.||+|||||||+|+|.....+ ...+|+|...+... .+..+.||||||+..+...+++
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIK----LGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEE----eCCcEEEEECCCcCCCCCCcHH
Confidence 3568999999999999999999999876444 33567787765433 3456899999999877654443
No 309
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=4.9e-10 Score=89.42 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=71.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
...|+++|.++||||+|+-.|.......+. +........+.+ +...+++||.||+.. .+..+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~-gs~~~~LVD~PGH~r-----------lR~kl~ 100 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRL-GSENVTLVDLPGHSR-----------LRRKLL 100 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEee-cCcceEEEeCCCcHH-----------HHHHHH
Confidence 368999999999999999877654321111 111222223333 555689999999653 444444
Q ss_pred hccC---CccEEEEEEECCCCCChhHHHH----HHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKD---GIHAVLLVFSIRNRFSKEEGAA----IHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~---~~d~il~v~d~~~~~~~~~~~~----l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+++ .+-+|+||+|.. -+..+-+.. ...+....+..-..|++++.||.|+...
T Consensus 101 e~~~~~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HHccccccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 4444 688999999986 333333333 3333332222223489999999998754
No 310
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.11 E-value=2.2e-10 Score=88.84 Aligned_cols=60 Identities=32% Similarity=0.460 Sum_probs=43.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
..+..+++++|.+|+|||||+|+|++.... .....++.|....... + + ..+.||||||+.
T Consensus 80 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~--~-~-~~~~i~DtpG~~ 139 (141)
T cd01857 80 LKENATIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIF--L-T-PTITLCDCPGLV 139 (141)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEE--e-C-CCEEEEECCCcC
Confidence 334458999999999999999999998754 3333456666654433 3 2 368999999975
No 311
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.10 E-value=1.4e-10 Score=94.72 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
..+++++|.+|+|||||||+|++..... .....+++|.......+ +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865322 22334567777665554 225899999996
No 312
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.10 E-value=5.8e-11 Score=92.66 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..++|+|++|||||||||+|++...+.++.. ...+|+....+.+ .....|||||||.++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--G
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCcccc
Confidence 7899999999999999999999855433221 1234555554443 33467999999877643
No 313
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.08 E-value=2.9e-10 Score=89.73 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=44.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
....+|+++|.||+|||||+|+|++....... ..+++|....... .+..+.|+||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK----LDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE----ecCCEEEEECCCC
Confidence 35688999999999999999999998754432 2356676665543 2356999999996
No 314
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.04 E-value=1e-09 Score=94.82 Aligned_cols=65 Identities=28% Similarity=0.378 Sum_probs=48.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~ 87 (311)
...++++|+|.||+|||||+|+|++.....+ ...+++|...+...+ +..+.||||||+..+...+
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKL----SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEe----CCCEEEEECCCcccCCCCc
Confidence 3458999999999999999999999875444 334677776654332 3468999999997654433
No 315
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.8e-09 Score=93.70 Aligned_cols=118 Identities=18% Similarity=0.225 Sum_probs=83.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh--CCccccc------------cCCC------CCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSIL--GKKAFMS------------KAGS------SGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~--g~~~~~~------------~~~~------~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
...+.+++-+|.+|||||-..|+ |...-.. .+.| .|..+...+-.+.+ .+..++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 34789999999999999987764 2221100 0011 34555666667777 89999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|++.+ . +..+.-+|+.+.|+|+..++.+...++++. +++.+ .|++-.+||+|....
T Consensus 90 GHeDFSED-------T----YRtLtAvDsAvMVIDaAKGiE~qT~KLfeV-crlR~----iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSED-------T----YRTLTAVDSAVMVIDAAKGIEPQTLKLFEV-CRLRD----IPIFTFINKLDREGR 148 (528)
T ss_pred Cccccchh-------H----HHHHHhhheeeEEEecccCccHHHHHHHHH-HhhcC----CceEEEeeccccccC
Confidence 99997532 1 112334599999999988898888777653 44444 499999999997654
No 316
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.02 E-value=4e-09 Score=94.96 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=92.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC---------------------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS--------------------------------------------- 52 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~--------------------------------------------- 52 (311)
+.-++|+|+|...+||||.+..+.....||.+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 34589999999999999999999888887765543
Q ss_pred -------CCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh
Q 021534 53 -------SGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK 120 (311)
Q Consensus 53 -------~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~ 120 (311)
.|+|+......... .|. +.++||.||+.++.. ...+.-+.|.+....+..++++||+|+.-+ .. .
T Consensus 386 RMr~sVr~GkTVSnEvIsltV-KGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SV-D 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNV-KGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SV-D 462 (980)
T ss_pred HHHhcccCCcccccceEEEee-cCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Cc-c
Confidence 45666666665555 443 778999999987642 223455667777777889999999999533 22 2
Q ss_pred hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 121 EEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 121 ~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++.++--|-..+.+ .++..|+|+||.|+.+.
T Consensus 463 AERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhhHHHHHHhcCC-CCCeeEEEEeecchhhh
Confidence 233333333333433 44689999999998755
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.02 E-value=2.3e-08 Score=87.42 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=59.1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||...... .+ ...+|.++++.+.. ...+..... ..+. ..|.++|+||+
T Consensus 126 g~D~viidT~G~~~~e~-------~i-------~~~aD~i~vv~~~~---~~~el~~~~--~~l~----~~~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------DI-------ANMADTFVVVTIPG---TGDDLQGIK--AGLM----EIADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhhh-------HH-------HHhhceEEEEecCC---ccHHHHHHH--HHHh----hhccEEEEEcc
Confidence 56889999999764210 11 23358888885432 222322211 1122 24789999999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
|.... ......... ....+..+... +..++++ +|+.++.|+++|+++|.+...
T Consensus 183 Dl~~~--~~~~~~~~~-~~~~l~~l~~~~~~~~~~v~~------iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 183 DGEGA--TNVTIARLM-LALALEEIRRREDGWRPPVLT------TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cccch--hHHHHHHHH-HHHHHhhccccccCCCCCEEE------EEccCCCCHHHHHHHHHHHHH
Confidence 98755 221110000 00001111111 1223333 788899999999999988753
No 318
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.01 E-value=1.2e-09 Score=87.73 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=44.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
+..++++++|.+|+|||||+|+|++.... .....+++|.......+ . ..+.||||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~---~-~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI---S-PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe---c-CCEEEEECCCCC
Confidence 34579999999999999999999997753 22334567766665543 2 568999999973
No 319
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=1e-09 Score=88.59 Aligned_cols=127 Identities=19% Similarity=0.282 Sum_probs=81.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|.+|+||||+=..++... ........|.|.++...++.+.++--+.+||..|-. ..+...+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcch
Confidence 4789999999999999654444222 112334578899998888877455689999998832 122233332333
Q ss_pred hccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..+++++||+|+..+--..|. ..-+-|+.++.......++++++|+|++..
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 456789999999999833222232 222223333333333579999999999855
No 320
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=4.6e-09 Score=80.37 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
++.-+++++|--|+|||||++.|-....-...+ |-+.......+ .+-+++.+|..|. ..-+..
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP-----TlHPTSE~l~I-g~m~ftt~DLGGH-----------~qArr~ 80 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELSI-GGMTFTTFDLGGH-----------LQARRV 80 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCC-----CcCCChHHhee-cCceEEEEccccH-----------HHHHHH
Confidence 355789999999999999999986654311111 22222223444 6778899999993 334556
Q ss_pred HHhccCCccEEEEEEECC--CCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIR--NRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~--~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+..+++.+|+++|++|+- +++.+.- .+.+-.+..+ +..|++++.||+|....
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~l----a~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESL----ATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHH----hcCcceeecccccCCCc
Confidence 677788999999999986 4444332 2222222222 23599999999997765
No 321
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.98 E-value=4.9e-09 Score=85.79 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.-+|+++|-|++|||||+..++.... ...+...+|..+.-..+.+ ++-.+.++|.||+.........-. +.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRG----RQ 132 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRG----RQ 132 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCC----ce
Confidence 3568999999999999999999997654 3334456777777777777 999999999999876321111111 11
Q ss_pred HHhccCCccEEEEEEECC
Q 021534 98 IGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~ 115 (311)
+-...+-+|+|+.|+|++
T Consensus 133 viavArtaDlilMvLDat 150 (364)
T KOG1486|consen 133 VIAVARTADLILMVLDAT 150 (364)
T ss_pred EEEEeecccEEEEEecCC
Confidence 222345679999999997
No 322
>PRK12288 GTPase RsgA; Reviewed
Probab=98.98 E-value=1.8e-09 Score=95.71 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
.++|+|.||+|||||||+|++.....++..+. .+|+....+.+. + ...|+|||||.....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~---~-~~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP---H-GGDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec---C-CCEEEECCCCCcccC
Confidence 57999999999999999999987654443322 245555555542 2 235999999987654
No 323
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.98 E-value=1.4e-09 Score=97.36 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
.+|+++|.||+|||||||+|++... ....+..+++|.......+ +..+.|+||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 5899999999999999999998542 1233455677776654432 3457899999998642111111111111
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
.+ .....+..+.|.++..+.+.......++.+.. . ...+.+.+++.+.+
T Consensus 231 ~~-~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YI-TPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNI 279 (360)
T ss_pred hc-CCCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCcee
Confidence 11 11245788999998775555444444443331 1 12456666666654
No 324
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=2.3e-09 Score=94.34 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
...+++|+|.||+|||||||+|+|.....+ ...+|.|...+.... +..+.|+||||+.-...
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence 347899999999999999999999987433 345688888777664 34589999999876543
No 325
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.92 E-value=4.6e-09 Score=89.44 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
....+++|.+|+|||||+|+|.+.....++.. ...+|+....+.+. .+-.|+|||||.....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence 34778999999999999999998654333221 12456666666542 2235899999977543
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.91 E-value=1.3e-09 Score=91.67 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=31.6
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-hHHH--HHHHHHHHhCCCccCeEEEEEec
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-EEGA--AIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~--~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+.|+||||-..... .......+.+.+.. ...-+++|++|+. .++. ...- .+-.+.-+.. ...|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~--~~lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLR--LELPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHH--HTSEEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhh--CCCCEEEeeec
Confidence 689999999432100 00111122222211 3456899999987 4332 2211 1111111111 12499999999
Q ss_pred cCCCCC
Q 021534 148 GDELED 153 (311)
Q Consensus 148 ~D~~~~ 153 (311)
+|++..
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999873
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=3e-09 Score=94.29 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
.++|+|.||+|||||||+|++.....++..+. .+|+....+.+ .+. ..|+|||||..+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---PNG-GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---CCC-cEEEeCCCccccc
Confidence 58999999999999999999876544332221 25666654443 222 3799999987654
No 328
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3e-09 Score=92.81 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=87.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+..+..+|+++.+-.+||||.-.+|+.-..+.. .....|.|.......+.| .|.++.+|||||
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpg 111 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPG 111 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCC
Confidence 344678999999999999999888764322111 011156788888888899 999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..|+... +.++ ++-.|+++.|+|++.+........++...+ ...|.++.+||+|....
T Consensus 112 hvdf~le-------verc----lrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 112 HVDFRLE-------VERC----LRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLAA 169 (753)
T ss_pred cceEEEE-------HHHH----HHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhhh
Confidence 9997643 3333 334499999999987777666555554443 23488999999997644
No 329
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.8e-08 Score=91.20 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.++++.++|+|+||+||||||.+|...-.-..... ..+.|... ...++++++.+|. | ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChH--H--------HHHHH
Confidence 44567888999999999999999976432111111 12222211 1456899999993 2 23344
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+... -+|++|+++|++-++.-+..++|..+..+. ...++-|+|+.|+.... ..+...... ....++.-+-
T Consensus 129 DvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~HG----mPrvlgV~ThlDlfk~~-stLr~~KKr-lkhRfWtEiy 198 (1077)
T COG5192 129 DVAK----IADLVLLLIDGNFGFEMETMEFLNILISHG----MPRVLGVVTHLDLFKNP-STLRSIKKR-LKHRFWTEIY 198 (1077)
T ss_pred hHHH----hhheeEEEeccccCceehHHHHHHHHhhcC----CCceEEEEeecccccCh-HHHHHHHHH-HhhhHHHHHc
Confidence 4433 349999999998788877788887776532 23688899999987552 445444443 2223333332
Q ss_pred hcCCcEEEec
Q 021534 176 LCDNRCVLFD 185 (311)
Q Consensus 176 ~~~~~~~~f~ 185 (311)
. |..++.++
T Consensus 199 q-GaKlFyls 207 (1077)
T COG5192 199 Q-GAKLFYLS 207 (1077)
T ss_pred C-CceEEEec
Confidence 2 55655443
No 330
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.89 E-value=3.8e-07 Score=82.47 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-C-C-------cc--eeEEEEEEE--e-------------
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGS-S-G-------VT--KTCEMQRTM--L------------- 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~-~-~-------~T--~~~~~~~~~--~------------- 66 (311)
....|+++|.+|+||||++..|. |..+......+ . + .+ ..+..+... .
