Query 021534
Match_columns 311
No_of_seqs 255 out of 2659
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 05:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 8.8E-32 3E-36 228.0 22.0 207 14-226 15-223 (247)
2 3lxx_A GTPase IMAP family memb 100.0 3.7E-31 1.3E-35 223.4 20.5 206 15-226 24-229 (239)
3 2xtp_A GTPase IMAP family memb 100.0 1.9E-29 6.4E-34 215.6 25.5 206 15-226 17-223 (260)
4 4dhe_A Probable GTP-binding pr 99.9 1.5E-23 5E-28 174.6 14.9 178 16-211 25-211 (223)
5 3iev_A GTP-binding protein ERA 99.9 3E-23 1E-27 181.1 16.6 182 14-220 4-190 (308)
6 1svi_A GTP-binding protein YSX 99.9 3.6E-22 1.2E-26 162.5 18.4 171 16-209 19-193 (195)
7 1wf3_A GTP-binding protein; GT 99.9 2.9E-22 1E-26 173.9 18.2 173 20-220 7-181 (301)
8 3pqc_A Probable GTP-binding pr 99.9 1.8E-21 6E-26 158.3 20.1 174 15-211 18-194 (195)
9 2qu8_A Putative nucleolar GTP- 99.9 1.6E-21 5.4E-26 163.0 18.4 181 14-211 23-205 (228)
10 1h65_A Chloroplast outer envel 99.9 2.9E-21 9.9E-26 165.6 18.3 198 18-220 37-254 (270)
11 3def_A T7I23.11 protein; chlor 99.9 2.1E-21 7.3E-26 165.7 16.3 155 18-177 34-189 (262)
12 3t5d_A Septin-7; GTP-binding p 99.9 1.1E-21 3.8E-26 168.5 14.1 173 19-210 7-203 (274)
13 2gf9_A RAS-related protein RAB 99.9 2.1E-21 7.3E-26 157.4 13.8 170 12-211 14-185 (189)
14 3i8s_A Ferrous iron transport 99.9 1.8E-21 6.2E-26 167.0 14.1 179 20-225 3-185 (274)
15 3k53_A Ferrous iron transport 99.9 1.2E-20 4.3E-25 161.7 18.8 165 20-212 3-167 (271)
16 2fg5_A RAB-22B, RAS-related pr 99.9 1.5E-21 5E-26 158.8 11.4 170 12-210 15-185 (192)
17 3iby_A Ferrous iron transport 99.9 3.8E-21 1.3E-25 163.2 14.0 161 21-208 2-164 (256)
18 3tw8_B RAS-related protein RAB 99.9 3.4E-21 1.1E-25 154.6 13.0 162 18-211 7-171 (181)
19 1z08_A RAS-related protein RAB 99.9 9E-21 3.1E-25 150.6 14.4 161 19-210 5-168 (170)
20 2lkc_A Translation initiation 99.9 2E-21 6.9E-26 155.6 10.7 164 18-211 6-171 (178)
21 4bas_A ADP-ribosylation factor 99.9 1.6E-20 5.6E-25 153.1 16.0 175 12-212 9-190 (199)
22 1z0f_A RAB14, member RAS oncog 99.9 4.9E-21 1.7E-25 153.4 12.5 162 17-209 12-176 (179)
23 2dyk_A GTP-binding protein; GT 99.9 7.7E-21 2.6E-25 149.6 13.5 158 21-209 2-160 (161)
24 2h57_A ADP-ribosylation factor 99.9 2.5E-21 8.4E-26 157.1 10.4 163 15-209 16-185 (190)
25 1z0j_A RAB-22, RAS-related pro 99.8 2.7E-21 9.3E-26 153.5 10.3 161 19-209 5-167 (170)
26 3tkl_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 153.2 14.6 164 17-211 13-179 (196)
27 3a1s_A Iron(II) transport prot 99.8 9E-21 3.1E-25 161.2 13.6 163 19-210 4-166 (258)
28 1r2q_A RAS-related protein RAB 99.8 5.3E-21 1.8E-25 151.7 11.2 161 19-209 5-167 (170)
29 2il1_A RAB12; G-protein, GDP, 99.8 1.8E-20 6E-25 152.4 14.5 165 15-210 21-189 (192)
30 3clv_A RAB5 protein, putative; 99.8 2.6E-20 8.9E-25 152.3 15.5 160 18-211 5-204 (208)
31 2bme_A RAB4A, RAS-related prot 99.8 4.2E-20 1.4E-24 149.1 16.4 162 18-210 8-172 (186)
32 2oil_A CATX-8, RAS-related pro 99.8 7.9E-21 2.7E-25 154.5 12.0 163 18-210 23-187 (193)
33 2g6b_A RAS-related protein RAB 99.8 5.3E-20 1.8E-24 147.6 16.7 164 18-211 8-174 (180)
34 2ew1_A RAS-related protein RAB 99.8 4.7E-20 1.6E-24 151.1 16.7 162 19-211 25-189 (201)
35 1upt_A ARL1, ADP-ribosylation 99.8 1.2E-20 4.1E-25 150.0 12.7 161 19-211 6-169 (171)
36 2bcg_Y Protein YP2, GTP-bindin 99.8 3.1E-20 1.1E-24 152.5 15.5 163 18-211 6-171 (206)
37 2a5j_A RAS-related protein RAB 99.8 7.9E-21 2.7E-25 154.3 11.7 163 17-210 18-183 (191)
38 1zbd_A Rabphilin-3A; G protein 99.8 2.4E-20 8.1E-25 152.8 14.6 161 19-210 7-170 (203)
39 2gj8_A MNME, tRNA modification 99.8 4.8E-21 1.6E-25 153.1 10.0 161 19-209 3-164 (172)
40 2efe_B Small GTP-binding prote 99.8 1.7E-20 5.8E-25 150.6 13.3 163 17-210 9-174 (181)
41 1mky_A Probable GTP-binding pr 99.8 1.1E-20 3.6E-25 172.9 13.4 164 21-211 2-166 (439)
42 1ek0_A Protein (GTP-binding pr 99.8 4.7E-21 1.6E-25 152.1 9.6 161 20-209 3-167 (170)
43 2hup_A RAS-related protein RAB 99.8 5E-20 1.7E-24 150.9 15.6 164 18-212 27-194 (201)
44 1ksh_A ARF-like protein 2; sma 99.8 4.7E-20 1.6E-24 148.9 14.8 164 18-211 16-180 (186)
45 2fu5_C RAS-related protein RAB 99.8 1.9E-20 6.5E-25 150.8 12.4 161 19-210 7-170 (183)
46 2a9k_A RAS-related protein RAL 99.8 7.4E-20 2.5E-24 147.5 15.9 164 17-211 15-181 (187)
47 1g16_A RAS-related protein SEC 99.8 1.5E-20 5.1E-25 149.2 11.5 161 19-211 2-165 (170)
48 3t5g_A GTP-binding protein RHE 99.8 3.9E-20 1.3E-24 148.7 14.0 163 18-211 4-169 (181)
49 3q72_A GTP-binding protein RAD 99.8 5.1E-20 1.8E-24 145.7 14.4 160 20-211 2-164 (166)
50 2hjg_A GTP-binding protein ENG 99.8 2.6E-20 9E-25 170.1 14.5 178 18-214 173-352 (436)
51 3oes_A GTPase rhebl1; small GT 99.8 2.4E-20 8.4E-25 152.7 12.8 167 15-211 19-187 (201)
52 3llu_A RAS-related GTP-binding 99.8 1.8E-20 6.3E-25 152.8 11.8 179 12-208 12-194 (196)
53 2erx_A GTP-binding protein DI- 99.8 3.5E-20 1.2E-24 147.3 13.1 161 19-209 2-165 (172)
54 1kao_A RAP2A; GTP-binding prot 99.8 1.3E-19 4.3E-24 143.2 16.2 160 20-210 3-165 (167)
55 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.6E-19 5.4E-24 144.4 16.9 163 18-210 5-173 (177)
56 2nzj_A GTP-binding protein REM 99.8 1E-19 3.6E-24 145.1 15.8 164 18-210 2-168 (175)
57 2q3h_A RAS homolog gene family 99.8 6.5E-20 2.2E-24 150.0 14.9 184 2-211 2-195 (201)
58 4dcu_A GTP-binding protein ENG 99.8 4.3E-20 1.5E-24 169.7 15.3 182 17-217 192-375 (456)
59 3bc1_A RAS-related protein RAB 99.8 1.7E-19 5.7E-24 146.3 17.2 163 18-210 9-184 (195)
60 1zd9_A ADP-ribosylation factor 99.8 2.2E-20 7.5E-25 151.3 11.9 164 16-209 18-183 (188)
61 2p5s_A RAS and EF-hand domain 99.8 5.9E-21 2E-25 156.1 8.5 169 17-210 25-196 (199)
62 3reg_A RHO-like small GTPase; 99.8 2.2E-20 7.5E-25 152.0 11.8 164 16-211 19-188 (194)
63 3cph_A RAS-related protein SEC 99.8 2.9E-20 1E-24 153.3 12.6 164 16-211 16-182 (213)
64 2h17_A ADP-ribosylation factor 99.8 7.2E-21 2.5E-25 153.2 8.6 163 15-207 16-179 (181)
65 2o52_A RAS-related protein RAB 99.8 5.7E-20 2E-24 150.4 14.0 162 18-210 23-187 (200)
66 3dz8_A RAS-related protein RAB 99.8 2E-20 6.8E-25 151.9 11.2 165 18-211 21-186 (191)
67 1z06_A RAS-related protein RAB 99.8 7.8E-20 2.7E-24 148.1 14.6 166 14-209 14-186 (189)
68 2hxs_A RAB-26, RAS-related pro 99.8 2.3E-20 7.8E-25 149.5 11.2 165 18-211 4-173 (178)
69 2j69_A Bacterial dynamin-like 99.8 1.6E-19 5.5E-24 173.2 18.4 122 19-153 68-245 (695)
70 2bov_A RAla, RAS-related prote 99.8 1.9E-19 6.3E-24 147.7 16.3 164 16-210 10-176 (206)
71 2y8e_A RAB-protein 6, GH09086P 99.8 3.5E-20 1.2E-24 148.3 11.7 160 19-209 13-175 (179)
72 4dsu_A GTPase KRAS, isoform 2B 99.8 9.3E-20 3.2E-24 147.2 14.3 160 19-210 3-165 (189)
73 1u8z_A RAS-related protein RAL 99.8 1E-19 3.5E-24 143.9 14.2 161 19-210 3-166 (168)
74 1z2a_A RAS-related protein RAB 99.8 3.9E-20 1.3E-24 146.5 11.8 159 19-209 4-165 (168)
75 1r8s_A ADP-ribosylation factor 99.8 3E-20 1E-24 146.7 10.6 159 21-210 1-161 (164)
76 2j1l_A RHO-related GTP-binding 99.8 2.4E-19 8.3E-24 148.2 16.4 169 18-212 32-210 (214)
77 2atx_A Small GTP binding prote 99.8 1.4E-19 4.9E-24 147.1 14.0 168 16-209 14-191 (194)
78 2gf0_A GTP-binding protein DI- 99.8 6.8E-20 2.3E-24 149.4 12.2 163 18-211 6-171 (199)
79 2wji_A Ferrous iron transport 99.8 1E-19 3.6E-24 144.2 12.9 161 20-209 3-163 (165)
80 2fn4_A P23, RAS-related protei 99.8 1.5E-19 5.2E-24 144.8 13.9 165 16-211 5-172 (181)
81 1ky3_A GTP-binding protein YPT 99.8 1.4E-19 4.7E-24 145.3 13.5 166 18-210 6-177 (182)
82 4dkx_A RAS-related protein RAB 99.8 6.5E-20 2.2E-24 151.6 11.8 161 19-210 12-175 (216)
83 3b1v_A Ferrous iron uptake tra 99.8 8.6E-20 2.9E-24 156.0 13.0 161 20-210 3-163 (272)
84 3con_A GTPase NRAS; structural 99.8 5.4E-19 1.9E-23 143.1 16.9 164 17-212 18-184 (190)
85 2yc2_C IFT27, small RAB-relate 99.8 9.5E-20 3.2E-24 149.6 12.2 164 18-210 18-191 (208)
86 1c1y_A RAS-related protein RAP 99.8 1.5E-19 5.2E-24 142.9 12.9 159 20-209 3-165 (167)
87 1zj6_A ADP-ribosylation factor 99.8 8.5E-20 2.9E-24 147.6 11.6 163 18-211 14-178 (187)
88 2f7s_A C25KG, RAS-related prot 99.8 2E-19 6.9E-24 148.9 14.1 163 18-210 23-198 (217)
89 3q85_A GTP-binding protein REM 99.8 3.5E-19 1.2E-23 141.3 14.8 163 20-211 2-167 (169)
90 2fh5_B SR-beta, signal recogni 99.8 2.2E-19 7.5E-24 148.4 14.0 119 18-153 5-130 (214)
91 3cbq_A GTP-binding protein REM 99.8 2.7E-19 9.1E-24 145.9 14.2 173 10-211 13-188 (195)
92 3gee_A MNME, tRNA modification 99.8 9.5E-19 3.3E-23 160.5 19.4 164 20-210 233-397 (476)
93 3kkq_A RAS-related protein M-R 99.8 2.3E-19 8E-24 144.3 13.6 166 14-210 12-181 (183)
94 3cpj_B GTP-binding protein YPT 99.8 1.3E-19 4.3E-24 150.9 12.3 163 18-211 11-176 (223)
95 2gco_A H9, RHO-related GTP-bin 99.8 2.3E-19 7.8E-24 146.9 13.5 167 17-209 22-198 (201)
96 1vg8_A RAS-related protein RAB 99.8 2.8E-19 9.7E-24 146.7 14.0 163 18-210 6-174 (207)
97 1x3s_A RAS-related protein RAB 99.8 8.9E-20 3.1E-24 148.2 10.8 163 19-211 14-178 (195)
98 3ihw_A Centg3; RAS, centaurin, 99.8 2.7E-19 9.1E-24 144.5 13.3 165 12-211 12-180 (184)
99 3q3j_B RHO-related GTP-binding 99.8 3.9E-19 1.4E-23 147.0 14.7 172 15-211 22-203 (214)
100 3t1o_A Gliding protein MGLA; G 99.8 3.1E-19 1.1E-23 145.1 13.8 166 18-211 12-192 (198)
101 1ega_A Protein (GTP-binding pr 99.8 2E-19 6.7E-24 156.3 13.2 173 20-219 8-182 (301)
102 1mh1_A RAC1; GTP-binding, GTPa 99.8 2E-19 6.9E-24 144.9 12.3 167 19-211 4-180 (186)
103 4djt_A GTP-binding nuclear pro 99.8 2.8E-20 9.6E-25 154.2 7.3 165 18-212 9-176 (218)
104 2x77_A ADP-ribosylation factor 99.8 3.3E-20 1.1E-24 150.2 7.2 163 18-211 20-184 (189)
105 4dcu_A GTP-binding protein ENG 99.8 2.7E-20 9.1E-25 171.0 7.3 163 19-210 22-184 (456)
106 4gzl_A RAS-related C3 botulinu 99.8 2.1E-19 7.2E-24 147.5 11.9 166 17-208 27-202 (204)
107 2ce2_X GTPase HRAS; signaling 99.8 5.1E-19 1.7E-23 139.5 13.4 159 20-210 3-164 (166)
108 2hjg_A GTP-binding protein ENG 99.8 5.3E-20 1.8E-24 168.1 8.5 161 21-211 4-165 (436)
109 2wjg_A FEOB, ferrous iron tran 99.8 6.5E-19 2.2E-23 142.4 13.9 164 19-211 6-169 (188)
110 1moz_A ARL1, ADP-ribosylation 99.8 1.3E-19 4.5E-24 145.7 9.8 163 18-211 16-180 (183)
111 1jwy_B Dynamin A GTPase domain 99.8 9.9E-19 3.4E-23 153.1 16.1 177 18-211 22-262 (315)
112 2b6h_A ADP-ribosylation factor 99.8 9.3E-20 3.2E-24 148.2 8.8 162 17-209 26-189 (192)
113 1fzq_A ADP-ribosylation factor 99.8 1.5E-19 5E-24 145.6 9.7 161 18-209 14-176 (181)
114 2fv8_A H6, RHO-related GTP-bin 99.8 3.5E-19 1.2E-23 146.4 12.0 166 19-210 24-199 (207)
115 3gj0_A GTP-binding nuclear pro 99.8 3.5E-20 1.2E-24 154.0 6.1 164 16-211 11-175 (221)
116 2e87_A Hypothetical protein PH 99.8 5.3E-18 1.8E-22 150.9 19.8 168 18-211 165-336 (357)
117 2iwr_A Centaurin gamma 1; ANK 99.8 5.9E-19 2E-23 141.3 12.1 159 18-210 5-168 (178)
118 1m2o_B GTP-binding protein SAR 99.8 4.5E-19 1.5E-23 143.9 11.3 165 18-207 21-188 (190)
119 1m7b_A RND3/RHOE small GTP-bin 99.8 1.6E-18 5.6E-23 139.7 14.2 167 18-209 5-181 (184)
120 3l0i_B RAS-related protein RAB 99.8 6.6E-21 2.3E-25 155.8 -0.0 161 18-209 31-194 (199)
121 2atv_A RERG, RAS-like estrogen 99.8 1.3E-18 4.3E-23 141.8 13.5 164 16-211 24-191 (196)
122 3geh_A MNME, tRNA modification 99.8 2.8E-19 9.6E-24 163.4 9.9 161 20-211 224-384 (462)
123 3c5c_A RAS-like protein 12; GD 99.8 1.3E-18 4.6E-23 140.7 12.7 164 14-209 15-184 (187)
124 1wb1_A Translation elongation 99.8 2.2E-18 7.5E-23 158.8 15.8 163 19-211 18-189 (482)
125 3r7w_A Gtpase1, GTP-binding pr 99.8 2.8E-18 9.5E-23 149.6 15.6 172 19-207 2-177 (307)
126 1gwn_A RHO-related GTP-binding 99.8 2.1E-18 7.2E-23 141.6 14.0 167 18-209 26-202 (205)
127 3bwd_D RAC-like GTP-binding pr 99.8 3.9E-19 1.3E-23 142.8 9.3 166 18-209 6-179 (182)
128 1xzp_A Probable tRNA modificat 99.8 2E-18 6.8E-23 158.4 15.2 159 21-209 244-403 (482)
129 1f6b_A SAR1; gtpases, N-termin 99.8 8.3E-19 2.8E-23 143.3 11.1 166 18-207 23-195 (198)
130 1mky_A Probable GTP-binding pr 99.8 1.9E-18 6.6E-23 157.9 14.6 179 18-214 178-358 (439)
131 2j0v_A RAC-like GTP-binding pr 99.8 1.4E-18 4.8E-23 143.3 12.1 168 18-211 7-180 (212)
132 2cxx_A Probable GTP-binding pr 99.8 5.5E-18 1.9E-22 136.9 15.0 161 21-212 2-185 (190)
133 2qag_C Septin-7; cell cycle, c 99.8 5.3E-19 1.8E-23 159.2 8.6 172 17-207 28-223 (418)
134 2aka_B Dynamin-1; fusion prote 99.8 3.9E-18 1.3E-22 148.1 13.3 176 16-208 22-250 (299)
135 3o47_A ADP-ribosylation factor 99.8 9.8E-19 3.4E-23 153.8 9.3 162 18-210 163-326 (329)
136 2qtf_A Protein HFLX, GTP-bindi 99.8 2E-17 6.7E-22 147.0 17.6 170 20-211 179-354 (364)
137 1lnz_A SPO0B-associated GTP-bi 99.8 7.1E-19 2.4E-23 154.8 7.8 175 21-218 159-338 (342)
138 1s0u_A EIF-2-gamma, translatio 99.8 2.6E-17 9E-22 149.0 18.3 166 17-210 5-197 (408)
139 3qq5_A Small GTP-binding prote 99.8 2.8E-19 9.4E-24 161.4 4.9 166 16-211 30-196 (423)
140 2g3y_A GTP-binding protein GEM 99.8 2E-17 6.9E-22 136.2 15.7 165 17-210 34-202 (211)
141 1kk1_A EIF2gamma; initiation o 99.8 1.6E-17 5.3E-22 150.6 16.2 166 18-211 8-200 (410)
142 3j2k_7 ERF3, eukaryotic polype 99.8 1.4E-17 4.8E-22 151.9 15.6 162 15-203 12-217 (439)
143 2c78_A Elongation factor TU-A; 99.7 1.1E-17 3.9E-22 151.3 14.5 166 16-210 7-211 (405)
144 3t34_A Dynamin-related protein 99.7 5.9E-18 2E-22 150.9 12.3 133 18-153 32-218 (360)
145 3sjy_A Translation initiation 99.7 1E-17 3.6E-22 151.4 14.1 167 17-211 5-192 (403)
146 3lvq_E ARF-GAP with SH3 domain 99.7 2.5E-18 8.7E-23 159.8 9.6 164 18-211 320-484 (497)
147 1zun_B Sulfate adenylate trans 99.7 9.5E-18 3.2E-22 153.1 12.9 157 17-200 21-213 (434)
148 2zej_A Dardarin, leucine-rich 99.7 1E-17 3.5E-22 135.1 11.6 165 20-211 2-178 (184)
149 3zvr_A Dynamin-1; hydrolase, D 99.7 3.9E-17 1.3E-21 155.8 17.4 173 18-207 49-274 (772)
150 3tr5_A RF-3, peptide chain rel 99.7 2.4E-18 8.1E-23 159.8 8.1 118 19-153 12-149 (528)
151 1d2e_A Elongation factor TU (E 99.7 7.4E-17 2.5E-21 145.5 17.4 164 19-211 2-195 (397)
152 3p26_A Elongation factor 1 alp 99.7 1.2E-17 4.2E-22 154.3 12.3 155 19-200 32-227 (483)
153 2qag_A Septin-2, protein NEDD5 99.7 1.5E-17 5E-22 148.0 12.3 172 19-209 36-235 (361)
154 2x2e_A Dynamin-1; nitration, h 99.7 2E-16 6.7E-21 140.6 18.9 174 18-207 29-254 (353)
155 3th5_A RAS-related C3 botulinu 99.6 2.5E-19 8.6E-24 146.9 0.0 166 17-208 27-202 (204)
156 3izq_1 HBS1P, elongation facto 99.7 1.6E-17 5.5E-22 156.9 12.3 158 17-201 164-362 (611)
157 1pui_A ENGB, probable GTP-bind 99.7 1.2E-16 4.2E-21 131.3 15.9 175 17-211 23-199 (210)
158 2qag_B Septin-6, protein NEDD5 99.7 2.3E-18 8E-23 154.3 5.5 151 20-185 42-216 (427)
159 3izy_P Translation initiation 99.7 1.7E-19 6E-24 166.8 -2.4 164 20-210 4-167 (537)
160 2wkq_A NPH1-1, RAS-related C3 99.7 5.8E-17 2E-21 142.6 13.5 165 19-209 154-328 (332)
161 2cjw_A GTP-binding protein GEM 99.7 7.1E-17 2.4E-21 131.1 11.8 163 19-210 5-171 (192)
162 2elf_A Protein translation elo 99.7 3.7E-17 1.3E-21 145.6 10.7 150 22-211 23-180 (370)
163 1jny_A EF-1-alpha, elongation 99.7 4.5E-17 1.5E-21 148.6 11.5 155 18-199 4-201 (435)
164 2f9l_A RAB11B, member RAS onco 99.7 2E-16 6.9E-21 129.1 13.3 160 20-210 5-167 (199)
165 1f60_A Elongation factor EEF1A 99.7 2.3E-17 8E-22 151.2 8.2 154 19-199 6-200 (458)
166 1g7s_A Translation initiation 99.7 7E-17 2.4E-21 151.7 11.4 115 20-152 5-136 (594)
167 1zo1_I IF2, translation initia 99.7 1.2E-18 4.2E-23 159.9 -1.6 159 19-207 3-163 (501)
168 2ywe_A GTP-binding protein LEP 99.7 4.9E-17 1.7E-21 152.3 9.2 161 18-211 4-184 (600)
169 3cb4_D GTP-binding protein LEP 99.7 7.1E-17 2.4E-21 151.5 10.1 163 19-211 3-182 (599)
170 1nrj_B SR-beta, signal recogni 99.7 7.2E-17 2.5E-21 133.5 8.4 123 17-153 9-135 (218)
171 1wxq_A GTP-binding protein; st 99.7 6.2E-17 2.1E-21 145.3 8.4 90 21-116 1-113 (397)
172 2ged_A SR-beta, signal recogni 99.7 3.2E-16 1.1E-20 127.0 11.9 128 17-160 45-176 (193)
173 3dpu_A RAB family protein; roc 99.7 1.3E-16 4.5E-21 149.3 9.8 164 17-211 38-208 (535)
174 4a9a_A Ribosome-interacting GT 99.7 4.4E-16 1.5E-20 137.9 12.3 127 16-151 68-195 (376)
175 1oix_A RAS-related protein RAB 99.7 1.1E-15 3.8E-20 123.9 13.6 160 19-209 28-190 (191)
176 3avx_A Elongation factor TS, e 99.7 1.6E-15 5.4E-20 149.0 16.9 166 16-210 292-485 (1289)
177 3mca_A HBS1, elongation factor 99.7 7E-18 2.4E-22 158.9 -0.5 167 17-210 174-396 (592)
178 2qpt_A EH domain-containing pr 99.6 6E-16 2E-20 144.6 9.5 137 17-163 62-241 (550)
179 1dar_A EF-G, elongation factor 99.6 5.4E-16 1.8E-20 148.7 9.4 122 15-153 7-144 (691)
180 1r5b_A Eukaryotic peptide chai 99.6 6.1E-16 2.1E-20 142.1 8.0 157 18-201 41-242 (467)
181 3c5h_A Glucocorticoid receptor 99.6 2E-15 6.7E-20 128.1 9.9 88 104-209 162-253 (255)
182 1udx_A The GTP-binding protein 99.6 9.4E-15 3.2E-19 131.5 14.1 169 21-213 158-327 (416)
183 3r7w_B Gtpase2, GTP-binding pr 99.6 1.4E-15 4.7E-20 131.7 7.4 121 22-153 1-121 (331)
184 2rdo_7 EF-G, elongation factor 99.6 1.4E-14 4.8E-19 139.1 15.1 120 17-153 7-149 (704)
185 3vqt_A RF-3, peptide chain rel 99.6 1.1E-14 3.9E-19 135.8 13.1 118 19-153 30-167 (548)
186 3p32_A Probable GTPase RV1496/ 99.6 2.8E-14 9.7E-19 126.7 14.3 108 68-211 170-284 (355)
187 2h5e_A Peptide chain release f 99.6 7.9E-15 2.7E-19 136.3 11.0 119 18-153 11-149 (529)
188 2xex_A Elongation factor G; GT 99.6 4.8E-15 1.6E-19 142.2 9.7 120 17-153 7-142 (693)
189 2qnr_A Septin-2, protein NEDD5 99.6 2.1E-14 7.1E-19 124.5 12.9 173 18-210 16-213 (301)
190 2dy1_A Elongation factor G; tr 99.6 1.1E-14 3.9E-19 139.1 11.6 116 19-151 8-139 (665)
191 2www_A Methylmalonic aciduria 99.6 4.4E-14 1.5E-18 125.0 13.5 108 68-211 165-279 (349)
192 1f5n_A Interferon-induced guan 99.5 2.9E-11 9.9E-16 112.9 30.0 108 18-131 36-147 (592)
193 2p67_A LAO/AO transport system 99.5 3.3E-13 1.1E-17 119.1 16.1 107 68-210 147-260 (341)
194 3sop_A Neuronal-specific septi 99.5 5.9E-14 2E-18 119.6 10.2 153 20-185 2-180 (270)
195 3j25_A Tetracycline resistance 99.5 8.2E-15 2.8E-19 139.4 3.1 117 20-153 2-134 (638)
196 1jal_A YCHF protein; nucleotid 99.5 7.6E-14 2.6E-18 122.9 8.8 89 21-116 3-108 (363)
197 2dby_A GTP-binding protein; GD 99.4 3.3E-13 1.1E-17 119.6 10.8 90 21-116 2-111 (368)
198 1n0u_A EF-2, elongation factor 99.4 8.9E-14 3E-18 136.0 7.5 118 18-151 17-163 (842)
199 4fn5_A EF-G 1, elongation fact 99.4 1.5E-12 5.2E-17 125.4 13.1 122 16-153 9-152 (709)
200 1yrb_A ATP(GTP)binding protein 99.4 2E-12 6.8E-17 109.8 11.0 182 13-211 7-257 (262)
201 3h2y_A GTPase family protein; 99.4 4.9E-14 1.7E-18 125.4 0.9 124 20-153 160-288 (368)
202 3ec1_A YQEH GTPase; atnos1, at 99.4 3.7E-14 1.3E-18 126.4 -0.9 123 20-153 162-289 (369)
203 1zcb_A G alpha I/13; GTP-bindi 99.3 3.4E-11 1.2E-15 106.6 14.7 84 56-151 188-281 (362)
204 2qm8_A GTPase/ATPase; G protei 99.3 2.2E-11 7.5E-16 107.1 13.2 107 68-210 146-260 (337)
205 2wsm_A Hydrogenase expression/ 99.3 5E-12 1.7E-16 104.5 7.8 152 19-210 29-213 (221)
206 2j37_W Signal recognition part 99.3 3E-11 1E-15 111.0 12.7 164 18-208 99-310 (504)
207 1cip_A Protein (guanine nucleo 99.2 6.7E-11 2.3E-15 104.3 12.5 140 56-211 180-344 (353)
208 2ohf_A Protein OLA1, GTP-bindi 99.2 1E-11 3.4E-16 110.5 6.9 94 16-115 18-127 (396)
209 3ohm_A Guanine nucleotide-bind 99.2 3E-10 1E-14 98.7 15.0 141 55-211 153-318 (327)
210 3szr_A Interferon-induced GTP- 99.2 1.2E-10 4.1E-15 110.2 13.0 80 70-153 147-229 (608)
211 4fid_A G protein alpha subunit 99.2 3.1E-10 1.1E-14 99.1 13.1 86 55-152 147-242 (340)
212 2xtz_A Guanine nucleotide-bind 99.2 4.3E-10 1.5E-14 99.2 13.4 71 70-151 183-263 (354)
213 1tq4_A IIGP1, interferon-induc 99.1 7.3E-10 2.5E-14 99.4 14.8 168 20-211 69-253 (413)
214 1puj_A YLQF, conserved hypothe 99.1 9E-11 3.1E-15 100.5 7.7 67 18-89 118-184 (282)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.6E-10 5.6E-15 102.9 8.2 96 14-115 14-126 (392)
216 1azs_C GS-alpha; complex (lyas 99.0 2.4E-09 8.1E-14 95.6 12.3 84 56-151 204-297 (402)
217 2hf9_A Probable hydrogenase ni 99.0 4.1E-10 1.4E-14 93.2 5.5 25 19-43 37-61 (226)
218 3cnl_A YLQF, putative uncharac 98.9 6.4E-10 2.2E-14 94.2 5.2 63 21-88 100-163 (262)
219 3dm5_A SRP54, signal recogniti 98.9 6E-08 2.1E-12 87.4 16.4 122 19-153 99-254 (443)
220 3q5d_A Atlastin-1; G protein, 98.8 1.9E-08 6.5E-13 90.9 8.6 108 18-131 65-195 (447)
221 2v3c_C SRP54, signal recogniti 98.7 2.9E-08 9.8E-13 89.8 8.7 121 20-153 99-253 (432)
222 3kl4_A SRP54, signal recogniti 98.7 2.5E-07 8.5E-12 83.4 13.1 124 19-153 96-253 (433)
223 1rj9_A FTSY, signal recognitio 98.4 4.2E-06 1.5E-10 72.1 14.3 127 19-153 101-262 (304)
224 3e70_C DPA, signal recognition 98.4 4.4E-07 1.5E-11 79.1 7.4 124 18-153 127-283 (328)
225 1j8m_F SRP54, signal recogniti 98.4 2.1E-06 7.2E-11 73.8 11.1 123 20-153 98-254 (297)
226 2xxa_A Signal recognition part 98.4 3.5E-06 1.2E-10 76.2 13.0 124 18-153 98-255 (433)
227 2yhs_A FTSY, cell division pro 98.4 3.6E-07 1.2E-11 83.2 6.2 125 18-152 291-452 (503)
228 4ido_A Atlastin-1; GTPase, GTP 98.4 5.1E-06 1.7E-10 74.8 13.2 125 18-149 65-220 (457)
229 3l82_B F-box only protein 4; T 98.3 9.4E-07 3.2E-11 71.0 7.2 106 92-210 113-222 (227)
230 1vma_A Cell division protein F 98.3 1.5E-05 5.2E-10 68.7 13.4 125 19-153 103-264 (306)
231 1t9h_A YLOQ, probable GTPase E 98.3 2.8E-07 9.6E-12 79.4 2.4 59 20-83 173-237 (307)
232 2og2_A Putative signal recogni 98.1 3.2E-05 1.1E-09 68.0 12.7 125 19-153 156-318 (359)
233 2px0_A Flagellar biosynthesis 98.1 4.8E-06 1.6E-10 71.6 7.3 122 19-153 104-254 (296)
234 1zu4_A FTSY; GTPase, signal re 98.1 2.4E-05 8.1E-10 67.9 11.6 126 18-153 103-269 (320)
235 2ffh_A Protein (FFH); SRP54, s 98.1 1E-05 3.5E-10 72.7 9.3 123 19-153 97-252 (425)
236 2rcn_A Probable GTPase ENGC; Y 98.1 1.8E-06 6.3E-11 75.8 4.1 58 21-82 216-280 (358)
237 3b9q_A Chloroplast SRP recepto 98.1 3.2E-05 1.1E-09 66.5 11.9 25 19-43 99-123 (302)
238 1u0l_A Probable GTPase ENGC; p 98.0 8E-06 2.8E-10 70.4 7.0 102 70-206 63-168 (301)
239 2yv5_A YJEQ protein; hydrolase 98.0 7.2E-06 2.5E-10 70.7 6.3 58 20-82 165-228 (302)
240 1u0l_A Probable GTPase ENGC; p 98.0 6.3E-06 2.2E-10 71.1 4.8 59 21-83 170-234 (301)
241 1ls1_A Signal recognition part 97.9 3.3E-05 1.1E-09 66.3 8.2 123 19-153 97-252 (295)
242 3h2y_A GTPase family protein; 97.8 2.9E-05 1E-09 68.8 7.4 99 92-209 57-158 (368)
243 1puj_A YLQF, conserved hypothe 97.8 3.4E-05 1.2E-09 65.7 7.2 91 96-210 15-105 (282)
244 3ec1_A YQEH GTPase; atnos1, at 97.7 2.7E-05 9.4E-10 69.0 5.2 99 93-210 60-161 (369)
245 2yv5_A YJEQ protein; hydrolase 97.6 0.00013 4.4E-09 62.8 7.9 85 101-204 76-162 (302)
246 3ney_A 55 kDa erythrocyte memb 97.6 5.8E-06 2E-10 66.4 -0.9 26 19-44 18-43 (197)
247 4dzz_A Plasmid partitioning pr 97.5 0.001 3.4E-08 53.4 11.6 69 69-151 75-143 (206)
248 3l2o_B F-box only protein 4; s 97.5 3.5E-05 1.2E-09 65.0 1.9 105 93-210 199-307 (312)
249 1ye8_A Protein THEP1, hypothet 97.4 5.5E-05 1.9E-09 59.8 2.8 23 22-44 2-24 (178)
250 1lvg_A Guanylate kinase, GMP k 97.4 5.3E-05 1.8E-09 61.0 2.4 23 21-43 5-27 (198)
251 1kgd_A CASK, peripheral plasma 97.4 9E-05 3.1E-09 58.6 3.0 23 21-43 6-28 (180)
252 1znw_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 59.4 2.9 25 20-44 20-44 (207)
253 3tif_A Uncharacterized ABC tra 97.3 0.00015 5.3E-09 59.9 3.7 25 21-45 32-56 (235)
254 2pcj_A ABC transporter, lipopr 97.3 0.00014 4.8E-09 59.7 3.2 24 21-44 31-54 (224)
255 4b4t_L 26S protease subunit RP 97.2 0.0019 6.3E-08 58.2 10.6 23 21-43 216-238 (437)
256 3tr0_A Guanylate kinase, GMP k 97.2 0.00014 4.9E-09 58.4 3.1 23 21-43 8-30 (205)
257 1zp6_A Hypothetical protein AT 97.2 0.00019 6.5E-09 57.1 3.8 23 21-43 10-32 (191)
258 1z6g_A Guanylate kinase; struc 97.2 0.00012 4.2E-09 59.8 2.6 24 20-43 23-46 (218)
259 1s96_A Guanylate kinase, GMP k 97.2 0.00014 4.9E-09 59.4 3.0 25 20-44 16-40 (219)
260 3c8u_A Fructokinase; YP_612366 97.2 0.00014 4.7E-09 59.0 2.8 27 18-44 20-46 (208)
261 3a00_A Guanylate kinase, GMP k 97.2 0.00012 4E-09 58.2 2.4 23 22-44 3-25 (186)
262 2onk_A Molybdate/tungstate ABC 97.2 0.00018 6.3E-09 59.6 3.4 25 21-45 25-49 (240)
263 3asz_A Uridine kinase; cytidin 97.2 0.00016 5.5E-09 58.5 2.9 25 19-43 5-29 (211)
264 3gfo_A Cobalt import ATP-bindi 97.2 0.00019 6.4E-09 60.8 3.4 24 21-44 35-58 (275)
265 4g1u_C Hemin import ATP-bindin 97.2 0.00019 6.5E-09 60.5 3.3 25 21-45 38-62 (266)
266 2cbz_A Multidrug resistance-as 97.2 0.00023 7.7E-09 59.0 3.7 25 21-45 32-56 (237)
267 1sgw_A Putative ABC transporte 97.2 0.00019 6.5E-09 58.5 3.1 25 21-45 36-60 (214)
268 1g6h_A High-affinity branched- 97.2 0.0002 6.9E-09 60.1 3.3 25 21-45 34-58 (257)
269 2ff7_A Alpha-hemolysin translo 97.2 0.00021 7.1E-09 59.6 3.3 25 21-45 36-60 (247)
270 4gp7_A Metallophosphoesterase; 97.2 0.0002 6.8E-09 56.1 3.0 22 21-42 10-31 (171)
271 1mv5_A LMRA, multidrug resista 97.2 0.00033 1.1E-08 58.2 4.5 26 20-45 28-53 (243)
272 1htw_A HI0065; nucleotide-bind 97.2 0.00022 7.4E-09 55.2 3.1 25 20-44 33-57 (158)
273 1b0u_A Histidine permease; ABC 97.2 0.00025 8.6E-09 59.6 3.7 24 21-44 33-56 (262)
274 2pze_A Cystic fibrosis transme 97.1 0.00026 9E-09 58.3 3.7 25 21-45 35-59 (229)
275 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00024 8.2E-09 59.4 3.4 23 21-43 30-52 (250)
276 2qi9_C Vitamin B12 import ATP- 97.1 0.00024 8.2E-09 59.3 3.4 25 21-45 27-51 (249)
277 2olj_A Amino acid ABC transpor 97.1 0.00028 9.6E-09 59.4 3.7 24 21-44 51-74 (263)
278 4e22_A Cytidylate kinase; P-lo 97.1 0.00029 1E-08 58.9 3.8 28 18-45 25-55 (252)
279 1ji0_A ABC transporter; ATP bi 97.1 0.00029 9.8E-09 58.5 3.6 25 21-45 33-57 (240)
280 4b4t_J 26S protease regulatory 97.1 0.0023 7.9E-08 56.8 9.6 23 21-43 183-205 (405)
281 2qt1_A Nicotinamide riboside k 97.1 0.00041 1.4E-08 56.0 4.5 31 13-43 14-44 (207)
282 2eyu_A Twitching motility prot 97.1 0.00025 8.4E-09 59.7 3.2 25 19-43 24-48 (261)
283 2ghi_A Transport protein; mult 97.1 0.00031 1.1E-08 59.0 3.7 25 20-44 46-70 (260)
284 2zu0_C Probable ATP-dependent 97.1 0.00034 1.2E-08 59.0 3.8 23 21-43 47-69 (267)
285 1vpl_A ABC transporter, ATP-bi 97.1 0.00038 1.3E-08 58.3 4.1 25 21-45 42-66 (256)
286 3cnl_A YLQF, putative uncharac 97.1 0.00024 8.1E-09 59.8 2.8 44 101-153 18-61 (262)
287 2ihy_A ABC transporter, ATP-bi 97.1 0.00033 1.1E-08 59.5 3.7 25 21-45 48-72 (279)
288 1knq_A Gluconate kinase; ALFA/ 97.1 0.00035 1.2E-08 54.7 3.6 24 19-42 7-30 (175)
289 4b4t_I 26S protease regulatory 97.1 0.0031 1E-07 56.4 10.0 23 21-43 217-239 (437)
290 2ixe_A Antigen peptide transpo 97.1 0.00034 1.2E-08 59.1 3.7 26 20-45 45-70 (271)
291 3tau_A Guanylate kinase, GMP k 97.1 0.00031 1E-08 56.9 3.2 25 20-44 8-32 (208)
292 1ex7_A Guanylate kinase; subst 97.0 0.0001 3.4E-09 58.6 0.3 21 23-43 4-24 (186)