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35789999999999999999886 44332111111 0 0 00 001111100 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.||||||... .+.....++..... ...+|.+++|+|+..+ .......+.+.+.. .+.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~--~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAE--AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhh--hcCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence 0245889999999653 33445566665543 2357899999998633 22333444554433 3688899
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 247 TKlD~~ar 254 (429)
T TIGR01425 247 TKLDGHAK 254 (429)
T ss_pred ECccCCCC
Confidence 99997654
No 331
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.88 E-value=1.2e-07 Score=71.61 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCccee-EEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKT-CEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~-~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
-+|+|+|.-++|||+++..|+..+. ........|.+ +-...++...+ ..+.|.||.|+.+. ..++..
T Consensus 10 ~kVvVcG~k~VGKTaileQl~yg~~--~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eLpr----- 79 (198)
T KOG3883|consen 10 CKVVVCGMKSVGKTAILEQLLYGNH--VPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQELPR----- 79 (198)
T ss_pred eEEEEECCccccHHHHHHHHHhccC--CCCCccccchhhheeEeeecCCChhheEEEeecccccCc---hhhhhH-----
Confidence 7899999999999999988865543 11222223333 22333333222 27999999998762 222222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC---CccCeEEEEEeccCCCCC
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK---KISDYMIVVFTGGDELED 153 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~ 153 (311)
.++.-+|++++|.+..++ .....+..|++-... .-..|++++.||.|..++
T Consensus 80 --hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 80 --HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred --hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 234457999999987633 233344444433322 223489999999998755
No 332
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.88 E-value=3.6e-09 Score=94.83 Aligned_cols=62 Identities=31% Similarity=0.370 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
..+|++||.||+||||+||+|.|.... +.++++|.|.+++...+ ...+.|+|+||+.-++..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc----CCCceecCCCCccccCCC
Confidence 699999999999999999999999863 45567899999887764 456889999998866543
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.86 E-value=4.5e-09 Score=89.05 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=42.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
..++++|.||+|||||||+|++.....++..+ ..+|+....+.+ .+ ..|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccCC
Confidence 57899999999999999999987654333221 235666666554 22 37999999987543
No 334
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.85 E-value=8.4e-08 Score=98.11 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC-------CCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC----ChHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKA-------GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA----DPEF 89 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-------~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~----~~~~ 89 (311)
+-.+|+|++|+||||+|+.- |-.. +... ...+.|..|..+ -....++|||+|.+-+.. .+..
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHH
Confidence 56799999999999999875 4432 2211 112334444333 345567999999765432 2334
Q ss_pred HHHHHHHHHHhc--cCCccEEEEEEECCCCCC--h--------hHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 90 VSKEIVKCIGMA--KDGIHAVLLVFSIRNRFS--K--------EEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 90 ~~~~~~~~~~~~--~~~~d~il~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..+...+... ...+|+||+++|+.+-+. . .-+..+..+.+.+|.. -||.||+||+|++..
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC
Confidence 566677766554 356899999999873222 1 1234455666667754 499999999999855
No 335
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.85 E-value=6e-08 Score=85.43 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=58.3
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l 126 (311)
.|..+....+.+ ++..+.+||++|-.. .+..|..++.++++|+||+|.++- + ...-...+
T Consensus 147 ~T~Gi~~~~f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl 214 (317)
T cd00066 147 KTTGIVETKFTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL 214 (317)
T ss_pred ccCCeeEEEEEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH
Confidence 455566666666 788999999999432 445556678899999999998731 0 11123445
Q ss_pred HHHHHHhCCCc--cCeEEEEEeccCCCC
Q 021534 127 HILESLFGKKI--SDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~~--~~~~ilv~nk~D~~~ 152 (311)
..+..++.... ..|+++++||.|...
T Consensus 215 ~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 215 NLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred HHHHHHHhCccccCCCEEEEccChHHHH
Confidence 55565554432 359999999999763
No 336
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.1e-08 Score=92.32 Aligned_cols=119 Identities=21% Similarity=0.218 Sum_probs=77.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC---------------CCCcceeEEEEEEEee----CCceEEEEeC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG---------------SSGVTKTCEMQRTMLK----AGQVVNVIDT 77 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~---------------~~~~T~~~~~~~~~~~----~~~~l~liDT 77 (311)
..-..+|+++|+-++|||+|+..|.+.+....... ..+++....-..+... ..+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34568999999999999999999987653111000 0233333333333221 2247899999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
||+.++. .+.... +..+|++++|+|+.++..-+...+++..-+ -..|+++|+||+|.+
T Consensus 205 PGHVnF~-------DE~ta~----l~~sDgvVlvvDv~EGVmlntEr~ikhaiq-----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFS-------DETTAS----LRLSDGVVLVVDVAEGVMLNTERIIKHAIQ-----NRLPIVVVINKVDRL 262 (971)
T ss_pred CCcccch-------HHHHHH----hhhcceEEEEEEcccCceeeHHHHHHHHHh-----ccCcEEEEEehhHHH
Confidence 9998852 223333 445699999999987777666555543322 124899999999975
No 337
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.84 E-value=4.7e-08 Score=73.98 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=101.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
...-.++|+++|.+..|||||+-...|...-.......|.. +....+.. .+ -.+.|||..| .++
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN--~mdkt~~i-~~t~IsfSIwdlgG-----------~~~ 81 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVN--FMDKTVSI-RGTDISFSIWDLGG-----------QRE 81 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCcc--ceeeEEEe-cceEEEEEEEecCC-----------cHh
Confidence 34456899999999999999998887765311111112221 11122222 22 2578999998 356
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+...+..++.++-+|+|++|.+.+.+.+. +..+.++..|-.--.-=|+|.||.|..-.....+.+.+.. ..+.+
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~----qar~Y 155 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR----QARKY 155 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH----HHHHH
Confidence 77778888899999999999996666555 2334444333321112466899999863322333333332 24555
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+......++ +|+...-+++.++..+..-+
T Consensus 156 Ak~mnAsL~F------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 156 AKVMNASLFF------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence 5555666555 45555577888888766443
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.2e-08 Score=80.51 Aligned_cols=57 Identities=28% Similarity=0.441 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
...+++++|.+|+|||||+|++.+.....+. ...+.|...+... .+..+.||||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLVK----ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEEE----cCCCEEEEECcCC
Confidence 4578999999999999999999986643222 2345554443222 3447899999995
No 339
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=9.9e-09 Score=95.71 Aligned_cols=121 Identities=23% Similarity=0.320 Sum_probs=84.4
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCCcceeEEEEEEEeeCCceEEEEeCCC
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTPG 79 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~~l~liDTPG 79 (311)
+.++....+|.++.+...|||||..+|+-.+...+. ....|.|-......... .+..+++||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCC
Confidence 445667789999999999999999999876542211 11235555555555444 678999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+.|+. .++. .+..-+|+.+.++|+.++........++. .+-.. ...++|+||+|.+
T Consensus 82 hvdf~-------sevs----sas~l~d~alvlvdvvegv~~qt~~vlrq---~~~~~--~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFS-------SEVS----SASRLSDGALVLVDVVEGVCSQTYAVLRQ---AWIEG--LKPILVINKIDRL 137 (887)
T ss_pred ccchh-------hhhh----hhhhhcCCcEEEEeeccccchhHHHHHHH---HHHcc--CceEEEEehhhhH
Confidence 99853 2233 33445699999999988888777766652 22221 2689999999943
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.82 E-value=1.6e-08 Score=87.77 Aligned_cols=72 Identities=31% Similarity=0.372 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCCC---CChHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS---ADPEFVS 91 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~---~~~~~~~ 91 (311)
..++++|++|+|||||+|+|+|.....++... ..+|+....+.. .+ ...++||||+.+.. .+.+++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~---~~-~~~liDtPG~~~~~~~~~~~~~~~ 237 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPL---PG-GGLLIDTPGFREFGLLHIDPEELA 237 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEc---CC-CCEEEECCCCCccCCccCCHHHHH
Confidence 68999999999999999999997654333221 124554444433 21 23799999996533 3334444
Q ss_pred HHHHH
Q 021534 92 KEIVK 96 (311)
Q Consensus 92 ~~~~~ 96 (311)
..+..
T Consensus 238 ~~f~~ 242 (287)
T cd01854 238 HYFPE 242 (287)
T ss_pred HHhHH
Confidence 44433
No 341
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.81 E-value=2.3e-08 Score=85.45 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTP 78 (311)
+....+++|++||.||+|||||+|+|+.... ...+.+.+|.+.....+...+. -.++++|+.
T Consensus 15 gR~~~~lkiGIVGlPNvGKST~fnalT~~~a--~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIA 92 (391)
T KOG1491|consen 15 GRDGNNLKIGIVGLPNVGKSTFFNALTKSKA--GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIA 92 (391)
T ss_pred cCCCCcceeeEeeCCCCchHHHHHHHhcCCC--CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeec
Confidence 3344679999999999999999999999876 3456778888888777655221 168999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|+....-....+.+.+-+- ++.+|+++-|+++.
T Consensus 93 GLvkGAs~G~GLGN~FLs~----iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 93 GLVKGASAGEGLGNKFLSH----IRHVDAIFHVVRAF 125 (391)
T ss_pred ccccCcccCcCchHHHHHh----hhhccceeEEEEec
Confidence 9876443444455555443 45569999998764
No 342
>PRK13796 GTPase YqeH; Provisional
Probab=98.80 E-value=1e-08 Score=91.93 Aligned_cols=59 Identities=25% Similarity=0.304 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc----cccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK----AFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~----~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..++.|+|.||+|||||||+|++.. ........+|+|.......+ +....|+||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l----~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL----DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc----CCCcEEEECCCccc
Confidence 3589999999999999999998643 11223445677777655443 23357999999864
No 343
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.79 E-value=2.5e-08 Score=88.20 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG----------------QVVNVIDTPGLFDSS 84 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~----------------~~l~liDTPG~~~~~ 84 (311)
++++++|.||+|||||+|+|++...-+. ...+.+|.......+.+.+. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999999874122 23456667766666665332 268999999987532
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
.....+...+... ++.+|+++.|++..
T Consensus 82 s~g~Glgn~fL~~----ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLAN----IREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHH----HHhCCEEEEEEeCC
Confidence 2122223333333 45569999999874
No 344
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.79 E-value=2.2e-07 Score=82.51 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=58.9
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l 126 (311)
.|..+....+.+ ++..+.+||.+|-. ..+..|..++.++++||||+|.++- + ...-...+
T Consensus 170 ~T~Gi~~~~f~~-~~~~~~~~DvgGqr-----------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl 237 (342)
T smart00275 170 PTTGIQETAFIV-KKLFFRMFDVGGQR-----------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL 237 (342)
T ss_pred CccceEEEEEEE-CCeEEEEEecCCch-----------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH
Confidence 455555666666 78889999999932 2445566678899999999998831 0 11123455
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCC
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~ 152 (311)
..+..++... ...|++|++||.|...
T Consensus 238 ~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 238 NLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred HHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 5666666543 2359999999999763
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.78 E-value=2.8e-08 Score=86.80 Aligned_cols=60 Identities=27% Similarity=0.279 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
...++|+|++|+|||||+|+|+|.....++..+. .+|+....+.+ . ....|+||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~---~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL---P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc---C-CCcEEEECCCcCcc
Confidence 3578999999999999999999976543332211 24444444333 2 23479999998753
No 346
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.76 E-value=5e-08 Score=80.74 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+.+.|+|+|.+|+|||||++.++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999754
No 347
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.74 E-value=1.6e-07 Score=78.32 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=56.1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC--CCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR--NRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
|..+.||.|.|.+.. .-++ ..-+|.+++|+... +.+...-.-+++. .=++|+|
T Consensus 121 G~D~IiiETVGvGQs-------E~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-----------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS-------EVDI-------ADMADTVVLVLVPGLGDEIQAIKAGIMEI-----------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH-------HHHH-------HTTSSEEEEEEESSTCCCCCTB-TTHHHH------------SEEEEE
T ss_pred CCCEEEEeCCCCCcc-------HHHH-------HHhcCeEEEEecCCCccHHHHHhhhhhhh-----------ccEEEEe
Confidence 457899999998852 0112 23469999998654 4444333333332 2478999
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-------CcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLCD-------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
|.|.... .....+ +...+.... .+++. +||.++.|+++|.+.|.++.
T Consensus 176 KaD~~gA-~~~~~~---------l~~~l~l~~~~~~~W~ppV~~------tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 176 KADRPGA-DRTVRD---------LRSMLHLLREREDGWRPPVLK------TSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --SHHHH-HHHHHH---------HHHHHHHCSTSCTSB--EEEE------EBTTTTBSHHHHHHHHHHHH
T ss_pred CCChHHH-HHHHHH---------HHHHHhhccccccCCCCCEEE------EEeCCCCCHHHHHHHHHHHH
Confidence 9994322 111221 233333211 23333 67788899999999998765
No 348
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.5e-07 Score=80.41 Aligned_cols=172 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCc------c---ccccC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKK------A---FMSKA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~------~---~~~~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
...+..+|+-+|+...|||||--+|+.-- . |.... -..|.|...-...++. ..+.+.=+|+||+.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHA 128 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchH
Confidence 45678999999999999999988886421 1 11100 1135666655555555 67788899999965
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
|. +..++ .-...-|+.|+|+.+++..-+..++-|-+.++ .|- +++++.+||.|.+++ ...-+.
T Consensus 129 DY----------IKNMI-tGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leL 191 (449)
T KOG0460|consen 129 DY----------IKNMI-TGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLEL 191 (449)
T ss_pred HH----------HHHhh-cCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHH
Confidence 41 22222 22345699999999987776777666655554 444 589999999999976 555555
Q ss_pred hhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhH-------HHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRT-------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~-------~~i~~l~~~i~~~~~ 210 (311)
++. .+++++..+|. ....+..++ -+|+.+ ..+..|++.+...++
T Consensus 192 VEm----E~RElLse~gf~Gd~~PvI~GSA-L~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 192 VEM----EIRELLSEFGFDGDNTPVIRGSA-LCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHH----HHHHHHHHcCCCCCCCCeeecch-hhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 554 36777776542 222211111 122222 347777777777654
No 349
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.69 E-value=5.4e-08 Score=82.43 Aligned_cols=71 Identities=27% Similarity=0.314 Sum_probs=51.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE 88 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~ 88 (311)
.+...++.|+|.||+|||||||++..... .......+|+|..+....-.. ....+.++||||+..++..+.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-~rp~vy~iDTPGil~P~I~~~ 214 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-HRPPVYLIDTPGILVPSIVDV 214 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-cCCceEEecCCCcCCCCCCCH
Confidence 45679999999999999999999854332 222334578888876643333 677899999999987765443
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.68 E-value=1.8e-06 Score=75.82 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCC-----------cceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSG-----------VTKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~-----------~T~~~~~~~~~--------------- 65 (311)
.+...|+++|++|+||||++..|.+.- +......... .-..+.+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999998885531 1111110000 00001111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH---hc-cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG---MA-KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~---~~-~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
...+..+.||||||.... .....+++..... .. -..++.+++|+|++.+. .+..-...+.+.+ .+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhC-----CC
Confidence 013457999999997643 2333333443322 11 23578899999998322 2222122222222 35
Q ss_pred EEEEEeccCCCCC
Q 021534 141 MIVVFTGGDELED 153 (311)
Q Consensus 141 ~ilv~nk~D~~~~ 153 (311)
.-+|+||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7889999996644
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.68 E-value=1.2e-07 Score=77.54 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=55.9
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||... .+.....++..++... .++-+++|++++.. ..+...+....+.++ +--+++||.|
T Consensus 84 ~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEESTT
T ss_pred CCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEeec
Confidence 4689999999663 3444555566655444 57889999998733 233334444444443 3456799999
Q ss_pred CCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 150 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
....-+.. -.++...+.++..+.+..
T Consensus 152 et~~~G~~-------------l~~~~~~~~Pi~~it~Gq 177 (196)
T PF00448_consen 152 ETARLGAL-------------LSLAYESGLPISYITTGQ 177 (196)
T ss_dssp SSSTTHHH-------------HHHHHHHTSEEEEEESSS
T ss_pred CCCCcccc-------------eeHHHHhCCCeEEEECCC
Confidence 87553222 233344466666655543
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.67 E-value=9.8e-07 Score=75.87 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh----ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM----AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~----~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
.+..+.||||||.... +.....++...... ....+|.+++|+|++. ...+......+.+.+ ...-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4468899999997652 33344444443322 1234899999999972 233333333333333 25788
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999998655
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.7e-08 Score=90.81 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=91.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK----------------AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------------~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
.|-+...+|++..+-.+||||+-+.++........ ....+.|.......+.| .+.+++|||||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTP 112 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTP 112 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCC
Confidence 45568899999999999999999887654332110 11246777777778888 79999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|+...- ..+++-.|+.+.|+|+..+.........+.++++. .|.+..+||+|....
T Consensus 113 GHvDFT~EV-----------eRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~-----vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 113 GHVDFTFEV-----------ERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYN-----VPRICFINKMDRMGA 171 (721)
T ss_pred CceeEEEEe-----------hhhhhhccCeEEEEEcccceehhhHHHHHHHHhcC-----CCeEEEEehhhhcCC
Confidence 999975332 12244569999999987677777777777777643 489999999998866
No 354
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.59 E-value=4.7e-06 Score=76.88 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC--------cc-ccccCCCC-C---------cceeEEEEEE-----------Eee
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK--------KA-FMSKAGSS-G---------VTKTCEMQRT-----------MLK 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~--------~~-~~~~~~~~-~---------~T~~~~~~~~-----------~~~ 67 (311)
.....|+|+|++|+||||++..|... .+ +....... + ....+..... .+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 45689999999999999999888642 11 00100000 0 0000111110 01
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||.... +......+.. +.... ....++|++.+...... ..+++.+... .+.-+|+||
T Consensus 427 ~~~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~~------~~~gvILTK 493 (559)
T PRK12727 427 RDYKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAHA------KPQGVVLTK 493 (559)
T ss_pred ccCCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhHH-HHHHHHHHhh------CCeEEEEec
Confidence 3457899999997642 2222222321 21111 23567778876322211 2333433331 367899999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh-hhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-AAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|....-+.. ..++...+.++.++.+...+ ..........|+..+..+-..
T Consensus 494 lDEt~~lG~a-------------Lsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~ 545 (559)
T PRK12727 494 LDETGRFGSA-------------LSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRA 545 (559)
T ss_pred CcCccchhHH-------------HHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhh
Confidence 9976442222 23334446666666554433 123334456666666665443
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=3.4e-06 Score=74.35 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=44.0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... +.....++...... -.+|.+++|+|+..+ .........+.+..+ .--+++||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456999999997642 33444555444322 257899999998632 222233333333232 467889999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 98654
No 356
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.56 E-value=4.5e-07 Score=74.37 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=45.9
Q ss_pred ccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 105 IHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 105 ~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
+|.+|.|+|+.+...... ..... ...-=++++||+|+.+.....+...... ++.+ ..+.+++.
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~q--------i~~ad~~~~~k~d~~~~~~~~~~~~~~~-----~~~~--~~~~~i~~- 175 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPG--------ITRSDLLVINKIDLAPMVGADLGVMERD-----AKKM--RGEKPFIF- 175 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhH--------hhhccEEEEEhhhccccccccHHHHHHH-----HHHh--CCCCCEEE-
Confidence 477999999873222111 10011 1112378999999874211223322221 2222 12344544
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
+|+.++.|+++++++|.+.
T Consensus 176 -----~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 176 -----TNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred -----EECCCCCCHHHHHHHHHhh
Confidence 7889999999999999864
No 357
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.56 E-value=2.5e-07 Score=79.27 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=36.4
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
..-++|+||+|++......++.++.. ++.+.+ ..+++. .|+.++.|+++++++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence 35799999999885311334444332 222221 344555 688889999999999875
No 358
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-06 Score=76.69 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=60.7
Q ss_pred CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC---CCChh-----HHHH
Q 021534 54 GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN---RFSKE-----EGAA 125 (311)
Q Consensus 54 ~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~---~~~~~-----~~~~ 125 (311)
..|..+....+.+ .+..+.++|.+|- +.-+.-|..++.++++||||++.++ .+.+. -.+.
T Consensus 180 ~~T~GI~e~~F~~-k~~~f~~~DvGGQ-----------RseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS 247 (354)
T KOG0082|consen 180 VPTTGIVEVEFTI-KGLKFRMFDVGGQ-----------RSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHES 247 (354)
T ss_pred cCcCCeeEEEEEe-CCCceEEEeCCCc-----------HHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHH
Confidence 3577777777888 8899999999992 2233344557899999999998761 12111 1345
Q ss_pred HHHHHHHhCCCc--cCeEEEEEeccCCCCC
Q 021534 126 IHILESLFGKKI--SDYMIVVFTGGDELED 153 (311)
Q Consensus 126 l~~l~~~~~~~~--~~~~ilv~nk~D~~~~ 153 (311)
+.++...+.... ..++|+.+||.|+...
T Consensus 248 ~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 248 LKLFESICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHHHHHHhcCcccccCcEEEEeecHHHHHH
Confidence 566666665543 2479999999998744
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.54 E-value=1.1e-06 Score=78.23 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccC---------CC--------------CCcceeEEEEE-------EEeeC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKA---------GS--------------SGVTKTCEMQR-------TMLKA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---------~~--------------~~~T~~~~~~~-------~~~~~ 68 (311)
....++|+|++|+||||++..|.+......+. .. .+......... ..+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-R 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-c
Confidence 35689999999999999999986532110000 00 00000000000 111 3
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCc---cCeEEEEE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI---SDYMIVVF 145 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~ 145 (311)
+..+.||||||.... +..+.+.+... .. ...++-.++|++++...... ...+..+....+.+. ...--+|+
T Consensus 215 ~~DlVLIDTaG~~~~---d~~l~e~La~L-~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---DRTVSDQIAML-HG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred CCCEEEEcCCCCCcc---cHHHHHHHHHH-hc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEE
Confidence 568899999997642 23333433332 11 23345678899987333221 234444554432211 01346788
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 289 TKlDEt~~ 296 (374)
T PRK14722 289 TKLDEASN 296 (374)
T ss_pred eccccCCC
Confidence 99998755
No 360
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=1e-06 Score=79.65 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----------------------CCcceeEEEEE-------EEee
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----------------------SGVTKTCEMQR-------TMLK 67 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----------------------~~~T~~~~~~~-------~~~~ 67 (311)
+....|+|+|++|+||||++..|.+...+..+... .+......... ...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l- 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL- 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence 34579999999999999999988764211000000 00000000000 111
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.+|||+|.... +....+++.... . ...++-.++|+|++... .+ +..+...+.. ...--+++||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l~-~-~~~~~~~~LVl~at~~~--~~---~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAMLS-Q-CGTQVKHLLLLNATSSG--DT---LDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHHh-c-cCCCceEEEEEcCCCCH--HH---HHHHHHHhcC--CCCCEEEEEe
Confidence 3457899999997642 233444444332 1 22355678888887221 12 1222222322 2356778999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
.|....-+.. -.++...+.++.++.+..
T Consensus 336 lDEt~~~G~~-------------l~~~~~~~lPi~yvt~Gq 363 (420)
T PRK14721 336 VDEAASLGIA-------------LDAVIRRKLVLHYVTNGQ 363 (420)
T ss_pred eeCCCCccHH-------------HHHHHHhCCCEEEEECCC
Confidence 9987553222 333344466666655543
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=5.2e-07 Score=80.09 Aligned_cols=123 Identities=22% Similarity=0.191 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCC--CCc---------ceeEEEEEEE-----------ee--C
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AFMSKAGS--SGV---------TKTCEMQRTM-----------LK--A 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~--~~~---------T~~~~~~~~~-----------~~--~ 68 (311)
....|+|+|++|+||||++..|.+.- +......+ .+. ...+...... .. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999999986421 10000000 000 0000000000 00 1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||-.. .+.....++...+... .+|.+++|+|++... .....+++.+.. + ..--+++||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk~-~d~~~i~~~F~~-~-----~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMKS-KDMIEIITNFKD-I-----HIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccCh-HHHHHHHHHhcC-C-----CCCEEEEEcc
Confidence 34789999999654 2233344455554433 467889999876221 111334433332 1 3467789999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 97754
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.49 E-value=8.2e-07 Score=75.15 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=57.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHH-HHHHhCCCccCeEEEEEec
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHI-LESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 147 (311)
|..+.||.|-|.+... -.+. +-+|.+++|.-..- ..+.+.++. +-+ ++ =++|+||
T Consensus 143 G~DvIIVETVGvGQse-------v~I~-------~~aDt~~~v~~pg~---GD~~Q~iK~GimE-ia------Di~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSE-------VDIA-------NMADTFLVVMIPGA---GDDLQGIKAGIME-IA------DIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcch-------hHHh-------hhcceEEEEecCCC---CcHHHHHHhhhhh-hh------heeeEec
Confidence 4578899999988642 1232 23599999975431 122222221 111 22 3789999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHH---HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEI---LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.|.-.. .....++... +.-. ....+.+.. ...++|.+++|+++|.+.|.++..
T Consensus 199 aD~~~A-~~a~r~l~~a-----l~~~~~~~~~~~W~pp----v~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 199 ADRKGA-EKAARELRSA-----LDLLREVWRENGWRPP----VVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cChhhH-HHHHHHHHHH-----HHhhcccccccCCCCc----eeEeeeccCCCHHHHHHHHHHHHH
Confidence 993322 1222222111 1111 011111111 124788889999999999998764
No 363
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4.5e-06 Score=83.58 Aligned_cols=125 Identities=16% Similarity=0.229 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCC----CcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh----HHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSS----GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP----EFVS 91 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~----~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~----~~~~ 91 (311)
+--+|+|++|+||||++..- |... +....... ..|..| .|.-+..-++|||.|-+-+..+. ...+
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~c-----dwwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNC-----DWWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCccc-----CcccccceEEEcCCcceecccCcchhhHHHH
Confidence 44588999999999987542 3321 11111111 113433 34356677899999966544322 2333
Q ss_pred HHHHHHHHh--ccCCccEEEEEEECCCCCChhH--H--------HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 92 KEIVKCIGM--AKDGIHAVLLVFSIRNRFSKEE--G--------AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 92 ~~~~~~~~~--~~~~~d~il~v~d~~~~~~~~~--~--------~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+-.++.. ..+.+|+||+.+|+.+-++... . ..|+.|...++. .-||+|++||.|++..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEeccccccc
Confidence 444444433 3456899999999873332222 1 124445555554 3499999999999854
No 364
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.45 E-value=2.8e-06 Score=81.75 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccC---------CC--------------CCcceeEEEEE------E-EeeCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKA---------GS--------------SGVTKTCEMQR------T-MLKAG 69 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~---------~~--------------~~~T~~~~~~~------~-~~~~~ 69 (311)
...|+|+|++|+||||++..|.+......+. .. .+....+.... + .. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence 4688999999999999999987643211100 00 00000000000 0 11 34
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..++||||||.... +..+.+++..... ...++-+++|+|++.. ..+ ..+++.+....+. .+--+|+||.