293 2nq2_C Hypothetical ABC transp 97.0 0.00035 1.2E-08 58.4 3.6 25 21-45 32-56 (253)
294 4eun_A Thermoresistant glucoki 97.0 0.00029 9.9E-09 56.6 3.0 26 17-42 26-51 (200)
295 3b85_A Phosphate starvation-in 97.0 0.00019 6.5E-09 58.2 1.9 23 21-43 23-45 (208)
296 2yz2_A Putative ABC transporte 97.0 0.00037 1.3E-08 58.7 3.7 25 21-45 34-58 (266)
297 2v9p_A Replication protein E1; 97.0 0.0003 1E-08 60.3 2.9 24 20-43 126-149 (305)
298 2pjz_A Hypothetical protein ST 97.0 0.00038 1.3E-08 58.6 3.4 24 21-44 31-54 (263)
299 4b4t_K 26S protease regulatory 97.0 0.0033 1.1E-07 56.4 9.6 23 21-43 207-229 (428)
300 2j41_A Guanylate kinase; GMP, 97.0 0.00037 1.3E-08 56.0 3.1 24 21-44 7-30 (207)
301 3nh6_A ATP-binding cassette SU 97.0 0.00031 1E-08 60.4 2.7 26 20-45 80-105 (306)
302 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0058 2E-07 50.8 10.5 23 20-42 39-61 (262)
303 2i3b_A HCR-ntpase, human cance 97.0 0.00031 1.1E-08 56.0 2.4 23 22-44 3-25 (189)
304 3aez_A Pantothenate kinase; tr 96.9 0.00041 1.4E-08 59.9 3.2 27 18-44 88-114 (312)
305 2bbs_A Cystic fibrosis transme 96.9 0.00052 1.8E-08 58.6 3.6 25 21-45 65-89 (290)
306 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00049 1.7E-08 60.4 3.2 25 21-45 31-55 (359)
307 3end_A Light-independent proto 96.9 0.0014 4.9E-08 56.2 6.2 67 69-149 156-224 (307)
308 2bbw_A Adenylate kinase 4, AK4 96.9 0.00062 2.1E-08 56.6 3.7 26 20-45 27-55 (246)
309 3lnc_A Guanylate kinase, GMP k 96.9 0.00032 1.1E-08 57.7 1.9 25 20-44 27-52 (231)
310 1kag_A SKI, shikimate kinase I 96.9 0.00044 1.5E-08 54.0 2.5 23 21-43 5-27 (173)
311 2bdt_A BH3686; alpha-beta prot 96.9 0.00047 1.6E-08 54.7 2.7 22 21-42 3-24 (189)
312 3jvv_A Twitching mobility prot 96.9 0.00051 1.7E-08 60.4 3.1 24 20-43 123-146 (356)
313 1z47_A CYSA, putative ABC-tran 96.8 0.00058 2E-08 59.9 3.4 25 21-45 42-66 (355)
314 1t9h_A YLOQ, probable GTPase E 96.8 0.002 6.7E-08 55.3 6.6 49 102-153 84-132 (307)
315 3tui_C Methionine import ATP-b 96.8 0.00072 2.5E-08 59.4 3.8 25 21-45 55-79 (366)
316 2qor_A Guanylate kinase; phosp 96.8 0.00063 2.2E-08 54.8 3.2 23 21-43 13-35 (204)
317 4b4t_M 26S protease regulatory 96.8 0.0021 7.2E-08 57.8 6.9 23 21-43 216-238 (434)
318 2f1r_A Molybdopterin-guanine d 96.8 0.00026 9E-09 55.5 0.8 24 21-44 3-26 (171)
319 2gza_A Type IV secretion syste 96.8 0.00058 2E-08 60.3 3.1 25 20-44 175-199 (361)
320 2jeo_A Uridine-cytidine kinase 96.8 0.00065 2.2E-08 56.4 3.2 25 19-43 24-48 (245)
321 3uie_A Adenylyl-sulfate kinase 96.8 0.00067 2.3E-08 54.5 3.1 25 19-43 24-48 (200)
322 2yyz_A Sugar ABC transporter, 96.8 0.0008 2.7E-08 59.1 3.8 25 21-45 30-54 (359)
323 3cwq_A Para family chromosome 96.8 0.0012 4E-08 53.5 4.5 66 69-152 67-134 (209)
324 3rlf_A Maltose/maltodextrin im 96.8 0.00082 2.8E-08 59.4 3.8 25 21-45 30-54 (381)
325 2it1_A 362AA long hypothetical 96.8 0.00082 2.8E-08 59.1 3.8 25 21-45 30-54 (362)
326 1g29_1 MALK, maltose transport 96.8 0.0007 2.4E-08 59.8 3.4 25 21-45 30-54 (372)
327 4b4t_H 26S protease regulatory 96.8 0.006 2.1E-07 55.0 9.3 24 20-43 243-266 (467)
328 3tqc_A Pantothenate kinase; bi 96.8 0.0008 2.7E-08 58.2 3.5 27 17-43 89-115 (321)
329 1np6_A Molybdopterin-guanine d 96.8 0.00066 2.2E-08 53.3 2.7 23 21-43 7-29 (174)
330 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0005 1.7E-08 59.9 2.2 24 21-44 172-195 (330)
331 1v43_A Sugar-binding transport 96.7 0.00094 3.2E-08 59.0 3.8 25 21-45 38-62 (372)
332 1y63_A LMAJ004144AAA protein; 96.7 0.0011 3.7E-08 52.4 3.8 25 19-43 9-33 (184)
333 1sq5_A Pantothenate kinase; P- 96.7 0.00085 2.9E-08 57.8 3.4 26 18-43 78-103 (308)
334 2ewv_A Twitching motility prot 96.7 0.00073 2.5E-08 59.8 3.0 25 19-43 135-159 (372)
335 3h4m_A Proteasome-activating n 96.7 0.0069 2.3E-07 51.2 8.9 24 20-43 51-74 (285)
336 3lw7_A Adenylate kinase relate 96.7 0.00096 3.3E-08 51.8 3.2 20 21-40 2-21 (179)
337 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4.1E-08 52.9 3.9 26 17-42 17-42 (201)
338 4a74_A DNA repair and recombin 96.7 0.00071 2.4E-08 55.3 2.5 23 21-43 26-48 (231)
339 3gd7_A Fusion complex of cysti 96.7 0.00088 3E-08 59.5 3.2 25 20-44 47-71 (390)
340 1cke_A CK, MSSA, protein (cyti 96.7 0.00082 2.8E-08 54.9 2.9 23 21-43 6-28 (227)
341 3d31_A Sulfate/molybdate ABC t 96.7 0.00079 2.7E-08 58.9 2.8 25 21-45 27-51 (348)
342 2vp4_A Deoxynucleoside kinase; 96.7 0.00086 3E-08 55.1 3.0 26 18-43 18-43 (230)
343 2oap_1 GSPE-2, type II secreti 96.7 0.00077 2.6E-08 62.2 2.9 24 21-44 261-284 (511)
344 1jjv_A Dephospho-COA kinase; P 96.7 0.0011 3.8E-08 53.3 3.5 22 21-42 3-24 (206)
345 1rz3_A Hypothetical protein rb 96.6 0.0011 3.7E-08 53.3 3.3 24 19-42 21-44 (201)
346 1p9r_A General secretion pathw 96.6 0.0009 3.1E-08 60.1 3.1 25 19-43 166-190 (418)
347 1ukz_A Uridylate kinase; trans 96.6 0.0017 5.8E-08 52.0 4.4 28 15-42 10-37 (203)
348 3ec2_A DNA replication protein 96.6 0.00074 2.5E-08 53.1 2.2 25 20-44 38-62 (180)
349 1lw7_A Transcriptional regulat 96.6 0.00074 2.5E-08 59.7 2.4 25 20-44 170-194 (365)
350 1odf_A YGR205W, hypothetical 3 96.6 0.0013 4.3E-08 56.2 3.7 27 17-43 28-54 (290)
351 2if2_A Dephospho-COA kinase; a 96.6 0.00092 3.1E-08 53.7 2.6 22 21-42 2-23 (204)
352 3ozx_A RNAse L inhibitor; ATP 96.6 0.0017 5.8E-08 60.3 4.7 25 21-45 26-50 (538)
353 1ly1_A Polynucleotide kinase; 96.6 0.0014 4.7E-08 51.3 3.5 22 21-42 3-24 (181)
354 2ehv_A Hypothetical protein PH 96.6 0.0012 4.1E-08 54.6 3.3 22 20-41 30-51 (251)
355 1oxx_K GLCV, glucose, ABC tran 96.6 0.00075 2.6E-08 59.2 2.1 25 21-45 32-56 (353)
356 2plr_A DTMP kinase, probable t 96.6 0.0015 5.1E-08 52.6 3.8 22 21-42 5-26 (213)
357 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.4E-08 51.0 3.1 22 21-42 2-23 (173)
358 1qvr_A CLPB protein; coiled co 96.5 0.7 2.4E-05 45.4 24.0 24 20-43 191-214 (854)
359 3vaa_A Shikimate kinase, SK; s 96.5 0.0016 5.4E-08 52.2 3.6 23 20-42 25-47 (199)
360 2kjq_A DNAA-related protein; s 96.5 0.00088 3E-08 51.1 1.8 26 19-44 35-60 (149)
361 2wwf_A Thymidilate kinase, put 96.4 0.0022 7.5E-08 51.6 3.9 24 19-42 9-32 (212)
362 1xjc_A MOBB protein homolog; s 96.4 0.002 7E-08 50.1 3.4 24 20-43 4-27 (169)
363 3kta_A Chromosome segregation 96.4 0.0013 4.5E-08 51.7 2.4 21 22-42 28-48 (182)
364 3t61_A Gluconokinase; PSI-biol 96.4 0.0016 5.6E-08 52.2 3.0 23 20-42 18-40 (202)
365 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0021 7.2E-08 59.8 4.0 28 18-45 45-72 (538)
366 3cm0_A Adenylate kinase; ATP-b 96.4 0.0021 7.2E-08 50.6 3.5 21 21-41 5-25 (186)
367 1kht_A Adenylate kinase; phosp 96.4 0.002 7E-08 50.8 3.4 22 21-42 4-25 (192)
368 2rhm_A Putative kinase; P-loop 96.4 0.0022 7.4E-08 50.8 3.5 22 21-42 6-27 (193)
369 1d2n_A N-ethylmaleimide-sensit 96.4 0.026 9E-07 47.3 10.5 26 18-43 62-87 (272)
370 2x8a_A Nuclear valosin-contain 96.4 0.0014 4.9E-08 55.4 2.4 21 23-43 47-67 (274)
371 2yvu_A Probable adenylyl-sulfa 96.3 0.0031 1E-07 49.8 4.2 25 19-43 12-36 (186)
372 1qhx_A CPT, protein (chloramph 96.3 0.0022 7.6E-08 50.1 3.3 22 21-42 4-25 (178)
373 2jaq_A Deoxyguanosine kinase; 96.3 0.0022 7.5E-08 51.2 3.3 21 22-42 2-22 (205)
374 1nij_A Hypothetical protein YJ 96.3 0.0013 4.4E-08 56.9 2.1 25 20-44 4-28 (318)
375 1nks_A Adenylate kinase; therm 96.3 0.0021 7.3E-08 50.8 3.2 22 21-42 2-23 (194)
376 1uf9_A TT1252 protein; P-loop, 96.3 0.0025 8.7E-08 50.8 3.7 25 19-43 7-31 (203)
377 1gvn_B Zeta; postsegregational 96.3 0.0024 8.1E-08 54.4 3.6 25 18-42 31-55 (287)
378 1aky_A Adenylate kinase; ATP:A 96.3 0.0025 8.6E-08 51.8 3.6 23 20-42 4-26 (220)
379 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0016 5.3E-08 59.3 2.5 25 20-44 138-162 (460)
380 1nn5_A Similar to deoxythymidy 96.3 0.0024 8.3E-08 51.5 3.5 23 20-42 9-31 (215)
381 3j16_B RLI1P; ribosome recycli 96.3 0.0026 8.8E-08 59.9 4.0 27 19-45 102-128 (608)
382 3trf_A Shikimate kinase, SK; a 96.3 0.0025 8.7E-08 50.1 3.4 21 21-41 6-26 (185)
383 3b9p_A CG5977-PA, isoform A; A 96.3 0.018 6.2E-07 48.9 8.9 24 20-43 54-77 (297)
384 3euj_A Chromosome partition pr 96.2 0.0019 6.4E-08 58.9 2.7 24 21-44 30-53 (483)
385 3bk7_A ABC transporter ATP-bin 96.2 0.0028 9.7E-08 59.7 3.9 28 18-45 115-142 (607)
386 3iij_A Coilin-interacting nucl 96.2 0.0031 1.1E-07 49.4 3.6 22 20-41 11-32 (180)
387 3b60_A Lipid A export ATP-bind 96.2 0.003 1E-07 59.4 4.0 26 20-45 369-394 (582)
388 1ixz_A ATP-dependent metallopr 96.2 0.002 6.8E-08 53.6 2.5 21 23-43 52-72 (254)
389 3kjh_A CO dehydrogenase/acetyl 96.2 0.014 4.8E-07 48.1 7.7 64 68-149 130-194 (254)
390 1tev_A UMP-CMP kinase; ploop, 96.2 0.0031 1.1E-07 49.9 3.5 21 21-41 4-24 (196)
391 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.014 4.8E-07 51.4 8.1 20 22-41 25-44 (365)
392 3b5x_A Lipid A export ATP-bind 96.2 0.0032 1.1E-07 59.2 4.1 26 20-45 369-394 (582)
393 2v54_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 50.2 3.6 23 21-43 5-27 (204)
394 3fb4_A Adenylate kinase; psych 96.2 0.0028 9.7E-08 51.2 3.2 20 22-41 2-21 (216)
395 3ozx_A RNAse L inhibitor; ATP 96.1 0.0034 1.2E-07 58.3 4.0 25 21-45 295-319 (538)
396 2c95_A Adenylate kinase 1; tra 96.1 0.0034 1.2E-07 49.8 3.5 22 20-41 9-30 (196)
397 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.055 1.9E-06 46.7 11.4 24 20-43 45-68 (322)
398 2pez_A Bifunctional 3'-phospho 96.1 0.0037 1.2E-07 49.0 3.6 23 20-42 5-27 (179)
399 2obl_A ESCN; ATPase, hydrolase 96.1 0.0024 8.1E-08 55.9 2.6 26 19-44 70-95 (347)
400 1qf9_A UMP/CMP kinase, protein 96.1 0.0045 1.5E-07 48.9 4.0 21 21-41 7-27 (194)
401 1zak_A Adenylate kinase; ATP:A 96.1 0.0032 1.1E-07 51.2 3.2 23 20-42 5-27 (222)
402 3dl0_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 50.9 3.2 21 22-42 2-22 (216)
403 1ak2_A Adenylate kinase isoenz 96.1 0.0039 1.3E-07 51.2 3.7 25 18-42 14-38 (233)
404 1yqt_A RNAse L inhibitor; ATP- 96.1 0.004 1.4E-07 57.9 4.1 25 21-45 313-337 (538)
405 1njg_A DNA polymerase III subu 96.1 0.0052 1.8E-07 50.0 4.5 23 21-43 46-68 (250)
406 2rcn_A Probable GTPase ENGC; Y 96.1 0.03 1E-06 49.0 9.4 46 102-153 128-175 (358)
407 3qf4_B Uncharacterized ABC tra 96.0 0.0031 1.1E-07 59.5 3.2 27 19-45 380-406 (598)
408 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0026 8.9E-08 51.8 2.5 22 21-42 24-45 (235)
409 2yl4_A ATP-binding cassette SU 96.0 0.003 1E-07 59.6 3.1 26 20-45 370-395 (595)
410 3tlx_A Adenylate kinase 2; str 96.0 0.0044 1.5E-07 51.3 3.8 24 19-42 28-51 (243)
411 1zd8_A GTP:AMP phosphotransfer 96.0 0.0037 1.3E-07 51.1 3.3 21 21-41 8-28 (227)
412 1vht_A Dephospho-COA kinase; s 96.0 0.0044 1.5E-07 50.2 3.7 22 21-42 5-26 (218)
413 3bk7_A ABC transporter ATP-bin 96.0 0.0043 1.5E-07 58.5 4.1 25 21-45 383-407 (607)
414 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0048 1.6E-07 47.0 3.7 21 21-41 24-44 (149)
415 1via_A Shikimate kinase; struc 96.0 0.0036 1.2E-07 48.8 2.9 21 22-42 6-26 (175)
416 4a82_A Cystic fibrosis transme 96.0 0.0026 9.1E-08 59.7 2.5 27 19-45 366-392 (578)
417 1cr0_A DNA primase/helicase; R 96.0 0.0028 9.4E-08 54.1 2.3 23 21-43 36-58 (296)
418 1iy2_A ATP-dependent metallopr 96.0 0.003 1E-07 53.4 2.5 21 23-43 76-96 (278)
419 1uj2_A Uridine-cytidine kinase 96.0 0.0045 1.5E-07 51.5 3.5 26 17-42 19-44 (252)
420 1gtv_A TMK, thymidylate kinase 95.9 0.0018 6.3E-08 52.2 1.1 22 22-43 2-23 (214)
421 2pt5_A Shikimate kinase, SK; a 95.9 0.0043 1.5E-07 47.9 3.2 21 22-42 2-22 (168)
422 2bwj_A Adenylate kinase 5; pho 95.9 0.0044 1.5E-07 49.2 3.3 22 21-42 13-34 (199)
423 2f6r_A COA synthase, bifunctio 95.9 0.009 3.1E-07 50.6 5.3 23 19-41 74-96 (281)
424 1in4_A RUVB, holliday junction 95.9 0.0029 1E-07 55.1 2.3 24 21-44 52-75 (334)
425 2p5t_B PEZT; postsegregational 95.9 0.0034 1.2E-07 52.3 2.6 26 17-42 29-54 (253)
426 2dpy_A FLII, flagellum-specifi 95.9 0.0032 1.1E-07 56.9 2.6 26 19-44 156-181 (438)
427 3qf4_A ABC transporter, ATP-bi 95.9 0.0036 1.2E-07 58.9 2.9 26 20-45 369-394 (587)
428 1svm_A Large T antigen; AAA+ f 95.9 0.0042 1.4E-07 54.9 3.0 23 20-42 169-191 (377)
429 3zvl_A Bifunctional polynucleo 95.9 0.042 1.4E-06 49.3 9.7 24 19-42 257-280 (416)
430 2z0h_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 48.9 3.2 21 22-42 2-22 (197)
431 1e4v_A Adenylate kinase; trans 95.8 0.0047 1.6E-07 49.9 3.1 21 22-42 2-22 (214)
432 2pbr_A DTMP kinase, thymidylat 95.8 0.0049 1.7E-07 48.7 3.2 21 22-42 2-22 (195)
433 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0054 1.8E-07 51.3 3.6 22 21-42 5-26 (260)
434 2ze6_A Isopentenyl transferase 95.8 0.0052 1.8E-07 51.2 3.4 21 22-42 3-23 (253)
435 2chg_A Replication factor C sm 95.8 0.057 2E-06 43.0 9.7 22 22-43 40-61 (226)
436 3r20_A Cytidylate kinase; stru 95.8 0.0053 1.8E-07 50.4 3.3 22 20-41 9-30 (233)
437 3j16_B RLI1P; ribosome recycli 95.8 0.0058 2E-07 57.5 4.0 24 22-45 380-403 (608)
438 1qhl_A Protein (cell division 95.8 0.00065 2.2E-08 55.7 -2.2 23 22-44 29-51 (227)
439 2iyv_A Shikimate kinase, SK; t 95.8 0.0046 1.6E-07 48.6 2.8 21 21-41 3-23 (184)
440 1e6c_A Shikimate kinase; phosp 95.8 0.0048 1.6E-07 47.8 2.9 21 21-41 3-23 (173)
441 3nwj_A ATSK2; P loop, shikimat 95.8 0.0041 1.4E-07 51.8 2.6 23 20-42 48-70 (250)
442 1jbk_A CLPB protein; beta barr 95.8 0.0064 2.2E-07 47.5 3.6 24 20-43 43-66 (195)
443 2vli_A Antibiotic resistance p 95.8 0.0041 1.4E-07 48.7 2.3 21 21-41 6-26 (183)
444 3vfd_A Spastin; ATPase, microt 95.7 0.036 1.2E-06 49.2 8.7 24 20-43 148-171 (389)
445 2xb4_A Adenylate kinase; ATP-b 95.7 0.006 2.1E-07 49.7 3.3 20 22-41 2-21 (223)
446 3umf_A Adenylate kinase; rossm 95.7 0.0089 3E-07 48.6 4.2 25 19-43 28-52 (217)
447 1m7g_A Adenylylsulfate kinase; 95.7 0.0071 2.4E-07 48.8 3.6 24 20-43 25-48 (211)
448 2cvh_A DNA repair and recombin 95.7 0.0058 2E-07 49.3 3.0 22 21-42 21-42 (220)
449 1n0w_A DNA repair protein RAD5 95.6 0.0049 1.7E-07 50.6 2.5 23 21-43 25-47 (243)
450 4eaq_A DTMP kinase, thymidylat 95.6 0.0084 2.9E-07 49.1 3.8 25 19-43 25-49 (229)
451 1zuh_A Shikimate kinase; alpha 95.6 0.0071 2.4E-07 46.7 3.2 22 20-41 7-28 (168)
452 1lv7_A FTSH; alpha/beta domain 95.6 0.0064 2.2E-07 50.6 3.1 23 21-43 46-68 (257)
453 3eie_A Vacuolar protein sortin 95.6 0.024 8.1E-07 48.9 6.8 24 20-43 51-74 (322)
454 2qp9_X Vacuolar protein sortin 95.6 0.012 4.1E-07 51.6 5.0 23 21-43 85-107 (355)
455 2iw3_A Elongation factor 3A; a 95.6 0.0044 1.5E-07 61.2 2.3 25 21-45 700-724 (986)
456 3sr0_A Adenylate kinase; phosp 95.6 0.0072 2.5E-07 48.7 3.2 22 22-43 2-23 (206)
457 2grj_A Dephospho-COA kinase; T 95.6 0.0084 2.9E-07 47.7 3.5 24 18-41 10-33 (192)
458 3be4_A Adenylate kinase; malar 95.5 0.0074 2.5E-07 48.9 3.2 21 21-41 6-26 (217)
459 4f4c_A Multidrug resistance pr 95.5 0.0044 1.5E-07 63.8 2.2 25 20-44 1105-1129(1321)
460 1q3t_A Cytidylate kinase; nucl 95.5 0.0093 3.2E-07 49.0 3.7 25 18-42 14-38 (236)
461 3cf2_A TER ATPase, transitiona 95.4 0.05 1.7E-06 52.8 8.9 25 20-44 238-262 (806)
462 2ce7_A Cell division protein F 95.4 0.041 1.4E-06 50.2 7.9 22 22-43 51-72 (476)
463 3u61_B DNA polymerase accessor 95.4 0.24 8.2E-06 42.4 12.5 21 22-42 50-70 (324)
464 2w58_A DNAI, primosome compone 95.3 0.01 3.5E-07 47.3 3.4 23 21-43 55-77 (202)
465 4f4c_A Multidrug resistance pr 95.3 0.0096 3.3E-07 61.3 3.9 26 20-45 444-469 (1321)
466 1jr3_A DNA polymerase III subu 95.3 0.025 8.7E-07 49.5 6.2 21 22-42 40-60 (373)
467 2p65_A Hypothetical protein PF 95.3 0.0082 2.8E-07 46.8 2.7 24 20-43 43-66 (187)
468 3bos_A Putative DNA replicatio 95.3 0.011 3.6E-07 48.3 3.4 25 19-43 51-75 (242)
469 1tue_A Replication protein E1; 95.3 0.0087 3E-07 48.0 2.7 22 21-42 59-80 (212)
470 3qks_A DNA double-strand break 95.3 0.012 4.2E-07 47.1 3.7 21 21-41 24-44 (203)
471 4fcw_A Chaperone protein CLPB; 95.3 0.015 5E-07 49.7 4.4 26 18-43 45-70 (311)
472 4aby_A DNA repair protein RECN 95.3 0.003 1E-07 56.6 -0.1 20 22-41 62-81 (415)
473 1nlf_A Regulatory protein REPA 95.2 0.0078 2.7E-07 50.8 2.3 23 20-42 30-52 (279)
474 1ltq_A Polynucleotide kinase; 95.2 0.012 4.1E-07 50.1 3.5 22 21-42 3-24 (301)
475 3foz_A TRNA delta(2)-isopenten 95.2 0.015 5.1E-07 49.7 4.0 23 20-42 10-32 (316)
476 2iw3_A Elongation factor 3A; a 95.2 0.0083 2.8E-07 59.3 2.7 24 21-44 462-485 (986)
477 3n70_A Transport activator; si 95.2 0.013 4.5E-07 44.1 3.3 24 20-43 24-47 (145)
478 3syl_A Protein CBBX; photosynt 95.1 0.015 5.2E-07 49.6 3.9 26 18-43 65-90 (309)
479 3cr8_A Sulfate adenylyltranfer 95.1 0.0067 2.3E-07 56.4 1.7 26 19-44 368-393 (552)
480 1a7j_A Phosphoribulokinase; tr 95.1 0.0072 2.5E-07 51.5 1.7 23 20-42 5-27 (290)
481 3a8t_A Adenylate isopentenyltr 95.1 0.017 5.8E-07 50.0 4.0 24 21-44 41-64 (339)
482 3g5u_A MCG1178, multidrug resi 95.1 0.012 4E-07 60.5 3.5 26 20-45 416-441 (1284)
483 3exa_A TRNA delta(2)-isopenten 95.1 0.015 5.2E-07 49.8 3.7 23 21-43 4-26 (322)
484 2qmh_A HPR kinase/phosphorylas 95.0 0.016 5.4E-07 46.2 3.4 24 20-43 34-57 (205)
485 3ld9_A DTMP kinase, thymidylat 95.0 0.018 6.2E-07 46.9 3.8 30 13-42 14-43 (223)
486 3ake_A Cytidylate kinase; CMP 95.0 0.014 4.9E-07 46.5 3.2 21 22-42 4-24 (208)
487 3cf0_A Transitional endoplasmi 95.0 0.013 4.4E-07 50.1 3.0 24 20-43 49-72 (301)
488 3d3q_A TRNA delta(2)-isopenten 94.9 0.015 5.2E-07 50.4 3.4 22 21-42 8-29 (340)
489 3ux8_A Excinuclease ABC, A sub 94.9 0.0083 2.8E-07 57.4 1.7 21 21-41 349-369 (670)
490 3crm_A TRNA delta(2)-isopenten 94.9 0.017 5.9E-07 49.7 3.5 23 21-43 6-28 (323)
491 4ag6_A VIRB4 ATPase, type IV s 94.8 0.015 5.2E-07 51.7 3.2 25 19-43 34-58 (392)
492 1sxj_E Activator 1 40 kDa subu 94.8 0.012 4.1E-07 51.4 2.5 22 22-43 38-59 (354)
493 3t15_A Ribulose bisphosphate c 94.8 0.018 6.2E-07 49.0 3.5 24 20-43 36-59 (293)
494 1pzn_A RAD51, DNA repair and r 94.8 0.011 3.9E-07 51.6 2.3 25 20-44 131-155 (349)
495 3qkt_A DNA double-strand break 94.8 0.019 6.5E-07 50.0 3.7 21 21-41 24-44 (339)
496 3v9p_A DTMP kinase, thymidylat 94.7 0.015 5.1E-07 47.6 2.6 24 19-42 24-47 (227)
497 1w1w_A Structural maintenance 94.7 0.016 5.4E-07 52.3 3.0 22 21-42 27-48 (430)
498 2ius_A DNA translocase FTSK; n 94.7 0.015 5.2E-07 53.3 2.9 24 19-42 166-189 (512)
499 1e69_A Chromosome segregation 94.7 0.012 4.1E-07 50.8 2.1 20 22-41 26-45 (322)
500 1l8q_A Chromosomal replication 94.7 0.016 5.4E-07 50.0 2.8 24 20-43 37-60 (324)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=100.00 E-value=8.8e-32 Score=228.00 Aligned_cols=207 Identities=31% Similarity=0.560 Sum_probs=163.1
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh-HHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP-EFVSK 92 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~-~~~~~ 92 (311)
+......++|+|+|.+|+|||||+|+|+|...+.....+.++|..+....+.+ .+..+.||||||+.++.... +....
T Consensus 15 ~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 15 YFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp -----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred cccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHH
Confidence 34456789999999999999999999999987665555556888888888888 89999999999998764433 34455
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCc-cCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKI-SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~-~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
.+..++..+.+++|++|+|+|++ +++..+..+++.+.+.+|.+. ..|+++++||+|+.. ..+.+++.......+.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~ 169 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALR 169 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHH
Confidence 66667666779999999999998 788889999999999988754 358999999999753 4567777654456789
Q ss_pred HHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 172 EILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 172 ~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
.++..|+.++++|++... ++..+.|+.+|++.|.+++.++++.+|+++++..++
T Consensus 170 ~l~~~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 223 (247)
T 3lxw_A 170 ELVAECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQ 223 (247)
T ss_dssp HHHHHTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999999999998864 566789999999999999999999999999988886
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.98 E-value=3.7e-31 Score=223.35 Aligned_cols=206 Identities=36% Similarity=0.657 Sum_probs=149.4
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|.+|+|||||+|+|+|...+.......++|..+....+.+ .+..+.||||||+.++.....++.+.+
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHH
Confidence 4556779999999999999999999999887555444447788888888888 889999999999999877777788889
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..++..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|.+.. ..+.+++.. ....+..++
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~ 178 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLM 178 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHH
Confidence 998888899999999999998 7777888888888888876666799999999999877 677777664 345688999
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
..|+.++++|++... ++....++.+|+..|..++.++++.+|..+++.+++
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e 229 (239)
T 3lxx_A 179 DIFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229 (239)
T ss_dssp HHHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred HHcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 999999999988763 456778999999999999999899999999888776
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.97 E-value=1.9e-29 Score=215.60 Aligned_cols=206 Identities=31% Similarity=0.554 Sum_probs=163.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|++|+|||||+|+|+|...+.....+.++|..+....+.+ .+..+.||||||+.++......+.+.+
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 4556679999999999999999999999886655444444777777777777 889999999999998776666666677
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe-ccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT-GGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n-k~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..+++++|++|||+|++ +++..+..++..+.+.++.....|+++|+| |+|+.. ..+..++.......+..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence 777777889999999999998 688888888899999888765567888877 999873 346666554344456778
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 226 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 226 (311)
+..++.++..|.+ ..+||.++.|++++++.|.+++..+.+..|+.+++.+..
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 8888888766766 778999999999999999999988776889888776665
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=1.5e-23 Score=174.65 Aligned_cols=178 Identities=15% Similarity=0.191 Sum_probs=123.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++..........+++|.......+....+..+.||||||+.++..... +....
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3456799999999999999999999998732233344567777776666532678999999999887643322 11122
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+..........+|++|||+|++++++..+..++..+.. ...|+++|+||+|+... ..+...... +...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 172 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR--QESINALRA-----TQKS 172 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence 22222233456899999999998888877777777765 23599999999998865 444333332 2333
Q ss_pred HHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+.. .+.+++. +||.++.|+.+|+++|.+.++.
T Consensus 173 l~~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 173 LDAYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHhhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCc
Confidence 332 2334444 6888899999999999988754
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.90 E-value=3e-23 Score=181.06 Aligned_cols=182 Identities=15% Similarity=0.286 Sum_probs=130.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-CceEEEEeCCCCCCCCCChHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-GQVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
++++.+...|+++|.+|||||||+|+|+|..... ....+++|.......+.. . +..+.||||||+.++. ....+.+
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~ 80 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-ISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGH 80 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccc-cCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHH
Confidence 3455567999999999999999999999987532 233456666666565665 6 8899999999998754 2244556
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHH-HHHHHHHhCCCccCeEEEEEeccCCC-CCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAA-IHILESLFGKKISDYMIVVFTGGDEL-EDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~nk~D~~-~~~~~~~~~~~~~~~~~~~ 170 (311)
.+...+..++..+|+++||+|++++.+..+... +..+.. ...|+++|+||+|+. .. ..+.....
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~--~~~~~~~~------- 146 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPA--KNVLPLID------- 146 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSG--GGGHHHHH-------
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCH--HHHHHHHH-------
Confidence 666667777888999999999997788777665 555554 235999999999987 33 33333322
Q ss_pred HHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 171 KEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 171 ~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
.+...++ ..+++ +||.++.|+++|++.|...+++ +...|+.+
T Consensus 147 -~l~~~~~~~~~i~~------vSA~~g~gv~~L~~~l~~~l~~-~~~~~~~~ 190 (308)
T 3iev_A 147 -EIHKKHPELTEIVP------ISALKGANLDELVKTILKYLPE-GEPLFPED 190 (308)
T ss_dssp -HHHHHCTTCCCEEE------CBTTTTBSHHHHHHHHHHHSCB-CCCSSCTT
T ss_pred -HHHHhccCCCeEEE------EeCCCCCCHHHHHHHHHHhCcc-CCCCCCcc
Confidence 2333333 34554 7889999999999999998865 45556554
No 6
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=3.6e-22 Score=162.54 Aligned_cols=171 Identities=18% Similarity=0.292 Sum_probs=110.4
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
|....++|+|+|.+|+|||||+|+|++..........++.|.....+.+ +..+.+|||||+.+...... ....+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~-~~~~~~ 93 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKS-EREAWG 93 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHH-HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHH-HHHHHH
Confidence 4456799999999999999999999998643333334455665554432 34799999999987654432 122233
Q ss_pred HHHHh---ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGM---AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~---~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+.. ....+|++++|+|++++.+..+..++.++.. ...|+++|+||+|+... ..+...... +..
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 161 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK--GKWDKHAKV-----VRQ 161 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh--HHHHHHHHH-----HHH
Confidence 33332 2345699999999987888777777777665 22599999999998865 444433222 333
Q ss_pred HHHh-cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 173 ILQL-CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~~~-~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.. .+..++. +|+.++.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 162 TLNIDPEDELIL------FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHTCCTTSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHcccCCCceEE------EEccCCCCHHHHHHHHHHHh
Confidence 2221 2344554 78888899999999998765
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2.9e-22 Score=173.93 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
..+|+++|+||+|||||+|+|+|...... ...+++|.......+.. .+..+.||||||+.++. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~iv-s~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeee-cCCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 47899999999999999999999876322 22234555444444444 78899999999998753 244555666677
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc-HHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|+++||+|++++++..+..++..+....+ ..|+++|+||+|+... .. +.+.+.. + ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 78899999999999997888877777777765431 2599999999998765 33 3332222 1 12
Q ss_pred -CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 179 -NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 179 -~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
..+++ +||.++.|+++|++.|...+++ +...|+.+
T Consensus 146 ~~~~~~------iSA~~g~gv~~l~~~l~~~l~~-~~~~y~~~ 181 (301)
T 1wf3_A 146 EAEPRM------LSALDERQVAELKADLLALMPE-GPFFYPED 181 (301)
T ss_dssp TSEEEE------CCTTCHHHHHHHHHHHHTTCCB-CCCSSCTT
T ss_pred cCcEEE------EeCCCCCCHHHHHHHHHHhccc-CCCCCCcc
Confidence 23333 7889999999999999887754 44455544
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.8e-21 Score=158.25 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=119.0
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~ 92 (311)
.|....++|+|+|.+|+|||||+|+|++... .......+.|....... .+..+.+|||||+........ ....
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHH
Confidence 3445678999999999999999999999873 22233345555544333 355789999999876543322 1122
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..........+|++++|+|++.+.+..+..++.++... ..|+++|+||+|+... ......... +..
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 160 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM--SERAKKLEE-----HRK 160 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh--HHHHHHHHH-----HHH
Confidence 2333333334667999999999877777777777777653 2599999999998865 444444433 455
Q ss_pred HHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+...+ .+++. +||.++.|+++++++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 161 VFSKYGEYTIIP------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHSSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHhhcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence 555433 35555 7888899999999999987743
No 9
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=1.6e-21 Score=163.03 Aligned_cols=181 Identities=16% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|......++|+|+|.+|+|||||+|+|++.... ....++.|.......+.+ .+..+.||||||+.+..........
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~- 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE- 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-
Confidence 343467799999999999999999999998753 223345666666666666 7789999999998753221111110
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
. ..+...+..+|++|||+|++++.+......+.++..+.......|+++|+||+|+... ..+...... .+..+
T Consensus 99 ~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~ 171 (228)
T 2qu8_A 99 M-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQI 171 (228)
T ss_dssp H-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHH----HHHHH
T ss_pred H-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHH----HHHHH
Confidence 1 1112235678999999999855442222223333333322123699999999998755 222211110 13444
Q ss_pred HHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+ ..++. +||.++.|+++++++|.+.+..
T Consensus 172 ~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 172 LDNVKNPIKFSS------FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHCCSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEE------EecccCCCHHHHHHHHHHHHHH
Confidence 45444 34444 7888899999999999877643
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.87 E-value=2.9e-21 Score=165.60 Aligned_cols=198 Identities=20% Similarity=0.298 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++....... ...++|.......+.. .+..+.||||||+.++..........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35699999999999999999999998753322 2345566666666666 788999999999987654334444444433
Q ss_pred HHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+++|++|||+|++ .+++..+..++..+...++.+...|+++|+||+|+....+..+++++.. ....+...+..
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~ 191 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 191 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence 2 346799999999886 3677777889999998888766579999999999876533466666553 22233433331
Q ss_pred c----------CCcEEEecCCchhh---------hhhHHHHHHHHHHHHHHHHHcCCCCCcHH
Q 021534 177 C----------DNRCVLFDNKTKDA---------AKRTEQVGKLLSLVNSVIVQNGGQPYTDE 220 (311)
Q Consensus 177 ~----------~~~~~~f~~~~~~s---------a~~~~~i~~l~~~i~~~~~~~~~~~~~~~ 220 (311)
. ..++.+..+..... .........|+..|.+++...+...+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~ 254 (270)
T 1h65_A 192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDK 254 (270)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCH
T ss_pred hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCH
Confidence 0 12444444331110 01111356999999999877666665544
No 11
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=2.1e-21 Score=165.66 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=115.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|+|...... ....++|.......+.+ .+..+.||||||+.++....+...+.+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 3569999999999999999999999875222 22355666677777777 888999999999988765555555555555
Q ss_pred HHhccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+ ..+++|++|||++++ .+++..+..++..+...++.....|+++|+||+|+.......+++++.. ....+..++..
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~ 188 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA 188 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence 4 245789999999886 4577777889999999998877779999999999865544667777654 22335555544
Q ss_pred c
Q 021534 177 C 177 (311)
Q Consensus 177 ~ 177 (311)
+
T Consensus 189 ~ 189 (262)
T 3def_A 189 G 189 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.1e-21 Score=168.50 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=103.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCC----CCCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCCCh---H
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAG----SSGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSADP---E 88 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~----~~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~~~---~ 88 (311)
..++|+|+|.+|+|||||+|+|++...+..... ....|.........+. ++. .++||||||++++.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 458999999999999999999999887654321 0123333333333321 333 89999999998764332 2
Q ss_pred HHHHHH----HHHHHh---------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCC
Q 021534 89 FVSKEI----VKCIGM---------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN 154 (311)
Q Consensus 89 ~~~~~~----~~~~~~---------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 154 (311)
.+...+ ..++.. ...++|+++|+++.+ +++...+..+++.+.. ..|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH-
Confidence 222111 222221 123478999999765 5788888887777654 3599999999998866
Q ss_pred hhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 155 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..+... +...+..++.+++. .|+.++.++.++++.|.+.++
T Consensus 160 -~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCC
Confidence 555555444 56666666777665 466778999999999988664
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=2.1e-21 Score=157.35 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=110.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~ 90 (311)
......+..++|+|+|.+|+|||||+|+|++......... ..+.......+... ....+.||||||......
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----- 86 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVS--TVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT----- 86 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--ceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----
Confidence 3334445578999999999999999999998764222222 22222333333331 234889999999765322
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. ..
T Consensus 87 ------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~-------~~ 149 (189)
T 2gf9_A 87 ------ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE--RVVPA-------ED 149 (189)
T ss_dssp ------SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG--CCSCH-------HH
T ss_pred ------hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--cCCCH-------HH
Confidence 23455788999999999985433222 3455556554322 3599999999998654 11110 11
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+..++. +|+.++.|+++++++|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 150 GRRLADDLGFEFFE------ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 34445555666665 7888899999999999877643
No 14
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=1.8e-21 Score=167.03 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=121.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP--EFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~--~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|+|+|... ....++++|.......+.+ .+..+.||||||+++..... ....+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 48999999999999999999999875 3344678888888888887 78899999999998865211 1122222222
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
+.....+|++|+|+|+++ +. ....+...+.+. ..|+++|+||+|+... ..+. .....+....
T Consensus 80 -~~~~~~~d~ii~VvD~~~-~~-~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~--~~~~--------~~~~~l~~~l 141 (274)
T 3i8s_A 80 -YILSGDADLLINVVDASN-LE-RNLYLTLQLLEL-----GIPCIVALNMLDIAEK--QNIR--------IEIDALSARL 141 (274)
T ss_dssp -HHHHTCCSEEEEEEEGGG-HH-HHHHHHHHHHHH-----TCCEEEEEECHHHHHH--TTEE--------ECHHHHHHHH
T ss_pred -HHhhcCCCEEEEEecCCC-hH-HHHHHHHHHHhc-----CCCEEEEEECccchhh--hhHH--------HHHHHHHHhc
Confidence 223478999999999983 32 234444555543 2599999999997643 1111 1134444555
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG--GQPYTDEIFAEL 225 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~--~~~~~~~~~~~~ 225 (311)
+.++++ +||.++.|+++|++.|.+.++... ...|..++...+
T Consensus 142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence 777776 788999999999999988765432 223555543333
No 15
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1.2e-20 Score=161.72 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=115.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|++|||||||+|+|+|... .....+++|.......+.+ .+..+.||||||+.+...... .+.+.. .+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~~~~~~-~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI--DELIAR-NF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH--HHHHHH-HH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH--HHHHHH-Hh
Confidence 48999999999999999999999875 3335677888888888888 888999999999987544322 121221 22
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
....++|++++|+|+++ .. ....++..+.+. + ..|+++|+||+|+... ... ......+....+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~~-~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~--~~~--------~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-LM-RNLFLTLELFEM-E---VKNIILVLNKFDLLKK--KGA--------KIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-HH-HHHHHHHHHHHT-T---CCSEEEEEECHHHHHH--HTC--------CCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCc-ch-hhHHHHHHHHhc-C---CCCEEEEEEChhcCcc--ccc--------HHHHHHHHHHcCC
Confidence 22468999999999983 32 222333333332 2 1599999999997633 111 1113455556677
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
++++ +|+.++.|+.++++.+...+...
T Consensus 141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 141 PVIP------TNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CEEE------CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cEEE------EEeCCCCCHHHHHHHHHHHHhcc
Confidence 7776 78899999999999999887653
No 16
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.5e-21 Score=158.83 Aligned_cols=170 Identities=18% Similarity=0.090 Sum_probs=107.0
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
-++...+..++|+|+|.+|+|||||+|+|++...........+.+.......+.. ....+.||||||..+.
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~-------- 85 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERF-------- 85 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGG--------
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhh--------
Confidence 3344455679999999999999999999998764222222233333332222222 3458999999996542
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+
T Consensus 86 ---~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~v~~~---------~~ 151 (192)
T 2fg5_A 86 ---HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSDIREVPLK---------DA 151 (192)
T ss_dssp ---GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HH
T ss_pred ---HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccccccCHH---------HH
Confidence 1222334678899999999985433222 3455556554422 3599999999998643111111 13
Q ss_pred HHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+....+..++. +|+.++.|++++++.|.+.+.
T Consensus 152 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 152 KEYAESIGAIVVE------TSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHcCCEEEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 4455555666655 788889999999999987653
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=3.8e-21 Score=163.22 Aligned_cols=161 Identities=14% Similarity=0.172 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKEIVKCI 98 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~~~~~~ 98 (311)
++|+|+|.+|||||||+|+|+|... ....++++|.......+.+ .+..+.||||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~--~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ--RVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE--EEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CccCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 5899999999999999999999875 3334578888888888887 888999999999987653210 1222233222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.....+|++|+|+|+++ +. ....+...+.+ ...|+++|+||+|.... ..+. .....+....+
T Consensus 79 -~~~~~~d~vi~VvDas~-~~-~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg 140 (256)
T 3iby_A 79 -VIDLEYDCIINVIDACH-LE-RHLYLTSQLFE-----LGKPVVVALNMMDIAEH--RGIS--------IDTEKLESLLG 140 (256)
T ss_dssp -HHHSCCSEEEEEEEGGG-HH-HHHHHHHHHTT-----SCSCEEEEEECHHHHHH--TTCE--------ECHHHHHHHHC
T ss_pred -HhhCCCCEEEEEeeCCC-ch-hHHHHHHHHHH-----cCCCEEEEEEChhcCCc--CCcH--------HHHHHHHHHcC
Confidence 11278999999999983 22 22233333332 23599999999997643 1111 11344445557
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.++++ +||.++.|+++|++.|.+.
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVIP------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHTC
T ss_pred CCEEE------EECCCCCCHHHHHHHHHhh
Confidence 77776 8899999999999999887
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=154.59 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=109.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ .+ ..+.+|||||.....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 72 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR----------- 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--CccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh-----------
Confidence 45699999999999999999999988752 233345555555566666 55 579999999955422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ..+.. .....+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~~ 140 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPER--KVVET-------EDAYKFA 140 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGG--CCSCH-------HHHHHHH
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchh--cccCH-------HHHHHHH
Confidence 223445788999999999985433333 334555554432 3699999999997654 21111 1123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+.+++. +|+.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 141 GQMGIQLFE------TSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 555666665 7888999999999999877643
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=9e-21 Score=150.59 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++..... ...++.+.......+.+ ++. .+.+|||||..+ +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND--KHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS--SCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc--CCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhh
Confidence 45899999999999999999999876422 12223333333334444 333 788999999654 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+....+. ..|+++|+||+|+........+ ....+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQ---------EAESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 34556789999999999985433222 3455556555433 3599999999998654111111 1344555
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|+++++++|.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence 55666655 788889999999999987664
No 20
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=2e-21 Score=155.63 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=109.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+|+|.+|+|||||+|+|++..... ...++.|.......+.+ ++..+.+|||||..+... .
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~ 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE--QEAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTT-----------M 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC--SSCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSC-----------S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc--CCCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHH-----------H
Confidence 456899999999999999999999877532 22334444555555666 788999999999766432 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++|+|+|++++........+..+.. ...|+++|+||+|+.......+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 2345778999999999986666555555544322 2358999999999875421222222221 00011111
Q ss_pred C--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 178 D--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 178 ~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+ ..++. +||.++.|+++++++|.+.+..
T Consensus 142 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIFCK------LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEEEE------CCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccEEE------EecCCCCCHHHHHHHHHHhhhh
Confidence 2 13333 7888899999999999887754
No 21
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.85 E-value=1.6e-20 Score=153.14 Aligned_cols=175 Identities=12% Similarity=0.049 Sum_probs=108.1
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+++....++|+|+|.+|+|||||+|+|++....... ...|.......+.. .+..+.||||||...
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~--------- 75 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK-GRVAFTVFDMGGAKK--------- 75 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE-TTEEEEEEEECCSGG---------
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe-CCEEEEEEECCCCHh---------
Confidence 34566778899999999999999999999998753211 12233344455555 788999999999654
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhC------CCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFG------KKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+...+..++..+|++|+|+|++++.+-.. ..++..+..... .....|+++|+||+|+... ....+....
T Consensus 76 --~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~ 151 (199)
T 4bas_A 76 --FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI 151 (199)
T ss_dssp --GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred --HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH
Confidence 33344566889999999999985533222 223333222110 0013599999999998765 333333222
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
. .+..+....+..++. +||.++.|+++++++|.+.+...
T Consensus 152 ~---~~~~~~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 152 L---DLTTLMGDHPFVIFA------SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp H---THHHHHTTSCEEEEE------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred h---cchhhccCCeeEEEE------eeCCCccCHHHHHHHHHHHHHHH
Confidence 0 012222333444444 78888999999999999877553
No 22
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=4.9e-21 Score=153.35 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+..++|+|+|.+|+|||||+|+|++....... .+..+.......+.. .+ ..+.||||||....
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERF----------- 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGT-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEE-CCeEEEEEEEECCCChHh-----------
Confidence 345799999999999999999999987652221 222222222333333 33 47899999995542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+..+
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 146 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQRDVTYE---------EAKQF 146 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHH
Confidence 1222334567899999999985533333 3455556555433 3599999999998643111111 13445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
....+..++. +|+.++.|+++++++|.+.+
T Consensus 147 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 147 AEENGLLFLE------ASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 5555666665 78888999999999988765
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=7.7e-21 Score=149.62 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++.... .....++.|.......+.+ .+..+.+|||||...... ....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987632 1223345566666666777 788999999999876432 12334444455
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|+++||+|++++++..+..+...+.. . ..|+++|+||+|+.... .... .+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~~-~~~~------------~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRR-K----GKPVILVATKVDDPKHE-LYLG------------PLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-H----TCCEEEEEECCCSGGGG-GGCG------------GGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHh-c----CCCEEEEEECcccccch-HhHH------------HHH-hCCCC
Confidence 6788999999999997777777666666665 2 25899999999976441 1111 111 2233
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.++. +|+.++.|+++++++|.+.+
T Consensus 137 ~~~~------~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DPIP------TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred CeEE------EecccCCChHHHHHHHHHhC
Confidence 4444 78889999999999987653
No 24
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=157.12 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=103.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
......++|+|+|.+|+|||||+|+|++...+... ...|.......+.+ ++..+.||||||....
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~----------- 80 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY----------- 80 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT-----------
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH-----------
Confidence 34557799999999999999999999987632222 22344455566666 7789999999996652
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ...++. ..
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~---------~~ 149 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKV---------SQ 149 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHH---------HH
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHH---------HH
Confidence 2223455778899999999985422222 2333333332110 023599999999998754 222221 11
Q ss_pred HH--Hh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 173 IL--QL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 173 ~~--~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+ .. .+..++. +||.++.|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 150 LLCLENIKDKPWHICA------SDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHTGGGCCSSCEEEEE------CBTTTTBTHHHHHHHHHHHC
T ss_pred HhChhhccCCceEEEE------ccCCCCcCHHHHHHHHHHHH
Confidence 12 11 1223333 78888999999999998765
No 25
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=2.7e-21 Score=153.52 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...........+.+... ..+.+. ....+.+|||||+... ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence 45899999999999999999999877432222222333222 233331 2357899999997542 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+.....+ ..|+++|+||+|+... ..+.. .....+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~~ 140 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV--REVME-------RDAKDYADS 140 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG--CCSCH-------HHHHHHHHH
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccc--cccCH-------HHHHHHHHH
Confidence 2334678899999999985544333 4455666654332 3589999999998754 22110 012344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+.+++. +|+.++.|++++++.|.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 141 IHAIFVE------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred cCCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 5666655 78888999999999998754
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=153.16 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=112.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++ ..+.||||||.....
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 79 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT--ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR---------- 79 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC----------
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh----------
Confidence 345689999999999999999999987652 222344555555555655 55 479999999965422
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+
T Consensus 80 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~--~~~~~-------~~~~~~ 147 (196)
T 3tkl_A 80 -TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK--KVVDY-------TTAKEF 147 (196)
T ss_dssp -TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT--CCSCH-------HHHHHH
T ss_pred -hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--cccCH-------HHHHHH
Confidence 122334678899999999985433222 4455666655433 3599999999998755 22111 113445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.+++. +||.++.|+++++++|.+.+..
T Consensus 148 ~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 148 ADSLGIPFLE------TSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 5566767766 7888899999999999887754
No 27
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=9e-21 Score=161.16 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=114.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+|+|+|.... ....+++|.......+.. .+..+.||||||+.+...... .+.+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence 3589999999999999999999998753 334568888887777777 788999999999987643321 12222222
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
. ....+|++++|+|++ .+... ..++..+.+ ...|+++|+||+|+... ..+ ......+....+
T Consensus 79 ~-~~~~~d~ii~V~D~t-~~~~~-~~~~~~l~~-----~~~pvilv~NK~Dl~~~--~~i--------~~~~~~l~~~lg 140 (258)
T 3a1s_A 79 L-LKGDADLVILVADSV-NPEQS-LYLLLEILE-----MEKKVILAMTAIDEAKK--TGM--------KIDRYELQKHLG 140 (258)
T ss_dssp H-HHSCCSEEEEEEETT-SCHHH-HHHHHHHHT-----TTCCEEEEEECHHHHHH--TTC--------CBCHHHHHHHHC
T ss_pred H-hhcCCCEEEEEeCCC-chhhH-HHHHHHHHh-----cCCCEEEEEECcCCCCc--cch--------HHHHHHHHHHcC
Confidence 1 125789999999998 44322 223333332 23599999999997643 111 112455556667
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++. +||.++.|+++|++.|.+...
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 IPVVF------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp SCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence 77776 788899999999999998775
No 28
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=5.3e-21 Score=151.75 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=102.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...........+.+ .....+.+. .+..+.+|||||..+. ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA--FLTQTVCLDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 35899999999999999999999766422222222222 222333331 2447899999996542 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDFQ---------EAQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccccCHH---------HHHHHHHH
Confidence 3334678899999999985433222 3444555554333 3589999999998643111111 13344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.+..++. +||.++.|+++++++|.+.+
T Consensus 141 ~~~~~~~------~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 141 NSLLFME------TSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHTS
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 5666655 78888999999999998754
No 29
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=152.43 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.+.+..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ ++ ..+.||||||...
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~---------- 87 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCE--ACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQER---------- 87 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG----------
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCc--CCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHH----------
Confidence 445567899999999999999999999876522 22233344444455555 44 3789999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+...+..++..+|++|+|+|++++.+..+ ..++..+...... ..|+++|+||+|+........+ ...
T Consensus 88 -~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilV~NK~Dl~~~~~v~~~---------~~~ 155 (192)
T 2il1_A 88 -FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCETDREITRQ---------QGE 155 (192)
T ss_dssp -GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHH
T ss_pred -HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHH
Confidence 12223333556799999999985544333 3445556554432 3599999999998643111111 123
Q ss_pred HHHHhc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 172 EILQLC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 172 ~~~~~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.... +..++. +||.++.|+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 156 KFAQQITGMRFCE------ASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHTSTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333432 444544 788899999999999987664
No 30
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=2.6e-20 Score=152.34 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=104.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC----------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG---------------------------- 69 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~---------------------------- 69 (311)
+..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ .+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHE--NTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSCEEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCC--CcCccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 456999999999999999999999876421 11222222333333333 22
Q ss_pred -----------ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCc
Q 021534 70 -----------QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKI 137 (311)
Q Consensus 70 -----------~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~ 137 (311)
..+.||||||...... ....++..+|++|||+|++++.+..+ ..++..+....+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 6799999999654321 12234678899999999985543333 344555555443
Q ss_pred cCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 138 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 138 ~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.|+++|+||+| ........+ .+..++...+.+++. +||.++.|+.+++++|.+.+.+
T Consensus 148 -~piilv~NK~D-~~~~~~~~~---------~~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 -YIIILVANKID-KNKFQVDIL---------EVQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CEEEEEEECTT-CC-CCSCHH---------HHHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCC-cccccCCHH---------HHHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 59999999999 432111222 134455556666665 7888899999999999876643
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=4.2e-20 Score=149.06 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||..+ +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK--DDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC--TTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 34599999999999999999999987642 222233343444444555 44 4889999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDADREVTFL---------EASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHHH
Confidence 445667889999999999985433322 3445555554332 3599999999998643111111 123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +|+.++.|+.++++.+.+.+.
T Consensus 143 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 143 QENELMFLE------TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555666655 788889999999999887654
No 32
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=154.46 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+..++|+|+|.+|+|||||+|+|++........ +..+.......+... .+..+.||||||......
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 89 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA----------- 89 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------
Confidence 345899999999999999999999876522222 222222222233331 234789999999876421
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+......... ....+..
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 158 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTE---------EARMFAE 158 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHH---------HHHHHHH
Confidence 12233677899999999985433222 334444443322 24599999999998653111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|++++++.|.+.+.
T Consensus 159 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 159 NNGLLFLE------TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666655 688888999999999887653
No 33
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=5.3e-20 Score=147.59 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ...++.+.......+.. ++. .+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 4569999999999999999999998765221 12233333333333344 443 789999999553 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++++|+|++++.+..+ ..++..+..... ...|+++|+||+|+.........+ ...+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRED---------GEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHH---------HHHHH
Confidence 334556778999999999985433332 345556665543 235999999999987541111111 23344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 144 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 144 KEYGLPFME------TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444666665 7888899999999999887643
No 34
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.7e-20 Score=151.06 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=108.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++. .+.||||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP--PGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--TTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC--CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 4589999999999999999999987642 122233334444445555 553 789999999543 344
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~---------~~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDLAERREVSQQ---------RAEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHHH
Confidence 45667889999999999985433222 3455556554432 3589999999998643111111 1233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++..|.+.+..
T Consensus 160 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 160 AQDMYYLE------TSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44666665 7888999999999998876643
No 35
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.2e-20 Score=149.99 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|.+|+|||||+|++++.... . ...|.......+.+ .+..+.+|||||... +...+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-T----TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-C----cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHH
Confidence 4599999999999999999999876642 1 12234455556666 788999999999654 22334
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH-HHHH
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-EILQ 175 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 175 (311)
..++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... +. ..+.
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~ 139 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPALK 139 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCT
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhcc
Confidence 566789999999999985533222 11222222221 123599999999998765 222222111 00 0011
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+++++++|.+.+.+
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 140 DRKWQIFK------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TSCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEE------CcCCCCcCHHHHHHHHHHHHhh
Confidence 11223333 7888899999999999887753
No 36
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=3.1e-20 Score=152.52 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=109.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++. .+.||||||......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT--NDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT---------- 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC--TTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH----------
Confidence 34589999999999999999999987652 222233344444444555 443 799999999765322
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ ....+.
T Consensus 73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 140 (206)
T 2bcg_Y 73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDKRVVEYD---------VAKEFA 140 (206)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHH
Confidence 23445788999999999985443333 3445555554432 3599999999998754111111 123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+.+++. +||.++.|+++++.+|.+.+.+
T Consensus 141 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 141 DANKMPFLE------TSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HHTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 555666665 7888899999999999887654
No 37
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=7.9e-21 Score=154.30 Aligned_cols=163 Identities=13% Similarity=0.068 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||......
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 85 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS--------- 85 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC---------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh---------
Confidence 44678999999999999999999998764222 1222233333344444 44 4889999999654321
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+
T Consensus 86 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~--~~v~~-------~~~~~~ 152 (191)
T 2a5j_A 86 --ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESR--RDVKR-------EEGEAF 152 (191)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG--CCSCH-------HHHHHH
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCc--cccCH-------HHHHHH
Confidence 12234567899999999985433322 3455555554332 3599999999998643 11110 012344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+..++. +||.++.|+++++++|.+.+.
T Consensus 153 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 153 AREHGLIFME------TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4455666665 688888999999999887653
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=2.4e-20 Score=152.85 Aligned_cols=161 Identities=13% Similarity=0.081 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++........ +..+.......+.. . ...+.||||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYR-NDKRIKLQIWDTAGLER-----------YRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEE-CCeEEEEEEEECCCchh-----------hcc
Confidence 45899999999999999999999887522222 22222333333333 3 34889999999653 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..+.. .....+..
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 141 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE--RVVSS-------ERGRQLAD 141 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTS--CCSCH-------HHHHHHHH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcc--cccCH-------HHHHHHHH
Confidence 45566788999999999985433222 3445555554322 3599999999998754 21110 11334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.++..++. +||.++.|+.+++++|.+.+.
T Consensus 142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 142 HLGFEFFE------ASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HCCCeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 55666665 788889999999999887654
No 39
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.84 E-value=4.8e-21 Score=153.07 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=108.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHH-HHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSK-EIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~-~~~~~ 97 (311)
+..+|+|+|.+|+|||||+|+|++..... ....+++|.......+.+ ++..+.+|||||+.+... .+.. .+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~- 76 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIER- 76 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcce-eeCCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHH-
Confidence 34899999999999999999999876321 122345566665566666 778899999999876421 1111 1221
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
...++..+|++++|+|++++.+..+..++..+...... ..|+++|+||+|+.... .. +. ...
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~-~~---~~------------~~~ 138 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-LG---MS------------EVN 138 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-CE---EE------------EET
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCcch-hh---hh------------hcc
Confidence 12345788999999999866665556666666665432 35999999999975320 00 00 011
Q ss_pred CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 178 DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 178 ~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+..++. +||.++.|++++++.|.+.+
T Consensus 139 ~~~~~~------~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIR------LSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEE------CCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEE------EeCCCCCCHHHHHHHHHHHh
Confidence 223333 78899999999999998765
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=1.7e-20 Score=150.61 Aligned_cols=163 Identities=19% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++........ ++.+.......+.+ . ...+.||||||....
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~----------- 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE--STIGAAFFSQTLAV-NDATVKFEIWDTAGQERY----------- 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC--CCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGG-----------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCC--CCceeEEEEEEEEE-CCEEEEEEEEeCCCChhh-----------
Confidence 3456899999999999999999999876532222 22222233333333 3 347999999995431
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+.. ...++..+...... ..|+++|+||+|+........+ .+..+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~---------~~~~~ 143 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDARKVTAE---------DAQTY 143 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHH
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccccCCHH---------HHHHH
Confidence 222333467889999999998554422 24555666654432 3589999999998654111111 13444
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+.+++. +|+.++.|+++++++|.+.+.
T Consensus 144 ~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 144 AQENGLFFME------TSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHTTCEEEE------CCSSSCTTHHHHHHHHHHTCC
T ss_pred HHHcCCEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 5555666655 688888999999999987653
No 41
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=1.1e-20 Score=172.91 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.||+|||||+|+|+|..... ....+++|.......+.+ .+..+.||||||+.... .+.+...+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~-v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI-VEDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce-ecCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 589999999999999999999987421 234568888888888888 89999999999987521 12233445666666
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|+|+|++.+++..+..+..++++. .+|+++|+||+|.... ..... ...+. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE----FEREV-------KPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence 78899999999999878888887777777652 2599999999996421 11111 01111 2232
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.|+.+|++.|.+.+++
T Consensus 141 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EPIP------VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEE------EeccCCCCHHHHHHHHHHhccc
Confidence 3343 7999999999999999988764
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=4.7e-21 Score=152.06 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|.+|+|||||+|++++........ +..+.......+.+ ++ ..+.+|||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChhh-----------hhh
Confidence 4899999999999999999999876422222 22233333333344 33 37999999995532 122
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh-hcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+..... ..+. ......+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~v~-------~~~~~~~~~ 139 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQEGGERKVA-------REEGEKLAE 139 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSSCCCCSC-------HHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCccccccccCCC-------HHHHHHHHH
Confidence 3344678899999999985433322 3445555554432 358999999999875410 1110 011233444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +||.++.|+++++++|.+.+
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 140 EKGLLFFE------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 45666665 78888999999999987643
No 43
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=5e-20 Score=150.88 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=106.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||... +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS--ERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC--CCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HH
Confidence 44689999999999999999999977642 111122223333444555 44 4899999999643 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ .+..+.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~~~v~~~---------~~~~~~ 161 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSELREVSLA---------EAQSLA 161 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccccccCHH---------HHHHHH
Confidence 334455778999999999985433222 3455556554432 3599999999998653111111 134455
Q ss_pred HhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 175 QLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 175 ~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+. .++. +||.++.|+++++++|.+.+...
T Consensus 162 ~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 162 EHYDILCAIE------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp HHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 55565 5555 78889999999999998776543
No 44
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=4.7e-20 Score=148.91 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=105.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|++++.. . ... ..|.......+.+ ++..+.+|||||.. .+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-V-DTI---SPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-C-SSC---CCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-C-Ccc---cccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence 567999999999999999999999876 2 211 2233444555666 78899999999953 24445
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ....+.... .. +. .+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~~-~~~~ 151 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-LE--LD-SIRS 151 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCS
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-hC--hh-hccC
Confidence 5667889999999999985543322 222322222111 123599999999998755 333222111 00 00 0001
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +||.++.|+++++++|.+.+.+
T Consensus 152 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 152 HHWRIQG------CSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEE------eeCCCCCCHHHHHHHHHHHHHh
Confidence 1223333 7888899999999999988755
No 45
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=1.9e-20 Score=150.77 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++.... ....++.+.......+.+ ++ ..+.||||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFN--STFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC------------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhh
Confidence 4589999999999999999999976531 111122333344444555 55 5899999999643 333
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+........+ ....+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDKRQVSKE---------RGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSCCCSCHH---------HHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCccCcCCHH---------HHHHHHH
Confidence 34566788999999999985433222 3455555554332 3599999999998754111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +||.++.|+++++..|.+.+.
T Consensus 142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 142 DYGIKFME------TSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666655 788889999999999987664
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=7.4e-20 Score=147.49 Aligned_cols=164 Identities=18% Similarity=0.133 Sum_probs=104.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
+...++|+|+|.+|+|||||+|+|++.... ... .+++.......+.+ .+. .+.||||||..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 79 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----------- 79 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC-CSC--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC-CcC--CCccceEEEEEEEE-CCEEEEEEEEECCCCccc-----------
Confidence 345699999999999999999999987642 211 12222222233344 443 7899999997652
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+......... .+..+
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~ 149 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNR 149 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH---------HHHHH
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH---------HHHHH
Confidence 1122223456799999999984433222 3445555554432 23599999999998653111111 13445
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.+++. +|+.++.|+++++++|.+.+..
T Consensus 150 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 150 AEQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHHTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence 5555666665 7888889999999999877643
No 47
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.84 E-value=1.5e-20 Score=149.24 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++..... ...++.+.......+.+ ++ ..+.||||||......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~----------- 67 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT----------- 67 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC-----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhh-----------
Confidence 35899999999999999999999876422 22233344444445555 44 3789999999654321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+... ....+ ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~--------~~~~~~~ 135 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTAD--------QGEALAK 135 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTC--CSCHH--------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCcC--ccCHH--------HHHHHHH
Confidence 12233567899999999985433222 3555666655432 3599999999998432 11111 1233444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|++++++.|.+.+.+
T Consensus 136 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 136 ELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 55666665 7888899999999999887754
No 48
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=3.9e-20 Score=148.66 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +++.......+.+ ++ ..+.||||||......
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 69 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYD--PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI---------- 69 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC-SCCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCC--CCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence 45699999999999999999999966532 2211 1111122333334 55 3678999999776422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
....++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....+.
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~ 138 (181)
T 3t5g_A 70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE---------EGKALA 138 (181)
T ss_dssp -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH---------HHHHHH
Confidence 12345778999999999984433222 2344444443322 23599999999998644111111 134455
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+.+++..|.+.+..
T Consensus 139 ~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 139 ESWNAAFLE------SSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHTTCEEEE------CCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHhCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 666766665 7889999999999999987754
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.84 E-value=5.1e-20 Score=145.68 Aligned_cols=160 Identities=19% Similarity=0.084 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... ....+.+.. ..+.+ .+ ..+.+|||||... +...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~-~~~~~~~~i~D~~g~~~-----------~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYD---RSIVV-DGEEASLMVYDIWEQDG-----------GRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEE-TTEEEEEEEEECC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceE---EEEEE-CCEEEEEEEEECCCCcc-----------chhh
Confidence 48999999999999999999998764222 122233322 22223 33 3788999999654 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+... ..+... ....+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~~~ 135 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS--REVSVD-------EGRACAVV 135 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS--CCSCHH-------HHHHHHHH
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc--cccCHH-------HHHHHHHH
Confidence 3445678899999999985433222 233444443221 123599999999998754 221111 12334445
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.+++. +||.++.|++++++.|.+.+..
T Consensus 136 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFIE------TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred hCCcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence 5666665 7889999999999999887643
No 50
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=2.6e-20 Score=170.12 Aligned_cols=178 Identities=15% Similarity=0.204 Sum_probs=114.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+++|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.||||||+.+.....+.+ +.+...
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~-e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETT-EKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCC-SHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchH-HHHHHH
Confidence 4568999999999999999999999875322 23456777776667777 88899999999986533211100 111111
Q ss_pred -HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 -IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 -~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++.+..+..++..+.. ...|+++|+||||+.+......++.... +...+..
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~ 319 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQF 319 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGG
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHHhccc
Confidence 1123556799999999998888888777666654 2359999999999886522222322222 2222222
Q ss_pred -cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 177 -CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 177 -~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
.+.+++. +||.++.|+.++++.+.+.+.....
T Consensus 320 ~~~~~~~~------~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 320 LDYAPILF------MSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCCEEE------EecccCCCHHHHHHHHHHHHHHhhc
Confidence 2345555 7899999999999999988765443
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=152.66 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=103.1
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
.|....++|+|+|.+|+|||||+|+|++.... . ...+...... ...+.+. ....+.||||||......
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~-------- 87 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-E-GYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSI-------- 87 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCC-S-CCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCC--------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-C-CCCCccceEE-EEEEEECCEEEEEEEEECCCccchHH--------
Confidence 45567899999999999999999999987652 1 1111111111 2222221 345789999999765432
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++-+... ..++..+...... ...|+++|+||+|+... ..+.. .....
T Consensus 88 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~-------~~~~~ 154 (201)
T 3oes_A 88 ---LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE--REVQA-------VEGKK 154 (201)
T ss_dssp ---CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG--CCSCH-------HHHHH
T ss_pred ---HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc--cccCH-------HHHHH
Confidence 23445788999999999984433222 2333333332221 23599999999998744 22111 01234
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +||.++.|++++++.|.+.+..
T Consensus 155 ~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 155 LAESWGATFME------SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44555666665 7889999999999999987755
No 52
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=1.8e-20 Score=152.82 Aligned_cols=179 Identities=12% Similarity=0.047 Sum_probs=99.7
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
..+.+....++|+|+|.+|+|||||+|.+++...... ......+.......+.......+.||||||........ +
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~ 87 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---F 87 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGGG-GGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---C
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcc-eeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---h
Confidence 4455677889999999999999999999998643211 11111222222211211134689999999976532211 0
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
. ...++.++|++|||+|+++++......+..++..........|+++|+||+|+... ....+...........
T Consensus 88 ~-----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~ 160 (196)
T 3llu_A 88 D-----YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRAND 160 (196)
T ss_dssp C-----HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHH
T ss_pred h-----cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHH
Confidence 0 02235568999999999966444444555566654211224599999999998754 1111000000000122
Q ss_pred HHHH----hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 172 EILQ----LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 172 ~~~~----~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.+.. ..+..++. +||.+ .|+.+++..|.+.