T Consensus 264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKL 333 (767)
T PRK14723 264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKL 333 (767)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence 57899999996542 2334444443322 2346778899998722 122 2233333332111 2456789999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh-hhhhHHHHHHHHHHHHHH
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-AAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-sa~~~~~i~~l~~~i~~~ 208 (311)
|....-+.. -.++...+.++.++.+...+ ......+-+.+.+.+...
T Consensus 334 DEt~~~G~i-------------L~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~ 381 (767)
T PRK14723 334 DEATHLGPA-------------LDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFAT 381 (767)
T ss_pred CCCCCccHH-------------HHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhcc
Confidence 977543222 23334446666665554333 223334445666665543
No 365
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=8.9e-07 Score=69.55 Aligned_cols=117 Identities=20% Similarity=0.139 Sum_probs=74.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--C-ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--G-QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~-~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
..++++++|..|.||||++++.+-... .... ..|..+..+...... + -.+..|||.|-.-..+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeF--e~~y--~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg---------- 74 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEF--EKTY--PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG---------- 74 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccc--eecc--cCcceeEEeeeeeecccCcEEEEeeecccceeecc----------
Confidence 358999999999999999998765543 1111 223344444433322 2 3789999999543211
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.-..++=+..|.++++|+..+++-.. ..+.+-+...++. .|+++..||.|.-..
T Consensus 75 -lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 75 -LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR 129 (216)
T ss_pred -cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc
Confidence 11122334568899999986766554 3455556666654 599999999995543
No 366
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.42 E-value=1.9e-07 Score=81.58 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=50.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~ 86 (311)
...++++|+|-||+||||+||+|......+++. .+|.|...+... .+..|.|+|.||+.-...+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCCC
Confidence 456999999999999999999999988765554 467777665544 5678999999998765433
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.39 E-value=2.3e-06 Score=67.55 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998765
No 368
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.37 E-value=7.5e-06 Score=71.41 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-------------CCCcceeEEEEEEEeeC--------------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-------------SSGVTKTCEMQRTMLKA-------------- 68 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-------------~~~~T~~~~~~~~~~~~-------------- 68 (311)
..+..+.|+++|+.++|||||..+|+-... ..+.. ..|-|..+...-+-+.+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~-DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRL-DDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCC-CCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 345679999999999999999988743221 01110 02223333333222211
Q ss_pred --------CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 69 --------GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 69 --------~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
++-+.+|||-|+... +...+...+ -.++|-.++++-+++..+...++-|-.+..+ .-|
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpw------LrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lP 257 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPW------LRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELP 257 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHH------HHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCC
Confidence 245789999996531 122233332 3468999999988877776665555444332 149
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEec-------------------CCchhhhhhHHHHHHH
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD-------------------NKTKDAAKRTEQVGKL 201 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-------------------~~~~~sa~~~~~i~~l 201 (311)
+|+++||+|+.++ ..+...+++ +..+++..+.-.+... ....+|+-++.|++-|
T Consensus 258 viVvvTK~D~~~d--dr~~~v~~e-----i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 258 VIVVVTKIDMVPD--DRFQGVVEE-----ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred EEEEEEecccCcH--HHHHHHHHH-----HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 9999999999987 555555443 3333333221111110 0023566777888777
Q ss_pred HHHHHHH
Q 021534 202 LSLVNSV 208 (311)
Q Consensus 202 ~~~i~~~ 208 (311)
.+.+..+
T Consensus 331 ~e~f~~L 337 (527)
T COG5258 331 DEFFLLL 337 (527)
T ss_pred HHHHHhC
Confidence 7766544
No 369
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.35 E-value=3.1e-06 Score=77.27 Aligned_cols=72 Identities=19% Similarity=0.120 Sum_probs=43.4
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.||||||.... ++...+++..... ...+|.+++|+|++.. . ..+..++. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 47899999996642 3445555555433 2257899999998732 2 23333333 2221 124577899999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 7644
No 370
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.34 E-value=2.7e-07 Score=80.35 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=48.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA 85 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~ 85 (311)
+..+.+-|+++|.||+||||+||+|-...++.+.+. +|.|..-++.. .-++|.|||+||+..++.
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPI-pGETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPI-PGETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCC-CCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 345779999999999999999999998888554333 45555444333 346789999999877654
No 371
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=5.5e-06 Score=74.49 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCC--CC---------cceeEEEEEE----------EeeCCce
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFM-------SKAGS--SG---------VTKTCEMQRT----------MLKAGQV 71 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~~~~--~~---------~T~~~~~~~~----------~~~~~~~ 71 (311)
...|+|+|++|+||||++..|....... ....+ .+ ....+..... .- .+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D 301 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSE 301 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCC
Confidence 4578999999999999998886422100 00000 00 0000000000 00 3557
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 72 VNVIDTPGLFDSSADPEFVSKEIVKCIGMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 72 l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+.||||||+... +.....++...+.... ..++-.++|+|++.... .-...... +. ...+--+|+||.|.
T Consensus 302 ~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~----f~--~~~~~glIlTKLDE 371 (432)
T PRK12724 302 LILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKA----YE--SLNYRRILLTKLDE 371 (432)
T ss_pred EEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHH----hc--CCCCCEEEEEcccC
Confidence 899999997642 2223344444443321 22457888999872221 11222222 32 12356788999997
Q ss_pred CCC
Q 021534 151 LED 153 (311)
Q Consensus 151 ~~~ 153 (311)
...
T Consensus 372 t~~ 374 (432)
T PRK12724 372 ADF 374 (432)
T ss_pred CCC
Confidence 754
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=6.8e-06 Score=72.83 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cc-cccCCC-CCc---------ceeEEEEEEE-----------e--eC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AF-MSKAGS-SGV---------TKTCEMQRTM-----------L--KA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~-~~~~~~-~~~---------T~~~~~~~~~-----------~--~~ 68 (311)
+...|+++|++|+||||++..|...- +. ...... .+. ...+..+... . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998885321 10 000000 000 0000011000 0 02
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||... .+.....++...... ..+|.+++|++++ ....+ ....+.. +.. ...--+|+||.
T Consensus 285 ~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNY---LAEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCc---cCHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 45789999999754 234444445544332 2457777887764 22222 3333332 221 23567789999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCC
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 187 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (311)
|....-|.. -++....+.++.++.+.
T Consensus 353 DET~~~G~~-------------Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 353 DETTRIGDL-------------YTVMQETNLPVLYMTDG 378 (407)
T ss_pred cCCCCccHH-------------HHHHHHHCCCEEEEecC
Confidence 977542222 33344446666655443
No 373
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.33 E-value=6.6e-06 Score=73.01 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-C----------------------CcceeEEEEE-------EEeeC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-S----------------------GVTKTCEMQR-------TMLKA 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-~----------------------~~T~~~~~~~-------~~~~~ 68 (311)
+...|++||+||+||||.+-.|........+... . ++...+.... ..+ .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 4789999999999999999887654331111110 0 1111111110 011 4
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
++.+.||||.|... .+.....++...+..+ ...-+.+|++++.. ...+..+-+.|+. ...--+++||.
T Consensus 281 ~~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i~~~I~TKl 348 (407)
T COG1419 281 DCDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-----YEDLKEIIKQFSL--FPIDGLIFTKL 348 (407)
T ss_pred cCCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-----hHHHHHHHHHhcc--CCcceeEEEcc
Confidence 56899999999653 2333444555555443 22344556676622 1222233333433 12456779999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchh
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD 190 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 190 (311)
|....-|. +-.++...+-++.++.+...+
T Consensus 349 DET~s~G~-------------~~s~~~e~~~PV~YvT~GQ~V 377 (407)
T COG1419 349 DETTSLGN-------------LFSLMYETRLPVSYVTNGQRV 377 (407)
T ss_pred cccCchhH-------------HHHHHHHhCCCeEEEeCCCCC
Confidence 97754222 233444446666666555433
No 374
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.31 E-value=1.1e-05 Score=74.19 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|++|+||||++..|.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 368999999999999999998754
No 375
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=6.2e-06 Score=75.38 Aligned_cols=96 Identities=18% Similarity=0.147 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... +......+..++... ....-+++|++++... ..-..++..+. . ..+--+++||+
T Consensus 299 ~~DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~~-~~l~~~~~~f~----~--~~~~~vI~TKl 367 (424)
T PRK05703 299 DCDVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATTKY-EDLKDIYKHFS----R--LPLDGLIFTKL 367 (424)
T ss_pred CCCEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCCCH-HHHHHHHHHhC----C--CCCCEEEEecc
Confidence 457899999997542 222334455554422 2345667778876221 11122223322 2 11346889999
Q ss_pred CCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCc
Q 021534 149 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT 188 (311)
Q Consensus 149 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (311)
|....-+. +..++...+.++.++.+..
T Consensus 368 Det~~~G~-------------i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 368 DETSSLGS-------------ILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred cccccccH-------------HHHHHHHHCCCEEEEeCCC
Confidence 97644221 3334444566766665543
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=2e-06 Score=67.83 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=60.1
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++++|+|++.++...+..+.+.+.... ...|+++|+||+|+.++ ..+..++.. +....
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~---~~~p~ilVlNKiDl~~~--~~~~~~~~~---------~~~~~- 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEK---PHKHLIFVLNKCDLVPT--WVTARWVKI---------LSKEY- 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhcc---CCCCEEEEEEchhcCCH--HHHHHHHHH---------HhcCC-
Confidence 3466789999999998776666667777766421 22599999999998755 333333332 11111
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.. ...|+..+.++++|++.+.++.
T Consensus 69 ~~~~----~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIA----FHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEE----EEeeccccccHHHHHHHHHHHH
Confidence 1111 2367788889999999998765
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=98.25 E-value=2.7e-05 Score=70.99 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||.... ++....++...... -.++.+++|+|+.. ..........+.+.+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 357899999996532 33344444443332 25678899999752 122233333333322 2356788999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 251 D~~~r 255 (433)
T PRK10867 251 DGDAR 255 (433)
T ss_pred cCccc
Confidence 96543
No 378
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.24 E-value=8.5e-08 Score=74.91 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc---eEEEEeCCCCCCCCCChHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ---VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~---~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+..-.++.|+|.-|+||||++...+..+. +.+...............| ++. ++.|||..|- ++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQ-----------er 87 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQ-----------ER 87 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhh-----------hh
Confidence 34568899999999999999998876553 2111111112222222334 333 7789999993 34
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHH-H-hCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILES-L-FGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~-~-~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+..+...+++.+++...|+|++...+.+. ..+.+-+-. + ++.+.-.|++++-||+|.-.. ...+ . ...+
T Consensus 88 fg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~--a~~~-~-----~~~~ 159 (229)
T KOG4423|consen 88 FGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS--AKNE-A-----TRQF 159 (229)
T ss_pred hcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH--hhhh-h-----HHHH
Confidence 55555667889999999999986555443 222222211 1 122222379999999996533 1111 0 0012
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.+..... -|.....+|++.+.++++..+.+.++.--+.
T Consensus 160 d~f~ken-----gf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 160 DNFKKEN-----GFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred HHHHhcc-----CccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 2222222 2333345788888999999888877654444
No 379
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=5.7e-05 Score=68.00 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC----------ccccccCCC--C---------C--cceeEEEEEE---------Ee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK----------KAFMSKAGS--S---------G--VTKTCEMQRT---------ML 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~----------~~~~~~~~~--~---------~--~T~~~~~~~~---------~~ 66 (311)
....|+++|++|+||||++..|... .+......+ . + ....+..... ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4568999999999999999877532 110000000 0 0 0001111000 11
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..+.||||||.... +.....++..++.... ..+-+++|+|++.. ..+ ..+.+..... ..+--+++|
T Consensus 253 -~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~~~---~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQFSP---FSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHhcC---CCCCEEEEE
Confidence 3568999999997642 2212344555544332 23367889998733 222 2233444321 125678899
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|.|....
T Consensus 321 KlDet~~ 327 (388)
T PRK12723 321 KLDETTC 327 (388)
T ss_pred eccCCCc
Confidence 9997754
No 380
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.23 E-value=1.8e-06 Score=71.27 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=68.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..-++.++|-|++||||++..|+|... ...+..++|-........+ .+..+.+.|.||+.+...+...-... +
T Consensus 58 g~a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg~q----v 130 (358)
T KOG1487|consen 58 GDARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRGKQ----V 130 (358)
T ss_pred cceeeeEEecCccchhhhhhhhcCCCC--ccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCccE----E
Confidence 446899999999999999999999754 2233333333333333335 88899999999987653322211111 2
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK 135 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~ 135 (311)
....+-+++|+.|+|+-.+++ ...+++.-.+.+|-
T Consensus 131 iavartcnli~~vld~~kp~~--hk~~ie~eleg~gi 165 (358)
T KOG1487|consen 131 IAVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGI 165 (358)
T ss_pred EEEeecccEEEEEeeccCccc--HHHHHHHhhhccee
Confidence 223456799999999886665 33455544444554
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.22 E-value=6e-05 Score=60.44 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=43.2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.|+||||.... +......+..... ...++.+++|+|+... .........+.+..+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 457899999996531 2333444443332 2347999999998622 222333444433333 367778999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98755
No 382
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=98.17 E-value=1.2e-06 Score=83.56 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=87.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE------------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE------------------------------------ 60 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~------------------------------------ 60 (311)
.-.-+.|+|+|..++||||.++++.|..+.+.+.+- +|+...