T Consensus 161 ~~~~~~~~~~~~~~~e------~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 161 DLADAGLEKLHLSFYL------TSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHTTCTTSCEEEEE------ECTTS-THHHHHHHHHHHH
T ss_pred HHHHhhhhcCCcceEE------EEech-hhHHHHHHHHHHH
Confidence 3333 23334444 78889 9999999988764
No 53
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.5e-20 Score=147.27 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+|+|.+|+|||||+|+|++...........+.+. ...+.. .+ ..+.+|||||..+.. .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 66 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQFP-----------A 66 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSCH-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhhH-----------H
Confidence 358999999999999999999998764222111112111 111222 33 378999999976531 1
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+... ..+... ....+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~ 137 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALAR 137 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHH
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHH
Confidence 12223445799999999985433222 4455566665443234699999999998654 221110 1233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 138 TWKCAFME------TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHTC
T ss_pred HhCCeEEE------ecCCCCcCHHHHHHHHHHHH
Confidence 44555555 78888999999999998765
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.83 E-value=1.3e-19 Score=143.22 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=101.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|++|+|||||+|++++..... ... +++.......+.+ .+. .+.||||||..+. ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYD--PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCC--TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCC--CCcceeEEEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence 4899999999999999999999776421 111 1122222333344 443 5899999996652 111
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+.. .....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~-------~~~~~~~~~ 137 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE--REVSS-------SEGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG--CCSCH-------HHHHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc--ccCCH-------HHHHHHHHH
Confidence 2223456799999999985433222 3344444444322 23699999999997643 21111 012334444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +|+.++.|+++++++|.+.+.
T Consensus 138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFME------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 5666665 788999999999999987764
No 55
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=1.6e-19 Score=144.39 Aligned_cols=163 Identities=16% Similarity=0.066 Sum_probs=106.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++..... ...++.+.......+.+ ++ ..+.||||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT--QLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hh
Confidence 456899999999999999999999876421 12223333333444444 44 3899999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...++ ...
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence 445567888999999999985433322 3455555554431 1235999999999986331 11111 233
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +|+.++.|++++++.|.+.+.
T Consensus 141 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 141 WCRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333 33455555 788889999999999987664
No 56
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=145.08 Aligned_cols=164 Identities=20% Similarity=0.127 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...... ..+.+.+.. ...+.+ ++. .+.+|||||..... ..
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~ 68 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEKLD---------KS 68 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEE--EEEEEE-TTEEEEEEEECCC----------------C
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCcccccee--EEEEEE-CCEEEEEEEEecCCCCccc---------hh
Confidence 3468999999999999999999998875222 223344332 233344 443 78899999976421 11
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++ ...+.
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 138 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACA 138 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence 122345678999999999985433222 234444444321 1235999999999987541111111 22333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|+++++++|.+.+.
T Consensus 139 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 139 VVFDCKFIE------TSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHTSEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 444555655 788899999999999987664
No 57
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=149.98 Aligned_cols=184 Identities=15% Similarity=0.064 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCC
Q 021534 2 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPG 79 (311)
Q Consensus 2 m~~~~~~~~~~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG 79 (311)
||.+..........+....++|+|+|.+|+|||||+|++++... .... .+++.......+.+ ++. .+.||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEY--IPTAFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCCC--CCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence 45555444334455667789999999999999999999998763 2221 12222222233444 554 677999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhc
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDET 157 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~ 157 (311)
...... .+..++.++|++|+|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ..
T Consensus 78 ~~~~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~ 141 (201)
T 2q3h_A 78 QDEFDK-----------LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED--VK 141 (201)
T ss_dssp STTCSS-----------SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC--HH
T ss_pred CHHHHH-----------HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc--hh
Confidence 865422 133457889999999999855443332 45566666543 3699999999998754 21
Q ss_pred HHHHhhh-----cCCchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 158 LEDYLGR-----ECPKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 158 ~~~~~~~-----~~~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+.. ........+....+. .++. +||.++.|++++++.|.+.+..
T Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence 1111100 001123344444454 5554 7888999999999998876643
No 58
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=4.3e-20 Score=169.68 Aligned_cols=182 Identities=14% Similarity=0.201 Sum_probs=120.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.||||||+.+....... .+.+..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHH
Confidence 34679999999999999999999998864322 23456666665666666 8889999999998653211100 011111
Q ss_pred H-HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 C-IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~-~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
. ...++..+|++|+|+|++++++..+..++..+.+ . ..|+++|+||||+........++.... +...+.
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~ 338 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-A----GKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 338 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCG
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-c----CCCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcc
Confidence 1 1123566799999999998888888888877765 2 259999999999886532333333322 333332
Q ss_pred hc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCC
Q 021534 176 LC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPY 217 (311)
Q Consensus 176 ~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~ 217 (311)
.. +.+++. +||+++.|++++++.+.+.+.....+.-
T Consensus 339 ~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 339 FLDYAPILF------MSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp GGTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred cCCCCCEEE------EcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 22 244555 7899999999999999988766544433
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=1.7e-19 Score=146.30 Aligned_cols=163 Identities=14% Similarity=0.070 Sum_probs=106.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC-----------ceEEEEeCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG-----------QVVNVIDTPGLFDSSA 85 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~-----------~~l~liDTPG~~~~~~ 85 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.... ...+.. .+ ..+.||||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~--- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER--- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG---
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH---
Confidence 4569999999999999999999998664211 1122222222 223333 32 4899999999643
Q ss_pred ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 86 DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+...+..++..+|++|+|+|++++.+... ..++..+...... ...|+++|+||+|+........+
T Consensus 83 --------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~----- 148 (195)
T 3bc1_A 83 --------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLEDQRAVKEE----- 148 (195)
T ss_dssp --------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGGGCCSCHH-----
T ss_pred --------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHH-----
Confidence 33345566889999999999985444333 3455555554321 23599999999998653111111
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..+....+.+++. +|+.++.|++++++.|.+.+.
T Consensus 149 ----~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 ----EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ----HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 134444555666665 788888999999999987664
No 60
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=2.2e-20 Score=151.32 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=101.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
.....++|+|+|.+|+|||||+|+|++...... ...|.......+.. .+..+.||||||..+ +.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~ 81 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FR 81 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence 345679999999999999999999998764211 12233344445555 788999999999532 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..+..++..+|++|||+|++++-+... ...++...... ....|+++|+||+|+... ....+.... .. . ..
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~-~~ 153 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-MN--L-SA 153 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--G-GG
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-hC--h-hh
Confidence 334445678999999999984433222 22223332221 123599999999998754 222222111 00 0 00
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
....+..++ .+||.++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~~------~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 154 IQDREICCY------SISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCSSCEEEE------ECCTTTCTTHHHHHHHHHHTC
T ss_pred hccCCeeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 001122233 378888999999999998755
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=156.12 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=99.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|+|++...........+.+ .....+.+ ++ ..+.||||||..+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------- 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIV-DGERTVLQLWDTAGQERF----------- 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-----------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEE-CCEEEEEEEEECCCCcch-----------
Confidence 4467999999999999999999999876422211122222 22233333 33 46999999996642
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ..... ...........+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~--~~~~~-~~~v~~~~~~~~ 165 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDT--AATEG-QKCVPGHFGEKL 165 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHTT-CCCCCHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc--ccccc-ccccCHHHHHHH
Confidence 1122233556799999999985443333 3455556554332 3599999999997632 00000 000001112344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
....+..++. +||.++.|+.+++.+|.+.+.
T Consensus 166 ~~~~~~~~~~------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 166 AMTYGALFCE------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 4555666665 788889999999999987663
No 62
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=2.2e-20 Score=152.01 Aligned_cols=164 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEeeCCc--eEEEEeCCCCCCCCCChHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSK 92 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~ 92 (311)
.....++|+|+|.+|+|||||+|++++.... .. ..+ |..... ..+.. ++. .+.||||||...
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~-~~~--t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~---------- 83 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIP-TA-YVP--TVFENFSHVMKY-KNEEFILHLWDTAGQEE---------- 83 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCC-SS-CCC--CSEEEEEEEEEE-TTEEEEEEEEEECCSGG----------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCC-Cc-cCC--eeeeeeEEEEEE-CCEEEEEEEEECCCcHH----------
Confidence 3456799999999999999999999987641 11 111 222222 22333 444 569999999543
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
+......++..+|++|+|+|++++.+..+ ..++..+..... ..|+++|+||+|+.......+. ....
T Consensus 84 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~-------~~~~ 152 (194)
T 3reg_A 84 -YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRKDGSDDVT-------KQEG 152 (194)
T ss_dssp -GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCCTTTTCCC-------HHHH
T ss_pred -HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccCCCCccc-------HHHH
Confidence 23344556889999999999985543333 345556665432 2599999999998753111111 1113
Q ss_pred HHHHHhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 171 ~~~~~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+....+.. ++. +||.++.|++++++.|.+.+..
T Consensus 153 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 153 DDLCQKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHh
Confidence 4455555655 555 7889999999999999887654
No 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=2.9e-20 Score=153.33 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=107.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++..... ...++.+.......+.+ ++ ..+.||||||......
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-------- 84 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT-------- 84 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC--------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH--------
Confidence 34557999999999999999999999876422 22234444455555555 55 4799999999654321
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+... ....+ ....
T Consensus 85 ---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~--~~~~~--------~~~~ 149 (213)
T 3cph_A 85 ---ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETR--VVTAD--------QGEA 149 (213)
T ss_dssp ---CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSC--CSCHH--------HHHH
T ss_pred ---HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc--ccCHH--------HHHH
Confidence 12334678899999999985433222 3555666655432 3599999999998432 11111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+.+++. +|+.++.|+.+++++|.+.+.+
T Consensus 150 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 150 LAKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44445656665 7888889999999999876643
No 64
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=7.2e-21 Score=153.19 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=98.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.+....++|+|+|.+|+|||||+|+|++... .......+.+ ...+.+ ++..+.||||||....
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~----------- 78 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN----VEEIVI-NNTRFLMWDIGGQESL----------- 78 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS----CEEEEE-TTEEEEEEEESSSGGG-----------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee----eEEEEE-CCEEEEEEECCCCHhH-----------
Confidence 3455789999999999999999999998875 2212222322 234455 7789999999997542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
...+..++..+|++|||+|++++.+... ..++..+..... ....|+++|+||+|+... ....+.... .. +. .
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~-~ 151 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-LK--LT-S 151 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-G
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-hC--cc-c
Confidence 2233456788999999999985533332 222322222110 133599999999998754 222221111 00 00 0
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
....+..++. +||.++.|+++++++|.+
T Consensus 152 ~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 152 IKDHQWHIQA------CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CCSSCEEEEE------CBTTTTBTHHHHHHHHHT
T ss_pred ccCCceEEEE------ccCCCCcCHHHHHHHHHh
Confidence 0111223333 788889999999998864
No 65
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=150.39 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..++.+.......+.+ ++ ..+.||||||... +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FR 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HH
Confidence 4568999999999999999999998765222 2223333333444444 44 5899999999432 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ..|+++|+||+|+......... ....+.
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~v~~~---------~~~~~~ 157 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPEREVTFL---------EASRFA 157 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccccccCHH---------HHHHHH
Confidence 223345678999999999985433322 3445555544332 3599999999998643111111 123344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|+++++.+|.+.+.
T Consensus 158 ~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 158 QENELMFLE------TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 555666655 788889999999999887654
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2e-20 Score=151.91 Aligned_cols=165 Identities=13% Similarity=0.060 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
+..++|+|+|.+|+|||||+|+|++...........+.+.......+.. .+..+.||||||. +.+...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~-----------~~~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQ-----------ERYRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHH-----------HHCHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCCh-----------HHHHHH
Confidence 4568999999999999999999998654222111223333333322222 3457999999993 334444
Q ss_pred HHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++|+|+|++++-+.. ...++..+...... ..|+++|+||+|+......... ....+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEERVVPTE---------KGQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 555678899999999998443322 24456666654422 3599999999997643111111 12334455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +|+.++.|+.++++.|.+.+.+
T Consensus 158 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFFE------ASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 5666665 7888999999999999887644
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.83 E-value=7.8e-20 Score=148.09 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=102.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~ 91 (311)
+.+....++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||..+
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~--------- 81 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER--------- 81 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH---------
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh---------
Confidence 34455679999999999999999999998764222 2223333344444444 44 4899999999432
Q ss_pred HHHH-HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 92 KEIV-KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 92 ~~~~-~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
+. ..+..++..+|++|+|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+.. ..
T Consensus 82 --~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~v~~-------~~ 149 (189)
T 1z06_A 82 --FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA--IQVPT-------DL 149 (189)
T ss_dssp --HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG--CCSCH-------HH
T ss_pred --hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceeCH-------HH
Confidence 22 233445678999999999985433222 3455555554422 23599999999998643 11110 01
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhH---HHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRT---EQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~---~~i~~l~~~i~~~~ 209 (311)
...+....+..++. +|+.++ .++.+++..|.+.+
T Consensus 150 ~~~~~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 150 AQKFADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHHHHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHHHHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHH
Confidence 23444555666665 677777 88999999887655
No 68
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=2.3e-20 Score=149.47 Aligned_cols=165 Identities=16% Similarity=0.094 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC---ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG---QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
...++|+|+|.+|+|||||+|+|++........ +..+.......+.+ .+ ..+.||||||......
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~--------- 71 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGK--------- 71 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCT---------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccc---------
Confidence 356999999999999999999999876421111 12223344444555 44 5899999999765321
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+..++..+|++++|+|++++.+... ..++..+..........| +++|+||+|+........+ ....
T Consensus 72 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~---------~~~~ 140 (178)
T 2hxs_A 72 --MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE---------KHLR 140 (178)
T ss_dssp --THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred --hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH---------HHHH
Confidence 12233677899999999985433322 345555555432111234 8999999998643111111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +||.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 141 FCQENGFSSHF------VSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 44445656655 7888899999999999887644
No 69
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=1.6e-19 Score=173.16 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCc-------------ceeE--------------------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGV-------------TKTC-------------------------- 59 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~-------------T~~~-------------------------- 59 (311)
..++|+|+|.+|+|||||+|+|+|....++...+... |...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 5689999999999999999999999875554332210 1100
Q ss_pred -------------EEEEEEeeCC----ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH
Q 021534 60 -------------EMQRTMLKAG----QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE 122 (311)
Q Consensus 60 -------------~~~~~~~~~~----~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~ 122 (311)
....+.+ .. ..+.||||||+.++.. ....+..+++.+|++|||+|++++++..+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~-p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEY-PLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEE-CCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHhhccccccccceEEEEEc-cchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0000111 00 4699999999775311 22333445677899999999987788777
Q ss_pred HHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 123 GAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++... .. ....|+++|+||+|+...
T Consensus 219 ~~~l~~~---l~-~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 219 RRYLENY---IK-GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHH---TT-TSCCCEEEEEECGGGGGG
T ss_pred HHHHHHH---HH-hhCCCEEEEEECcccccc
Confidence 6554321 21 123589999999998644
No 70
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.83 E-value=1.9e-19 Score=147.65 Aligned_cols=164 Identities=18% Similarity=0.131 Sum_probs=104.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++.... ... .+++.......+.+ ++. .+.||||||..+.
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~---------- 75 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY---------- 75 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCC-TTC--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCccceEEEEEEEE-CCEEEEEEEEcCCChhhh----------
Confidence 3456799999999999999999999987642 211 12222222333444 443 7899999997652
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
......++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... .+..
T Consensus 76 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~ 144 (206)
T 2bov_A 76 -AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKN 144 (206)
T ss_dssp -HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH---------HHHH
T ss_pred -HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH---------HHHH
Confidence 1112233456799999999984433222 3445555554431 23599999999998754111121 1344
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+..++. +|+.++.|+++++++|.+.+.
T Consensus 145 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 145 RAEQWNVNYVE------TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44555666665 788888999999999987663
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=3.5e-20 Score=148.33 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... ....++.+.......+.+ ++ ..+.||||||.... ..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD--NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF-----------RS 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHH-----------HH
Confidence 3589999999999999999999976642 222334444444455555 44 37999999995532 11
Q ss_pred HHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+.. ...++..+....+. ..|+++|+||+|+.........+ ...+..
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 2223355789999999998543322 23455555554432 35999999999986541111111 233344
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.|++++++.|.+.+
T Consensus 148 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 148 ELNVMFIE------TSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HHTCEEEE------EBTTTTBSHHHHHHHHHHTC
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 44666665 68888899999999988754
No 72
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=9.3e-20 Score=147.24 Aligned_cols=160 Identities=19% Similarity=0.158 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++.... . ...+++.......+.+ ++. .+.||||||..+....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV-D--EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM---------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC-C--CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH----------
Confidence 4689999999999999999999987642 1 1122233333333444 554 4778999997653221
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ....+. ...+..
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~ 136 (189)
T 4dsu_A 69 -RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLAR 136 (189)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC--SSCHHH--------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc--ccCHHH--------HHHHHH
Confidence 1222445799999999985433222 3444555554322 34699999999998744 221111 334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +||.++.|+++++++|.+.+.
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666666 788889999999999987764
No 73
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.83 E-value=1e-19 Score=143.92 Aligned_cols=161 Identities=18% Similarity=0.129 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
+.++|+++|.+|+|||||+|+|++.... ... .+++.......+.+ ++ ..+.||||||..+. ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV-EDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC-SCC--CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC-CCC--CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 3589999999999999999999987642 211 11222222223334 44 37899999996542 12
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
.+..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+......... ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH---------HHHHHHH
Confidence 22333556799999999984433222 3445555554432 23599999999998654111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+.+++. +|+.++.|+++++++|.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence 55666665 788888999999999987663
No 74
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=3.9e-20 Score=146.50 Aligned_cols=159 Identities=18% Similarity=0.082 Sum_probs=103.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+ ++ ..+.||||||......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDA----------- 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHH-----------
Confidence 46899999999999999999999876421 22222333343444444 43 3789999999654321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....++..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+......... ....+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNE---------EAEGLAK 137 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCHH---------HHHHHHH
Confidence 12233567899999999985432222 345555555442 3599999999998753111111 1334445
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+.+++. +|+.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHH
Confidence 55666665 78888899999999998765
No 75
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.82 E-value=3e-20 Score=146.70 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|++++.... . . .+|.......+.+ .+..+.+|||||... +...+..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-C-C---CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-c-c---cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 48999999999999999999876542 1 1 1233333445555 778999999999653 2333444
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. ...+...+
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~---~~~~~~~~ 135 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-LG---LHSLRHRN 135 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCSSCC
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-hC---cccccCcc
Confidence 5788999999999985432222 12233333221 123599999999998654 222222111 00 00000111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++ .+||.++.|+++++++|.+.+.
T Consensus 136 ~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQ------ATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEE------ECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEE------EcccCCCcCHHHHHHHHHHHHh
Confidence 1233 3788889999999999987653
No 76
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=148.25 Aligned_cols=169 Identities=17% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +++.......+.+ ++. .+.||||||..+ +.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYT--PTVFERYMVNLQV-KGKPVHLHIWDTAGQDD-----------YD 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC--------C--CCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCC--CccceeEEEEEEE-CCEEEEEEEEECCCchh-----------hh
Confidence 35699999999999999999999987642 2111 1122222223334 443 789999999554 22
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCc
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPK 168 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~ 168 (311)
.....++..+|++|+|+|++++.+.... .++..+..... ..|+++|+||+|+... ....+.+.. ....
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 171 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYH 171 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc--chhhhhhcccccCcccHH
Confidence 3334457789999999999854333332 35555655442 3599999999998765 333222210 0111
Q ss_pred hHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 169 PLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 169 ~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
....+....+. .++. +||.++.|++++++.|.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 172 RGQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 23455555565 5555 78889999999999998877553
No 77
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.4e-19 Score=147.09 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=107.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|++++... .... .+++.......+.+ ++ ..+.||||||..+..
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~--------- 80 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEY--VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD--------- 80 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSC--CCSSCCCEEEEEES-SSCEEEEEEECCCCSSSST---------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC--CCcccceeEEEEEE-CCEEEEEEEEECCCCcchh---------
Confidence 344668999999999999999999998753 2211 11111111223344 44 478999999976532
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----EC 166 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~ 166 (311)
.....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|+... ....+.+.. ..
T Consensus 81 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 153 (194)
T 2atx_A 81 --RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD--PKTLARLNDMKEKPIC 153 (194)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred --HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--ccchhhcccccCcccC
Confidence 223455788999999999985533222 245666666543 3599999999998764 222111110 00
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
......+....+. .++. +||.++.|+++++++|.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 154 VEQGQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 1123444444454 5555 78889999999999988755
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.8e-20 Score=149.44 Aligned_cols=163 Identities=19% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...........+.+. ...+.. ++ ..+.||||||..+. .
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQF-----------P 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSC-----------H
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHh-----------H
Confidence 3569999999999999999999998664211111111111 112222 33 37899999996542 1
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+... ....+. ...+.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~~~ 140 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR--EVDTRE--------AQAVA 140 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC--SSCHHH--------HHHHH
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc--ccCHHH--------HHHHH
Confidence 122223456799999999984433222 3455566665543234599999999998753 111111 23334
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 QEWKCAFME------TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHTCEEEE------CBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHhCCeEEE------EecCCCCCHHHHHHHHHHHHhh
Confidence 445656655 7888899999999999887654
No 79
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.82 E-value=1e-19 Score=144.18 Aligned_cols=161 Identities=15% Similarity=0.239 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|+|||||+|+|+|..... ...++.|.......+.+ ++..+.+|||||..+..... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI--GNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC--C-----CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec--cCCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 4799999999999999999999876422 22344555555555566 67899999999987653221 1122222211
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
. ..++|++++|+|+++ .. ....++..+.+ . ..|+++|+||+|+... ..+. .....+...++.
T Consensus 78 ~-~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~-~----~~p~ilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-LE-RNLYLTLQLME-M----GANLLLALNKMDLAKS--LGIE--------IDVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETTC-HH-HHHHHHHHHHH-T----TCCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-hh-HhHHHHHHHHh-c----CCCEEEEEEchHhccc--cChh--------hHHHHHHHHhCC
Confidence 1 136899999999983 22 22234444443 1 3599999999997532 1111 013344444566
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+++. +||.++.|++++++.|.+.+
T Consensus 140 ~~~~------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVP------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHh
Confidence 6665 78999999999999987654
No 80
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.82 E-value=1.5e-19 Score=144.85 Aligned_cols=165 Identities=19% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
|....++|+|+|.+|+|||||+|+|++.... . . ..+++.......+.+ ++ ..+.||||||........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~-~-~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV-S-D-YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC-S-S-CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc-c-c-cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH------
Confidence 3456799999999999999999999987542 1 1 122222222233444 44 378899999976543211
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ..+... ....
T Consensus 75 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~--~~v~~~-------~~~~ 139 (181)
T 2fn4_A 75 -----EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ--RQVPRS-------EASA 139 (181)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG--CCSCHH-------HHHH
T ss_pred -----HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHH-------HHHH
Confidence 112345699999999984433222 2334344332221 23599999999998754 221110 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +|+.++.|+++++++|.+.+..
T Consensus 140 ~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 140 FGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 44445666665 7888899999999999887754
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=1.4e-19 Score=145.27 Aligned_cols=166 Identities=15% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++..... ...+..+.......+.+. ....+.||||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 456999999999999999999999876422 122222333333444441 134789999999543 33
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+.........+ ....
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~--------~~~~ 144 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK--------SAQE 144 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH--------HHHH
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH--------HHHH
Confidence 445567889999999999985433222 3445555554431 1235999999999985431011111 1233
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +|+.++.|+++++++|.+.+.
T Consensus 145 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 145 LAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 333 23445555 788889999999999987653
No 82
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.82 E-value=6.5e-20 Score=151.60 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||++++++... ..... +..........+.. ++. .+.||||+|.... ..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~-~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQ-ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-C-----------CEEEEEEC-SSCEEEEEEECCSCTTTC-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC-CCCcC-CccceEEEEEEEEe-cceEEEEEEEECCCchhh-----------hh
Confidence 458999999999999999999987654 22211 11122222223333 333 7889999996542 22
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
....+++++|++++|+|++++-+-.. ..++..+....+++ .|++||.||+|+... ..+.. .....+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~--r~V~~-------~e~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK--RQVSI-------EEGERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc--CcccH-------HHHhhHHH
Confidence 33445788999999999985444333 45666777666654 499999999997654 22111 11344556
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||+++.|+++++..|.+.+.
T Consensus 147 ~~~~~~~e------~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 ELNVMFIE------TSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHTCEEEE------EBTTTTBSHHHHHHHHHHHC-
T ss_pred HhCCeeEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 66766655 799999999999999876653
No 83
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=8.6e-20 Score=156.04 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=107.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|||||||+|+|+|...+ ...++|+|.......+.. +..+.+|||||..+..... ..+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHH
Confidence 479999999999999999999998753 234567777665554432 6789999999998754322 1222322221
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
. ...+|++++|+|+++ +.. ...+...+.+ ...|+++|+||+|+... ..+. .....+....+.
T Consensus 77 ~-~~~~d~vi~V~D~t~-~e~-~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~--~~~~--------~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-LER-NLYLTTQLIE-----TGIPVTIALNMIDVLDG--QGKK--------INVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-HHH-HHHHHHHHHH-----TCSCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-hHh-HHHHHHHHHh-----cCCCEEEEEEChhhCCc--CCcH--------HHHHHHHHHcCC
Confidence 1 246899999999983 322 2233333433 23599999999997633 1111 123445555566
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+++. +||.++.|++++++.|.+.+.
T Consensus 139 ~vi~------~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVVA------TSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEE------EEccCCCCHHHHHHHHHHHHh
Confidence 6666 788999999999999987654
No 84
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=5.4e-19 Score=143.10 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=102.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.-..++|+|+|.+|+|||||+|+|++..... . ..+++.......+.+ ++. .+.||||||..+ +
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~ 82 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVD--E-YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------Y 82 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCS--C-CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---------------
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCcc--c-cCCccceEEEEEEEE-CCEEEEEEEEECCChHH-----------H
Confidence 3456899999999999999999999876421 1 122222222233444 443 589999999553 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
......++..+|++++|+|++++.+..+ ..++..+...... ...|+++|+||+|+... ....+ .+..+
T Consensus 83 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~--~~~~~--------~~~~~ 151 (190)
T 3con_A 83 SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTR--TVDTK--------QAHEL 151 (190)
T ss_dssp -------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHH--------HHHHH
T ss_pred HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCcc--cCCHH--------HHHHH
Confidence 2334455788999999999985433232 3445555554431 23599999999998753 11111 13344
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
....+..++. +|+.++.|+.+++++|.+.+...
T Consensus 152 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 152 AKSYGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 4555666665 78888899999999998877553
No 85
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.82 E-value=9.5e-20 Score=149.56 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=80.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC--ccccccCCCCCcceeEEEEEEEeeC----CceEEEEeCCCCCCCCCChHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK--KAFMSKAGSSGVTKTCEMQRTMLKA----GQVVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~--~~~~~~~~~~~~T~~~~~~~~~~~~----~~~l~liDTPG~~~~~~~~~~~~ 91 (311)
...++|+|+|.+|+|||||+|+|++. .. .....+..........+.+ + ...+.||||||..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~---------- 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKF--LKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSD---------- 84 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcc--cCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcH----------
Confidence 45689999999999999999999987 32 1111111112233444555 4 3479999999953
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCC-CChhcHHHHhhhcCCc
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELE-DNDETLEDYLGRECPK 168 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~-~~~~~~~~~~~~~~~~ 168 (311)
.+...+..++..+|++|+|+|++++.+... ..++..+....+. ....|+++|+||+|+.. . ..+. ..
T Consensus 85 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--~~v~-------~~ 154 (208)
T 2yc2_C 85 -LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQR--HQVR-------LD 154 (208)
T ss_dssp -HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---------CCC-------HH
T ss_pred -HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhh--ccCC-------HH
Confidence 345556677889999999999985543222 4555666655431 02359999999999875 3 1111 01
Q ss_pred hHHHHHHhcCCcEEEecCCchhhhhh-HHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAAKR-TEQVGKLLSLVNSVIV 210 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa~~-~~~i~~l~~~i~~~~~ 210 (311)
....+....+..++. +|+.+ +.|+.+++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence 134455556666665 78888 8999999999987653
No 86
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=1.5e-19 Score=142.94 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=98.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++.... ... .+. +.......+.+ + ...+.+|||||...... +
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~-~~t-~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~--------~--- 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKY-DPT-IEDSYRKQVEV-DCQQCMLEILDTAGTEQFTA--------M--- 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSC-CCC-SEEEEEEEEES-SSCEEEEEEEEECSSCSSTT--------H---
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCC-CCC-ccceEEEEEEE-CCEEEEEEEEECCChHHHHH--------H---
Confidence 489999999999999999999986542 111 111 11111222333 3 33789999999765321 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........+ ....+...
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQ 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH---------HHHHHHHH
Confidence 1122445799999999985433222 3445555554322 23599999999998654111111 12334444
Q ss_pred c-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 177 C-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 177 ~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
. +..++. +||.++.|+++++++|.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 4 445555 78889999999999998765
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.5e-20 Score=147.61 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++...... .. |.......+.+ ++..+.||||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SP----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-EC----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cC----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 4569999999999999999999997764311 11 22222344555 77899999999975421 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH-HHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE-ILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~-~~~ 175 (311)
+..++..+|++|+|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... +.. .+.
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~~~~~ 148 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKLTSIK 148 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCC
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hChhhhc
Confidence 2334678999999999985533222 223333322110 123699999999998754 222221111 000 001
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++++|.+.+..
T Consensus 149 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 149 DHQWHIQA------CCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SSCEEEEE------CBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCcEEEE------ccCCCCcCHHHHHHHHHHHHHH
Confidence 11223333 7888999999999999987743
No 88
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=2e-19 Score=148.90 Aligned_cols=163 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC-----------CceEEEEeCCCCCCCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA-----------GQVVNVIDTPGLFDSSAD 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~-----------~~~l~liDTPG~~~~~~~ 86 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+.. ...+.||||||.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------ 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ------ 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE--EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC--CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc------
Confidence 4568999999999999999999998764111 111112222222333312 357999999993
Q ss_pred hHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC--ccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 87 PEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
..+...+..++..+|++|||+|++++.+... ...++..+.... ...|+++|+||+|+... ..+..
T Consensus 95 -----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~---- 161 (217)
T 2f7s_A 95 -----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNE---- 161 (217)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCH----
T ss_pred -----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCH----
Confidence 3344455566788999999999984433222 223333332211 24699999999998653 11110
Q ss_pred cCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 165 ECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.....+....+..++. +||.++.|+++++++|.+.+.
T Consensus 162 ---~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 162 ---RQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp ---HHHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 1134455555666665 788888999999999887653
No 89
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.81 E-value=3.5e-19 Score=141.30 Aligned_cols=163 Identities=18% Similarity=0.108 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... .....+.......+.+ ++ ..+.+|||||..+... .+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~--- 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WL--- 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hh---
Confidence 47999999999999999999997654211 2222334444444444 44 3778999999765311 01
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 138 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE---------EGRHLAGT 138 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH---------HHHHHHHH
Confidence 1112345799999999985432222 3444444443321 23599999999998643111111 13445555
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|++++++.+.+.+..
T Consensus 139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 139 LSCKHIE------TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence 5666665 7888999999999999877643
No 90
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=2.2e-19 Score=148.35 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=75.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC--CceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA--GQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++... .... .+.+ .....+.+.. +..+.||||||..+ +.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQ--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC-CCBC--CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-cccc--CCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence 3458999999999999999999998763 2211 1222 2233355521 56899999999542 22
Q ss_pred H-HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH----hCCCccCeEEEEEeccCCCCC
Q 021534 96 K-CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL----FGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 96 ~-~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~----~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. .+..++.++|++|||+|+++ +..........+... .......|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2 33445778999999999983 332222333333322 112234599999999998765
No 91
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=145.86 Aligned_cols=173 Identities=18% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCCh
Q 021534 10 DSKPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADP 87 (311)
Q Consensus 10 ~~~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~ 87 (311)
....+.+....++|+|+|.+|+|||||+|++++........ ++.+.......+.+ ++. .+.+|||||.....
T Consensus 13 ~~~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--- 86 (195)
T 3cbq_A 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG--- 86 (195)
T ss_dssp ---------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---
T ss_pred cccCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch---
Confidence 33445566778999999999999999999998754311111 22233333334444 444 67889999975421
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcC
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC 166 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 166 (311)
..+. ..++..+|++|+|+|++++-+... ..++..+...... ...|+++|+||+|+........++
T Consensus 87 ----~~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~------ 152 (195)
T 3cbq_A 87 ----GWLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE------ 152 (195)
T ss_dssp ----HHHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH------
T ss_pred ----hhhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH------
Confidence 1121 223456799999999985433222 3444455543321 235999999999987541111111
Q ss_pred CchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+..++. +||.++.|++++++.|.+.+..
T Consensus 153 ---~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 153 ---GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp ---HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHH
Confidence 23344445555555 7888899999999999887754
No 92
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=9.5e-19 Score=160.46 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+|+|.||+|||||+|+|++..... ....+++|.......+.+ ++..+.||||||+.++.. .+.........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAI-VSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 4789999999999999999999986422 223457787777777777 889999999999876421 11111122334
Q ss_pred hccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.++..+|++|||+|++++.+.... ....++.. +. ..|+++|+||+|+... ..... .. +. ....
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~--~~~~~--~~-----l~---~~~~ 371 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAAN--ADALI--RA-----IA---DGTG 371 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTT--THHHH--HH-----HH---HHHT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCc--cchhH--HH-----HH---hcCC
Confidence 567899999999999977665322 22223333 22 2599999999998765 32221 10 11 1111
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..++. +||.++.|+++|+++|.+.+.
T Consensus 372 ~~~i~------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 372 TEVIG------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCEEE------CBTTTTBSHHHHHHHHTHHHH
T ss_pred CceEE------EEECCCCCHHHHHHHHHHHHh
Confidence 33444 789999999999999999886
No 93
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.81 E-value=2.3e-19 Score=144.34 Aligned_cols=166 Identities=23% Similarity=0.193 Sum_probs=103.3
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVS 91 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~ 91 (311)
+.+....++|+|+|.+|+|||||+|+|++.... ... .+..+... ...+.. ++. .+.+|||||.......
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDY-DPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCC-CTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence 344556799999999999999999999976532 211 12222222 333334 554 4667999996543221
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL 170 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~ 170 (311)
...++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ..
T Consensus 83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~---------~~ 146 (183)
T 3kkq_A 83 ------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD---------QG 146 (183)
T ss_dssp ------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH---------HH
T ss_pred ------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH---------HH
Confidence 1122445799999999985433222 3444445443322 23589999999998754111111 13
Q ss_pred HHHHHhcCCcEEEecCCchhhhh-hHHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDNRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 171 ~~~~~~~~~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~~ 210 (311)
..+...++..++. +|+. ++.|++++++.|.+.+.
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 147 KEMATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence 4455555666666 6777 78999999999988764
No 94
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.3e-19 Score=150.91 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+ ++ ..+.||||||.....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR----------- 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------
Confidence 4568999999999999999999998764222 2223333344444455 55 488999999976532
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..+..++..+|++|+|+|++++.+..+ ..++..+...... ..|+++|+||+|+... ..+.. .....+.
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~--~~v~~-------~~~~~~~ 145 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAHL--RAVPT-------EESKTFA 145 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG--CCSCH-------HHHHHHH
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 223455788999999999985443333 3445555554322 3599999999998643 11110 0123444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +||.++.|+++++++|.+.+..
T Consensus 146 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQLLFTE------TSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTTCEEEE------CCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 555655555 6888889999999999887744
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=2.3e-19 Score=146.90 Aligned_cols=167 Identities=17% Similarity=0.108 Sum_probs=106.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++...... ..+..+.... ..+.+ ++ ..+.||||||..+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~----------- 86 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDY----------- 86 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGG-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhH-----------
Confidence 34568999999999999999999998764211 1122222221 22333 44 37899999996542
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~ 167 (311)
......++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+... ....+.+... ..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 161 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD--EHTRRELAKMKQEPVRS 161 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC--ccchhhhcccccCcCCH
Confidence 2233446788999999999984433222 345666665432 3599999999998765 2222222110 01
Q ss_pred chHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 168 ~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.....+....+. .++. +||.++.|++++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 162 EEGRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 123444555555 4554 78888999999999988754
No 96
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=2.8e-19 Score=146.73 Aligned_cols=163 Identities=12% Similarity=0.045 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... ....+..+.......+.+ ++ ..+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 35699999999999999999999987642 222233344444444444 33 478999999965422
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
..+..++..+|++|+|+|++++.+... ..++..+...... ....|+++|+||+|+... ....+. ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 223345678999999999985433222 3444555544421 123599999999998743 211111 222
Q ss_pred HHH-hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQ-LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~-~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+.. ..+..++. +||.++.|+++++++|.+.+.
T Consensus 142 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 142 WCYSKNNIPYFE------TSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp HHHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 333 33445555 788899999999999987664
No 97
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=8.9e-20 Score=148.17 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=103.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
..++|+|+|.+|+|||||+|+|++...... ..+..+.......+.+. ....+.||||||...... .
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------L 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------S
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-----------h
Confidence 458999999999999999999998764222 12222233333333331 234789999999654321 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+ ....+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~--~~~~~--------~~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR--EVDRN--------EGLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC--CSCHH--------HHHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc--ccCHH--------HHHHHHHH
Confidence 2234677899999999985433222 233334433221 123699999999998533 11111 12344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +|+.++.|+++++++|.+.+..
T Consensus 150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence 5666555 7888899999999999987754
No 98
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.81 E-value=2.7e-19 Score=144.48 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=103.3
Q ss_pred CCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHH
Q 021534 12 KPTSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 12 ~~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~ 89 (311)
....+....++|+|+|.+|+|||||+|++++.... ....+ |.......+.+ ++. .+.||||||....
T Consensus 12 ~~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~------ 80 (184)
T 3ihw_A 12 ENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPEL------ 80 (184)
T ss_dssp ----CCCCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCH------
T ss_pred CCCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC---CcceEEEEEEE-CCEEEEEEEEECCCChhh------
Confidence 34456667899999999999999999999987642 21111 22222234445 554 6778999997641
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCc
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~ 168 (311)
. ++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+.......+.. .
T Consensus 81 --~--------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~-------~ 142 (184)
T 3ihw_A 81 --Q--------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDD-------S 142 (184)
T ss_dssp --H--------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCH-------H
T ss_pred --h--------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCH-------H
Confidence 1 2345799999999985544333 344444443321 1335999999999985321111110 1
Q ss_pred hHHHHHHhcC-CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCD-NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 169 ~~~~~~~~~~-~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+....+ ..++. +||.++.|++++++++.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 143 RARKLSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 1344555554 45554 7888999999999999876643
No 99
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=3.9e-19 Score=147.00 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=106.8
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-CCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
.+....++|+|+|.+|+|||||+|+|++.... . ...+...... ...+.+. ....+.||||||...
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~-~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~----------- 87 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYP-E-TYVPTVFENY-TACLETEEQRVELSLWDTSGSPY----------- 87 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC-S-SCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGG-----------
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCC-C-CcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHh-----------
Confidence 44556799999999999999999999987642 1 1111111111 2222331 234789999999653
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh-h----hcC
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-G----REC 166 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~-~----~~~ 166 (311)
+......++..+|++|+|+|++++-+... ..++..+..... ..|+++|+||+|+..+ ......+ . ...
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRTD--LSTLMELSHQKQAPIS 162 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGGC--HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc--hhhhhhhcccccCccC
Confidence 22334556889999999999985544333 356666666542 3599999999998753 1100000 0 001
Q ss_pred CchHHHHHHhcCC-cEEEecCCchhhhhhHHH-HHHHHHHHHHHHHH
Q 021534 167 PKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQ-VGKLLSLVNSVIVQ 211 (311)
Q Consensus 167 ~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~-i~~l~~~i~~~~~~ 211 (311)
......+....+. .++. +||.++.| ++++++.|.+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 163 YEQGCAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhc
Confidence 1123455555666 5655 78889998 99999999887643
No 100
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=3.1e-19 Score=145.13 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=104.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCCcceeEEEEEE---Eee-CCceEEEEeCCCCCCCCCCh
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAG------SSGVTKTCEMQRT---MLK-AGQVVNVIDTPGLFDSSADP 87 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~------~~~~T~~~~~~~~---~~~-~~~~l~liDTPG~~~~~~~~ 87 (311)
...++|+|+|.+|+|||||+|.+.|......... ....|........ ... ....+.||||||....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 4569999999999999999999987643111110 0122333333321 110 2237899999997653
Q ss_pred HHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHH----HHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 88 EFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIH----ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~----~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...+..++..+|++|+|+|++++....+...+. ++..........|+++|+||+|+... ...++
T Consensus 88 -------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~--- 155 (198)
T 3t1o_A 88 -------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM--- 155 (198)
T ss_dssp -------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH---
T ss_pred -------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH---
Confidence 122334578899999999998444333333333 33332112234699999999998654 22221
Q ss_pred hcCCchHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..++...+. .++. +||.++.|+++++++|.+.+..
T Consensus 156 ------~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 156 ------VRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp ------HHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence 3444455555 5555 7889999999999999876643
No 101
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=2e-19 Score=156.32 Aligned_cols=173 Identities=16% Similarity=0.227 Sum_probs=116.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCChHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF-DSSADPEFVSKEIVKCI 98 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~-~~~~~~~~~~~~~~~~~ 98 (311)
..+|+++|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+. .. ...+...+...+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~-s~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISIT-SRKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC-CCCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc-CCCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 46899999999999999999999875322 22344555444444555 77899999999976 21 112222333344
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++++|+|+++ ++..+..+++.+.. ...|+++++||+|..... ..+.+. +..+....+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhcC
Confidence 567788999999999986 88887766665542 235999999999987520 222222 223333334
Q ss_pred C-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCCCCCcH
Q 021534 179 N-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGGQPYTD 219 (311)
Q Consensus 179 ~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~~~~~~ 219 (311)
. .+++ +|+.++.++.+|++.|...+++ +...|+.
T Consensus 148 ~~~~i~------iSA~~g~~v~~l~~~i~~~l~~-~~~~~~~ 182 (301)
T 1ega_A 148 FLDIVP------ISAETGLNVDTIAAIVRKHLPE-ATHHFPE 182 (301)
T ss_dssp CSEEEE------CCTTTTTTHHHHHHHHHTTCCB-CCCSSCT
T ss_pred cCceEE------EECCCCCCHHHHHHHHHHhCCc-CCCCCCc
Confidence 3 3444 7888899999999999887754 4444544
No 102
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=2e-19 Score=144.88 Aligned_cols=167 Identities=14% Similarity=0.027 Sum_probs=106.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|++++.... ... .+++.......+.+ .+. .+.||||||.... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEY--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSC--CCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCc--CCcccceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HH
Confidence 3589999999999999999999976542 111 11111222223333 444 5679999997542 22
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~~ 169 (311)
....++..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.+.. .....
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence 334567889999999999855433332 45666666543 3699999999998755 222221111 01112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+....+. .++. +||.++.|++++++.|.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 144 GLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence 3344555554 5555 7888999999999999887743
No 103
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=2.8e-20 Score=154.19 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=104.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++...........+.+ .....+....+ ..+.||||||.......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 77 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------- 77 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence 456999999999999999999999876422211122222 22222222122 46999999997653221
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...++..+|++|+|+|++++.+..+ ..++..+....+.+ .|+++|+||+|+... ..+... ....+.
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~ 144 (218)
T 4djt_A 78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISKK-------LVMEVL 144 (218)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCHH-------HHHHHT
T ss_pred --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHH
Confidence 1223567899999999985544333 45556666655432 599999999998654 111110 122333
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+..++. +||.++.|++++++.|.+.+...
T Consensus 145 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 145 KGKNYEYFE------ISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp TTCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCC
T ss_pred HHcCCcEEE------EecCCCCCHHHHHHHHHHHHhcc
Confidence 444555555 78889999999999999888653
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=3.3e-20 Score=150.25 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=102.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|++++.... ... .|.......+.+ .+..+.+|||||..+... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTV----PTVGVNLETLQY-KNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EEC----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcC----CCCceEEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 45699999999999999999999877642 211 122233444555 778999999999765432 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++|+|+|++++-+-.. ....+...... ....|+++|+||+|+... ....+.... .. ...+.
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~---~~~~~ 154 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-LG---VSSIM 154 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGCC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-hC---hhhcc
Confidence 3345778999999999985533222 11223332221 123599999999998755 222222111 00 00001
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +||.++.|+++++++|.+.+.+
T Consensus 155 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 155 NRTWTIVK------SSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp SSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEE------ccCCCccCHHHHHHHHHHHHHh
Confidence 11222333 7888899999999999987765
No 105
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=2.7e-20 Score=171.05 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|.+|||||||+|+|+|.... .....+++|.......+.+ .+..+.||||||+.+. .+.+.+.+...+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence 4589999999999999999999997643 2334568888888888877 7889999999998742 233456666667
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
..++..+|++|||+|+..+++..+.++...+++ ..+|+++|+||+|..... ....++.. ..++
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~~~-----------lg~~ 159 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFYS-----------LGFG 159 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCSGG-----------GSSS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHHHH-----------cCCC
Confidence 777788999999999988899888887777764 236999999999976431 11111111 0112
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+++ +||.++.|+.+|++.+...++
T Consensus 160 -~~~~------iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 -EPYP------ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -SEEE------CCTTTCTTHHHHHHHHHTTGG
T ss_pred -ceEE------eecccccchHHHHHHHHhhcc
Confidence 2233 688888999999999887664
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.80 E-value=2.1e-19 Score=147.50 Aligned_cols=166 Identities=15% Similarity=0.033 Sum_probs=104.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++.... .. ..+++.......+.+ ++. .+.||||||... +
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~ 91 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFP--GE-YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLED-----------Y 91 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCC--C--CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGG-----------G
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCC--CC-cCCeecceeEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence 346799999999999999999999976542 11 122233333333444 444 455999999754 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc-----CC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~ 167 (311)
......++..+|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+... ....+..... ..
T Consensus 92 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 4gzl_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhccc--hhhhhhhhccccccccH
Confidence 23344567899999999999855444332 45666665542 3699999999998765 3322221110 11
Q ss_pred chHHHHHHhcCCc-EEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNR-CVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 168 ~~~~~~~~~~~~~-~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....+....+.. ++. +||.++.|++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 167 PQGLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcEEEE------eeCCCCCCHHHHHHHHHHH
Confidence 1233445555543 554 7888999999999998763
No 107
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=5.1e-19 Score=139.47 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=101.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+++|.+|+|||||+|++++...... . .+++.......+.. .+. .+.+|||||..+.. . +
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-------~-~--- 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-C--DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-------A-M--- 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-------H-H---
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc-c--CCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-------H-H---
Confidence 37999999999999999999998764211 1 11222222223333 443 57899999976532 1 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+... ....+ ....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~--------~~~~~~~~ 136 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESR--------QAQDLARS 136 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHH--------HHHHHHHH
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHH--------HHHHHHHH
Confidence 1122445799999999984433222 4455555554432 23599999999998753 21111 13344455
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+++. +|+.++.|+.+++++|.+.+.
T Consensus 137 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 137 YGIPYIE------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HTCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 5666665 688888999999999987664
No 108
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=5.3e-20 Score=168.12 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+++|.+|+|||||+|+|+|.... .....+++|.+..+..+.+ .+..+.||||||+.... ..+...+...+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 68999999999999999999987642 2234568888888888888 78899999999986421 1245566666666
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN- 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 179 (311)
++..+|++|||+|+.++++..+..+...++. ..+|+++|+||+|+.... ....+ +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~~~---------~~----~lg~~ 139 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYD---------FY----SLGFG 139 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CCCS---------SG----GGSSC
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhHHH---------HH----HcCCC
Confidence 7788999999999988888887766665543 236999999999976431 11111 11 1121
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+++ +||.++.|+.+|++.+.+.+++
T Consensus 140 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYP------ISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEE------CBTTTTBTHHHHHHHHHHTGGG
T ss_pred CeEE------EeCcCCCChHHHHHHHHHhcCc
Confidence 3333 7899999999999999887764
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=6.5e-19 Score=142.35 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+|+|++|+|||||+|+|++...... ..++.|.......+.+ ++..+.+|||||..+..... ..+.+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence 458999999999999999999999764322 2345666666666777 78899999999987753221 111222211
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
.. ...+|++++|+|.+ .+. ....++..+.. ...|+++|+||+|+... ..+. .....+...++
T Consensus 81 ~~-~~~~~~~i~v~d~~-~~~-~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~~~--------~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 II-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME-----MGANLLLALNKMDLAKS--LGIE--------IDVDKLEKILG 142 (188)
T ss_dssp HH-HHCCSEEEEEEEGG-GHH-HHHHHHHHHHT-----TTCCEEEEEECHHHHHH--TTCC--------CCHHHHHHHHT
T ss_pred Hh-ccCCCEEEEEecch-hHH-HHHHHHHHHHh-----cCCCEEEEEEhhhcccc--ccch--------HHHHHHHHHhC
Confidence 11 13579999999987 322 22233333332 23589999999997533 1111 12445555556
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++. +|+.++.|+.++++.|...+..
T Consensus 143 ~~~~~------~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 VKVVP------LSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHHHHTT
T ss_pred CCeEE------EEecCCCCHHHHHHHHHHHHHh
Confidence 66666 7888999999999999988865
No 110
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.3e-19 Score=145.74 Aligned_cols=163 Identities=16% Similarity=0.123 Sum_probs=99.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|++++.... ......+ .....+.+ ++..+.+|||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 45699999999999999999999977641 2111122 22344555 678999999999765321 2
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. .. .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~ 150 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-LN--LV-ELK 150 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-TT--TT-TCC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHH-hC--cc-ccc
Confidence 3455788999999999985533222 22333333322 234699999999998754 222221111 00 00 000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..+..++. +|+.++.|+++++++|.+.+.+
T Consensus 151 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 151 DRSWSIVA------SSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp SSCEEEEE------EBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEE------ccCCCCcCHHHHHHHHHHHHHh
Confidence 01112333 7889999999999999887643
No 111
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=9.9e-19 Score=153.09 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=103.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEE---------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCE--------------------------------- 60 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~--------------------------------- 60 (311)
...++|+|+|.+|+|||||+|+|+|...++.+... ++.+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 45689999999999999999999998864433211 10000000
Q ss_pred --------------------EEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEEC-CCC
Q 021534 61 --------------------MQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSI-RNR 117 (311)
Q Consensus 61 --------------------~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~-~~~ 117 (311)
...+....+..+.||||||+.+... ....+...+...+..++..+|++++|+|+ +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0001221346899999999975221 11123344555566667788999999997 444
Q ss_pred CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhh--
Q 021534 118 FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKR-- 194 (311)
Q Consensus 118 ~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~-- 194 (311)
+...+ ..++..+.. ...|+++|+||+|+.... ....+.+.. .+..++..++++.+ .|+..
T Consensus 182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~ 244 (315)
T 1jwy_B 182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVIN---RSQEDII 244 (315)
T ss_dssp STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCC---CCHHHHS
T ss_pred hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEec---CChhhhc
Confidence 55444 244444432 235999999999988652 112222221 00111234444333 34444
Q ss_pred -HHHHHHHHHHHHHHHHH
Q 021534 195 -TEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 195 -~~~i~~l~~~i~~~~~~ 211 (311)
+.|+.++++.+..+++.
T Consensus 245 ~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 245 AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHhC
Confidence 67899999999998865
No 112
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=9.3e-20 Score=148.18 Aligned_cols=162 Identities=10% Similarity=0.067 Sum_probs=97.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|.+|+|||||+|++++.... . . .+|.......+.+ .+..+.||||||......
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~-~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-T-T---IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP----------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-E-E---EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-c-c---CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------
Confidence 356799999999999999999999877642 1 1 2233444455666 778999999999765321
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++-+-.. ...++...... ....|+++|+||+|+... ....+.... .. ....
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~---~~~~ 160 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-LG---LQHL 160 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-TT---GGGC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-hC---cccc
Confidence 12233567899999999985433222 11233332221 123599999999998654 222222111 00 0000
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..++ .+||.++.|+++++++|.+.+
T Consensus 161 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 161 RSRTWYVQ------ATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp SSCCEEEE------ECBTTTTBTHHHHHHHHHHHT
T ss_pred cCCceEEE------ECcCCCcCCHHHHHHHHHHHH
Confidence 01111233 378889999999999998765
No 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.80 E-value=1.5e-19 Score=145.57 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+++|.+|+|||||+|++++...... ..|.......+.+ ++..+.+|||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4569999999999999999999998753111 1222233445556 688999999999643 2233
Q ss_pred HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCC--CccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..+|++++|+|++++-+... ...++...... ....|+++|+||+|+... ...++.... .. +. .+.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~~-~~~ 148 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-LN--LH-TIR 148 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCC
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-hC--ch-hcc
Confidence 4455778999999999985433222 11223332221 123599999999998755 222222111 00 00 000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++ .+||.++.|+++++++|.+.+
T Consensus 149 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 149 DRVWQIQ------SCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp SSCEEEE------ECCTTTCTTHHHHHHHHHHTC
T ss_pred CCceEEE------EccCCCCCCHHHHHHHHHHHH
Confidence 1112233 378889999999999997754
No 114
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.5e-19 Score=146.43 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|.+|+|||||+|+|++...... ..+..+... ...+.+ ++ ..+.||||||..+.. .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENY-VADIEV-DGKQVELALWDTAGQEDYD-----------R 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCT-----------T
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceE-EEEEEE-CCEEEEEEEEECCCcHHHH-----------H
Confidence 468999999999999999999998764211 111111111 122344 44 378999999976532 2
Q ss_pred HHHhccCCccEEEEEEECCCCCC--hhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhc----C-Cch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFS--KEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----C-PKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~-~~~ 169 (311)
....++..+|++|+|+|++++-+ .....++..+..... ..|+++|+||+|+... ....+.+... . ...
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 23345788999999999984432 222355666666442 3599999999998755 3322222110 0 112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+....+. .++. +||.++.|+++++++|.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 164 GRAMAVRIQAYDYLE------CSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 2334444454 4444 788899999999999988764
No 115
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.80 E-value=3.5e-20 Score=153.98 Aligned_cols=164 Identities=15% Similarity=0.038 Sum_probs=106.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+....++|+|+|.+|+|||||+|+++............+.|.......+.. .+..+.||||||......
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---------- 79 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGG---------- 79 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSC----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhH----------
Confidence 345669999999999999999999554332112223334444444433322 345789999999654321
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
....++..+|++|+|+|++++.+... ..++..+...+. ..|+++|+||+|+... ....+ ...+.
T Consensus 80 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~---------~~~~~ 144 (221)
T 3gj0_A 80 -LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR--KVKAK---------SIVFH 144 (221)
T ss_dssp -CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC--SSCGG---------GCCHH
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc--cccHH---------HHHHH
Confidence 12233568899999999985443332 345556665543 3599999999998754 22111 12233
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..++. +|+.++.|+.+++.+|.+.+..
T Consensus 145 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 145 RKKNLQYYD------ISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp HHHTCEEEE------CBGGGTBTTTHHHHHHHHHHHT
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 444566665 7889999999999999987754
No 116
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.79 E-value=5.3e-18 Score=150.94 Aligned_cols=168 Identities=16% Similarity=0.140 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCCh-HHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADP-EFVSKEIVK 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~-~~~~~~~~~ 96 (311)
...++|+++|.+|+|||||+|+|++... .....++.|.......+.. .+..+.+|||||+.+..... ..+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP--EIASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---Q 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC--EEECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---H
Confidence 4568999999999999999999999874 2223345666666666666 67889999999987643221 11111 1
Q ss_pred HHHhccCCccEEEEEEECCCCC--ChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRF--SKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
.+......+|++++|+|+++.. +..+ ..++..+...++ ..|+++|+||+|+... ..+.+ +...
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~---------~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKR---------LEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHH---------HHHH
Confidence 2222344689999999987432 3333 566666666553 3599999999998754 33322 2233
Q ss_pred HHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+.+++. +||.++.|+++|+++|.+.+..
T Consensus 305 ~~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 305 VKEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 3344555555 7888999999999999887643
No 117
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.79 E-value=5.9e-19 Score=141.33 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=98.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++..... ..+ ... ......+.+ ++ ..+.||||||...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~------------- 66 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TES-EQYKKEMLV-DGQTHLVLIREEAGAPD------------- 66 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSS-SEEEEEEEE-TTEEEEEEEEECSSSCC-------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-Ccc-eeEEEEEEE-CCEEEEEEEEECCCCch-------------
Confidence 356999999999999999999999876422 111 111 111233344 44 3688999999653
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCC-ccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
..++.++|++|+|+|++++.+... ..++.++....... ...|+++|+||+|+.......+.. .....+
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-------~~~~~~ 136 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARAL 136 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH-------HHHHHH
T ss_pred ---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH-------HHHHHH
Confidence 112445799999999985544333 23344555543321 235999999999974221011110 012333
Q ss_pred HHhc-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 174 LQLC-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 174 ~~~~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.... +..++. +||.++.|++++++.|.+.+.
T Consensus 137 ~~~~~~~~~~~------~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 137 XADMKRCSYYE------TXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHSSEEEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHhhcCCeEEE------EeccccCCHHHHHHHHHHHHH
Confidence 3333 344444 788889999999999887653
No 118
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.79 E-value=4.5e-19 Score=143.86 Aligned_cols=165 Identities=8% Similarity=0.034 Sum_probs=97.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.+.++|+++|.+|+|||||+|++++.... .. ..|.......+.+ ++..+.+|||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL---QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--CC---CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--cc---ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 45589999999999999999999987642 11 2233333455666 77899999999976422 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCC-hhcHHHHhhhcCCchHHHHH-
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEIL- 174 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~- 174 (311)
+..++..+|++++|+|++++-+-.. ..++..+.... .....|+++|+||+|+.... ...+.+....... .-...+
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~ 161 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAVSEAELRSALGLLNT-TGSQRIE 161 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSC-CC---CC
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccc-ccccccc
Confidence 3455788999999999985433222 22233232211 11235999999999987530 1112222111000 000000
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
...+.+++ .+||.++.|+++++++|.+
T Consensus 162 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 162 GQRPVEVF------MCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp SSCCEEEE------ECBTTTTBSHHHHHHHHHT
T ss_pred ccceEEEE------EeECCcCCCHHHHHHHHHh
Confidence 00112233 3788999999999998864
No 119
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=1.6e-18 Score=139.70 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=102.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... .... +...... ...+.+ ++ ..+.||||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~-~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYV-PTVFENY-TASFEI-DTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCC-CCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCC-CccceeE-EEEEEE-CCEEEEEEEEECCCChhh-----------h
Confidence 45699999999999999999999986542 1111 1111111 122333 33 47899999996542 2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCch
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 169 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~ 169 (311)
.....++..+|++|+|+|++++.+... ..++..+....+ ..|+++|+||+|+..+. ....+.... .....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 223446788999999999985433333 244555655443 35999999999987431 111111100 00112
Q ss_pred HHHHHHhcC-CcEEEecCCchhhhh-hHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD-NRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~-~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++. +||. ++.|++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 146 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence 344555545 35555 7887 6899999999988765
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.79 E-value=6.6e-21 Score=155.82 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=97.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
+..++|+|+|.+|+|||||+|+|++...... ..++.+.......+.+ ++ ..+.||||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH----------
Confidence 4568999999999999999999998764221 1223344454555555 55 4799999999665322
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.+..++..+|++|+|+|++++.+... ..++..+..... ...|+++|+||+|+... ..+. ......+.
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~ 165 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK--KVVD-------YTTAKEFA 165 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC----CCCC-------SCC-CHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc--ccCC-------HHHHHHHH
Confidence 13345678999999999985443222 334444443322 23599999999998644 2111 01123344
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+..++. +||.++.|+++++++|.+.+
T Consensus 166 ~~~~~~~~~------vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 166 DSLGIPFLE------TSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp HTTTCCBCC------CCC---HHHHHHHHHHTTTT
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 444554443 78899999999999987655
No 121
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.3e-18 Score=141.82 Aligned_cols=164 Identities=19% Similarity=0.156 Sum_probs=101.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
+....++|+|+|.+|+|||||+|+|++...... .. +..+... ...+.+ ++ ..+.||||||..+ ...
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~-~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~--- 91 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YD-PTLESTY-RHQATI-DDEVVSMEILDTAGQED-----TIQ--- 91 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CC-TTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-----CHH---
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcc-cC-CCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-----ccc---
Confidence 345679999999999999999999998764211 11 1111111 222333 43 4689999999775 111
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
. ..++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+......... ....
T Consensus 92 ~----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~---------~~~~ 157 (196)
T 2atv_A 92 R----EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTE---------EGEK 157 (196)
T ss_dssp H----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHH---------HHHH
T ss_pred h----hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHH---------HHHH
Confidence 1 122445699999999985433222 3445555554322 23599999999998653111111 1233
Q ss_pred HHHhcCCcEEEecCCchhhhhhHH-HHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTE-QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~~ 211 (311)
+....+..++. +|+.++. |+.+++++|.+.+.+
T Consensus 158 ~~~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 158 LATELACAFYE------CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence 44444656665 7888888 999999999876643
No 122
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=2.8e-19 Score=163.38 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|+||+|||||+|+|++..... ....+++|..+....+.+ ++..+.||||||+.++... +.........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~---ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAI-VTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQ---VEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSC-CSCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence 4789999999999999999999876421 223456777766666777 8899999999998764211 1111122234
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++++..+..++..+.. .|+++|+||+|+... .... .... +. .+.
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 56788999999999998887777665555432 499999999998755 2221 1110 00 123
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+++. +|+.++.|+++|++.|.+.+..
T Consensus 359 ~~i~------iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 359 QIVH------TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp CEEE------EBTTTTBSHHHHHHHHHHHHTT
T ss_pred cEEE------EECCCCCCHHHHHHHHHHHHhc
Confidence 3444 7889999999999999998854
No 123
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=140.68 Aligned_cols=164 Identities=18% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEE-EEEEEeeCC--ceEEEEeCCCCCCCCCChHHH
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCE-MQRTMLKAG--QVVNVIDTPGLFDSSADPEFV 90 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~-~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~ 90 (311)
+......++|+|+|.+|+|||||+|++++... ..... + |.... ...+.+ ++ ..+.||||||......
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----- 84 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRF-ISEYD--P-NLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN----- 84 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCC--T-TCCEEEEEEEEE-TTEEEEEEEEECCC---CCC-----
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCC-CcccC--C-CccceeeEEEEE-CCEEEEEEEEECCCCCcchh-----
Confidence 34455779999999999999999999998763 22111 1 22211 122333 33 3788999999765321
Q ss_pred HHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCC-CccCeEEEEEeccCCCCCChhcHHHHhhhcCCc
Q 021534 91 SKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~ 168 (311)
+ ..++..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+... ..+. ..
T Consensus 85 ---~----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~-------~~ 148 (187)
T 3c5c_A 85 ---C----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVT-------KA 148 (187)
T ss_dssp ---T----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSC-------HH
T ss_pred ---H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccC-------HH
Confidence 1 123567899999999984433332 3455555554310 123589999999998643 1111 01
Q ss_pred hHHHHHHhcCCcEEEecCCchhhh-hhHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAA-KRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa-~~~~~i~~l~~~i~~~~ 209 (311)
....+....+..++. +|| .++.|++++++.|.+.+
T Consensus 149 ~~~~~~~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 149 EGVALAGRFGCLFFE------VSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHHHHHTCEEEE------CCSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEE------EeecCccccHHHHHHHHHHHH
Confidence 133444555666655 788 78899999999998765
No 124
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=2.2e-18 Score=158.83 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=112.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc-----ccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM-----SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
..++|+++|++++|||||+|+|++..... ......+.|....+..+.+ ++..+.||||||+. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence 46899999999999999999999876110 1112346777777777777 78899999999953 2
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI 173 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~ 173 (311)
+...+...+..+|++|+|+|++++........+..+.. .+ .|+++|+||+|+.+. ..++....+ +..+
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 44445556788999999999987777777777766654 33 478999999998754 444433333 4555
Q ss_pred HHhc----CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 174 LQLC----DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 174 ~~~~----~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+... +.++++ +||.++.|+.+|++.|...++.
T Consensus 154 l~~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 154 LQSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhhhcccccceEEE------EECcCCCCHHHHHHHHHHhhcC
Confidence 5544 344554 7888999999999999987653
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=2.8e-18 Score=149.56 Aligned_cols=172 Identities=17% Similarity=0.104 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|.+|+|||||+|++++.... ......++|.......+.+.++..+.||||||..+. ....+....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~-~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSA-FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCT-GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-ccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHH
Confidence 3589999999999999999999887421 112245677777777776535678999999995431 111112334
Q ss_pred HhccCCccEEEEEEECCCCCChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhc
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 177 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (311)
..++.++|++|+|+|++++-+..+. .+..++..+.......|+++|+||+|+... ....+... .....+..+....
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF 151 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence 4456789999999999855444442 334444443321223699999999998763 12211000 0011245566666
Q ss_pred C---CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 178 D---NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 178 ~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
| ..++. +|+.+ .++.+++..+..
T Consensus 152 g~~~~~~~~------tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 152 GFPNLIGFP------TSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp TCCSCEEEE------CCTTS-SHHHHHHHHHHH
T ss_pred CCCCeEEEE------eeecC-ChHHHHHHHHHH
Confidence 5 34444 56666 666666666544
No 126
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=2.1e-18 Score=141.64 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|+|++.... ... .+...... ...+.+ ++ ..+.||||||.... .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-ENY-VPTVFENY-TASFEI-DTQRIELSLWDTSGSPYY-----------D 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSC-CCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGG-----------T
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC-CCc-CCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhh-----------h
Confidence 45689999999999999999999987642 111 11111111 122333 33 47899999996542 2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh----cCCch
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP 169 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~ 169 (311)
.....++..+|++|+|+|++++.+... ..++..+..... ..|+++|+||+|+.... ..+.+.... .....
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence 223446788999999999985433333 245556665443 35999999999986431 111111110 00112
Q ss_pred HHHHHHhcC-CcEEEecCCchhhhh-hHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCD-NRCVLFDNKTKDAAK-RTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~-~~~~~f~~~~~~sa~-~~~~i~~l~~~i~~~~ 209 (311)
...+....+ ..++. +||. ++.|++++++.|.+.+
T Consensus 167 ~~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence 344555545 35554 7887 6899999999988764
No 127
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=3.9e-19 Score=142.76 Aligned_cols=166 Identities=18% Similarity=0.088 Sum_probs=98.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEE-EEEEee-CCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEM-QRTMLK-AGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~-~~~~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++... .... .+ |..... ..+... ....+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~--~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY--VP-TVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------- 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC-C-------------CBCCCC-------CEEECCCC-CTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC--CC-eeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 4569999999999999999999997653 1111 11 111111 112220 22356799999976532
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHh---hhcCCchH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GRECPKPL 170 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~---~~~~~~~~ 170 (311)
.....++..+|++++|+|++++.+.... .++..+....+ ..|+++|+||+|+... ....... ........
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~ 145 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG 145 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence 2234557889999999999854433332 45666666543 3599999999998755 2210000 00000113
Q ss_pred HHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 171 KEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 171 ~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+....+. .++. +||.++.|++++++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 146 EELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 344444454 5554 78889999999999998765
No 128
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=2e-18 Score=158.43 Aligned_cols=159 Identities=21% Similarity=0.269 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC-CCCCChHHHHHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF-DSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~-~~~~~~~~~~~~~~~~~~ 99 (311)
++|+++|.||+|||||+|+|++.... .....+++|.+.....+.+ ++..+.||||||+. ++....+.+. + ....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~g--i-~~~~ 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLG--I-ERTL 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCC--H-HHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHH--H-HHHH
Confidence 79999999999999999999987632 1233467777777777777 88999999999988 5432111100 0 0111
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++.+..+..+++.+ . ..|+++|+||+|+... ...++ +..+.. .+.
T Consensus 319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~~ 379 (482)
T 1xzp_A 319 QEIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK--INEEE---------IKNKLG-TDR 379 (482)
T ss_dssp HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC--CCHHH---------HHHHHT-CST
T ss_pred HHhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc--cCHHH---------HHHHhc-CCC
Confidence 224567999999999877776665555433 1 2599999999998643 22221 222222 223
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
+++. +||.++.|+++|++.|.+.+
T Consensus 380 ~~i~------iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 380 HMVK------ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp TEEE------EEGGGTCCHHHHHHHHHHHT
T ss_pred cEEE------EECCCCCCHHHHHHHHHHHH
Confidence 4554 79999999999999998864
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.78 E-value=8.3e-19 Score=143.26 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
....+|+++|++|+|||||+|++++.... .... |.......+.+ ++..+.+|||||.... ...
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~----t~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVP----TLHPTSEELTI-AGMTFTTFDLGGHIQA-----------RRV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------C----CCCCSCEEEEE-TTEEEEEEEECC---------------CCG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCC----CCCceeEEEEE-CCEEEEEEECCCcHhh-----------HHH
Confidence 45689999999999999999999987642 1111 22222344555 7789999999996542 223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCC-ChhcHHHHhhhcCCchHHH--H
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELED-NDETLEDYLGRECPKPLKE--I 173 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~~~~--~ 173 (311)
+..++..+|++++|+|++++-+-.. ..++..+.... .....|+++|+||+|+... ....+.+++.......-.. .
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 3455778999999999985433222 22233222211 1123599999999998643 1112222211100000000 0
Q ss_pred HH---hcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 174 LQ---LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 174 ~~---~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
+. ..+..++ .+||.++.|+++++++|.+
T Consensus 165 ~~~~~~~~~~~~------~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 165 LKELNARPLEVF------MCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TTTCCSCCEEEE------ECBTTTTBSHHHHHHHHHT
T ss_pred cccccCceEEEE------EEECCCCCCHHHHHHHHHH
Confidence 00 0112233 3788999999999999865
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=1.9e-18 Score=157.91 Aligned_cols=179 Identities=16% Similarity=0.232 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH-H
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV-K 96 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~-~ 96 (311)
...++|+++|++|||||||+|+|+|..... ....+++|.......+.+ ++..+.+|||||+........+..+.+. .
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~-v~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERAL-VSPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEE-ECCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccc-cCCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHH
Confidence 346899999999999999999999986422 233456777666667777 8889999999998532111000000000 0
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
....++..+|++++|+|++.+.+..+..+...+.. . ..|+++|+||||+.+.......++... +...+..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~ 325 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-R----GRASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYF 325 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-c----CCCEEEEEECccCCCchhhHHHHHHHH-----HHHHhcc
Confidence 01122445799999999987777766655555543 2 359999999999876522223322221 2222222
Q ss_pred c-CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC
Q 021534 177 C-DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG 214 (311)
Q Consensus 177 ~-~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~ 214 (311)
. +.+++. +||.++.|+.+|++.+.+.+.....
T Consensus 326 ~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 326 IDYSPLIF------TSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp GTTSCEEE------CBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCCcEEE------EECCCCCCHHHHHHHHHHHHHhhcc
Confidence 1 334444 7899999999999999988766433
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.78 E-value=1.4e-18 Score=143.26 Aligned_cols=168 Identities=17% Similarity=0.076 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...++|+|+|.+|+|||||+|++++... ..... + ++.......+.+ ++ ..+.||||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~-~-t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYI-P-TVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-C-SSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC-CccCC-C-ccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4569999999999999999999997653 22111 1 111111223333 44 3899999999865421
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhh-hcCCchHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG-RECPKPLKE 172 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~-~~~~~~~~~ 172 (311)
.+..++..+|++|+|+|++++-+... ..++..+....+ ..|+++|+||+|+... ........ .........
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 22345788999999999985433333 245666665543 3599999999998654 22100000 000111334
Q ss_pred HHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+....+. .++. +||.++.|++++++.|.+.+..
T Consensus 147 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhh
Confidence 4455554 5555 7888999999999999887754
No 132
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.77 E-value=5.5e-18 Score=136.94 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
++|+|+|.+|+|||||+|++++... .. ...++.|....... + . .+.+|||||+.+....+....+.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~t~~~~~~~--~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RR-GKRPGVTRKIIEIE--W-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SS-SSSTTCTTSCEEEE--E-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-cc-CCCCCccceeEEEe--c-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 6899999999999999999999874 22 22345555444333 2 2 789999999876544333323333333322
Q ss_pred c----cCCccEEEEEEECCCCCChh------------HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh
Q 021534 101 A----KDGIHAVLLVFSIRNRFSKE------------EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 164 (311)
Q Consensus 101 ~----~~~~d~il~v~d~~~~~~~~------------~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 164 (311)
+ ...++++++|+|.+ .+... +...+..+.. ...|+++|+||+|+... . .+.
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~--~~~--- 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKN--V--QEV--- 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSC--H--HHH---
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCc--H--HHH---
Confidence 2 44567888888876 32211 1112222222 23599999999998765 2 111
Q ss_pred cCCchHHHHHHhcCCc-------EEEecCCchhhhhhHHHHHHHHHHHHHHHHHc
Q 021534 165 ECPKPLKEILQLCDNR-------CVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQN 212 (311)
Q Consensus 165 ~~~~~~~~~~~~~~~~-------~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~ 212 (311)
...+....+.. ++. +||.++.|+++++++|.+.+.+.
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 142 -----INFLAEKFEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp -----HHHHHHHHTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHhhhhhhccCCcEEE------EecCCCCCHHHHHHHHHHhcchh
Confidence 22333333432 343 78889999999999999877653
No 133
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=159.19 Aligned_cols=172 Identities=19% Similarity=0.251 Sum_probs=84.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CCcceeEEEEEEEee-CC--ceEEEEeCCCCCCCCCCh--
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SGVTKTCEMQRTMLK-AG--QVVNVIDTPGLFDSSADP-- 87 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~~T~~~~~~~~~~~-~~--~~l~liDTPG~~~~~~~~-- 87 (311)
..-.++|+|+|++|+|||||+|.|+|......+... ...|.......+.+. .+ ..+++|||||+++.....
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 334588999999999999999999997653222110 112222222222111 12 268999999998642111
Q ss_pred -HHHHHHHHHHHH-----------hcc--CCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 88 -EFVSKEIVKCIG-----------MAK--DGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 88 -~~~~~~~~~~~~-----------~~~--~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
..+...+...+. ..+ +.+|++||+++.+ +.+...+..++..+.. ..|+|+|+||+|++.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 112221222111 112 3466788888765 6788888766665542 258999999999886
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
. ..+..+... +...+...+.+++.| |+.++.++..++..+..
T Consensus 182 ~--~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 182 P--EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKD 223 (418)
T ss_dssp H--HHHHHHHHH-----HHHHHHHHTCCCCCC------C----------------
T ss_pred H--HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHh
Confidence 6 555554443 555555556655543 23333444444444433
No 134
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=3.9e-18 Score=148.12 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CC----------------------ccee-----------
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SG----------------------VTKT----------- 58 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~----------------------~T~~----------- 58 (311)
+....++|+|+|.+|+|||||+|+|+|....+..... ++ +|..
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999998764322110 11 1110
Q ss_pred ------------EEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEE-EEEECCCCCChhHH
Q 021534 59 ------------CEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVL-LVFSIRNRFSKEEG 123 (311)
Q Consensus 59 ------------~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il-~v~d~~~~~~~~~~ 123 (311)
.....+.......+.||||||+.+... ..+.+...+...+..++..+++++ +|+|++..++..+.