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~gi--vTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI 103 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGI--VTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI 103 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccc--eecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence 345688999999999999999999998776543321 110000
Q ss_pred -------------------EEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC
Q 021534 61 -------------------MQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS 119 (311)
Q Consensus 61 -------------------~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~ 119 (311)
.-.+....-.++++||+||+..... ..+.+...+......++...+++|..+...+ ..
T Consensus 104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d 182 (657)
T KOG0446|consen 104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SD 182 (657)
T ss_pred HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hh
Confidence 0001111223789999999976543 3356888899999899999999999886652 11
Q ss_pred hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 120 KEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 120 ~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
-.....++..++.-+ ....++-|+||+|..+.
T Consensus 183 ~ats~alkiarevDp--~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 183 IATSPALVVAREVDP--GGSRTLEVITKFDFMDK 214 (657)
T ss_pred hhcCHHHHHHHhhCC--CccchhHHhhhHHhhhc
Confidence 122345555555432 23479999999998765
No 383
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=5.2e-05 Score=69.15 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=42.8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||... .++....++..... .-.+|.+++|+|+.. ..........+.+.++ ..-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 44689999999653 23334444544433 225788999999762 1222333333433332 467779999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 250 D~~~~ 254 (428)
T TIGR00959 250 DGDAR 254 (428)
T ss_pred cCccc
Confidence 96533
No 384
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.16 E-value=0.00015 Score=62.21 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=40.2
Q ss_pred cCeEEEEEeccCCCCC---ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 138 SDYMIVVFTGGDELED---NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..|+++|+||+|.+.- ..+-.++... .....++..+-.+|...++ +|.+...+++-|..+|.+-.
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfd-fiq~~lRkFCLr~GaaLiy------TSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFD-FIQSHLRKFCLRYGAALIY------TSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHH-HHHHHHHHHHHHcCceeEE------eecccccchHHHHHHHHHHh
Confidence 3479999999997421 1011222211 1122356666666776665 67778899999999988654
No 385
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.15 E-value=1.4e-05 Score=62.98 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=57.0
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
..++|++|+|+|++++....+..+...+.. . .+|+++|+||+|+... .....+ ..+....+.++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~----~~p~iiv~NK~Dl~~~--~~~~~~---------~~~~~~~~~~~ 73 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE-L----GKKLLIVLNKADLVPK--EVLEKW---------KSIKESEGIPV 73 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-C----CCcEEEEEEhHHhCCH--HHHHHH---------HHHHHhCCCcE
Confidence 556799999999986555555444443322 1 2599999999998643 222211 11222223344
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++ .|+.++.|+++|++.+.+.++.
T Consensus 74 ~~------iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VY------VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EE------EEccccccHHHHHHHHHHHHhh
Confidence 44 6888889999999999988764
No 386
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.5e-05 Score=69.39 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-------------CCcceeEEEEEEE---------e---------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-------------SGVTKTCEMQRTM---------L--------- 66 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-------------~~~T~~~~~~~~~---------~--------- 66 (311)
.-..+++|+|...+|||||+..|+.... ..+.+. .|-|..+....+- +
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3468999999999999999988865432 111000 1111111100000 0
Q ss_pred --eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 67 --KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 67 --~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
....-++++|..|...- .+.....+. -.-+|..++|+.++..++...++-|-.+..+. .|++++
T Consensus 244 ~e~SSKlvTfiDLAGh~kY-------~~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~-----iPfFvl 309 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKY-------QKTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAALN-----IPFFVL 309 (591)
T ss_pred HhhhcceEEEeecccchhh-------heeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHhC-----CCeEEE
Confidence 01236889999985421 111111111 22479999999998778877777777766542 489999
Q ss_pred EeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 145 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 145 ~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
++|+|+..+ ..++..+++ +..++.+.|-.
T Consensus 310 vtK~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~ 338 (591)
T KOG1143|consen 310 VTKMDLVDR--QGLKKTVKD-----LSNLLAKAGCT 338 (591)
T ss_pred EEeeccccc--hhHHHHHHH-----HHHHHhhcCcc
Confidence 999999988 667766665 66677666544
No 387
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.8e-06 Score=74.46 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------------------KAGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------------------~~~~~~~T~~~~~~~~~ 65 (311)
.+.....+++|+|+..+||||+-+.|++...... .....+-|+.+....++
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 4556789999999999999999888766443211 01114678888888888
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-C----CCChh-HHHHHHHHHHHhCCCccC
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-N----RFSKE-EGAAIHILESLFGKKISD 139 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-~----~~~~~-~~~~l~~l~~~~~~~~~~ 139 (311)
. ..+.+++.|+||.-.+- .-.-....++|+-++|+.+. . .+... ...--.+|.+..|. +
T Consensus 154 t-e~~~ftiLDApGHk~fv-----------~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~ 218 (501)
T KOG0459|consen 154 T-ENKRFTILDAPGHKSFV-----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---K 218 (501)
T ss_pred e-cceeEEeeccCcccccc-----------hhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---c
Confidence 8 88999999999976531 11112234568888888763 1 12211 22222344555554 6
Q ss_pred eEEEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHH
Q 021534 140 YMIVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 140 ~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
++|+++||+|.... ..+..+++... +...+...|-+.+.=-...+.|..++.++.+..+
T Consensus 219 ~lVv~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 219 HLIVLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eEEEEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 89999999997533 22444444443 4444443332111000012245555666655554
No 388
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.12 E-value=1.7e-05 Score=63.27 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=46.1
Q ss_pred cEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 106 HAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 106 d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
+.-|||+|++.+- + .-++ .|+...+-=++|+||.|++.--+..++.+... .+.+-+ ..+++.
T Consensus 119 ~~~v~VidvteGe---~-----~P~K-~gP~i~~aDllVInK~DLa~~v~~dlevm~~d-----a~~~np--~~~ii~-- 180 (202)
T COG0378 119 HLRVVVIDVTEGE---D-----IPRK-GGPGIFKADLLVINKTDLAPYVGADLEVMARD-----AKEVNP--EAPIIF-- 180 (202)
T ss_pred ceEEEEEECCCCC---C-----Cccc-CCCceeEeeEEEEehHHhHHHhCccHHHHHHH-----HHHhCC--CCCEEE--
Confidence 4788888876321 1 0011 23333334678999999886533444443332 222111 234444
Q ss_pred CCchhhhhhHHHHHHHHHHHHHH
Q 021534 186 NKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 186 ~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
++.++++|++++++++...
T Consensus 181 ----~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 181 ----TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred ----EeCCCCcCHHHHHHHHHhh
Confidence 5677889999999988653
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.10 E-value=1.1e-05 Score=69.09 Aligned_cols=123 Identities=24% Similarity=0.207 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-------ccccCCC----------CCcceeEEEEEEE-----------ee--C
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-------FMSKAGS----------SGVTKTCEMQRTM-----------LK--A 68 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-------~~~~~~~----------~~~T~~~~~~~~~-----------~~--~ 68 (311)
+..+|+++|++|+||||++..|.+.-. +...... ......+...... .. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 447999999999999999988865311 0000000 0000001111100 00 2
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..+.||||||-... +....+++...+... .++-+++|+|++.. ...-...++.+.. ..+--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~f~~------~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHHhCC------CCCCEEEEEee
Confidence 458899999996532 233444455444322 45778999998622 1112233333322 23567889999
Q ss_pred CCCCC
Q 021534 149 DELED 153 (311)
Q Consensus 149 D~~~~ 153 (311)
|....
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 98755
No 390
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.07 E-value=2.1e-05 Score=71.61 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=56.5
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC--CC-C-----ChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR--NR-F-----SKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~--~~-~-----~~~~~~~l 126 (311)
.|..+....+.+..+..+.++|+.|-.. -++-|..++.++++||||++.+ +. + +..-.+.+
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~-----------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl 289 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRS-----------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESL 289 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGG-----------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHH
T ss_pred CCCCeeEEEEEeecccccceecCCCCch-----------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHH
Confidence 4455555555543677999999999432 2344556688999999999976 11 1 11224567
Q ss_pred HHHHHHhCCCc--cCeEEEEEeccCCCC
Q 021534 127 HILESLFGKKI--SDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~~--~~~~ilv~nk~D~~~ 152 (311)
..+..++.... ..|+||++||.|.+.
T Consensus 290 ~lF~~i~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 290 NLFESICNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred HHHHHHHhCcccccCceEEeeecHHHHH
Confidence 77777776654 358999999999763
No 391
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=3.4e-06 Score=75.50 Aligned_cols=59 Identities=29% Similarity=0.421 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
..+++|+|.+|+|||||+|.|+|.....++... ..+|.......+ .+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l---~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL---PS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe---cC-CCeecCCCchhh
Confidence 358999999999999999999986543332211 112332222222 22 236889999754
No 392
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=2.6e-05 Score=67.47 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
....+...+..+|+||+|+|+..+++..+..+.+.+. .+|+++|+||+|+.+. .....+. ..
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~-------~kp~IiVlNK~DL~~~--~~~~~~~---------~~ 72 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG-------NKPRLIVLNKADLADP--AVTKQWL---------KY 72 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC-------CCCEEEEEEccccCCH--HHHHHHH---------HH
Confidence 4444455567789999999998676665555444431 2589999999998644 3233222 22
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+..+++ .|+.++.++..|++.+.++++.
T Consensus 73 ~~~~~~~vi~------iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 73 FEEKGIKALA------INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 2222334444 5667778899999988877654
No 393
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=98.03 E-value=2.5e-05 Score=66.92 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+...|.|+|+..+|||.|+|.|++.. .|..+....++|..+-.+..... .+..+.++||.|+.+....+......+.
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~if 99 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIF 99 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHHHH
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHHHH
Confidence 45688999999999999999999853 56666666677776655543321 3458999999999984333222222222
Q ss_pred H-HHHhccCCccEEEEEEECCCCCChhHHHHHHHH
Q 021534 96 K-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHIL 129 (311)
Q Consensus 96 ~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l 129 (311)
. ..-.+ ..+||=. ...+...+...|..+
T Consensus 100 ~Ls~LLS----S~~IyN~--~~~i~~~~l~~L~~~ 128 (260)
T PF02263_consen 100 ALSMLLS----SVLIYNS--MGNIDEDDLDQLELF 128 (260)
T ss_dssp HHHHHH-----SEEEEEE--CSSSSHHHHHCCHHH
T ss_pred HHHHHHh----CceeeCC--CCccchhHHHHHHHH
Confidence 2 11122 4555544 335555555555443
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.02 E-value=9.7e-06 Score=75.76 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-+|++||.+|+|||||++.|.|...
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 447999999999999999999999875
No 395
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=7.6e-06 Score=69.23 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=91.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCCcceeEEE----------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG-SSGVTKTCEM---------------------------------- 61 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~-~~~~T~~~~~---------------------------------- 61 (311)
....++|+-+|+...||||++.++.|-....-... ....|....+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 34568999999999999999999988532100000 0001111110
Q ss_pred EEEE--eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCcc
Q 021534 62 QRTM--LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 62 ~~~~--~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~ 138 (311)
.... +..-+.+.+||+||++- +...+.....-.|+.++++-++++ ..+...+-|..+.-+- .
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----L 179 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----L 179 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----h
Confidence 0000 00113578999999542 221121111224888888877622 2222222222222111 2
Q ss_pred CeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
++++++-||+|+..+. ..++.+.+ +...+... +.++++ .||.-+.+++.+.++|.+.++.
T Consensus 180 khiiilQNKiDli~e~-~A~eq~e~------I~kFi~~t~ae~aPiiP------isAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKES-QALEQHEQ------IQKFIQGTVAEGAPIIP------ISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred ceEEEEechhhhhhHH-HHHHHHHH------HHHHHhccccCCCceee------ehhhhccChHHHHHHHHhcCCC
Confidence 5899999999998661 22332222 33333321 456666 7888889999999999887653
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.00 E-value=1.2e-05 Score=64.46 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=48.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH---HHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA---AIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.++|+||-..... .-.+...+...+..-.-++ +++|++|.. -+....+. .+..+..+..- ..|-|-|++
T Consensus 98 ddylifDcPGQIELyt-H~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~l--E~P~INvls 172 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYT-HLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMISL--EVPHINVLS 172 (273)
T ss_pred CCEEEEeCCCeeEEee-cChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHHh--cCcchhhhh
Confidence 3678999999665321 2224444555554422223 788888865 33322222 22333333222 238899999
Q ss_pred ccCCCCC-ChhcHHHHhh
Q 021534 147 GGDELED-NDETLEDYLG 163 (311)
Q Consensus 147 k~D~~~~-~~~~~~~~~~ 163 (311)
|+|++.+ ....++.++.
T Consensus 173 KMDLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLN 190 (273)
T ss_pred HHHHhhhhhHHHHHHhcC
Confidence 9999865 2234444433
No 397
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.96 E-value=3.6e-05 Score=61.62 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
++...+......+|++++|+|++.+....+..++..+ .+ +|+++|+||+|+... .....++ .