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 001111111246899999999886431 012223344455555566777665 78999866766653
Q ss_pred -HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHH
Q 021534 124 -AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLL 202 (311)
Q Consensus 124 -~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~ 202 (311)
.++..+. . ...|+++|+||+|+.... ....+.+... +..+...+++ ...+||.++.|+++++
T Consensus 182 ~~~~~~~~---~--~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~--------~~~~~~~~~~---v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 182 LKIAKEVD---P--QGQRTIGVITKLDLMDEG-TDARDVLENK--------LLPLRRGYIG---VVNRSQKDIDGKKDIT 244 (299)
T ss_dssp HHHHHHHC---T--TCSSEEEEEECGGGSCTT-CCCHHHHTTC--------SSCCTTCEEE---CCCCCCBCTTSCBCHH
T ss_pred HHHHHHhC---C--CCCeEEEEEEccccCCCC-chHHHHHhCC--------cCcCCCCcEE---EECCChhhccccccHH
Confidence 3333332 1 235999999999987552 1122222210 0001111222 2346888889999999
Q ss_pred HHHHHH
Q 021534 203 SLVNSV 208 (311)
Q Consensus 203 ~~i~~~ 208 (311)
+.|.+.
T Consensus 245 ~~l~~~ 250 (299)
T 2aka_B 245 AALAAE 250 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.8e-19 Score=153.80 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=100.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++.... .. ..|.......+.. .+..+.||||||..... ..
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~ 225 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PL 225 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE-EE----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CS
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC-Cc----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HH
Confidence 35679999999999999999999987742 21 1355566666766 78899999999954422 22
Q ss_pred HHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
...++..+|++|+|+|++++-+... ..+...+..... ...|+++|+||+|+... ....+....... ....
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilV~NK~Dl~~~--~~~~~i~~~~~~----~~~~ 297 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDEL--RDAVLLVFANKQDLPNA--MNAAEITDKLGL----HSLR 297 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC--CCHHHHHHHHTC----TTCC
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhcc--CCCeEEEEEECccCCcc--cCHHHHHHHhch----hhhh
Confidence 3334678899999999984433322 222222222111 23599999999998765 333222221000 0000
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. +||.++.|++++++.|.+.+.
T Consensus 298 ~~~~~~~~------vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQA------TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred cCCCEEEE------EECCCCcCHHHHHHHHHHHHH
Confidence 11222333 788899999999999988764
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=2e-17 Score=147.00 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.+.|+++|.+|+|||||+|+|+|.... .....++|.......+.+ ++..+.+|||||+... ... .+.+.+...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~--~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~-lp~-~lve~f~~tl~ 253 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK--VDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG-IPP-QIVDAFFVTLS 253 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS-CCG-GGHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc--ccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhc-CCH-HHHHHHHHHHH
Confidence 345999999999999999999998752 223345666666666777 7889999999998542 112 22233443333
Q ss_pred hccCCccEEEEEEECCCCC--ChhHH-HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 100 MAKDGIHAVLLVFSIRNRF--SKEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
.+..+|++++|+|++++. ..... .+...+... +. ...|+++|+||+|+... . ....+.. +..+...
T Consensus 254 -~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~ 322 (364)
T 2qtf_A 254 -EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKE 322 (364)
T ss_dssp -GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHH
T ss_pred -HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHH
Confidence 467789999999998553 12222 233444443 22 13589999999998754 2 1111111 1122222
Q ss_pred c-CC--cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 C-DN--RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~-~~--~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
. .. .++ ++|+.++.|+++|++.|.+.+..
T Consensus 323 l~~~~~~~~------~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 323 LYSPIFDVI------PISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HCSCEEEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCCCcEE------EEECCCCcCHHHHHHHHHHHhcc
Confidence 2 11 233 37889999999999999988765
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.76 E-value=7.1e-19 Score=154.77 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
.+|+|+|.+|||||||+|+|++.... ....+.+|.......+.+.++..+.||||||+.+.......+...+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~--- 233 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH--- 233 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH---
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHH---
Confidence 46899999999999999999987642 2333455666556666663347999999999753211111122223222
Q ss_pred ccCCccEEEEEEECCC---CCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 101 AKDGIHAVLLVFSIRN---RFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..+|++|+|+|+++ +-...+ ..++..+..+...-...|+++|+||+|+... ... +..+...
T Consensus 234 -i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~-----------~~~l~~~ 299 (342)
T 1lnz_A 234 -IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEK 299 (342)
T ss_dssp -HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHH
T ss_pred -HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHH-----------HHHHHHH
Confidence 234699999999974 222222 3444555554322234699999999998743 210 1223333
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcCC-CCCc
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNGG-QPYT 218 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~~-~~~~ 218 (311)
+... .....+||.++.++++|+..|.+.+.+... ..|+
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 3321 112337888899999999999998866443 3444
No 138
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=2.6e-17 Score=148.99 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=102.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCCcceeEEEEEEEee--------------C--------CceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS-KAGSSGVTKTCEMQRTMLK--------------A--------GQVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~-~~~~~~~T~~~~~~~~~~~--------------~--------~~~l~ 73 (311)
....++|+++|++++|||||+|+|+|...... .....+.|....+....+. . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 44679999999999999999999997642111 1112345665544332221 0 15799
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
||||||+ +.+.......+..+|++|+|+|++++. .......+..+.. .+. .|+++++||+|+..
T Consensus 85 iiDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 85 FVDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp EEECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred EEECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 9999994 334455555667889999999998665 5566666655543 332 48999999999876
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
. ........+ +..++... +.++++ +||.++.|+++|++.|...++
T Consensus 150 ~--~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 150 E--KQAEENYEQ-----IKEFVKGTIAENAPIIP------ISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp T--TTTTTHHHH-----HHHHHTTSTTTTCCEEE------C------CHHHHHHHHHHHSC
T ss_pred H--HHHHHHHHH-----HHHHHhhcCCCCCeEEE------eeCCCCCCHHHHHHHHHHhCC
Confidence 5 221111111 33333321 334454 789999999999999998664
No 139
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=2.8e-19 Score=161.41 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=109.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc-eEEEEeCCCCCCCCCChHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ-VVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~-~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
|....++|+|+|++|+|||||+|+|++...... ....++|.......+.+ .+. .+.||||||+.++..........
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~- 106 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEK- 106 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHH-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEE-CCCCeEEEEECcCCCcccchhHHHHHH-
Confidence 455679999999999999999999999875222 23456777777777777 554 99999999998764322211111
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
...++..+|++|+|+|+ .....+..++..+.+. ..|+++|+||+|+... ... +. ...+.
T Consensus 107 ---~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~--~~~-~~--------~~~l~ 165 (423)
T 3qq5_A 107 ---ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGE--KAE-EL--------KGLYE 165 (423)
T ss_dssp ---HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTC--CCT-HH--------HHHSS
T ss_pred ---HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCc--cHH-HH--------HHHHH
Confidence 22346678999999998 4556667777777764 3599999999998765 222 11 11122
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
..++.+++ .+||.++.|++++++.|.+.++.
T Consensus 166 ~~~g~~v~------~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 166 SRYEAKVL------LVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTCCCC------CCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHcCCCEE------EEECCCCCCHHHHHHHHHHhhhh
Confidence 22343333 37888899999999999998854
No 140
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2e-17 Score=136.20 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=100.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKE 93 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~ 93 (311)
....++|+|+|.+|+|||||+|+++|... +.....+ ++.......+.+ ++. .+.+|||+|... .
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~----- 100 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMV-DGESATIILLDMWENKG-----E----- 100 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h-----
Confidence 34568999999999999999999997542 2222122 222222333444 554 567899999432 0
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.......++..+|++|+|+|++++-+-.. ..++..+..... ....|+++|.||+|+.....-..++ ...
T Consensus 101 ~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~ 170 (211)
T 2g3y_A 101 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRA 170 (211)
T ss_dssp HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHH
Confidence 11223456788999999999985433222 223333433211 1235999999999986431111111 122
Q ss_pred HHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+....+..++. +||.++.|++++++.|.+.+.
T Consensus 171 ~a~~~~~~~~e------~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 171 CAVVFDCKFIE------TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 23334555554 789999999999999987664
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.76 E-value=1.6e-17 Score=150.62 Aligned_cols=166 Identities=16% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCCcceeEEEEEEEeeC----------------------CceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFM-SKAGSSGVTKTCEMQRTMLKA----------------------GQVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-~~~~~~~~T~~~~~~~~~~~~----------------------~~~l~l 74 (311)
...++|+++|++|+|||||+|+|+|..... ......+.|....+....+.. ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456899999999999999999999764211 111124556655544433310 157999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|||||+. .+.......+..+|++|+|+|++++. .......+..+..+ +. .|+++|+||+|+...
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH
Confidence 9999943 24444445566789999999998665 56666666655543 32 489999999998765
Q ss_pred ChhcHHHHhhhcCCchHHHHHHh---cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 154 NDETLEDYLGRECPKPLKEILQL---CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
....+...+ +..++.. .+.++++ .||.++.|+++|++.|...++.
T Consensus 153 --~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 --EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHH-----HHHHHHhcCcCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence 322222222 3444433 1334554 7888999999999999986653
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.75 E-value=1.4e-17 Score=151.87 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=107.3
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEE
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTM 65 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~ 65 (311)
.+....++|+++|++|+|||||+|+|++....... ....+.|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 45567799999999999999999999765321000 0114678888888888
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC-------hhHHHHHHHHHHHhCCCcc
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS-------KEEGAAIHILESLFGKKIS 138 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~ 138 (311)
+ .+..+.||||||+.+ +...+..++..+|++|+|+|++++.. ......+..+.. .+.
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v--- 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV--- 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence 7 788999999999654 34444445667899999999986543 345555554443 332
Q ss_pred CeEEEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcCC------cEEEecCCchhhhhhHHHHHHHHH
Q 021534 139 DYMIVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCDN------RCVLFDNKTKDAAKRTEQVGKLLS 203 (311)
Q Consensus 139 ~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f~~~~~~sa~~~~~i~~l~~ 203 (311)
.++++++||+|+... .....++.... +..++..++. .+++ +||.++.|+.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~------iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMP------CSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEE------eeccCCcccccccc
Confidence 249999999998642 11223322222 4455554442 2333 78889999988544
No 143
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.75 E-value=1.1e-17 Score=151.26 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=110.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCc-------cccc---cC-----CCCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKK-------AFMS---KA-----GSSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~-------~~~~---~~-----~~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....++|+++|++|+|||||+|+|++.. .+.. .. ...+.|.......+.+ .+..+.||||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence 34566999999999999999999998731 0000 00 0135566665555655 6789999999997
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE 159 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~ 159 (311)
.++ ......++..+|++|+|+|++++........+..+... + .| +++++||+|+..+ ...++
T Consensus 86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~~-~~~~~ 148 (405)
T 2c78_A 86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVDD-PELLD 148 (405)
T ss_dssp GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCCC-HHHHH
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccCc-HHHHH
Confidence 752 22333446788999999999877777777777666542 2 36 8999999998753 12222
Q ss_pred HHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHH------------------HHHHHHHHHHHHH
Q 021534 160 DYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQ------------------VGKLLSLVNSVIV 210 (311)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~------------------i~~l~~~i~~~~~ 210 (311)
....+ +..++..++ .++++ .||.++.+ +.+|++.|...++
T Consensus 149 ~~~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 149 LVEME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 22222 455555544 34444 67777776 7788888887664
No 144
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=5.9e-18 Score=150.89 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=84.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC--cc-----------e---------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG--VT-----------K--------------------------- 57 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~--~T-----------~--------------------------- 57 (311)
..-++|+|+|.+|||||||+|+|+|...++.+.+... .+ .
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3456999999999999999999999876555432110 00 0
Q ss_pred ------------eEEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHH
Q 021534 58 ------------TCEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEG 123 (311)
Q Consensus 58 ------------~~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~ 123 (311)
......+.......++||||||+.+... ....+...+...+..++.++|++|+|+|.... .....
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCH
Confidence 0001111111345799999999987532 12334555666667778899999999987522 11222
Q ss_pred HHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 124 AAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 124 ~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++..+..+.. ...|+++|+||+|++..
T Consensus 191 ~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 191 DAIKISREVDP--SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHSCT--TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHhcc--cCCCEEEEEeCCccCCC
Confidence 34444544332 23589999999998865
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=1e-17 Score=151.40 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-------------CCCCcceeEEEEEEEe----eCCceEEEEeCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-------------GSSGVTKTCEMQRTML----KAGQVVNVIDTPG 79 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-------------~~~~~T~~~~~~~~~~----~~~~~l~liDTPG 79 (311)
..+.++|+++|++|+|||||+|+|++........ .....+.........+ .....+.||||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3456999999999999999999999853211000 0000000000000000 0125789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcH
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETL 158 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 158 (311)
+.+ +.......+..+|++|+|+|++++. .......+..+... +. +|+++|+||+|+.+. ...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~ 147 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEA 147 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHH
Confidence 654 3333334467789999999999665 55566666665543 32 489999999998865 433
Q ss_pred HHHhhhcCCchHHHHHHhc---CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 159 EDYLGRECPKPLKEILQLC---DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+.... +...+..+ +.++++ +||.++.|+.+|++.|.+.++.
T Consensus 148 ~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQ-----IKQFTKGTWAENVPIIP------VSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHH-----HHHHHHhhCCCCCEEEE------EECCCCcChHHHHHHHHHhCCC
Confidence 333332 34444332 234554 7889999999999999986643
No 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=2.5e-18 Score=159.78 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
...++|+|+|.+|+|||||+|+|++... .. ...|.......+.+ .+..+.||||||..+ +...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS-VT----TIPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC-CC----CCCCSSEEEEEEES-SSCEEEEEEECCCGG-----------GSGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccceeEEEEEe-CCEEEEEEECCCcHH-----------HHHH
Confidence 4568999999999999999999998773 21 22366666667777 788999999999554 2223
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
+..++..+|++|+|+|++++-+... ..++..+..... ....|+++|+||+|+... ....+....... .....
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~----~~~~~ 455 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA--MKPHEIQEKLGL----TRIRD 455 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC--CCHHHHHHHTTC----TTCCS
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC--CCHHHHHHHhch----hhhhc
Confidence 4566889999999999985433222 122222221111 123699999999998754 222222111000 00000
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.+..++. +||.++.|+++++++|.+.+..
T Consensus 456 ~~~~~~~------~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 456 RNWYVQP------SCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp SCEEEEE------CBTTTTBTHHHHHHHHHHHCC-
T ss_pred CCeEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 1112333 7889999999999999987754
No 147
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=9.5e-18 Score=153.06 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=102.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--------------cC-----------------CCCCcceeEEEEEEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--------------KA-----------------GSSGVTKTCEMQRTM 65 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--------------~~-----------------~~~~~T~~~~~~~~~ 65 (311)
....++|+++|++|+|||||+|+|++...... +. ...+.|....+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34568999999999999999999986531000 00 002456666666666
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
. .+..+.||||||+.+. ...+..++..+|++|+|+|++++........+..+.. .+. +|+++|+
T Consensus 101 ~-~~~~~~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvvi 164 (434)
T 1zun_B 101 T-AKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAI 164 (434)
T ss_dssp C-SSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEE
T ss_pred c-CCceEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEE
Confidence 6 7789999999997652 2222334678899999999997777777666665554 332 3799999
Q ss_pred eccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHHH
Q 021534 146 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 146 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~~ 200 (311)
||+|+.......+...... +..++..++ .++++ +||.++.|+.+
T Consensus 165 NK~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~i~------vSA~~g~gi~~ 213 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAFVP------MSALKGDNVVN 213 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEEEE------CCTTTCTTTSS
T ss_pred EcCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceEEE------EeccCCCCccc
Confidence 9999875321223333332 556666666 23333 67777888776
No 148
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.74 E-value=1e-17 Score=135.06 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCCcceeEEEEEEEe----eCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK-AFMSKAGSSGVTKTCEMQRTML----KAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~~~~~~~T~~~~~~~~~~----~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
.++|+|+|.+|||||||+|++++.. .+.. ...+..+.......+.+ .....+.+|||||.. .+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~-~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG-MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EF 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH-----------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC-CcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HH
Confidence 4799999999999999999999863 2211 11111222222222211 034588999999942 22
Q ss_pred HHHHHhccCCccEEEEEEECCCCCC-hh-HHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFS-KE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~-~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
......++.++|++++|+|++++.+ .. -..++..+..... ..|+++|.||+|+... ..+...... ....
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~ 140 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVSDE--KQRKACMSK----ITKE 140 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGCCH--HHHHHHHHH----HHHH
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcccc--hhhHHHHHH----HHHH
Confidence 2223334556799999999985432 11 2344444444332 3599999999997654 333211111 0112
Q ss_pred HHHhcCCc----EEEecCCchhhhhhHH-HHHHHHHHHHHHHHH
Q 021534 173 ILQLCDNR----CVLFDNKTKDAAKRTE-QVGKLLSLVNSVIVQ 211 (311)
Q Consensus 173 ~~~~~~~~----~~~f~~~~~~sa~~~~-~i~~l~~~i~~~~~~ 211 (311)
+....+.. ++. +||.++. ++.+|++.|.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~------~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 141 LLNKRGFPAIRDYHF------VNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTTCTTSCEEEEEEE------CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcchhheEE------EecccCchhHHHHHHHHHHHHhc
Confidence 22223333 333 6777774 899999999877653
No 149
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.74 E-value=3.9e-17 Score=155.83 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS-------------------------------------------- 53 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~-------------------------------------------- 53 (311)
...++|+|+|.+|+|||||+|+|+|...+|.+....
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 355899999999999999999999988766543211
Q ss_pred -----CcceeEEEEEEEeeCCceEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhcc-CCccEEEEEEECCCCCChhHH-H
Q 021534 54 -----GVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA--DPEFVSKEIVKCIGMAK-DGIHAVLLVFSIRNRFSKEEG-A 124 (311)
Q Consensus 54 -----~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~d~il~v~d~~~~~~~~~~-~ 124 (311)
+.+.......+..+....++||||||+..... ....+...+...+..+. ..+|++++|+|+++.+...+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111112222332445799999999987431 11222223333333323 578999999999877777665 4
Q ss_pred HHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHH
Q 021534 125 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSL 204 (311)
Q Consensus 125 ~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~ 204 (311)
++..+.. ...|+++|+||+|.+..... ....... ...... ..|......||.++.|+++|++.
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~-~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL~ea 271 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEGTD-ARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDITAA 271 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTTCC-SHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEHHHH
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcchh-hHHHHHH----------Hhhhhh-ccCCceEEecccccccchhHHHH
Confidence 5444432 23599999999999865211 1111110 000000 01222344788899999999999
Q ss_pred HHH
Q 021534 205 VNS 207 (311)
Q Consensus 205 i~~ 207 (311)
|..
T Consensus 272 I~~ 274 (772)
T 3zvr_A 272 LAA 274 (772)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.74 E-value=2.4e-18 Score=159.78 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc----------------cc----CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM----------------SK----AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~----------------~~----~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
..++|+|+|++|+|||||+|+|++..... .. ....+.|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 46899999999999999999997221100 00 00134555555666777 88899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.++. ..+..++..+|++|+|+|++++.+..+..++..+... ..|+++|+||+|+...
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence 998753 1233456778999999999988888777777665542 2599999999998644
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.74 E-value=7.4e-17 Score=145.50 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=110.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------cc----cc----CCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FM----SK----AGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSS 84 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~----~~----~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~ 84 (311)
+.++|+++|++|+|||||+|+|++... +. .. ....+.|.......+.. .+..+.||||||+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~--- 77 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA--- 77 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChH---
Confidence 458999999999999999999987421 00 00 00235566665555555 67899999999953
Q ss_pred CChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHHHhh
Q 021534 85 ADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
.+...+..++..+|++|+|+|++++........+..+.. .+ .| +++++||+|+..+ ...++....
T Consensus 78 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~~-~~~~~~~~~ 143 (397)
T 1d2e_A 78 --------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQD-SEMVELVEL 143 (397)
T ss_dssp --------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred --------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCCC-HHHHHHHHH
Confidence 244455566789999999999987777777776665554 23 36 7899999998753 122222222
Q ss_pred hcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHH---------H-HHHHHHHHHHHHHH
Q 021534 164 RECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTE---------Q-VGKLLSLVNSVIVQ 211 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~---------~-i~~l~~~i~~~~~~ 211 (311)
+ +..++..++ .++++ .||.++. + +.+|++.|.+.++.
T Consensus 144 ~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 E-----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp H-----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred H-----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 455565554 24444 6777655 4 88999999887653
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=1.2e-17 Score=154.30 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCCcceeEEEEEEEeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM-----------------------------SKAGSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~-----------------------------~~~~~~~~T~~~~~~~~~~~~~ 69 (311)
+.++|+++|++|+|||||+|+|++..... ......+.|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 46899999999999999999997652100 0011236777777777777 78
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeEE
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.||||||+.+ +...+..++..+|++|+|+|++++ +.....+.+..+.. .+. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8999999999754 333344456789999999999854 33445555544443 332 4799
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGK 200 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~ 200 (311)
+|+||+|+........++.... +..++...+. .+++ +||.++.|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEEE------CCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------EeeecCCCccc
Confidence 9999999876422334433333 4555554443 2333 56777777653
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=147.99 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEee-CCc--eEEEEeCCCCCCCCC-----
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLK-AGQ--VVNVIDTPGLFDSSA----- 85 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~-~~~--~l~liDTPG~~~~~~----- 85 (311)
-.++|+|+|++|+|||||+|+|++...+.....+ ...|.......+.+. .+. .++||||||+++...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4589999999999999999999987665433211 123433333332221 333 789999999976432
Q ss_pred --ChHHHHHHHHHHHHhc---------cCCccEEEEEEEC-CCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 86 --DPEFVSKEIVKCIGMA---------KDGIHAVLLVFSI-RNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 86 --~~~~~~~~~~~~~~~~---------~~~~d~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
....+...+..++... ...+|+++|+++. .+++...+..++..+. ...|+|+|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~------~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH------NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC------S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc------cCCCEEEEEECCCCCCH
Confidence 1122222222333221 1346789999986 4678777765555442 23599999999998865
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHH---HHHHHHHHHHHH
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQ---VGKLLSLVNSVI 209 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~---i~~l~~~i~~~~ 209 (311)
..+..+... +...+..++.+++. +|+.++.+ +..+...|...+
T Consensus 190 --~ev~~~k~~-----i~~~~~~~~i~~~~------~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 --KERERLKKR-----ILDEIEEHNIKIYH------LPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp --HHHHHHHHH-----HHHHTTCC-CCSCC------CC---------CHHHHHHHHHTC
T ss_pred --HHHHHHHHH-----HHHHHHHCCCCEEe------CCCcCCCcchhHHHHHHHHHhcC
Confidence 555443333 45555555555554 34444444 344444444433
No 154
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=2e-16 Score=140.58 Aligned_cols=174 Identities=13% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CC----------------------ccee-------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS----SG----------------------VTKT------------- 58 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~----~~----------------------~T~~------------- 58 (311)
...++|+|+|.+|+|||||+|+|+|....+..... ++ +|..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34589999999999999999999998764332211 11 0000
Q ss_pred ----------EEEEEEEeeCCceEEEEeCCCCCCCCCC--hHHHHHHHHHHHHhccCC-ccEEEEEEECCCCCChhHHHH
Q 021534 59 ----------CEMQRTMLKAGQVVNVIDTPGLFDSSAD--PEFVSKEIVKCIGMAKDG-IHAVLLVFSIRNRFSKEEGAA 125 (311)
Q Consensus 59 ----------~~~~~~~~~~~~~l~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~il~v~d~~~~~~~~~~~~ 125 (311)
.....+....+..++||||||+.+.... ...+.+.+...+..++.. .+++++|+|++..+...+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-- 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-- 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence 0001111112468999999998764221 122333444444444444 4566667788755665553
Q ss_pred HHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHH
Q 021534 126 IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLV 205 (311)
Q Consensus 126 l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i 205 (311)
+..+..+.. ...|+++|+||+|+.... ....+.+... . ......++. ....||.++.|+.++++.+
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~-~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l 252 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMDEG-TDARDVLENK-L-------LPLRRGYIG---VVNRSQKDIDGKKDITAAL 252 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSCTT-CCCHHHHTTC-S-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHhCc--CCCceEEEeccccccCcc-hhHHHHHhCC-c-------ccccCCceE---EEeCCcccccccccHHHHH
Confidence 233333322 235899999999987551 1122222210 0 000112222 2346888999999999888
Q ss_pred HH
Q 021534 206 NS 207 (311)
Q Consensus 206 ~~ 207 (311)
..
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 155
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=2.5e-19 Score=146.93 Aligned_cols=166 Identities=14% Similarity=0.028 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
....++|+|+|.+|+|||||+|++++...... . .+++.......+.+ ++ ..+.||||||..+ +
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~ 91 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-Y--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------Y 91 (204)
Confidence 35679999999999999999999997654211 1 11111111222222 33 3566999999654 2
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhH--HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECP 167 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~ 167 (311)
......++..+|++|+|+|++++.+..+ ..++..+....+ ..|+++|+||+|+... ....+.... ...
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITY 166 (204)
Confidence 2333445678899999999985433333 245555554332 3599999999998754 211111100 001
Q ss_pred chHHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSV 208 (311)
Q Consensus 168 ~~~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~ 208 (311)
.....+....+. +++ .+||.++.|++++++.|.+.
T Consensus 167 ~~~~~~~~~~~~~~~~------~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 167 PQGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 112222333232 233 47999999999999988654
No 156
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-17 Score=156.88 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=106.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccC-----------------------------CCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKA-----------------------------GSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~ 67 (311)
....++|+++|++|+|||||+|+|++........ ...|.|.......+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3567899999999999999999999764311100 0146677777777777
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
.+..+.||||||+.+ +...+..++..+|++|+|+|++++ ........+..+.. .+. .|
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---Ce
Confidence 788999999999765 455556678889999999999843 23344444444433 332 46
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC-----cEEEecCCchhhhhhHHHHHHH
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDAAKRTEQVGKL 201 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~sa~~~~~i~~l 201 (311)
+++|+||+|+........++.... +..++..++. .+++ +||.++.|+.++
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~i~------vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEEEE------CCTTTCTTTSSC
T ss_pred EEEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccEEe------eecccCCCcccc
Confidence 999999999886422333333332 4555555443 3444 788888888754
No 157
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-16 Score=131.33 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChH--HHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPE--FVSKEI 94 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~--~~~~~~ 94 (311)
.....+|+++|++|||||||+|+|+|...........|.|..... +.+ .+ .+.+|||||+.+...... ......
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 445689999999999999999999987622111223344443332 233 33 688999999865321111 111111
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
..........++++++|+|++.+.+..+..+..++.. . ..|+++|.||+|.... ......+.. +..++
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~----~~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~ 166 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-S----NIAVLVLLTKADKLAS--GARKAQLNM-----VREAV 166 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-c----CCCeEEEEecccCCCc--hhHHHHHHH-----HHHHH
Confidence 2222222367899999999986666555455554443 2 2489999999998754 222211111 33444
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
...+..... .++|+.++.++.++++.|.+....
T Consensus 167 ~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 433322222 236788889999999999887643
No 158
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=154.33 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCCcceeEEEEEEEeeCC--ceEEEEeCCCCCCCCCChH----H--
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAG--SSGVTKTCEMQRTMLKAG--QVVNVIDTPGLFDSSADPE----F-- 89 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~--~~~~T~~~~~~~~~~~~~--~~l~liDTPG~~~~~~~~~----~-- 89 (311)
.++++|+|++|+|||||+|.|+|......... .++.+.....+.+.. .+ ..++++||||+++.. ... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQI-NKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-C-CHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhcc-ccchhhhHHH
Confidence 35699999999999999999999753211111 123332221111111 12 278999999998742 211 1
Q ss_pred --HHHHHHHHHHhc---------cCC--ccE-EEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCCh
Q 021534 90 --VSKEIVKCIGMA---------KDG--IHA-VLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND 155 (311)
Q Consensus 90 --~~~~~~~~~~~~---------~~~--~d~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~ 155 (311)
+...+...+... ... +|+ ++||+|++++++..|..+++.|. ...|+|+|+||+|.+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt~-- 191 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAISK-- 191 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccch--
Confidence 222222222221 112 455 44555777889998877777664 12599999999999876
Q ss_pred hcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 156 ETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
..+..+... +...+...|..++.|+
T Consensus 192 ~E~~~l~~~-----I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 192 SELTKFKIK-----ITSELVSNGVQIYQFP 216 (427)
T ss_dssp HHHHHHHHH-----HHHHHBTTBCCCCCCC
T ss_pred HHHHHHHHH-----HHHHHHHcCCcEEecC
Confidence 555555544 4544444455555544
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.72 E-value=1.7e-19 Score=166.78 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=111.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIG 99 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~ 99 (311)
.++|+++|++|+|||||+|+|++.... ....++.|.....+.+.+..+..++||||||+.++.. ...
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~--~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA--AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH--HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence 478999999999999999999987642 2234566776666666654567899999999876432 233
Q ss_pred hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 100 MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 100 ~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
.++..+|++|+|+|++++....+...+..+... ..|+++++||+|+.......+...+... ......++.
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~~~~~v~~~l~~~-----~~~~e~~~~ 140 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEADPEKVKKELLAY-----DVVCEDYGG 140 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTTSCCSSSSHHHHT-----TSCCCCSSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccccchHHHHHHHHhh-----hhhHHhcCC
Confidence 456789999999999977877777777666542 2489999999998643211111111110 000111122
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+.+ .++||.++.|+++|++.|..++.
T Consensus 141 ~~~i----v~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 141 DVQA----VHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SEEE----CCCCSSSSCSSHHHHHHHHHHHT
T ss_pred CceE----EEEECCCCCCchhHHHHHHHhhh
Confidence 2222 34788999999999999988764
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.72 E-value=5.8e-17 Score=142.62 Aligned_cols=165 Identities=15% Similarity=0.030 Sum_probs=106.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+++|.+|+|||||+|++++.... .. ..+++.......+.. ++. .+.||||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GE--YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CS--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cc--cCCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 4589999999999999999999976542 11 122232332333444 555 4559999996542 23
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHH--HHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhh-----cCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~-----~~~~~ 169 (311)
....++..+|++++|+|++++.+..+. .++..+....+ ..|+++|+||+|+... ....+.... .....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 344567889999999999855443332 45566665443 3699999999998654 221111110 01112
Q ss_pred HHHHHHhcCC-cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDN-RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 170 ~~~~~~~~~~-~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
...+....+. .++. +||.++.|++++++.|.+.+
T Consensus 294 ~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHH
Confidence 3445555554 5554 78889999999999998765
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.71 E-value=7.1e-17 Score=131.08 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
..++|+++|.+|+|||||+|+++|... +.... .+++.......+.+ ++. .+.+|||+|......
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~---------- 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX--EVLGEDTYERTLMV-DGESATIILLDMWENKGENE---------- 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc--cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh----------
Confidence 458999999999999999999996432 22211 11222222333444 554 567899999653100
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL 174 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (311)
.....++..+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+.....-...+ ...+.
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a 141 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXA 141 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHH
Confidence 011223445799999999985433222 2344445544321 235899999999976431111111 12222
Q ss_pred HhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 175 QLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 175 ~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
...+..++. +||.++.|++++++.+.+.+.
T Consensus 142 ~~~~~~~~e------~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFIE------TSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhCCceEE------eccccCCCHHHHHHHHHHHHH
Confidence 334445554 789999999999999887653
No 162
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.70 E-value=3.7e-17 Score=145.60 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|++|+|||||+|+|+ ..+.|.....+.+.+ .+..+.||||||+.++ ...+ ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~----~~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSL----ITA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHH----HHH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHH----HHH
Confidence 99999999999999999998 234556666666777 7889999999998763 1112 223
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE-EEEEe-ccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM-IVVFT-GGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
+..+|++|+|+| +..........+..+.. .+ .|. ++++| |+|+ .. ..++....+ +..++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~----i~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LG----FKHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TT----CCEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cC----CCeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 467899999999 76666666666666554 33 255 88999 9998 43 333322222 4444443331
Q ss_pred c-EEEecCCch--hhhhh---HHHHHHHHHHHHHHHHH
Q 021534 180 R-CVLFDNKTK--DAAKR---TEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 180 ~-~~~f~~~~~--~sa~~---~~~i~~l~~~i~~~~~~ 211 (311)
. +.. .. .||.+ +.|+++|++.|.+.++.
T Consensus 147 ~~~~i----i~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWEC----ISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEE----EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceEE----EecccccccCcCCCCHHHHHHHHHhhccc
Confidence 1 111 12 56777 89999999999887653
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=4.5e-17 Score=148.59 Aligned_cols=155 Identities=21% Similarity=0.299 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc-ccccc----------------------------CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK-AFMSK----------------------------AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~~----------------------------~~~~~~T~~~~~~~~~~~~ 68 (311)
.+.++|+++|++|+|||||+|+|++.. .+... ....+.|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 456899999999999999999998642 11000 01245677777777777 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-------CChhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-------FSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..+.||||||+.+ +...+..++..+|++|+|+|+++. ........+..+.. .+. .|+
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 88999999999876 333445567899999999999854 23334444444333 221 369
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~ 199 (311)
++++||+|+... ....++..... +..++...+ ..+++ +||.++.|+.
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~ 201 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT 201 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence 999999998763 11223333333 566666655 23444 6777777775
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.70 E-value=2e-16 Score=129.05 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVKC 97 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~~ 97 (311)
.++|+|+|++|||||||+|.|+|..... ...+..+.......+.+ ++. .+.+|||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~--~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 4899999999999999999999876421 12223333444445555 554 567899999654211 1
Q ss_pred HHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh
Q 021534 98 IGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL 176 (311)
Q Consensus 98 ~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (311)
...++..++++++|+|+.+..+... ..++..+..... ...|+++|+||+|+......... ....++..
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHH---------HHHHHHHH
Confidence 1223457899999999985443333 234444444322 23589999999997643111111 12344444
Q ss_pred cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 177 CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 177 ~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+..++. +|+.++.++.++++.|.+.+.
T Consensus 140 ~~~~~~d------~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIE------TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4443333 677888999999999887664
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.69 E-value=2.3e-17 Score=151.21 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-cccc-------------cC---------------CCCCcceeEEEEEEEeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-AFMS-------------KA---------------GSSGVTKTCEMQRTMLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-~~~~-------------~~---------------~~~~~T~~~~~~~~~~~~~ 69 (311)
..++|+++|++|+|||||+|+|++.. .+.. +. ...+.|..+....+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45899999999999999999998642 1100 00 0145676666666666 77
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCCh-------hHHHHHHHHHHHhCCCccCeEE
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSK-------EEGAAIHILESLFGKKISDYMI 142 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 142 (311)
..+.||||||+.+ +...+..++..+|++|+|+|++++... .....+..+.. .+. .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 8999999999764 444455667899999999999854322 34444443332 332 3599
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRTEQVG 199 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~~~i~ 199 (311)
+|+||+|+.......++..... +..++..++ .++++ +||.++.|+.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence 9999999874222333333332 455555544 34554 5666666664
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.69 E-value=7e-17 Score=151.68 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK-----------------AGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~l~liDTPG~~~ 82 (311)
.++|+++|++|+|||||+|+|++... ....+.+.|.......+.+. ....++||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 47999999999999999999998654 21122233333222222210 112599999999887
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
+... ...++..+|++|+|+|+++++...+...+..+.. . ..|+++++||+|+..
T Consensus 83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-~----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRM-Y----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-c----CCeEEEEeccccccc
Confidence 5322 2244677899999999998888888777776664 2 249999999999864
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=1.2e-18 Score=159.87 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI 98 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~ 98 (311)
..++|+++|++|+|||||+++|++... ......+.|.....+.+.+ ++..++||||||+.++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~~~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--ASGEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--SBTTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--ccccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence 348999999999999999999987543 2222345666666666666 7789999999998775321 2
Q ss_pred HhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 99 GMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 99 ~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
...+..+|++|+|+|++++........+..+.. .+ .|+++++||+|+.......+...+... ..+...++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~-~~----vPiIVviNKiDl~~~~~~~v~~~l~~~-----~~~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA-AQ----VPVVVAVNKIDKPEADPDRVKNELSQY-----GILPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH-TT----CCEEEEEECSSSSTTCCCCTTCCCCCC-----CCCTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh-cC----ceEEEEEEeccccccCHHHHHHHHHHh-----hhhHHHhC
Confidence 344677899999999987777777666665553 22 489999999998643112222111110 00001122
Q ss_pred --CcEEEecCCchhhhhhHHHHHHHHHHHHH
Q 021534 179 --NRCVLFDNKTKDAAKRTEQVGKLLSLVNS 207 (311)
Q Consensus 179 --~~~~~f~~~~~~sa~~~~~i~~l~~~i~~ 207 (311)
.++++ +||.++.|+.+|++.|..
T Consensus 139 ~~~~~v~------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQFVH------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSCEEEE------CCTTTCTTCTTHHHHTTT
T ss_pred CCccEEE------EeeeeccCcchhhhhhhh
Confidence 23333 788999999999999864
No 168
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.68 E-value=4.9e-17 Score=152.32 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEee--C--CceEEEEeCCCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLK--A--GQVVNVIDTPGL 80 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~--~--~~~l~liDTPG~ 80 (311)
+..++|+++|++|+|||||+++|++....... ....+.|.......+.|. + ...++||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999753210000 001344554444444442 1 257899999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHH
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.++ ...+..++..+|++|+|+|++++.+..+...+..+.. . ..|+++++||+|+.... ...
T Consensus 84 ~dF-----------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~----~ipiIvviNKiDl~~a~---~~~ 144 (600)
T 2ywe_A 84 VDF-----------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-Q----DLVIIPVINKIDLPSAD---VDR 144 (600)
T ss_dssp GGG-----------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T----TCEEEEEEECTTSTTCC---HHH
T ss_pred HhH-----------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C----CCCEEEEEeccCccccC---HHH
Confidence 773 1122333556799999999997877777665554443 2 24899999999987541 221
Q ss_pred HhhhcCCchHHHHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
.. ..+...++. .+++ .||.++.|+.+|++.|.+.++.