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~---------~ 69 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL---------K 69 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH---------H
Confidence 3444445556778999999999866554444433322 12 589999999998644 2222211 2
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+...+..++. .|+.++.|+++|.+.+...++
T Consensus 70 ~~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 70 YFESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 22222333343 677888999999999988753
No 398
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.95 E-value=0.00066 Score=52.57 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=66.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC---CccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCC-C---------CCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG---KKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTP-G---------LFDSS 84 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g---~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTP-G---------~~~~~ 84 (311)
..+|++.|+||+||||++..+.. ...+..+.- .|.++.. ++. .+.|+|+. | +....
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf---~t~EVR~------gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF---ITPEVRE------GGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE---Eeeeeec------CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 48999999999999999887753 222222111 1111111 111 34455544 1 11111
Q ss_pred -----CChHHHHHHHHHHHHhccCCccEEEEEEE-CCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 85 -----ADPEFVSKEIVKCIGMAKDGIHAVLLVFS-IRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~d~il~v~d-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
...+.+.+-....+..++..+|+|| +| ++ ++......+.+.+.+.+..+ +|++.++.+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvII--IDEIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVII--IDEIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEE--Eeccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 1223344445556666666667654 55 45 88877888889999888653 58887776554
No 399
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.92 E-value=4.3e-05 Score=62.29 Aligned_cols=97 Identities=13% Similarity=-0.015 Sum_probs=59.1
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-H
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-E 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~ 172 (311)
+...+..++..+|++++|+|+++........+ .... ...|+++|+||+|+... ......+.. +. .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~---~~~~~ilV~NK~Dl~~~--~~~~~~~~~-----~~~~ 89 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFG---GNNPVILVGNKIDLLPK--DKNLVRIKN-----WLRA 89 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH----HHhc---CCCcEEEEEEchhcCCC--CCCHHHHHH-----HHHH
Confidence 56677778899999999999984433222222 1111 23599999999998754 221111111 11 0
Q ss_pred H-HHhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 I-LQLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~-~~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+ ....+ ..+++ +|+.++.|+++|++.|.+.++
T Consensus 90 ~~~~~~~~~~~~i~~------vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 90 KAAAGLGLKPKDVIL------ISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHhhcCCCcccEEE------EECCCCCCHHHHHHHHHHHhh
Confidence 0 01111 12333 688889999999999998775
No 400
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.91 E-value=2.8e-05 Score=63.70 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=28.8
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
..++|.+|.|+|.+.+--... +-+..|.+-.| .+++.+|+||+|..
T Consensus 153 ~~~vD~vivVvDpS~~sl~ta-eri~~L~~elg---~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTA-ERIKELAEELG---IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHH-HHHHHHHHHhC---CceEEEEEeeccch
Confidence 467899999999882211112 22233333333 26999999999954
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0014 Score=58.76 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=75.3
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhC------CccccccCC-C-C---------CcceeEEEEEE----------
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILG------KKAFMSKAG-S-S---------GVTKTCEMQRT---------- 64 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g------~~~~~~~~~-~-~---------~~T~~~~~~~~---------- 64 (311)
++.-...++..|+++|-.|+||||.+-.|.. ..+..+... . + +.-..+.++..
T Consensus 92 ~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Ia 171 (451)
T COG0541 92 ELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIA 171 (451)
T ss_pred ccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHH
Confidence 3333355668899999999999998876642 121111000 0 0 00001111111
Q ss_pred -------EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCc
Q 021534 65 -------MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI 137 (311)
Q Consensus 65 -------~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~ 137 (311)
.. .+..+.||||.|=.. .++.+.+++...-. .-.||=+|||+|+.-+ ......-+.+.+..+
T Consensus 172 k~al~~ak~-~~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~G--QdA~~~A~aF~e~l~--- 240 (451)
T COG0541 172 KAALEKAKE-EGYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIG--QDAVNTAKAFNEALG--- 240 (451)
T ss_pred HHHHHHHHH-cCCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccc--hHHHHHHHHHhhhcC---
Confidence 11 234789999999543 34566666665433 3368999999997622 122333444554443
Q ss_pred cCeEEEEEeccCCCCCChhcHH
Q 021534 138 SDYMIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~~~~~~~ 159 (311)
-.=+|+||.|....-+..+.
T Consensus 241 --itGvIlTKlDGdaRGGaALS 260 (451)
T COG0541 241 --ITGVILTKLDGDARGGAALS 260 (451)
T ss_pred --CceEEEEcccCCCcchHHHh
Confidence 36678999997655444443
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.90 E-value=9e-05 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+++|.+|+|||||+..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999988754
No 403
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.87 E-value=0.0011 Score=61.22 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=39.9
Q ss_pred CeEEEEEeccCCCCCC------hhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELEDN------DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.|++||++|+|.+... .+.--+++.+ .++.++-.+|...++ ++.....+++-|..+|.+.+.
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq----~LR~~cL~yGAsL~y------ts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQ----YLRTFCLKYGASLIY------TSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHH----HHHHHHHhcCCeEEE------eeccccccHHHHHHHHHHHhc
Confidence 4899999999976320 0111123333 467777777887765 444555788888888777653
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.85 E-value=7e-05 Score=47.22 Aligned_cols=43 Identities=26% Similarity=0.300 Sum_probs=29.5
Q ss_pred CccEEEEEEECC--CCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 104 GIHAVLLVFSIR--NRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 104 ~~d~il~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
-.++|+|++|.+ .+.+-.+ ..+++.++..|+. +|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 358999999998 4555554 6778888888864 69999999998
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.85 E-value=0.00062 Score=60.83 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=94.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-----------------cCCCCCcceeEEEE-----EEEeeCC--ceE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-----------------KAGSSGVTKTCEMQ-----RTMLKAG--QVV 72 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-----------------~~~~~~~T~~~~~~-----~~~~~~~--~~l 72 (311)
..+.+-|+|+|+..+||||||.++...-++|. +.+..-.|+..... .+.+.++ .++
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 34669999999999999999999755333221 11111223332221 1233122 388
Q ss_pred EEEeCCCCCCCC--CChHHHHHH------------HHHHHHhcc-----CC-ccEEEEEEECC-CCCC-----hhHHHHH
Q 021534 73 NVIDTPGLFDSS--ADPEFVSKE------------IVKCIGMAK-----DG-IHAVLLVFSIR-NRFS-----KEEGAAI 126 (311)
Q Consensus 73 ~liDTPG~~~~~--~~~~~~~~~------------~~~~~~~~~-----~~-~d~il~v~d~~-~~~~-----~~~~~~l 126 (311)
++||+-||.-.. +..++-..+ |..++.--- .+ .=+++...|.+ ..+. ..+.+.+
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 999998863211 111100000 111111000 11 13455555765 2332 3345667
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+.|++. .+|+++++|-.+=... ++.. - ..++-.+++.++.+.+ +...+...+..+++.+.
T Consensus 174 ~ELk~i-----gKPFvillNs~~P~s~--et~~----L-----~~eL~ekY~vpVlpvn----c~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 174 EELKEI-----GKPFVILLNSTKPYSE--ETQE----L-----AEELEEKYDVPVLPVN----CEQLREEDITRILEEVL 233 (492)
T ss_pred HHHHHh-----CCCEEEEEeCCCCCCH--HHHH----H-----HHHHHHHhCCcEEEee----hHHcCHHHHHHHHHHHH
Confidence 777763 3699999997763333 2211 1 2445567788887743 23334455666665544
Q ss_pred HHHHHcCCCCCcHHHHHHHH
Q 021534 207 SVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ 226 (311)
--.+-.....+.+.....+.
T Consensus 234 yEFPV~Ei~~~lP~Wve~L~ 253 (492)
T PF09547_consen 234 YEFPVSEININLPKWVEMLE 253 (492)
T ss_pred hcCCceEEEeecchHHhhcC
Confidence 33332233334444444433
No 406
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00012 Score=60.16 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=66.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|.-.+||||+-..++..-.. -..-....|......++.. .--++.+||.||--+.-...-. .+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsP-neTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D-~e~i----- 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFD-YEMI----- 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCC-CceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccC-HHHH-----
Confidence 467999999999999988766654321 1000111111111111111 1126789999996554221110 1111
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
++++-++|||+|+.+.+-..-..+.-.+.....-....++=+.+.|.|.+.+
T Consensus 99 --F~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 99 --FRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred --HhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 5567899999999733322221222223333333333467888999998855
No 407
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.83 E-value=8.5e-05 Score=64.65 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=59.5
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
....+...+..+|+||+|+|+..+++..+..+...+. .+|+++|+||+|+.+. .....++ ..
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~--~~~~~~~---------~~ 75 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADP--EVTKKWI---------EY 75 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCH--HHHHHHH---------HH
Confidence 3344455567789999999998666655544433332 2589999999998644 3233222 22
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+..++. .|+.++.++..|++.+..+++.
T Consensus 76 ~~~~~~~vi~------vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 76 FEEQGIKALA------INAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred HHHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 2222333444 4667778899999888877653
No 408
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.82 E-value=8e-05 Score=64.93 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-----------ccccCC-----CCCcceeEEE---------------EEEEee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-----------FMSKAG-----SSGVTKTCEM---------------QRTMLK 67 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-----------~~~~~~-----~~~~T~~~~~---------------~~~~~~ 67 (311)
-+.+|+|+|+..+|||||+..|+.... |...+. ..++..++-- ....|.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 458999999999999999988876432 100000 0000000000 011111
Q ss_pred -----CCceEEEEeCCCCCCCCCChHHHHHHHHH-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE
Q 021534 68 -----AGQVVNVIDTPGLFDSSADPEFVSKEIVK-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 68 -----~~~~l~liDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
.-.-+++||..|.... +.. .+...-.-+|...+++-++..+-.-..+-|.+...+ ..|+
T Consensus 212 kIce~saKviTFIDLAGHEkY----------LKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL-----~VPV 276 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKY----------LKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL-----HVPV 276 (641)
T ss_pred eeccccceeEEEEeccchhhh----------hheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh-----cCcE
Confidence 1236889999995421 111 111223447888888876644444444444433332 2499
Q ss_pred EEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 142 ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++|+||+|+... ..+++.+.. +..++..-|
T Consensus 277 fvVVTKIDMCPA--NiLqEtmKl-----l~rllkS~g 306 (641)
T KOG0463|consen 277 FVVVTKIDMCPA--NILQETMKL-----LTRLLKSPG 306 (641)
T ss_pred EEEEEeeccCcH--HHHHHHHHH-----HHHHhcCCC
Confidence 999999999887 777777665 666666634
No 409
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.81 E-value=0.00012 Score=54.89 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+|+++|.+|+|||+|+.++...
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcC
Confidence 37999999999999999998543
No 410
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.77 E-value=6.1e-05 Score=58.22 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=38.5
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..+..+|++++|+|+..+.+..+..+...+.... ..+|+++|+||+|+..+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCCH
Confidence 3456779999999998777766667777776542 23699999999998754
No 411
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.75 E-value=2.6e-05 Score=72.92 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEE
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRT 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~ 64 (311)
..-+|+++|++|+|||||++.|.|.....++....+.+..+.++..
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence 4578999999999999999999887653334334455555555543
No 412
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00044 Score=59.96 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------ccccc-cCCC--------------CCcceeEEEEE------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK------KAFMS-KAGS--------------SGVTKTCEMQR------------ 63 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~-~~~~--------------~~~T~~~~~~~------------ 63 (311)
.+.+..|+++|-+|+||||.|-.|... ++... +... .++..-...+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 345789999999999999999887432 11100 0000 01111000000
Q ss_pred -EEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH---HHHhccC-CccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc
Q 021534 64 -TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK---CIGMAKD-GIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 64 -~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~---~~~~~~~-~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 138 (311)
... .+..+.|+||.|=..+ ...+..++.+ .+....+ -+|-+++|+|++-+ .+...-.+.+.+..+-
T Consensus 216 ~Aka-r~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~l--- 286 (340)
T COG0552 216 AAKA-RGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVGL--- 286 (340)
T ss_pred HHHH-cCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcCC---
Confidence 011 3457999999995543 2344444443 3333332 25779999998722 1223333455555442
Q ss_pred CeEEEEEeccCCC
Q 021534 139 DYMIVVFTGGDEL 151 (311)
Q Consensus 139 ~~~ilv~nk~D~~ 151 (311)
--+++||.|..
T Consensus 287 --~GiIlTKlDgt 297 (340)
T COG0552 287 --DGIILTKLDGT 297 (340)
T ss_pred --ceEEEEecccC
Confidence 56789999954
No 413
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.73 E-value=0.00012 Score=57.56 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=51.3
Q ss_pred cEEEEEEECCCCCChhHHHHHH-HHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEe
Q 021534 106 HAVLLVFSIRNRFSKEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 184 (311)
Q Consensus 106 d~il~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 184 (311)
|++|+|+|+..+.+..+..+.. .+.. ..+|+++|+||+|++.. ..+..++.. +....+..+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~--~~~~~~~~~--------~~~~~~~~ii~- 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPK--EVLRKWLAY--------LRHSYPTIPFK- 64 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCH--HHHHHHHHH--------HHhhCCceEEE-
Confidence 7899999998665555443331 2221 23599999999998754 333333221 11222333344
Q ss_pred cCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 185 DNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 185 ~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.|+.++.++++|.+.|.+..