T Consensus 145 v~--------~el~~~lg~~~~~vi~------vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 145 VK--------KQIEEVLGLDPEEAIL------ASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH--------HHHHHTSCCCGGGCEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH--------HHHHHhhCCCcccEEE------EEeecCCCchHHHHHHHHhccc
Confidence 11 122222232 2333 7899999999999999888764
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=7.1e-17 Score=151.51 Aligned_cols=163 Identities=21% Similarity=0.186 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCCcceeEEEEEEEeeC----CceEEEEeCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSK-------------AGSSGVTKTCEMQRTMLKA----GQVVNVIDTPGLF 81 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-------------~~~~~~T~~~~~~~~~~~~----~~~l~liDTPG~~ 81 (311)
...+|+++|++|+|||||+++|++....... ....+.|.......+.|.. +..++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4589999999999999999999863210000 0013456655555565521 2589999999987
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY 161 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 161 (311)
++. ..+ ..++..+|++|+|+|++++.+..+...+..+.. . ..|+++|+||+|+.... ..+.
T Consensus 83 dF~-------~ev----~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~----~ipiIvViNKiDl~~a~---~~~v 143 (599)
T 3cb4_D 83 DFS-------YEV----SRSLAACEGALLVVDAGQGVEAQTLANCYTAME-M----DLEVVPVLNKIDLPAAD---PERV 143 (599)
T ss_dssp GGH-------HHH----HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T----TCEEEEEEECTTSTTCC---HHHH
T ss_pred HHH-------HHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----CCCEEEeeeccCccccc---HHHH
Confidence 631 222 233455699999999987777766665554443 2 24999999999987542 2221
Q ss_pred hhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 162 LGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
... +...+......+++ +||.++.|+++|++.|.+.++.
T Consensus 144 ~~e-----i~~~lg~~~~~vi~------vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 144 AEE-----IEDIVGIDATDAVR------CSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHH-----HHHHTCCCCTTCEE------ECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHH-----HHHHhCCCcceEEE------eecccCCCchhHHHHHhhcCCC
Confidence 111 22222111112343 7889999999999999988754
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=7.2e-17 Score=133.54 Aligned_cols=123 Identities=8% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|++|+|||||+|+|++......... ...|... .+ ....+.+|||||+.... ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence 34568999999999999999999998764221111 1112111 11 45678999999986532 11222
Q ss_pred HHHhccCCccEEEEEEECC---CCCChhHHHHHHHHHHHhC-CCccCeEEEEEeccCCCCC
Q 021534 97 CIGMAKDGIHAVLLVFSIR---NRFSKEEGAAIHILESLFG-KKISDYMIVVFTGGDELED 153 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~---~~~~~~~~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~ 153 (311)
++......+|++|||+|++ ..+......+...+..... .....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 2222233479999999998 3344333333333332110 1123599999999998866
No 171
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=6.2e-17 Score=145.31 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEe--------------------eC---CceEEEEeC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTML--------------------KA---GQVVNVIDT 77 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~--------------------~~---~~~l~liDT 77 (311)
++|+++|.||+|||||+|+|++... .....+++|.........+ .. ...+.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 4799999999999999999999873 2223344454433332111 02 247999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
||+...... .+.+...+..+++.+|++++|+|+++
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 998652111 11122223345788999999999974
No 172
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-16 Score=127.01 Aligned_cols=128 Identities=7% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
....++|+|+|.+|+|||||+|+|++......... ...|.. ..+ .+..+.+|||||..+..... ..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~-------~~ 110 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKL-------SD 110 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH-------HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCcee-----eee-cCCeEEEEECCCCchHHHHH-------HH
Confidence 35678999999999999999999998764221111 111111 112 46688999999987653221 12
Q ss_pred HHHhccCCccEEEEEEECC-CCCChhH-HHHHHHHHHHhC--CCccCeEEEEEeccCCCCCChhcHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIR-NRFSKEE-GAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+......+|++|||+|++ ++-+... ..++..+..... .....|+++|+||+|+... ..+.+
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~ 176 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSK 176 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHH
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHH
Confidence 2222235579999999997 3222111 122222222111 1123599999999998866 44443
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=1.3e-16 Score=149.34 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=97.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEE----EEEee---CCceEEEEeCCCCCCCCCChHH
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQ----RTMLK---AGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~----~~~~~---~~~~l~liDTPG~~~~~~~~~~ 89 (311)
....++|+++|.+|||||||+|++++...........+.+...... .+... .+..+.+|||||........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~-- 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH-- 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC--
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH--
Confidence 3456999999999999999999999876421111111221111100 11111 24689999999965533211
Q ss_pred HHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCch
Q 021534 90 VSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP 169 (311)
Q Consensus 90 ~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 169 (311)
..++..+|++|+|+|++ .. .....++..+....+ ..|+++|+||+|+........+.
T Consensus 116 ---------~~~l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~--------- 172 (535)
T 3dpu_A 116 ---------QFFMTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKK--------- 172 (535)
T ss_dssp ---------HHHHHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHH---------
T ss_pred ---------HHHccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHH---------
Confidence 11244579999999997 33 334566777776543 26999999999987542112211
Q ss_pred HHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+...+...+.+++. +||.++.|+++|+..|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 173 INERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp HHHHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTC
T ss_pred HHHHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhc
Confidence 33444455666665 7889999999999999988754
No 174
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.4e-16 Score=137.93 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHH
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIV 95 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~ 95 (311)
...+..+|+++|.||+|||||+|+|+|... ...+.+++|.......+.+ .+.++.|+||||+.............+.
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l 144 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVI 144 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHH
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHH
Confidence 345668999999999999999999999875 3455678999998888888 8999999999999764322222333333
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC-ccCeEEEEEeccCCC
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK-ISDYMIVVFTGGDEL 151 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~ 151 (311)
.. .+.+|++++|+|+++++.. ...+..-....+.. ..+|.++++||+|..
T Consensus 145 ~~----i~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 145 AV----ARTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HH----HHHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HH----HHhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 33 3456999999999865432 33333222223332 235889999999963
No 175
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.66 E-value=1.1e-15 Score=123.86 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=99.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCc--eEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQ--VVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
..++|+|+|++|||||||+|.|+|.... ....+..+.......+.+ ++. .+.+|||||.......
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~--~~~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~---------- 94 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI---------- 94 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCC--CSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh----------
Confidence 3589999999999999999999987642 122233444444555556 665 4557999997653221
Q ss_pred HHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
+..++..++++++|+|+....+... ..++..+..... ...|+++++||+|+......... ....++.
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~ 162 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTD---------EARAFAE 162 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH---------HHHHHHH
Confidence 1223456789999999874332222 233444443322 23589999999997643111111 1234444
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
..+..++. +|+.++.++.++++.|.+.+
T Consensus 163 ~~~~~~ld------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGLSFIE------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 44443333 67788899999999987643
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.66 E-value=1.6e-15 Score=149.03 Aligned_cols=166 Identities=19% Similarity=0.216 Sum_probs=107.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCcc------ccc--------cCCCCCcceeEEEEEEEeeCCceEEEEeCCCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKA------FMS--------KAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLF 81 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~--------~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~ 81 (311)
.....++|+++|++|+|||||+|+|++... +.. .....|.|.......+.. .+..+.||||||+.
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH
Confidence 345669999999999999999999987410 000 001235555554444555 67899999999944
Q ss_pred CCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe-EEEEEeccCCCCCChhcHHH
Q 021534 82 DSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED 160 (311)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~ 160 (311)
.+.......+..+|++|+|+|++++........+..+.. .+ .| +|+++||+|+..+. ..++.
T Consensus 371 -----------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lg----IP~IIVVINKiDLv~d~-e~le~ 433 (1289)
T 3avx_A 371 -----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VG----VPYIIVFLNKCDMVDDE-ELLEL 433 (1289)
T ss_dssp -----------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HT----CSCEEEEEECCTTCCCH-HHHHH
T ss_pred -----------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cC----CCeEEEEEeecccccch-hhHHH
Confidence 344555566889999999999987777777777766654 33 35 89999999987531 22222
Q ss_pred HhhhcCCchHHHHHHhcC-----CcEEEecCCchhhhhhH--------HHHHHHHHHHHHHHH
Q 021534 161 YLGRECPKPLKEILQLCD-----NRCVLFDNKTKDAAKRT--------EQVGKLLSLVNSVIV 210 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~sa~~~--------~~i~~l~~~i~~~~~ 210 (311)
...+ +..++...+ .++++ +||.++ .++.+|++.|...++
T Consensus 434 i~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 434 VEME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence 2222 455555554 24444 555555 678999999887654
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.65 E-value=7e-18 Score=158.92 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=88.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCCcceeEEEEEEEee
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSK-----------------------------AGSSGVTKTCEMQRTMLK 67 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~ 67 (311)
....++|+++|++|+|||||+|+|++....... ....+.|.......+.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 456789999999999999999999753210000 00246777777777777
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC-----C--ChhHHHHHHHHHHHhCCCccCe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR-----F--SKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
.+..+.||||||+.++.. .+...+..+|++|+|+|++++ + .......+..+.. .+. .+
T Consensus 253 ~~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SE 317 (592)
T ss_dssp ------CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CC
T ss_pred CCeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---Ce
Confidence 778999999999876321 122335678999999999853 3 4555666555554 332 24
Q ss_pred EEEEEeccCCCCCChhcHHHHhhhcCCchHHHHH-HhcCC-----cEEEecCCchhhhhhHHHHH--------------H
Q 021534 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDN-----RCVLFDNKTKDAAKRTEQVG--------------K 200 (311)
Q Consensus 141 ~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~f~~~~~~sa~~~~~i~--------------~ 200 (311)
+|+|+||+|+.......+...... +..++ ...+. .+++ +||.++.|+. .
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~ii~------iSA~~G~gI~e~~~~~~~~w~~g~~ 386 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHFVP------ISAISGTNLIQKDSSDLYKWYKGPT 386 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEEEE------ECSSSCSSSCSCCCCGGGGTCCSCC
T ss_pred EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEEEE------EecccCcccccccccccccccchHH
Confidence 999999999875322334433333 45555 44443 2343 6788888887 7
Q ss_pred HHHHHHHHHH
Q 021534 201 LLSLVNSVIV 210 (311)
Q Consensus 201 l~~~i~~~~~ 210 (311)
|++.|..+++
T Consensus 387 Lle~l~~~~p 396 (592)
T 3mca_A 387 LLSALDQLVP 396 (592)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHHhhcc
Confidence 8888876543
No 178
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=6e-16 Score=144.56 Aligned_cols=137 Identities=22% Similarity=0.367 Sum_probs=82.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeE-EEEE--------------------------------
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTC-EMQR-------------------------------- 63 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~-~~~~-------------------------------- 63 (311)
....++|+|+|.+|+|||||+|+|+|........+....|... ....
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3467899999999999999999999987531111222222111 1100
Q ss_pred ----EEeeCC---ceEEEEeCCCCCCCCCChHHHHHH--HHHHHHhccCCccEEEEEEECCC-CCChhHHHHHHHHHHHh
Q 021534 64 ----TMLKAG---QVVNVIDTPGLFDSSADPEFVSKE--IVKCIGMAKDGIHAVLLVFSIRN-RFSKEEGAAIHILESLF 133 (311)
Q Consensus 64 ----~~~~~~---~~l~liDTPG~~~~~~~~~~~~~~--~~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~l~~l~~~~ 133 (311)
+.+ .+ ..+.||||||+.+... ..+... +...+..++..+|++|||+|+++ .+...+..++..+..
T Consensus 142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~--~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 142 RFMCAQL-PNQVLESISIIDTPGILSGAK--QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp TEEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred cceEEec-cccccCCEEEEECcCCCCcch--hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 000 00 3689999999986311 011110 22233334556799999999985 356666666655543
Q ss_pred CCCccCeEEEEEeccCCCCCChhcHHHHhh
Q 021534 134 GKKISDYMIVVFTGGDELEDNDETLEDYLG 163 (311)
Q Consensus 134 ~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 163 (311)
...|+++|+||+|++.. ..+.....
T Consensus 217 ---~~~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 217 ---HEDKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp ---CGGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred ---cCCCEEEEEECCCccCH--HHHHHHHH
Confidence 23589999999998865 55554444
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.63 E-value=5.4e-16 Score=148.70 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCcccc-------cc---------CCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILGKKAFM-------SK---------AGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~-------~~---------~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
.+....++|+|+|++|+|||||+|+|+...... .+ ....+.|.......+.+ .+..++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence 344567999999999999999999998321100 00 00234566666666777 78899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.++. ... ..++..+|++|+|+|++++.+..+...+..+... ..|+++|+||+|....
T Consensus 86 G~~df~-------~~~----~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFT-------IEV----ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCH-------HHH----HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred CccchH-------HHH----HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence 987631 222 2234457999999999977777777666665542 2589999999998754
No 180
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.61 E-value=6.1e-16 Score=142.14 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc-cc------------------------cc----CCCCCcceeEEEEEEEeeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA-FM------------------------SK----AGSSGVTKTCEMQRTMLKA 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~------------------------~~----~~~~~~T~~~~~~~~~~~~ 68 (311)
...++|+++|++++|||||+|+|++... +. .. ....+.|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 4568999999999999999999974221 00 00 00235677777667777 7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCC-------hhHHHHHHHHHHHhCCCccCeE
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFS-------KEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
+..+.||||||+.++ ...+...+..+|++|+|+|++++.. ......+..+.. .+. .++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 889999999997653 2333445678999999999985531 234444444332 332 239
Q ss_pred EEEEeccCCCCC--ChhcHHHHhhhcCCchHHHHHHhc-CC------cEEEecCCchhhhhhHHHHHHH
Q 021534 142 IVVFTGGDELED--NDETLEDYLGRECPKPLKEILQLC-DN------RCVLFDNKTKDAAKRTEQVGKL 201 (311)
Q Consensus 142 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~f~~~~~~sa~~~~~i~~l 201 (311)
++++||+|+... ....++....+ +..++... +. .+++ +||.++.|+.++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~i~------vSA~~g~~i~~l 242 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDR 242 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceEEe------cccccccccccc
Confidence 999999998642 11223332222 44555444 32 2333 677777777654
No 181
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=128.09 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred CccEEEEEEECCCC--CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHh-cCC
Q 021534 104 GIHAVLLVFSIRNR--FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL-CDN 179 (311)
Q Consensus 104 ~~d~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 179 (311)
++|++|+|+|++++ .+-.. ..++..+...... ...|+++|+||+|+... ..+++ ...+... .+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~--~~v~~---------~~~~~~~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVE--RYIRD---------AHTFALSKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCH--HHHHH---------HHHHHHTSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccccc--HHHHH---------HHHHHHhcCCC
Confidence 58999999999854 34333 3444444443111 12599999999997643 33321 2333333 244
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
.++. +||.++.|++++++.|.+.+
T Consensus 230 ~~~e------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 230 QVVE------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred eEEE------EECCCCCCHHHHHHHHHHHh
Confidence 5554 78899999999999988765
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.60 E-value=9.4e-15 Score=131.46 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGM 100 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~ 100 (311)
..|+|+|++|||||||+|+|++... .....+.+|.......+.+.....++++||||+.+.......+...+. .
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl----~ 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----R 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----H
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH----H
Confidence 4589999999999999999999754 222334445555555566522378999999998652100000111111 1
Q ss_pred ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCC
Q 021534 101 AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 179 (311)
Q Consensus 101 ~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (311)
....++++++|+|++ .++... ....+.+..+...-..+|.++|+||+|.... ..+.. +...+...+.
T Consensus 232 ~~era~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred HHHHHHhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 235679999999996 222211 1222333322110013589999999997643 22221 3334444455
Q ss_pred cEEEecCCchhhhhhHHHHHHHHHHHHHHHHHcC
Q 021534 180 RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQNG 213 (311)
Q Consensus 180 ~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~~~ 213 (311)
.++. +||.++.++++|++.|.+.+....
T Consensus 300 ~vi~------iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 300 AVLP------VSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred eEEE------EECCCccCHHHHHHHHHHHHHhcc
Confidence 5655 788888999999999999886543
No 183
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.59 E-value=1.4e-15 Score=131.73 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMA 101 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 101 (311)
+|+++|.+|+|||||++.+.+... +......++|..+....+ .....+.||||||..+..... + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 589999999999999998886532 221222334444443333 134689999999977642110 0 12334
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
+++++++|||+|+++++...-.++..++..........|++++.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 7899999999999866333223332333322111123599999999998755
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.59 E-value=1.4e-14 Score=139.06 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=83.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCcc-cccc---------CC------CCCcceeEEEEEEEeeCC-------ceEE
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKA-FMSK---------AG------SSGVTKTCEMQRTMLKAG-------QVVN 73 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~---------~~------~~~~T~~~~~~~~~~~~~-------~~l~ 73 (311)
....++|+|+|++|+|||||+++|+.... +... .. ..+.|.......+.+ .+ ..++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 45678999999999999999999975321 1000 00 134566666666666 55 7899
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||||||+.++ ...+..++..+|++|+|+|+++.........+..+... ..|+++++||+|....
T Consensus 86 liDTPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDF-----------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccch-----------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence 9999998763 22223345567999999999877766666666554431 2489999999997654
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.58 E-value=1.1e-14 Score=135.81 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=86.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--------------------ccCCCCCcceeEEEEEEEeeCCceEEEEeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM--------------------SKAGSSGVTKTCEMQRTMLKAGQVVNVIDTP 78 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~--------------------~~~~~~~~T~~~~~~~~~~~~~~~l~liDTP 78 (311)
...+|+|+|+.++|||||..+|+...... ......|.|.......+.| ++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 46899999999999999999996322100 0011235677777778888 89999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 79 GLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
|+.|+. .+.... ++-+|++|+|+|+..+.......+++...+. ..|.++++||+|....
T Consensus 109 GHvDF~-------~Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence 999974 334444 3456999999999989999998888877763 2489999999997644
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.57 E-value=2.8e-14 Score=126.68 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=66.9
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+..+ ... ....+|++|+|+|.+...... .+.... ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~~~~~------~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTGDQLQ------GIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTTCTTT------TCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCCccHH------HHHHhH---hhcCCEEEEEC
Confidence 4678999999997641 011 136789999999986221111 111100 12489999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhc-------CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLC-------DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|.... ......... +...+... +.+++. +||.++.|+++|++.|.+.+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLT------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEE------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEE------EEcCCCCCHHHHHHHHHHHHHH
Confidence 997644 333332222 33333222 334554 7899999999999999988754
No 187
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.57 E-value=7.9e-15 Score=136.28 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcccccc--------------------CCCCCcceeEEEEEEEeeCCceEEEEeC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSK--------------------AGSSGVTKTCEMQRTMLKAGQVVNVIDT 77 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~--------------------~~~~~~T~~~~~~~~~~~~~~~l~liDT 77 (311)
...++|+++|++|+|||||+|+|++....... ....+.|.......+.+ .+..++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 35689999999999999999999864211000 00123444444455666 7889999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 78 PGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 78 PG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||+.++. ..+..++..+|++|+|+|++++.......++..+.. ...|+++++||+|+...
T Consensus 90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence 9987743 112334667899999999987776666555544432 23589999999998755
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=4.8e-15 Score=142.20 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCccccc--c--------CC------CCCcceeEEEEEEEeeCCceEEEEeCCCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGKKAFMS--K--------AG------SSGVTKTCEMQRTMLKAGQVVNVIDTPGL 80 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~--~--------~~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~ 80 (311)
.....+|+|+|++|+|||||+|+|++...... + .. ..+.|.......+.+ .+..++||||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 45679999999999999999999984211000 0 00 134555555566777 7889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.++. ..... ++..+|++|+|+|++++.+..+...+..+... ..|+++|+||+|+...
T Consensus 86 ~df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred cchH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence 8743 11222 23457999999999878887777777766542 2589999999998754
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.57 E-value=2.1e-14 Score=124.53 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=83.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEee-C--CceEEEEeCCCCCCCCCC---
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLK-A--GQVVNVIDTPGLFDSSAD--- 86 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~-~--~~~l~liDTPG~~~~~~~--- 86 (311)
.-.++|+|+|++|+|||||+|.|+|...++....+ ...|.......+... . ...+++|||||+++....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999999987443332110 011222222222221 1 237899999999543110
Q ss_pred hHHHHHHHH----HHHHh---------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCC
Q 021534 87 PEFVSKEIV----KCIGM---------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELE 152 (311)
Q Consensus 87 ~~~~~~~~~----~~~~~---------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 152 (311)
...+...+. ..+.. ....+++++|+++.+ +.+...+..+ ++.+.. ..|+++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~---l~~l~~---~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF---MKAIHN---KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH---HHHHTT---TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH---HHHHHh---cCCEEEEEEeCCCCC
Confidence 011222111 11111 112356788887754 3577766443 444322 248999999999876
Q ss_pred CChhcHHHHhhhcCCchHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 153 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
. ..+..+... +...+...+..++. +||.++ ++++++..+.+.+.
T Consensus 170 ~--~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 L--KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp H--HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHH
T ss_pred H--HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhh
Confidence 5 444333332 45566666665554 677788 89998888776654
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.56 E-value=1.1e-14 Score=139.06 Aligned_cols=116 Identities=26% Similarity=0.251 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcccc--ccC--------C------CCCcceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKAFM--SKA--------G------SSGVTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~~~--~~~--------~------~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
...+|+++|++|+|||||+++|++..... .+. . ..+.|.......+.+ .+..++||||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 45899999999999999999998432210 000 0 124555666666666 788999999999775
Q ss_pred CCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC
Q 021534 83 SSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL 151 (311)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 151 (311)
+ ...+..++..+|++++|+|+++++......++..+... + .|+++++||+|..
T Consensus 87 f-----------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-----------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp G-----------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred h-----------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 3 12222334457999999999878887777777766652 2 4899999999987
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=4.4e-14 Score=124.97 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+.+. . ..+ ...+|++++|+|++.+.. ...+. ..++ ..|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~----~~l-------~~~~d~vl~V~d~~~~~~---~~~i~--~~il----~~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---E----FAV-------ADMVDMFVLLLPPAGGDE---LQGIK--RGII----EMADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---H----HHH-------HTTCSEEEEEECCC-----------------C----CSCSEEEECC
T ss_pred CCCCEEEEECCCcchh---h----hhH-------HhhCCEEEEEEcCCcchh---HHHhH--HHHH----hcCCEEEEee
Confidence 5668899999998642 1 111 346899999999874321 11111 0112 2378999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHh-------cCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQL-------CDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+... ......+.. +...+.. +..++++ +|+.++.|+++|+++|.+.+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~------iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIR------ISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 997643 221111111 1111111 1223333 7889999999999999987743
No 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.52 E-value=2.9e-11 Score=112.89 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCCcceeEEEEEEEe--eCCceEEEEeCCCCCCCCC-ChHHHHHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA-FMSKAGSSGVTKTCEMQRTML--KAGQVVNVIDTPGLFDSSA-DPEFVSKE 93 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~~~T~~~~~~~~~~--~~~~~l~liDTPG~~~~~~-~~~~~~~~ 93 (311)
.+..+|+|+|.||+|||||+|+|+|... +..+..+.++|..+..+.... ..+..+.||||||+.+... ....-...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 4558899999999999999999999874 223333335555554332221 1567899999999997543 22211121
Q ss_pred HHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 94 IVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 94 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
+.-.+..+ + ++|+|+...++..+...+..+.+
T Consensus 116 fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 21111111 2 45566556788888777666554
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.52 E-value=3.3e-13 Score=119.08 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.||||||+.++. .. + ...+|++++|+|++.... ...+.. ... ..|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~~-------~~----~---~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~----~~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSE-------TE----V---ARMVDCFISLQIAGGGDD---LQGIKK--GLM----EVADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTHH-------HH----H---HTTCSEEEEEECC---------CCCCH--HHH----HHCSEEEECC
T ss_pred cCCCEEEEeCCCccchH-------HH----H---HHhCCEEEEEEeCCccHH---HHHHHH--hhh----cccCEEEEEC
Confidence 56789999999987521 11 1 367899999999863211 001100 001 1378999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC-------CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD-------NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|.... ......+.. +...+...+ ..+++ +|+.++.|+++|++.|...+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLT------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEE------CBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 997643 233322222 233222222 23333 788899999999999988764
No 194
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.51 E-value=5.9e-14 Score=119.60 Aligned_cols=153 Identities=19% Similarity=0.233 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CCcceeEEEEEEEeeC---CceEEEEeCCCCCCCCCCh---H
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGS-----SGVTKTCEMQRTMLKA---GQVVNVIDTPGLFDSSADP---E 88 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~-----~~~T~~~~~~~~~~~~---~~~l~liDTPG~~~~~~~~---~ 88 (311)
.++|+|+|++|+|||||+|.|+|......+... ...+.......+.... ...++++|+||+++..... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 378999999999999999999986543222110 0111111111111101 1378999999998643211 1
Q ss_pred HHHHH----HHHHHHh----------ccCCccEEEEEEECC-CCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 89 FVSKE----IVKCIGM----------AKDGIHAVLLVFSIR-NRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 89 ~~~~~----~~~~~~~----------~~~~~d~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+... +...... .+..+++++|++|.. +++...+..++..+.+. .++++|+||+|.+..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 22222 2222211 123469999999864 78999998887777653 489999999999977
Q ss_pred ChhcHHHHhhhcCCchHHHHHHhcCCcEEEec
Q 021534 154 NDETLEDYLGRECPKPLKEILQLCDNRCVLFD 185 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 185 (311)
..+..++.. +...+...+..++.|.
T Consensus 156 --~e~~~~k~~-----i~~~l~~~~i~i~~~~ 180 (270)
T 3sop_A 156 --EEKSEFKQR-----VRKELEVNGIEFYPQK 180 (270)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred --HHHHHHHHH-----HHHHHHHcCccccCCC
Confidence 666666655 6666777777766654
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.48 E-value=8.2e-15 Score=139.38 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcccccc----------CCC------CCcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSK----------AGS------SGVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~----------~~~------~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
..||+|+||.++|||||..+|+........ ..+ .|.|.......+.| ++..++||||||+.|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 478999999999999999998632211000 000 25677777777888 8999999999999995
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
. .+.. .+++-+|++|+|+|+..+........++.+.+.. .|.++++||+|....
T Consensus 81 ~-------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 L-------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKMG-----IPTIFFINKIDQNGI 134 (638)
T ss_dssp H-------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT-----CSCEECCEECCSSSC
T ss_pred H-------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC-----CCeEEEEeccccccC
Confidence 2 3333 3355679999999999889888888888777643 378999999997644
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=7.6e-14 Score=122.92 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=56.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liDTPG~~~~ 83 (311)
++|+++|.||+|||||+|+|++... .....+++|.......+.+ .+ ..+.||||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 6899999999999999999998763 2223345555554444444 33 47999999998753
Q ss_pred CCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 84 SADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
... .+.+...+...++.+|++++|+|+++
T Consensus 80 a~~----~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASK----GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHH----HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc----cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 100 01111111123567899999999873
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.45 E-value=3.3e-13 Score=119.61 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEee--------------------CCceEEEEeCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLK--------------------AGQVVNVIDTPGL 80 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~--------------------~~~~l~liDTPG~ 80 (311)
++|+++|.||+|||||+|+|++... .....+++|.........+. .+..+.||||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999998642 11222333433322222221 2357999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC
Q 021534 81 FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN 116 (311)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~ 116 (311)
.........+...+.. .++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~----~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLA----HIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHH----HHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHH----HHHhCCEEEEEEECCC
Confidence 7643222222222222 2457799999999873
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=8.9e-14 Score=136.03 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccC--------------CCCCcceeEEEEEEEee---------------C
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKA--------------GSSGVTKTCEMQRTMLK---------------A 68 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~--------------~~~~~T~~~~~~~~~~~---------------~ 68 (311)
...++|+|+|++|+|||||+|+|++........ ...+.|.......+.|. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356899999999999999999998753211100 01233444444444442 1
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
+..++||||||+.++. .. +..+++.+|++|+|+|++++.+..+...+..+.. ...|+++++||+
T Consensus 97 ~~~i~liDTPG~~df~-------~~----~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS-------SE----VTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSC-------HH----HHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECH
T ss_pred CceEEEEECcCchhhH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCeEEEEECC
Confidence 5689999999998853 11 2233567799999999997877777665554443 124899999999
Q ss_pred CCC
Q 021534 149 DEL 151 (311)
Q Consensus 149 D~~ 151 (311)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.41 E-value=1.5e-12 Score=125.42 Aligned_cols=122 Identities=23% Similarity=0.261 Sum_probs=85.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCCcceeEEEEEEEee------CCceEE
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMS----------------KAGSSGVTKTCEMQRTMLK------AGQVVN 73 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~----------------~~~~~~~T~~~~~~~~~~~------~~~~l~ 73 (311)
|-+...||+|+||.++|||||..+|+....... .....|.|.......+.|. ++..++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 445678999999999999999999864321100 0111356666666667663 146899
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 74 VIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 74 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
||||||+.|+. .+....+.. +|++|+|+|+..+.......+++...+.. .|.++++||+|....
T Consensus 89 lIDTPGHvDF~-------~Ev~~aLr~----~DgavlvVDaveGV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVDFT-------IEVERSLRV----LDGAVVVFCGTSGVEPQSETVWRQANKYG-----VPRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHHT-----CCEEEEEECSSSTTC
T ss_pred EEeCCCCcccH-------HHHHHHHHH----hCeEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEccccccCc
Confidence 99999999963 344444443 49999999999899999888888776642 489999999997644
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.38 E-value=2e-12 Score=109.78 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=96.6
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHh-----CCccccccCCCCCcce----------eEEEEEE-------------
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSIL-----GKKAFMSKAGSSGVTK----------TCEMQRT------------- 64 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~-----g~~~~~~~~~~~~~T~----------~~~~~~~------------- 64 (311)
++........+++.|.+|+||||+++.|. |..+......+..... .......
T Consensus 7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1yrb_A 7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVE 86 (262)
T ss_dssp CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHH
T ss_pred cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEe
Confidence 34444556889999999999999999998 6654333222211000 0000000
Q ss_pred -----------------EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHH-HH
Q 021534 65 -----------------MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGA-AI 126 (311)
Q Consensus 65 -----------------~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~l 126 (311)
.+..+..+.||||||..+. .....+...+...+.. +++++++|+.......+.. ..
T Consensus 87 ~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~ 160 (262)
T 1yrb_A 87 SYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVR 160 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHH
T ss_pred cHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHH
Confidence 0001237899999996531 0011111112223455 8999999986344443322 11
Q ss_pred HHHHHHhCCCccCeEEEEEeccCCCCCChhcH---HHHhhhcCCchHH-H-----------------HHHhcCC--cEEE
Q 021534 127 HILESLFGKKISDYMIVVFTGGDELEDNDETL---EDYLGRECPKPLK-E-----------------ILQLCDN--RCVL 183 (311)
Q Consensus 127 ~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~~~~~~~-~-----------------~~~~~~~--~~~~ 183 (311)
........ ....|+++|+||+|.... ..+ .+++.. .. .+. . .+...+. .+++
T Consensus 161 ~~~~~~~~-~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~-~~-~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (262)
T 1yrb_A 161 FFALLIDL-RLGATTIPALNKVDLLSE--EEKERHRKYFED-ID-YLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY 235 (262)
T ss_dssp HHHHHHHH-HHTSCEEEEECCGGGCCH--HHHHHHHHHHHC-HH-HHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred HHHHHHhc-ccCCCeEEEEeccccccc--ccHHHHHHHHhC-hH-HHHHHHhccccccchhHhHHHHHHHHhcCcccceE
Confidence 11111010 112489999999998754 222 222211 00 000 1 1222222 3444
Q ss_pred ecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 184 FDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 184 f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+|+.++.|+++|+++|.+.+..
T Consensus 236 ------~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 236 ------LSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp ------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------EEecCcccHHHHHHHHHHHhcc
Confidence 7888999999999999988754
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.38 E-value=4.9e-14 Score=125.43 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc-----ccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA-----FMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~-----~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
..+|+++|.||+|||||+|+|+|... .......+++|.......+ +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 36899999999999999999998632 1122345667766655432 23489999999988653333333322
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+ .....++.++|+++.+..+.......+..+. + ...|+++++||.|.+..
T Consensus 236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS---G--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEec---C--CCceEEEEecCcccccc
Confidence 2222 1245689999999985221111211122222 1 23589999999998865
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.37 E-value=3.7e-14 Score=126.36 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-----ccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK-----KAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEI 94 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~-----~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~ 94 (311)
..+|+++|.||+|||||+|+|++. ... .....+++|....... -+..+.++||||+.+.......+....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~~~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVI-TTSYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCC-EEEECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccce-eecCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 368999999999999999999986 221 2234566777665543 234589999999987643233232222
Q ss_pred HHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 95 VKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 95 ~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
...+ .....+|+++|+++.+..+.......+..+. + ...|+++++||.|.+..
T Consensus 237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK---G--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred HHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc---C--CCceEEEEecCCccccc
Confidence 2222 1125689999999985221111211122222 1 23489999999998755
No 203
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.31 E-value=3.4e-11 Score=106.57 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC--------ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF--------SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~l~ 127 (311)
|..+....+.+ ++..+.||||||- +.+...+..++.++++||||+|+++.- ...-...+.
T Consensus 188 T~Gi~~~~~~~-~~~~l~i~Dt~Gq-----------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 188 TKGIHEYDFEI-KNVPFKMVDVGGQ-----------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp CSSEEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred ccceEEEEeee-CCeEEEEEeccch-----------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH
Confidence 44455555666 6789999999994 336666778899999999999998410 111123344
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCC
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDEL 151 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~ 151 (311)
++...+... ...|+|+++||+|+.
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhh
Confidence 444444321 235999999999975
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=2.2e-11 Score=107.09 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHH-HHHHHHhCCCccCeEEEEEe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAI-HILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ilv~n 146 (311)
.+..+.||||||+..+. . .+ ...+|++++|+|++... +...+ ..+.+ .+.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~~---~~~~i~~~i~~-------~~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAGD---ELQGIKKGIFE-------LADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCcc---cHHHHHHHHhc-------cccEEEEE
Confidence 46789999999987631 1 11 25679999999976221 11100 01111 25677889
Q ss_pred ccCCCCCChhcHHHHhhhcCCchHHHHHHhc-------CCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 147 GGDELEDNDETLEDYLGRECPKPLKEILQLC-------DNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 147 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
|+|+.... ......... +...+... ..++++ +|+.++.|+++|++.|.++..
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~------~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 99976431 111111111 22222111 223343 788899999999999998764
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.29 E-value=5e-12 Score=104.49 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc-----ccccCCCCCcce--------eEEEEEE------------------Eee
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA-----FMSKAGSSGVTK--------TCEMQRT------------------MLK 67 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~-----~~~~~~~~~~T~--------~~~~~~~------------------~~~ 67 (311)
..++|+|+|.+|+|||||+|+|++... ...... ++.+. ......+ .+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD-VVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF- 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS-CCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC-CCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc-
Confidence 457999999999999999999986521 000011 11110 0000000 11
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEec
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
.+..+.+|||||..+.. . .+....+++++|+|+..... ... .... ..+ .|+++|+||
T Consensus 107 ~~~d~iiidt~G~~~~~---~-----------~~~~~~~~~i~vvd~~~~~~-~~~---~~~~-~~~----~~~iiv~NK 163 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP---V-----------DFDLGENYRVVMVSVTEGDD-VVE---KHPE-IFR----VADLIVINK 163 (221)
T ss_dssp TTCSEEEEEEEEBSSGG---G-----------GCCCSCSEEEEEEEGGGCTT-HHH---HCHH-HHH----TCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCCC---c-----------hhccccCcEEEEEeCCCcch-hhh---hhhh-hhh----cCCEEEEec
Confidence 34578899999852210 0 01124688999999874321 111 1111 121 489999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+|+.........+. ...+...+ .+++. +|+.++.|+.+++++|.+.+.
T Consensus 164 ~Dl~~~~~~~~~~~---------~~~~~~~~~~~~i~~------~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 164 VALAEAVGADVEKM---------KADAKLINPRAKIIE------MDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GGGHHHHTCCHHHH---------HHHHHHHCTTSEEEE------CBTTTTBTHHHHHHHHHHHHC
T ss_pred ccCCcchhhHHHHH---------HHHHHHhCCCCeEEE------eecCCCCCHHHHHHHHHHHHH
Confidence 99753210122222 22222222 34444 688889999999999987764
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.27 E-value=3e-11 Score=111.01 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=94.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCCCcce-----------eEEEEE-----------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSSGVTK-----------TCEMQR----------------- 63 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~~~T~-----------~~~~~~----------------- 63 (311)
.....|+|+|.+|+||||+++.|+ |..+......+..... .+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 7654322221100000 011111
Q ss_pred EEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE-E
Q 021534 64 TMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM-I 142 (311)
Q Consensus 64 ~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-i 142 (311)
+.+ .+..+.||||||.... ...+..++...... ..+|.+++|+|+..... .......+.+. .|+ +
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence 011 4568999999998752 23344444433221 26799999999984432 33334444432 254 8
Q ss_pred EEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcCCcE------------EEecCCchhhhhhHHH-HHHHHHHHHHH
Q 021534 143 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC------------VLFDNKTKDAAKRTEQ-VGKLLSLVNSV 208 (311)
Q Consensus 143 lv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~f~~~~~~sa~~~~~-i~~l~~~i~~~ 208 (311)
+|+||+|.....+..+. +....+.++ ..|......|+..+.+ +..|++++.+.