T Consensus 65 -----vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 -----ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred -----EeccCCcChhhHHHHHHHHh
Confidence 67888899999999886543
No 414
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=0.00062 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999987653
No 415
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.70 E-value=0.0051 Score=60.38 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=62.2
Q ss_pred EcCCCCcHHHHHHHHhCCccccccC-CCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 26 VGRTGNGKSATANSILGKKAFMSKA-GSSGVTKTCEMQRTML--KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 26 ~G~~g~GKSSlin~l~g~~~~~~~~-~~~~~T~~~~~~~~~~--~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+|..++|||||+|.|+|...-.-.. +...+|..+-...... .....+.++|+-|.+......+...+.-......+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf~la- 79 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALFALA- 79 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHHHHH-
Confidence 5999999999999999987522222 1223443332222211 02457889999997765322221122222222222
Q ss_pred CCccEEEEE---EECCCCCChhH----HHHHHHHHHHhCCC----ccCeEEEEEeccCC
Q 021534 103 DGIHAVLLV---FSIRNRFSKEE----GAAIHILESLFGKK----ISDYMIVVFTGGDE 150 (311)
Q Consensus 103 ~~~d~il~v---~d~~~~~~~~~----~~~l~~l~~~~~~~----~~~~~ilv~nk~D~ 150 (311)
-+|++|+= +|++ +..... +.+++.-.++|+.. ....+++|+--++.
T Consensus 80 -~s~~~iiN~w~~~iG-~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~ 136 (742)
T PF05879_consen 80 -VSDVLIINMWEHDIG-RYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTG 136 (742)
T ss_pred -hhhheeeehhhhhhh-hhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCC
Confidence 23554433 3665 554443 34444445666432 22235555554443
No 416
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00015 Score=63.56 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
++..+.|+||.|-.. ....+.+++.+.... -.||-+|||+|++-.... ..-...+++..+ ---+++||
T Consensus 182 e~fdvIIvDTSGRh~---qe~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vd-----vg~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHK---QEASLFEEMKQVSKA--IKPDEIIFVMDASIGQAA--EAQARAFKETVD-----VGAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCchh---hhHHHHHHHHHHHhh--cCCCeEEEEEeccccHhH--HHHHHHHHHhhc-----cceEEEEe
Confidence 455899999999543 345566666655433 358999999998733222 222233444333 35677999
Q ss_pred cCCCCCChhcHH
Q 021534 148 GDELEDNDETLE 159 (311)
Q Consensus 148 ~D~~~~~~~~~~ 159 (311)
.|....-+..+.
T Consensus 250 lDGhakGGgAlS 261 (483)
T KOG0780|consen 250 LDGHAKGGGALS 261 (483)
T ss_pred cccCCCCCceee
Confidence 998755444444
No 417
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.67 E-value=9e-05 Score=60.65 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH---HHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE---GAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
....|+|.||-..........+. |.+.+.. ..--=+++-++|.- -++.-. ...+-.+..++.-+ -|-|-|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~-I~~~Lek-~~~rl~~V~LiDs~-ycs~p~~~iS~lL~sl~tMl~me--lphVNvlS 171 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNK-IFRKLEK-LDYRLVAVNLIDSH-YCSDPSKFISSLLVSLATMLHME--LPHVNVLS 171 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHH-HHHHHHH-cCceEEEEEeeece-eeCChHHHHHHHHHHHHHHHhhc--ccchhhhh
Confidence 46789999996554333333333 3333322 11112455555643 222111 11122233333222 37888999
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|+|+...
T Consensus 172 K~Dl~~~ 178 (290)
T KOG1533|consen 172 KADLLKK 178 (290)
T ss_pred HhHHHHh
Confidence 9998754
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.67 E-value=0.0023 Score=62.98 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|+|++|+|||||++.+.+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 368999999999999999999876
No 419
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.66 E-value=0.0015 Score=50.32 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=54.6
Q ss_pred EEcCCCCcHHHHHHHHhC------CccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 25 LVGRTGNGKSATANSILG------KKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 25 v~G~~g~GKSSlin~l~g------~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
.-|..|+||||+--.+.. .........+.+... ...+.|+|||+..+ ......
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~-----------~yd~VIiD~p~~~~---------~~~~~~- 63 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL-----------DYDYIIIDTGAGIS---------DNVLDF- 63 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC-----------CCCEEEEECCCCCC---------HHHHHH-
Confidence 457799999998655432 111111111111111 14578999998543 111222
Q ss_pred HhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDE 150 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 150 (311)
+..+|.++++++.+ ..+-.+ ...++.+....+ ..++.+|+|+++.
T Consensus 64 ---l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 64 ---FLAADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred ---HHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 34459999999887 333222 455556654332 2478899999873
No 420
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.019 Score=57.60 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++++|+||+|||+++..|...
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998754
No 421
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=6e-05 Score=62.64 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
=.|+++|+||||||||+|.+.|-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999999654
No 422
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=0.00023 Score=53.97 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
No 423
>PRK12289 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00015 Score=64.53 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=47.8
Q ss_pred cCCccEEEEEEECCCC-CChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCc
Q 021534 102 KDGIHAVLLVFSIRNR-FSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR 180 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (311)
+.++|.+++|+|+.++ +... .+-+++.... ....|+++|+||+|++.. ..+..+ ...+...+..
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~--~LdR~L~~a~--~~~ip~ILVlNK~DLv~~--~~~~~~---------~~~~~~~g~~ 151 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPW--QLSRFLVKAE--STGLEIVLCLNKADLVSP--TEQQQW---------QDRLQQWGYQ 151 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEEchhcCCh--HHHHHH---------HHHHHhcCCe
Confidence 5678999999999733 3332 1112222211 123589999999998754 333322 2222334444
Q ss_pred EEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 181 CVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 181 ~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+++ +|+.++.|+++|++.+.
T Consensus 152 v~~------iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 152 PLF------ISVETGIGLEALLEQLR 171 (352)
T ss_pred EEE------EEcCCCCCHHHHhhhhc
Confidence 444 46666677777766544
No 424
>PRK02224 chromosome segregation protein; Provisional
Probab=97.54 E-value=0.023 Score=57.49 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+|||||+.+|.
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456779999999999999963
No 425
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.53 E-value=0.0028 Score=46.30 Aligned_cols=103 Identities=18% Similarity=0.181 Sum_probs=52.6
Q ss_pred EEEE-cCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 23 LVLV-GRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 23 I~v~-G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
|+++ +..|+||||+.-.|...-. ... +..+. ........+..+.|+|||+..+ ......
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~--~~~---~~~~~--l~d~d~~~~~D~IIiDtpp~~~---------~~~~~~---- 61 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALA--KEA---GRRVL--LVDLDLQFGDDYVVVDLGRSLD---------EVSLAA---- 61 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHH--hcC---CCcEE--EEECCCCCCCCEEEEeCCCCcC---------HHHHHH----
Confidence 3443 5689999998766543211 000 00000 0000000122678999998654 112222
Q ss_pred cCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 102 KDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
+..+|.++++++.+ ..+.. ...+++.+++.. .....++.+|+|+
T Consensus 62 l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 62 LDQADRVFLVTQQD-LPSIRNAKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred HHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence 33459999999887 33333 345556665532 2112367788774
No 426
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00018 Score=65.04 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=73.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCCcceeEEEEEEEee-------------
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--------------SSGVTKTCEMQRTMLK------------- 67 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--------------~~~~T~~~~~~~~~~~------------- 67 (311)
....+..++.|+.+...|||||-.+|.......+... ..+.|.........+.
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 3455678899999999999999999875543222110 1233433333222110
Q ss_pred --CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 68 --AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 68 --~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
++.-+++||.||+.|++ +-+..+++-.|+.+.|+|.-++........|... .+.. .+| ++++
T Consensus 94 d~~~FLiNLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA---~~ER-IkP-vlv~ 157 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFS-----------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA---IAER-IKP-VLVM 157 (842)
T ss_pred CCcceeEEeccCCCcccch-----------hhhhheeEeccCcEEEEEccCceEechHHHHHHH---HHhh-ccc-eEEe
Confidence 23378999999999853 2233345667999999997656655554444332 2221 234 5678
Q ss_pred eccCCC
Q 021534 146 TGGDEL 151 (311)
Q Consensus 146 nk~D~~ 151 (311)
||+|..
T Consensus 158 NK~DRA 163 (842)
T KOG0469|consen 158 NKMDRA 163 (842)
T ss_pred ehhhHH
Confidence 999964
No 427
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0006 Score=63.16 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-CCcce-----eEEEEEEEeeCCceEEEEeCCC----CCCCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-SGVTK-----TCEMQRTMLKAGQVVNVIDTPG----LFDSSAD 86 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-~~~T~-----~~~~~~~~~~~~~~l~liDTPG----~~~~~~~ 86 (311)
-++.-+++++|++|||||||+|.|.|-.....+... .+.+. ..-..++.|..++++.+-+|-+ ++....+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 345678999999999999999999996542121110 11110 0001122332344444433322 3333344
Q ss_pred hHHHHHHHHHH-HHhccCCccEEEEEEE-CCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 87 PEFVSKEIVKC-IGMAKDGIHAVLLVFS-IRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~d~il~v~d-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
++++.+..... +....+.++++=.++. .+..++....+.+...+.+..+ .++++.
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~---~~l~ll 480 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP---ASLLLL 480 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC---CCEEEe
Confidence 44444433321 2223344566666663 3467888888877777665544 245554
No 428
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.47 E-value=0.0011 Score=56.37 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=54.2
Q ss_pred hccCCccEEEEEEECCCCC-ChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 100 MAKDGIHAVLLVFSIRNRF-SKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
.++.++|++++|+|+.++. +... ..++..+.. ...|+++|+||+|+... ...... +...+...
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~--~~~~~~--------~~~~~~~~ 96 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDD--EDMEKE--------QLDIYRNI 96 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCC--HHHHHH--------HHHHHHHC
Confidence 3578899999999998433 4333 233333322 23589999999998754 322211 12223334
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+..++. +|+.++.|+++|++.+..
T Consensus 97 g~~v~~------~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 97 GYQVLM------TSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCeEEE------EecCCchhHHHHHhhhcC
Confidence 555554 688888999999987753
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.46 E-value=0.032 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+++.|++++||||++.++.
T Consensus 327 ~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHH
Confidence 3457899999999999998874
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.46 E-value=0.00013 Score=47.22 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|.|++|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 431
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.46 E-value=0.0001 Score=58.16 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||+|.+.|-..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccC
Confidence 35789999999999999999998654
No 432
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.46 E-value=0.036 Score=51.22 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=65.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC-CChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAG--SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS-ADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~-~~~~~~~~ 92 (311)
-.-..-.|+|+|+..+|||||+|.|+|.+...-... ...+|..+=..++.- -...+.+.|.-|-+... +.+....+
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~-i~p~i~vmDvEGTDGrERGEDqdFEr 111 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAG-IEPCILVMDVEGTDGRERGEDQDFER 111 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcC-CCCceEEEecccCCcccccccccHHH
Confidence 344567899999999999999999999875221111 112222221222211 12247789998865332 22221111
Q ss_pred HHHHHHHhccCCccEEEE---EEECCCCCChhH----HHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 93 EIVKCIGMAKDGIHAVLL---VFSIRNRFSKEE----GAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~---v~d~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
.-+ . -++.-++++|+ ++|++ +..... +..++....+|++.-. .+.+++-=-|...
T Consensus 112 ksA-L--FaiavSevvivNMW~~qIG-~~Q~aN~~LLKTVfeV~lrLF~~rk~-k~~LlFVIRD~~~ 173 (772)
T KOG2203|consen 112 KSA-L--FAIAVSEVVIVNMWEHQIG-LYQGANMALLKTVFEVNLRLFSPRKN-KTLLLFVIRDKTG 173 (772)
T ss_pred HhH-H--HHHhhhheehhhHHHHHhh-HhhccCcHHHHHHHHHHHHHhCCCCC-ceEEEEEEecccC
Confidence 111 1 11233455543 34665 433333 4445555677776332 2333333335443
No 433
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.46 E-value=0.0007 Score=60.86 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+.+...+....+..+++++|+|+.+.... +...+.+..+ .+|+++|+||+|++... .... .+.. .+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~-~~~~----~l~ 117 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLS-KIKE----WMK 117 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHH-HHHH----HHH
Confidence 34555566667788999999998733322 2233444443 25899999999987541 1111 1111 022
Q ss_pred HHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
..+...+. .++. +||.++.|+++|++.|.+.
T Consensus 118 ~~~k~~g~~~~~i~~------vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 118 KRAKELGLKPVDIIL------VSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHcCCCcCcEEE------ecCCCCCCHHHHHHHHHHH
Confidence 23344443 2343 6888899999999999765
No 434
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=0.00011 Score=60.72 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.|+++|++|||||||+|.|-|-+.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35789999999999999999987654
No 435
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0032 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...-..|+++|..|+||||+++.|.+.+
T Consensus 185 ~tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 185 TTDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCCeeEEEeecCCCccHHHHHHHHhccC
Confidence 3455789999999999999999998865
No 436
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00087 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346789999999999999999998643
No 437
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.38 E-value=0.00014 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 5789999999999999999999764
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.37 E-value=0.0002 Score=55.07 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 439
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.34 E-value=0.0021 Score=57.30 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+..+|.|.-|+|||||+|.++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 56788999999999999999854
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.33 E-value=0.0027 Score=44.94 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 021534 23 LVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAK 102 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 102 (311)
+++.|..|+||||+...+...-. . .+.. + ... + .+.++|+||..+.... . .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~--~----~g~~--v----~~~-~--d~iivD~~~~~~~~~~-------~---~~~~~ 56 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA--K----RGKR--V----LLI-D--DYVLIDTPPGLGLLVL-------L---CLLAL 56 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--H----CCCe--E----EEE-C--CEEEEeCCCCccchhh-------h---hhhhh
Confidence 67889999999999988864321 1 0100 0 111 1 5789999996652100 0 11224
Q ss_pred CCccEEEEEEECC
Q 021534 103 DGIHAVLLVFSIR 115 (311)
Q Consensus 103 ~~~d~il~v~d~~ 115 (311)
..+|.++++++.+
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 4668999998876
No 441
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.31 E-value=0.0045 Score=57.32 Aligned_cols=119 Identities=15% Similarity=0.070 Sum_probs=66.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe-eCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML-KAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~-~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...+-+...|+|+.++|||.|+++++|...-. ...........+..+.. .....+.+-|.+-. +...
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~--------- 488 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD--NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF--------- 488 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhcccccc--ccccCCCCceeeeeeeeccccceEEEeecCcc-cccc---------
Confidence 34566888999999999999999999977522 11111111111111111 13335556665432 1100
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+...-..+|++++++|.+++-+ ...+..+.+.....-..|+++|.+|+|+-+
T Consensus 489 ---l~~ke~~cDv~~~~YDsS~p~s---f~~~a~v~~~~~~~~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 489 ---LTSKEAACDVACLVYDSSNPRS---FEYLAEVYNKYFDLYKIPCLMVATKADLDE 540 (625)
T ss_pred ---ccCccceeeeEEEecccCCchH---HHHHHHHHHHhhhccCCceEEEeeccccch
Confidence 0011134699999999984332 233333333333334469999999999653
No 442
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.26 E-value=0.16 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l 40 (311)
...++|+|++|+|||||++++
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai 48 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAI 48 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457788999999999999997
No 443
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.25 E-value=0.0071 Score=43.82 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEEc-CCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 23 LVLVG-RTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 23 I~v~G-~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
|+|+| ..|+||||+.-.|...-. . . +. .+ .-+.......+.|+|||+..+. .....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~--~-~---~~--~v--l~~d~d~~~d~viiD~p~~~~~---------~~~~~---- 58 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA--R-R---GK--RV--LLIDLDPQYDYIIIDTPPSLGL---------LTRNA---- 58 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH--h-C---CC--cE--EEEeCCCCCCEEEEeCcCCCCH---------HHHHH----
Confidence 56777 679999998766643211 1 0 10 01 1111111246889999996541 12222
Q ss_pred cCCccEEEEEEECC
Q 021534 102 KDGIHAVLLVFSIR 115 (311)
Q Consensus 102 ~~~~d~il~v~d~~ 115 (311)
+..+|.++.+++.+
T Consensus 59 l~~ad~viv~~~~~ 72 (104)
T cd02042 59 LAAADLVLIPVQPS 72 (104)
T ss_pred HHHCCEEEEeccCC
Confidence 23359999999877
No 444
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.24 E-value=0.00026 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 445
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.23 E-value=0.006 Score=53.70 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=40.8
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHH-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVK-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
...+|-|-|+.++. .+...+.. ......-..|+++-|+|+. .+.......-..+..... .-=++|+||.|
T Consensus 86 D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~~~~~~~~Qia----~AD~ivlNK~D 156 (323)
T COG0523 86 DRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDAIAELAEDQLA----FADVIVLNKTD 156 (323)
T ss_pred CEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHH-HhhhhHHHHHHHHHHHHH----hCcEEEEeccc
Confidence 56789999988751 11111111 0111233468999999998 433322212222222221 13578999999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
++++
T Consensus 157 lv~~ 160 (323)
T COG0523 157 LVDA 160 (323)
T ss_pred CCCH
Confidence 9987
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.21 E-value=0.0003 Score=58.12 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
++...|+|+|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45588999999999999999999864
No 447
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.20 E-value=0.0027 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+..+|.|.-|||||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 467789999999999999999854
No 448
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.0034 Score=47.95 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...+++.|++|+|||++++.+.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998653
No 449
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.19 E-value=0.0004 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 446889999999999999999998653
No 450
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0043 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-+|++||+.|+|||||+..|+|.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 5899999999999999999999754
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.17 E-value=0.00037 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
+.-.++|+|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346889999999999999999974
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.16 E-value=0.13 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....++|+|++|+||||++++|+.
T Consensus 29 ~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 29 SNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346779999999999999998863
No 453
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00043 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||+..|-+-..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 35789999999999999999877553
No 454
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.00038 Score=61.16 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999999654
No 455
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.14 E-value=0.007 Score=48.42 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=38.3
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 71 VVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 71 ~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
.+.||||||-.+. ..... +..+|.+|++++.+ ..+... ..+++.+... + .....+|+|+++
T Consensus 64 d~viiD~p~~~~~---------~~~~~----l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~---~~~~~iv~N~~~ 125 (179)
T cd02036 64 DYILIDSPAGIER---------GFITA----IAPADEALLVTTPE-ISSLRDADRVKGLLEAL-G---IKVVGVIVNRVR 125 (179)
T ss_pred CEEEEECCCCCcH---------HHHHH----HHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C---CceEEEEEeCCc
Confidence 6899999984431 12222 23568999999887 333332 3445555542 1 236788999998
Q ss_pred CC
Q 021534 150 EL 151 (311)
Q Consensus 150 ~~ 151 (311)
..
T Consensus 126 ~~ 127 (179)
T cd02036 126 PD 127 (179)
T ss_pred cc
Confidence 54
No 456
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00034 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.|+++|++|||||||+|.+.|--
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 467889999999999999999853
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.12 E-value=0.00039 Score=56.47 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++++|++|+|||||+++|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999753
No 458
>PRK12288 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.0034 Score=55.99 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred CCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE
Q 021534 103 DGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 181 (311)
Q Consensus 103 ~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (311)
.++|.+++|++..+.+..... .++..+ .. ...|.++|+||+|+... .... .+.. +.......+..+
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~----~~i~~VIVlNK~DL~~~--~~~~-~~~~-----~~~~y~~~g~~v 185 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVAC-ET----LGIEPLIVLNKIDLLDD--EGRA-FVNE-----QLDIYRNIGYRV 185 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh----cCCCEEEEEECccCCCc--HHHH-HHHH-----HHHHHHhCCCeE
Confidence 457999999988755544332 222222 22 22488999999998755 2211 1111 222333445555
Q ss_pred EEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 182 VLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 182 ~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+. +|+.++.|+++|++.|..
T Consensus 186 ~~------vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 186 LM------VSSHTGEGLEELEAALTG 205 (347)
T ss_pred EE------EeCCCCcCHHHHHHHHhh
Confidence 54 677777888888877654
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00045 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.++++|++|+|||||++.|.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999864
No 460
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.08 E-value=0.0006 Score=56.48 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999999964
No 461
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0026 Score=57.56 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=44.6
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccC--eEEEE
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISD--YMIVV 144 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~--~~ilv 144 (311)
++..+.||||+|--. .+..+...+...+. ...+|.|+||=.+- -..+ ..-+..+...+.+.... -=-++
T Consensus 465 ~gfDVvLiDTAGR~~---~~~~lm~~l~k~~~--~~~pd~i~~vgeal---vg~dsv~q~~~fn~al~~~~~~r~id~~~ 536 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMH---NNAPLMTSLAKLIK--VNKPDLILFVGEAL---VGNDSVDQLKKFNRALADHSTPRLIDGIL 536 (587)
T ss_pred cCCCEEEEecccccc---CChhHHHHHHHHHh--cCCCceEEEehhhh---hCcHHHHHHHHHHHHHhcCCCccccceEE
Confidence 455799999999432 23344555555543 46789999996542 1222 23333444444432211 12467
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|.+++
T Consensus 537 ltk~dtv~d 545 (587)
T KOG0781|consen 537 LTKFDTVDD 545 (587)
T ss_pred EEeccchhh
Confidence 999998765
No 462
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.07 E-value=0.00048 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|.|-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
No 463
>PRK03918 chromosome segregation protein; Provisional
Probab=97.06 E-value=0.28 Score=49.73 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999863
No 464
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.05 E-value=0.00071 Score=52.47 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35779999999999999999998653
No 465
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.04 E-value=0.00057 Score=56.84 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0003 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-++|.|++|+||||+++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999998766
No 467
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.04 E-value=0.00059 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+++|.+|+||||+.+.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998753
No 468
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00068 Score=57.17 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999864
No 469
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.03 E-value=0.00073 Score=56.12 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|+|-..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 35789999999999999999999643
No 470
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.03 E-value=0.0007 Score=56.39 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999964
No 471
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00064 Score=56.73 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|+|||||++.|.|..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999864
No 472
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.02 E-value=0.00074 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999964
No 473
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.01 E-value=0.00073 Score=55.74 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999964
No 474
>PRK01156 chromosome segregation protein; Provisional
Probab=97.01 E-value=0.32 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+++|++|+||||++.+|.
T Consensus 24 gi~~I~G~NGsGKSsileAI~ 44 (895)
T PRK01156 24 GINIITGKNGAGKSSIVDAIR 44 (895)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 466889999999999999874
No 475
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.00076 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
No 476
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.01 E-value=0.00065 Score=56.33 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|+|..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999964
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.01 E-value=0.00068 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999964
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00054 Score=57.65 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|+|||||+.+++|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999993
No 479
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.00 E-value=0.00082 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999865
No 480
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.00057 Score=54.67 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|.||+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 481
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.00 E-value=0.00055 Score=52.78 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|+||||||||+..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998743
No 482
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.00068 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||+++|.|--
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4677999999999999999999843
No 483
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.99 E-value=0.00065 Score=56.97 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34678999999999999999999865
No 484
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.078 Score=53.04 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
|-.+.+. +|||+.|+|||-+|.+++.
T Consensus 105 PFHksFt-aIvGPNGSGKSNVIDsmLF 130 (1293)
T KOG0996|consen 105 PFHKSFT-AIVGPNGSGKSNVIDSMLF 130 (1293)
T ss_pred CCCCCce-eeECCCCCCchHHHHHHHH
Confidence 3333444 8899999999999999854
No 485
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00083 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999964
No 486
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.97 E-value=0.001 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466888999999999999999754
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.97 E-value=0.00084 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999999976
No 488
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.97 E-value=0.00076 Score=56.54 Aligned_cols=26 Identities=46% Similarity=0.624 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-.++|+|++|+|||||++.|.|..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999964
No 489
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.97 E-value=0.00069 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|++|||||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3489999999999999999999864
No 490
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0052 Score=56.66 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-+|+++|.+||||||++|.|++-
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF 401 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRF 401 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999863
No 491
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.37 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+.++|+|++|+||||++.+|.
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3577999999999999999983
No 492
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.96 E-value=0.00086 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|+|||||++.|.|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999964
No 493
>PHA02518 ParA-like protein; Provisional
Probab=96.96 E-value=0.052 Score=44.66 Aligned_cols=68 Identities=9% Similarity=-0.040 Sum_probs=36.8
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCC-CccCeEEEEEe
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGK-KISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~-~~~~~~ilv~n 146 (311)
...+.||||||..+ ...... +..+|.+|.++..+ .+.-. ...+++.+...... .....+.++.|
T Consensus 76 ~~d~viiD~p~~~~---------~~~~~~----l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n 141 (211)
T PHA02518 76 GYDYVVVDGAPQDS---------ELARAA----LRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTDGLPKFAFIIS 141 (211)
T ss_pred cCCEEEEeCCCCcc---------HHHHHH----HHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCCCCceEEEEEe
Confidence 34789999999543 112222 33459999998877 33322 23344444432211 11234567778
Q ss_pred ccCC
Q 021534 147 GGDE 150 (311)
Q Consensus 147 k~D~ 150 (311)
+.+.
T Consensus 142 ~~~~ 145 (211)
T PHA02518 142 RAIK 145 (211)
T ss_pred ccCC
Confidence 7653
No 494
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.96 E-value=0.00089 Score=55.89 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999999999753
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.96 E-value=0.00068 Score=55.02 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|+|||||++.|.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999997653
No 496
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.96 E-value=0.00092 Score=54.91 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446889999999999999999999653
No 497
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00092 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++++|++|+|||||++.|.|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999999964
No 498
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.95 E-value=0.0079 Score=51.76 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=35.9
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-hHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-EEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
..+.||||||...... +. ..+..+|.+|+++..+ ...- ....+++.+.............+|+|++
T Consensus 116 yD~vIIDt~g~~~~~~--------~~----~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~ 182 (267)
T cd02032 116 YDVILFDVLGDVVCGG--------FA----APLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRT 182 (267)
T ss_pred CCEEEEeCCCCccccc--------ch----hhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCC
Confidence 4578888877432110 11 1134569999998776 3332 2345555555432111112345789998
Q ss_pred CC
Q 021534 149 DE 150 (311)
Q Consensus 149 D~ 150 (311)
|.
T Consensus 183 ~~ 184 (267)
T cd02032 183 DK 184 (267)
T ss_pred CH
Confidence 83
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.94 E-value=0.35 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++++|+||+||||++..|...
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999988754
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.94 E-value=0.00095 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+.-.++|+|++|+|||||++.|.|-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999999864
Done!