T Consensus 245 vVlNK~D~~~~~g~~l~-------------~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 245 VIVTKLDGHAKGGGALS-------------AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEEECTTSCCCCTHHHH-------------HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEEeCCccccchHHHHH-------------HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99999997744222222 112223332 2333334567777778 89999988765
No 207
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.24 E-value=6.7e-11 Score=104.33 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=82.1
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC--------ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF--------SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~--------~~~~~~~l~ 127 (311)
|+.+....+.+ ++..+.+|||+|-. .+...+..++.++|+||||+|+++.- ...-...+.
T Consensus 180 T~Gi~~~~~~~-~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 180 TTGIVETHFTF-KDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eeceEEEEEee-CCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 55555666666 78899999999943 35566778899999999999998421 111233445
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCCCCC--hhcHHHHhhhc----CCchHHHHHH----hc-----CCcEEEecCCchh
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRE----CPKPLKEILQ----LC-----DNRCVLFDNKTKD 190 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~----~~~~~~~~~~----~~-----~~~~~~f~~~~~~ 190 (311)
++...+... ...|++|++||+|+.... ...+..+...+ .......++. .. ...++++ .+
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----et 323 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FT 323 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----EC
T ss_pred HHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EE
Confidence 555555421 235999999999975220 00111110000 0001122222 11 1222222 26
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 021534 191 AAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 191 sa~~~~~i~~l~~~i~~~~~~ 211 (311)
||.++.|+.+++.++.+.+..
T Consensus 324 SA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 324 CATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred ECcCchhHHHHHHHHHHHHHH
Confidence 888899999999999876643
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=110.46 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeC----------------CceEEEEeCCC
Q 021534 16 PSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKA----------------GQVVNVIDTPG 79 (311)
Q Consensus 16 ~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~----------------~~~l~liDTPG 79 (311)
......+|+++|.||+|||||+|+|+|... .....+++|.......+.+.+ ...+.+|||||
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 344568999999999999999999999865 223345566655555554411 23599999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 80 LFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
+......... +...+..+++.+|++++|+|++
T Consensus 96 l~~~as~~~g----lg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHNGQG----LGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred cccccchhhH----HHHHHHHHHHhcCeEEEEEecC
Confidence 8763211111 2112233456789999999986
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.21 E-value=3e-10 Score=98.74 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=84.4
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC-------CCCChh-HHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR-------NRFSKE-EGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~-------~~~~~~-~~~~l 126 (311)
.|..+....+.. .+..+.+|||+| ++.++..+..++.+++++|||+|++ +.-..+ -...+
T Consensus 153 ~TiGi~~~~~~~-~~v~l~iwDtgG-----------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~ 220 (327)
T 3ohm_A 153 PTTGIIEYPFDL-QSVIFRMVDVGG-----------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK 220 (327)
T ss_dssp CCCSEEEEEEEE-TTEEEEEEEECC-----------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred ceeeEEEEEEEe-eceeeEEEEcCC-----------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH
Confidence 455566666777 788999999999 3557778888999999999999765 111111 12344
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCCCC--hhcHHHHhhhcCC--chH---HHH----HHh---c-CCcEEEecCCch
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRECP--KPL---KEI----LQL---C-DNRCVLFDNKTK 189 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~~~--~~~---~~~----~~~---~-~~~~~~f~~~~~ 189 (311)
.++...+... ...|+++++||+|+.... ...+..+...+.. ... ... +.. . ...++++.
T Consensus 221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~---- 296 (327)
T 3ohm_A 221 ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF---- 296 (327)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----
T ss_pred HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----
Confidence 5555555432 235999999999976320 0112222221110 011 111 111 1 12222222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 021534 190 DAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 190 ~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+||.+..+++.++..+.+.+-.
T Consensus 297 TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 297 TCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCHHHHHHHHHHHHHHHH
Confidence 5777889999999999877644
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.20 E-value=1.2e-10 Score=110.20 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=46.3
Q ss_pred ceEEEEeCCCCCCC--CCChHHHHHHHHHHHHhccCCc-cEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 70 QVVNVIDTPGLFDS--SADPEFVSKEIVKCIGMAKDGI-HAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 70 ~~l~liDTPG~~~~--~~~~~~~~~~~~~~~~~~~~~~-d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
..+.|+|.||+... ..-+......+...+..+.... ..++.+++.+..+. ....+..+...... ..++|+|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~--g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE--GDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS--CCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc--CCceEEEec
Confidence 46899999998763 3333444555666666655444 45555556542322 22345555554322 348999999
Q ss_pred ccCCCCC
Q 021534 147 GGDELED 153 (311)
Q Consensus 147 k~D~~~~ 153 (311)
|+|.+..
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9999865
No 211
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.17 E-value=3.1e-10 Score=99.05 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=59.0
Q ss_pred cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC-------C-CChhHHHHH
Q 021534 55 VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN-------R-FSKEEGAAI 126 (311)
Q Consensus 55 ~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~-------~-~~~~~~~~l 126 (311)
.|..+....+.+ .+..+.||||+| ++.++..+..++.+++++|||+|+++ . -...-...+
T Consensus 147 ~TiGi~~~~~~~-~~v~l~iwDtaG-----------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~ 214 (340)
T 4fid_A 147 KTTGIHEYDFVV-KDIPFHLIDVGG-----------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI 214 (340)
T ss_dssp CCCSCEEEEEES-SSCEEEEEECCS-----------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH
T ss_pred ceeeeEEEEEEe-eeeeeccccCCC-----------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH
Confidence 355556666666 788999999999 35678888899999999999999871 0 111112334
Q ss_pred HHHHHHhCCC--ccCeEEEEEeccCCCC
Q 021534 127 HILESLFGKK--ISDYMIVVFTGGDELE 152 (311)
Q Consensus 127 ~~l~~~~~~~--~~~~~ilv~nk~D~~~ 152 (311)
.++...+... ...|+++++||+|+..
T Consensus 215 ~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 215 AVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 4444444321 2359999999999763
No 212
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.15 E-value=4.3e-10 Score=99.17 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=47.2
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCC-------C-CChhHHHHHHHHHHHhCCC--ccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRN-------R-FSKEEGAAIHILESLFGKK--ISD 139 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~~~ 139 (311)
..+.||||+|-.. +...+..++++++++|||+|++. . -...-.....++...+... ...
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 5799999999543 55566778999999999999861 1 1111123344444444321 235
Q ss_pred eEEEEEeccCCC
Q 021534 140 YMIVVFTGGDEL 151 (311)
Q Consensus 140 ~~ilv~nk~D~~ 151 (311)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999975
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.15 E-value=7.3e-10 Score=99.40 Aligned_cols=168 Identities=19% Similarity=0.136 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCC---cceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHH
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSG---VTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK 96 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~---~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~ 96 (311)
...|+|+|++|||||||+|.|+|......+....+ .|.. .+.+.......++++|+||++.....-.++.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~---- 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLE---- 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHHHHHHH----
Confidence 46899999999999999999999543222222111 1111 11111112236899999998753222222222
Q ss_pred HHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCC--CC-----ChhcHHHHhhhcCCch
Q 021534 97 CIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDEL--ED-----NDETLEDYLGRECPKP 169 (311)
Q Consensus 97 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~--~~-----~~~~~~~~~~~~~~~~ 169 (311)
.+. +...+.+++ ++.+ +.......+...+.. .+ .|+++|+||.|.+ ++ +..........
T Consensus 143 ~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~----- 208 (413)
T 1tq4_A 143 KMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MK----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD----- 208 (413)
T ss_dssp HTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TT----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----
T ss_pred HcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cC----CCeEEEEecCcccccCcccccCCHHHHHHHHHH-----
Confidence 111 223355555 7776 455666666666654 22 5999999999965 10 00122222221
Q ss_pred HHHHH----HhcC---CcEEEecCCchhhhhhHHHHHHHHHHHHHHHHH
Q 021534 170 LKEIL----QLCD---NRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIVQ 211 (311)
Q Consensus 170 ~~~~~----~~~~---~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~~ 211 (311)
+..+. ...+ ..+++++++. ..+.++++|.+.|.+.+++
T Consensus 209 l~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 209 IRLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCcc
Confidence 33332 1222 3456644432 2335799999999988865
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.13 E-value=9e-11 Score=100.53 Aligned_cols=67 Identities=21% Similarity=0.367 Sum_probs=43.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHH
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEF 89 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~ 89 (311)
+..++|+++|.||+|||||+|+|+|.....++ ..+++|...+... .+..+.||||||+.++.....+
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVK----VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEE----eCCCEEEEECcCcCCCCCCCHH
Confidence 35589999999999999999999998754333 3456676664322 2557999999999987655443
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=1.6e-10 Score=102.92 Aligned_cols=96 Identities=16% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCC-----------------ceEEEEe
Q 021534 14 TSPSNGERNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAG-----------------QVVNVID 76 (311)
Q Consensus 14 ~~~~~~~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~l~liD 76 (311)
........+|+++|++|+|||||+|+|+|...... ...+++|.......+.+ .+ ..+.+||
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 33445568999999999999999999999764122 23455666665555555 43 3589999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECC
Q 021534 77 TPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIR 115 (311)
Q Consensus 77 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~ 115 (311)
|||+.......+.+...+. ..+..+|++++|+|+.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl----~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFL----SHVRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHH----HHHTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 9998764322222222232 2345789999999986
No 216
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.02 E-value=2.4e-09 Score=95.58 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=56.8
Q ss_pred ceeEEEEEEEeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCC---C-----ChhHHHHHH
Q 021534 56 TKTCEMQRTMLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNR---F-----SKEEGAAIH 127 (311)
Q Consensus 56 T~~~~~~~~~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~---~-----~~~~~~~l~ 127 (311)
|+.+....+.+ ++..+.||||+|-. .+...+..++.+++++|||+|+++- + ...-.....
T Consensus 204 TiGi~~~~~~~-~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~ 271 (402)
T 1azs_C 204 TSGIFETKFQV-DKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN 271 (402)
T ss_dssp CCSEEEEEEEE-TTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred eeeeEEEEeec-CCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH
Confidence 44455555666 67899999999943 3556677889999999999999840 0 111123444
Q ss_pred HHHHHhCCC--ccCeEEEEEeccCCC
Q 021534 128 ILESLFGKK--ISDYMIVVFTGGDEL 151 (311)
Q Consensus 128 ~l~~~~~~~--~~~~~ilv~nk~D~~ 151 (311)
++..++... ...|++||+||+|+.
T Consensus 272 ~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 272 LFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHhcccCCCCeEEEEEEChhhh
Confidence 555544321 235899999999975
No 217
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.98 E-value=4.1e-10 Score=93.20 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|+|+|.+|+|||||+++|++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999865
No 218
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.94 E-value=6.4e-10 Score=94.20 Aligned_cols=63 Identities=27% Similarity=0.443 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCCcceeEEEEEEEeeCCceEEEEeCCCCCCCCC-ChH
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSSGVTKTCEMQRTMLKAGQVVNVIDTPGLFDSSA-DPE 88 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~~~T~~~~~~~~~~~~~~~l~liDTPG~~~~~~-~~~ 88 (311)
.+|+++|.||+|||||+|+|+|.....++ ..+++|...+... .+..+.||||||+.+... .+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~ 163 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS----LENGVKILDTPGILYKNIFSED 163 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCCCSHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE----eCCCEEEEECCCcccCcCCCCh
Confidence 69999999999999999999998754332 3346666543222 356789999999998765 443
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.89 E-value=6e-08 Score=87.42 Aligned_cols=122 Identities=18% Similarity=0.150 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCC--C---------cceeEEEEEE-----------------
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSS--G---------VTKTCEMQRT----------------- 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~--~---------~T~~~~~~~~----------------- 64 (311)
+...|+++|.+|+||||+++.|. |..+......+. + ....+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987 444321111110 0 0000001100
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.. .+..+.||||||.... +.....++..... ...+|.+++|+|+... .........+.+.. ....+|
T Consensus 179 ~~-~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVI 245 (443)
T 3dm5_A 179 KS-KGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSII 245 (443)
T ss_dssp HH-TTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEE
T ss_pred Hh-CCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEE
Confidence 00 3467999999997652 3344444544332 2257999999998732 22333334444322 357899
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 246 lTKlD~~~~ 254 (443)
T 3dm5_A 246 VTKLDGSAK 254 (443)
T ss_dssp EECCSSCSS
T ss_pred EECCCCccc
Confidence 999997754
No 220
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.76 E-value=1.9e-08 Score=90.93 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC-----------------ccccccCCCCCcceeEEEEEE----EeeC--CceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK-----------------KAFMSKAGSSGVTKTCEMQRT----MLKA--GQVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~-----------------~~~~~~~~~~~~T~~~~~~~~----~~~~--~~~l~l 74 (311)
.+...|+|+|++++|||||+|.|+|. ..|..+.....+|..+-.... .... +..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 35578999999999999999999964 233332222334443322210 1101 247999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHH
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILES 131 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~ 131 (311)
+||||+++... +......+.... .--++++||-+. ..+...+...|..+.+
T Consensus 145 lDTeG~~~~~~-~~~~d~~ifal~---~lLSs~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 145 MDTQGTFDSQS-TLRDSATVFALS---TMISSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEECCCSSHH-HHHHHHHHHHHH---HHHCSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EcCCccccccc-chhhhHHHHHHH---HHHhhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 99999987532 111112222211 111356666553 3566667666666554
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.72 E-value=2.9e-08 Score=89.84 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCC----------------------CC-cceeE-EE--EEE-Ee
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK------KAFMSKAGS----------------------SG-VTKTC-EM--QRT-ML 66 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~----------------------~~-~T~~~-~~--~~~-~~ 66 (311)
...|+++|++|+||||+++.|.+. .+......+ .+ .+... .. ..+ .+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999763 111110000 00 11110 00 000 12
Q ss_pred eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCcc-CeEEEEE
Q 021534 67 KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKIS-DYMIVVF 145 (311)
Q Consensus 67 ~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ilv~ 145 (311)
.+..+.||||||.... +..+...+... .....+|.++||+|+.... .. +..+.. +.. .. ....+|+
T Consensus 179 -~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~~---~~~~~~-~~~-~~~~i~gvVl 245 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--QA---GIQAKA-FKE-AVGEIGSIIV 245 (432)
T ss_dssp -SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--GH---HHHHHH-HHT-TSCSCEEEEE
T ss_pred -hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--HH---HHHHHH-Hhh-cccCCeEEEE
Confidence 4567899999997642 33344444321 2234689999999987332 22 222322 221 11 2489999
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||+|....
T Consensus 246 nK~D~~~~ 253 (432)
T 2v3c_C 246 TKLDGSAK 253 (432)
T ss_dssp ECSSSCST
T ss_pred eCCCCccc
Confidence 99997643
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.67 E-value=2.5e-07 Score=83.37 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=70.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCccccccCCC---------------CCcceeEE-------------EEEE
Q 021534 19 GERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGS---------------SGVTKTCE-------------MQRT 64 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~---------------~~~T~~~~-------------~~~~ 64 (311)
+...|+++|++|+||||+++.|. |..+....... .+...... ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 43331111000 00000000 0000
Q ss_pred EeeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 65 MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 65 ~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
.. .+..+.||||||..... .+.....++....... .+|.+++|+|+... .........+.+.. .+..+|
T Consensus 176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVI 244 (433)
T 3kl4_A 176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVI 244 (433)
T ss_dssp TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEE
T ss_pred Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEE
Confidence 01 35678999999965410 2233444454433322 46899999998732 22334445555443 358899
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 245 lTKlD~~a~ 253 (433)
T 3kl4_A 245 ITKMDGTAK 253 (433)
T ss_dssp EECGGGCSC
T ss_pred Eeccccccc
Confidence 999997644
No 223
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.45 E-value=4.2e-06 Score=72.12 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=66.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC--Cc---------ceeEEEEEEE----------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FMSKAGSS--GV---------TKTCEMQRTM---------------- 65 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~~--~~---------T~~~~~~~~~---------------- 65 (311)
+.-.|+++|++||||||+++.|.|... ...+.... +. ...+.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999975321 11111000 00 0001110000
Q ss_pred eeCCceEEEEeCCCCCCCCCCh-HHHHHHHHHHHH-hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADP-EFVSKEIVKCIG-MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~-~~~~~~~~~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
...+..+.++||+|..+..... .++. .....+. .....++.+++++|+..+. .....+..+.+..+ ..++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs-~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i 252 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELK-KVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV 252 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHH-HHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHH-HHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence 0023356799999976532110 1121 1222222 2235688888899976332 22334444444333 4788
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
++||.|....
T Consensus 253 ivTh~d~~a~ 262 (304)
T 1rj9_A 253 IVTKLDGTAK 262 (304)
T ss_dssp EEECTTSSCC
T ss_pred EEECCccccc
Confidence 9999986533
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.42 E-value=4.4e-07 Score=79.11 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCC--CCc---------ceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA------FMSKAGS--SGV---------TKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~--~~~---------T~~~~~~~~~--------------- 65 (311)
.+.-.|+++|++||||||+++.|.|... ...+... .+. ...+.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3457899999999999999999976421 1000000 000 0000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEE
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVV 144 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 144 (311)
...+..+.++||+|...... ....++....... .+|-.++++|+... ......+..+.+..+ ..+++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 00234577899999865322 2233333222111 36889999997633 222333444443332 46889
Q ss_pred EeccCCCCC
Q 021534 145 FTGGDELED 153 (311)
Q Consensus 145 ~nk~D~~~~ 153 (311)
+||+|....
T Consensus 275 lTKlD~~a~ 283 (328)
T 3e70_C 275 LTKLDADAR 283 (328)
T ss_dssp EECGGGCSC
T ss_pred EeCcCCccc
Confidence 999997533
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.40 E-value=2.1e-06 Score=73.82 Aligned_cols=123 Identities=17% Similarity=0.137 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh------CCccccccCCCCCc-c------------eeEEEE---------------EEE
Q 021534 20 ERNLVLVGRTGNGKSATANSIL------GKKAFMSKAGSSGV-T------------KTCEMQ---------------RTM 65 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~------g~~~~~~~~~~~~~-T------------~~~~~~---------------~~~ 65 (311)
...|+++|++|+||||+++.|. |..+.......... + ..+... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999986 33332111111000 0 000000 001
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
. .+..+.||||||.... ...+.+..++..... ...+|.+++|+|+... .......+.+... .....+|+
T Consensus 178 ~-~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~~-----~~i~gvVl 246 (297)
T 1j8m_F 178 S-EKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQA-----SKIGTIII 246 (297)
T ss_dssp H-TTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHT-----CTTEEEEE
T ss_pred h-CCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHhh-----CCCCEEEE
Confidence 1 4557999999997651 122333333332211 2257999999998622 2223333333321 12378899
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||+|....
T Consensus 247 nk~D~~~~ 254 (297)
T 1j8m_F 247 TKMDGTAK 254 (297)
T ss_dssp ECGGGCTT
T ss_pred eCCCCCcc
Confidence 99996543
No 226
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.39 E-value=3.5e-06 Score=76.16 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------CCccccccCCCCCc-c----------eeEEEEE--------------E-
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL-------GKKAFMSKAGSSGV-T----------KTCEMQR--------------T- 64 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~-------g~~~~~~~~~~~~~-T----------~~~~~~~--------------~- 64 (311)
.+...|+++|.+|+||||++..|. |..+......+... . ..+.... +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999887 65543221111000 0 0000000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEE
Q 021534 65 MLK-AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIV 143 (311)
Q Consensus 65 ~~~-~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 143 (311)
... .+..+.||||||.... ...+..++.... ....+|.+++|+|+... .........+.... ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~--~~~~p~~vllVvda~~g--~~~~~~~~~f~~~l-----~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVH--ASINPVETLFVVDAMTG--QDAANTAKAFNEAL-----PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHH--HHSCCSEEEEEEETTBC--TTHHHHHHHHHHHS-----CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHH--HhhcCcceeEEeecchh--HHHHHHHHHHhccC-----CCeEE
Confidence 000 3567999999997642 222333333322 13367999999998733 22223333333211 12457
Q ss_pred EEeccCCCCC
Q 021534 144 VFTGGDELED 153 (311)
Q Consensus 144 v~nk~D~~~~ 153 (311)
|+||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 9999997543
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.38 E-value=3.6e-07 Score=83.19 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCCc-----------ceeEEEEEEE---------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSGV-----------TKTCEMQRTM--------------- 65 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~~-----------T~~~~~~~~~--------------- 65 (311)
...-.|+|+|.+|||||||++.|.|.. +...+...... -..+.+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345789999999999999999987632 11111110000 0001111000
Q ss_pred -eeCCceEEEEeCCCCCCCCCChHHHHHHHHHH---HHhc-cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 66 -LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKC---IGMA-KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 66 -~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
...+..+.||||+|.... ...+..++... +... ...++-+++|+|+..+ ......++.+.+..+ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 003456889999997642 23333333332 2211 1236889999997622 222334444554443 3
Q ss_pred EEEEEeccCCCC
Q 021534 141 MIVVFTGGDELE 152 (311)
Q Consensus 141 ~ilv~nk~D~~~ 152 (311)
..+|+||.|...
T Consensus 441 tgvIlTKLD~ta 452 (503)
T 2yhs_A 441 TGITLTKLDGTA 452 (503)
T ss_dssp SEEEEECGGGCS
T ss_pred CEEEEEcCCCcc
Confidence 678999999653
No 228
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.37 E-value=5.1e-06 Score=74.78 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------C----------CccccccCCCCCcceeEEEEEE----EeeCC--ceEEE
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL-------G----------KKAFMSKAGSSGVTKTCEMQRT----MLKAG--QVVNV 74 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~-------g----------~~~~~~~~~~~~~T~~~~~~~~----~~~~~--~~l~l 74 (311)
.+...|+|+|.+++|||+|+|.|+ | ...|..+.+..++|..+-.+.. ....+ ..+.|
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 355788899999999999999765 2 2345555555566666654421 11122 36999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHH-HHhccCCccEEEEEEECCCCCChhHHHHHHHHHHH---hCCC----ccCeEEEEEe
Q 021534 75 IDTPGLFDSSADPEFVSKEIVKC-IGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESL---FGKK----ISDYMIVVFT 146 (311)
Q Consensus 75 iDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~---~~~~----~~~~~ilv~n 146 (311)
+||.|++|...+... ...|... +.. ++.+||=... .+...+...|..+.++ ...+ ....++.++-
T Consensus 145 lDTEG~~d~~~~~~~-d~~ifaLa~LL----SS~~IyN~~~--~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvR 217 (457)
T 4ido_A 145 MDTQGTFDSQSTLRD-SATVFALSTMI----SSIQVYNLSQ--NVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR 217 (457)
T ss_dssp EEECCBTCTTCCHHH-HHHHHHHHHHH----CSEEEEEEES--SCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEE
T ss_pred EeccCCCCcccCccc-cHHHHHHHHHH----hhheeecccc--cCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEe
Confidence 999999987654322 2222221 112 2566666553 4556666666655543 2222 1224666665
Q ss_pred ccC
Q 021534 147 GGD 149 (311)
Q Consensus 147 k~D 149 (311)
-|-
T Consensus 218 Df~ 220 (457)
T 4ido_A 218 DWS 220 (457)
T ss_dssp TCC
T ss_pred cCC
Confidence 554
No 229
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.35 E-value=9.4e-07 Score=70.96 Aligned_cols=106 Identities=6% Similarity=-0.003 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC---ccCeEEEEEecc-CCCCCChhcHHHHhhhcCC
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECP 167 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~ 167 (311)
..++..|..|+.++|++|||+|++++-....+.-+..|..+...+ ...|++|+.||. |+... ....+.... ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~ 189 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH 189 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC
Confidence 457778888899999999999997442222344443444444332 235899999996 55433 333332222 10
Q ss_pred chHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 168 KPLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 168 ~~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..+ ...++. ..+||.++.|+.+-++|+.+.+.
T Consensus 190 --L~~l----~R~W~I----q~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 --LNLL----NHPWLV----QDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp --GGGG----CSCEEE----EEEETTTCTTHHHHHHHHTTTTT
T ss_pred --CcCC----CCCEEE----EEeECCCCcCHHHHHHHHHHHHH
Confidence 1221 233333 23688889999999999986553
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.26 E-value=1.5e-05 Score=68.65 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCCC-c----------ceeEEEEEE----------------E
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK------AFMSKAGSSG-V----------TKTCEMQRT----------------M 65 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~------~~~~~~~~~~-~----------T~~~~~~~~----------------~ 65 (311)
....|+++|++|+||||++..|.+.- +......... . ...+..... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44689999999999999999886531 1100000000 0 000000000 0
Q ss_pred eeCCceEEEEeCCCCCCCCCChHHHHHHHHHHH---Hhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeE
Q 021534 66 LKAGQVVNVIDTPGLFDSSADPEFVSKEIVKCI---GMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYM 141 (311)
Q Consensus 66 ~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~---~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 141 (311)
...+..+.|+||||.. .....+.+++.... ...+ ..+|.+++|+|+..+ .........+.+.. ...
T Consensus 183 ~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVT 252 (306)
T ss_dssp HHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCC
T ss_pred HhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CCC
Confidence 1134578999999953 23344444444332 2222 348999999998611 12222223333222 246
Q ss_pred EEEEeccCCCCC
Q 021534 142 IVVFTGGDELED 153 (311)
Q Consensus 142 ilv~nk~D~~~~ 153 (311)
-+|+||.|....
T Consensus 253 gvVlTk~D~~~~ 264 (306)
T 1vma_A 253 GIILTKLDGTAK 264 (306)
T ss_dssp EEEEECGGGCSC
T ss_pred EEEEeCCCCccc
Confidence 678899997544
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.26 E-value=2.8e-07 Score=79.39 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
...++|+|++|+|||||+|+|+|.....++.... .+|..... +.. . ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 4689999999999999999999876433332221 23332221 122 2 3479999998753
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.12 E-value=3.2e-05 Score=68.03 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCCCc-------c----eeEEEEEEEe---------------
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA------FMSKAGSSGV-------T----KTCEMQRTML--------------- 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~------~~~~~~~~~~-------T----~~~~~~~~~~--------------- 66 (311)
+.-.|+++|++||||||+++.|.|... ...+...... + ..+.+.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 456899999999999999999976421 1111110000 0 0011111000
Q ss_pred --eCCceEEEEeCCCCCCCCCChHHHHHHH---HHHHH-hccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCe
Q 021534 67 --KAGQVVNVIDTPGLFDSSADPEFVSKEI---VKCIG-MAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDY 140 (311)
Q Consensus 67 --~~~~~l~liDTPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 140 (311)
..+....++||.|..... +....++ ...+. .....++-+++|+|++..+... ..+..+.+..+ .
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g-----~ 305 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG-----I 305 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----C
T ss_pred HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcC-----C
Confidence 012346799999986532 2222222 22222 2235688889999955333222 22333443333 3
Q ss_pred EEEEEeccCCCCC
Q 021534 141 MIVVFTGGDELED 153 (311)
Q Consensus 141 ~ilv~nk~D~~~~ 153 (311)
.++++||.|....
T Consensus 306 t~iiiThlD~~~~ 318 (359)
T 2og2_A 306 TGLILTKLDGSAR 318 (359)
T ss_dssp CEEEEESCTTCSC
T ss_pred eEEEEecCccccc
Confidence 6788999986644
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.12 E-value=4.8e-06 Score=71.57 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=64.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc-------cccccCCCCCccee-----------EEEEE----------E-EeeCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK-------AFMSKAGSSGVTKT-----------CEMQR----------T-MLKAG 69 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~-------~~~~~~~~~~~T~~-----------~~~~~----------~-~~~~~ 69 (311)
....|+++|++|+||||++..|.+.- +......+...+.. +.... + .. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence 45689999999999999999886421 11011111000000 00000 0 11 34
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccC
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGD 149 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 149 (311)
..+.|+||||.... ......++...+. ...++.+++|+|+++.. .+ +..+.+.+. .....-+|+||.|
T Consensus 183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~~---~~~~~~~~~--~l~~~giVltk~D 250 (296)
T 2px0_A 183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--ED---MKHIVKRFS--SVPVNQYIFTKID 250 (296)
T ss_dssp SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--HH---HHHHTTTTS--SSCCCEEEEECTT
T ss_pred CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--HH---HHHHHHHHh--cCCCCEEEEeCCC
Confidence 57999999998752 2222233333221 12467889999987432 11 222222232 1234567789999
Q ss_pred CCCC
Q 021534 150 ELED 153 (311)
Q Consensus 150 ~~~~ 153 (311)
....
T Consensus 251 ~~~~ 254 (296)
T 2px0_A 251 ETTS 254 (296)
T ss_dssp TCSC
T ss_pred cccc
Confidence 6643
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.12 E-value=2.4e-05 Score=67.94 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=66.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCCc--------------ceeEEEE-E-------------
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSGV--------------TKTCEMQ-R------------- 63 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~~--------------T~~~~~~-~------------- 63 (311)
.+...|+|+|++|+||||++..|.+. .+.......... ...+.+. .
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 34578999999999999999887542 221111111000 0011111 0
Q ss_pred -E--EeeCCceEEEEeCCCCCCCCCChHHHHHHHHH---HHHhcc-CCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC
Q 021534 64 -T--MLKAGQVVNVIDTPGLFDSSADPEFVSKEIVK---CIGMAK-DGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK 136 (311)
Q Consensus 64 -~--~~~~~~~l~liDTPG~~~~~~~~~~~~~~~~~---~~~~~~-~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~ 136 (311)
+ ....+..+.||||||.... .+....++.. .+.... ..+|.+++|+++... ...+..++. +...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 0 0013457999999996541 2223333322 222122 347999999998722 223344444 3221
Q ss_pred ccCeEEEEEeccCCCCC
Q 021534 137 ISDYMIVVFTGGDELED 153 (311)
Q Consensus 137 ~~~~~ilv~nk~D~~~~ 153 (311)
....-+|+||.|....
T Consensus 254 -~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTSK 269 (320)
T ss_dssp -SCCCEEEEECGGGCSC
T ss_pred -CCCcEEEEeCCCCCCc
Confidence 2345688999996533
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.11 E-value=1e-05 Score=72.73 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCCc-c----------eeEEEEE--------------EE-e
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSGV-T----------KTCEMQR--------------TM-L 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~~-T----------~~~~~~~--------------~~-~ 66 (311)
+...|+++|++|+||||++..|.+. .+.......... . ..+..+. +. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999888542 211111110000 0 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.||||||.... +..+..++....... .+|.+++|+|+... .........+.... ....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 03457899999996643 233333333332221 57899999998622 22223333333222 2467789
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99996543
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.09 E-value=1.8e-06 Score=75.78 Aligned_cols=58 Identities=29% Similarity=0.536 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCC--C----cceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA-FMSKAGSS--G----VTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~-~~~~~~~~--~----~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
-.++|+|++|+|||||+|.|+|... ..++.... + +|....... + . ....++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~--v-~-q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYH--F-P-HGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEE--C-T-TSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEE--E-C-CCCEecCcccHHH
Confidence 4789999999999999999999764 33332211 1 222222222 1 2 2345899999544
No 237
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.09 E-value=3.2e-05 Score=66.55 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.++++|++||||||+++.|.|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.03 E-value=8e-06 Score=70.40 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=62.0
Q ss_pred ceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCC-ChhH-HHHHHHHHHHhCCCccCeEEEEEec
Q 021534 70 QVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRF-SKEE-GAAIHILESLFGKKISDYMIVVFTG 147 (311)
Q Consensus 70 ~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk 147 (311)
..+.+||| .... ......++.++|++|+|+|++++. +... ..++..+.. ...|+++|+||
T Consensus 63 ~~~~iwD~--qer~-----------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRK-----------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCS-----------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred CeEEEEEE--cccc-----------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence 47999999 2221 112234688999999999998553 3332 334444433 13599999999
Q ss_pred cCCCCCChhcHHHHhhhcCCchHHHHHHhcC--CcEEEecCCchhhhhhHHHHHHHHHHHH
Q 021534 148 GDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDAAKRTEQVGKLLSLVN 206 (311)
Q Consensus 148 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~sa~~~~~i~~l~~~i~ 206 (311)
+|+... ..+++ ...++..++ ..++. +||.++.|+++++..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~~------~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIVK------TSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEEE------CCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEEE------EECCCCcCHHHHHHHhc
Confidence 998754 33211 122222223 34444 78888888888887653
No 239
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.01 E-value=7.2e-06 Score=70.72 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCccccccCCCC----C--cceeEEEEEEEeeCCceEEEEeCCCCCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKAFMSKAGSS----G--VTKTCEMQRTMLKAGQVVNVIDTPGLFD 82 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~----~--~T~~~~~~~~~~~~~~~l~liDTPG~~~ 82 (311)
...++++|++|+|||||+|+|+ .....++.... | +|..... +.. . ..-.++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECcCcCc
Confidence 3578999999999999999999 54433332221 1 2222221 111 1 2346899999864
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.95 E-value=6.3e-06 Score=71.05 Aligned_cols=59 Identities=25% Similarity=0.262 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCC------CcceeEEEEEEEeeCCceEEEEeCCCCCCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKAFMSKAGSS------GVTKTCEMQRTMLKAGQVVNVIDTPGLFDS 83 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~~~~~~~~~------~~T~~~~~~~~~~~~~~~l~liDTPG~~~~ 83 (311)
..++++|++|+|||||+|.|.|.....++.... ..|..... +.. .....++||||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~--~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF--DFGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC--TTSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc--CCCCEEEECcCCCcc
Confidence 578999999999999999999976533332221 12222211 111 123468999997653
No 241
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.89 E-value=3.3e-05 Score=66.27 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC------ccccccCCCCC-cc----------eeEEEEE--------------EE-e
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK------KAFMSKAGSSG-VT----------KTCEMQR--------------TM-L 66 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~------~~~~~~~~~~~-~T----------~~~~~~~--------------~~-~ 66 (311)
....|+++|++|+||||++..|.+. .+......... .+ ....... +. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999888643 11111111000 00 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEE
Q 021534 67 -KAGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVF 145 (311)
Q Consensus 67 -~~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 145 (311)
..+..+.|+||||.... +.....++....... .+|.+++|+|+... .......+.+.... ...-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~~-----~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhcC-----CCCEEEE
Confidence 03457899999986542 233334444333322 46888999997621 22222223222211 2466889
Q ss_pred eccCCCCC
Q 021534 146 TGGDELED 153 (311)
Q Consensus 146 nk~D~~~~ 153 (311)
||.|....
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99996543
No 242
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.85 E-value=2.9e-05 Score=68.77 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHH
Q 021534 92 KEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171 (311)
Q Consensus 92 ~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~ 171 (311)
+.+.+.+..+.+..|++++|+|+++. +..+...+.+.++ .+|+++|+||+|+... ....+.+.. .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~--~~~~~~~~~----~l~ 123 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPK--SVKHDKVKH----WMR 123 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence 44666666667778999999999842 2334445566554 3699999999998765 211111111 123
Q ss_pred HHHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHH
Q 021534 172 EILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVI 209 (311)
Q Consensus 172 ~~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~ 209 (311)
......+. .++. +||.++.|+++|++.|.++.
T Consensus 124 ~~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 124 YSAKQLGLKPEDVFL------ISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHTTCCCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccEEE------EeCCCCcCHHHHHhhhhhhc
Confidence 33445554 3444 78889999999999998765
No 243
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.83 E-value=3.4e-05 Score=65.72 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHH
Q 021534 96 KCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ 175 (311)
Q Consensus 96 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (311)
..+...+..+|+|++|+|+..+.+..... +.++.+ .+|+++|+||+|+++. ...+. +...+.
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~----l~~~l~---~kp~ilVlNK~DL~~~--~~~~~---------~~~~~~ 76 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPM----IEDILK---NKPRIMLLNKADKADA--AVTQQ---------WKEHFE 76 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHH----HHHHCS---SSCEEEEEECGGGSCH--HHHHH---------HHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHH----HHHHHC---CCCEEEEEECcccCCH--HHHHH---------HHHHHH
Confidence 33444567789999999998666654322 223333 3699999999998864 33332 233333
Q ss_pred hcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 176 LCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 176 ~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
..+..++. .|+.++.|+.+|++.+.+.+.
T Consensus 77 ~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 NQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred hcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 33555555 466677888888887777654
No 244
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.73 E-value=2.7e-05 Score=69.00 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHH
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 172 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~ 172 (311)
.+.+.+..++..++++++|+|+++... .+...+.+.++ .+|+++|+||+|+++. ....+.+.. .+..
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~--~~~~~~~~~----~l~~ 126 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPR--SVKYPKLLR----WMRR 126 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCT--TCCHHHHHH----HHHH
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCC--ccCHHHHHH----HHHH
Confidence 355555555667799999999984432 12233444444 3699999999998865 221111111 1233
Q ss_pred HHHhcCC---cEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 173 ILQLCDN---RCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 173 ~~~~~~~---~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
.+...|. .++. +||.++.|+++|++.|.++..
T Consensus 127 ~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 127 MAEELGLCPVDVCL------VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHTTTCCCSEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEEE------EECCCCCCHHHHHHHHHhhcc
Confidence 4455555 3444 788899999999999987663
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.63 E-value=0.00013 Score=62.83 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=50.0
Q ss_pred ccCCccEEEEEEECCCC-CChhH-HHHHHHHHHHhCCCccCeEEEEEeccCCCCCChhcHHHHhhhcCCchHHHHHHhcC
Q 021534 101 AKDGIHAVLLVFSIRNR-FSKEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD 178 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (311)
++.++|++++|+|++++ ++... ..++..+.. ...|+++|+||+|+.++ ..+.. ... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~--~~v~~-~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNE--EEKKE-LER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCH--HHHHH-HHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCc--cccHH-HHH-----HHHHHHHCC
Confidence 57889999999999855 34442 233433333 23589999999998754 32110 111 233334445
Q ss_pred CcEEEecCCchhhhhhHHHHHHHHHH
Q 021534 179 NRCVLFDNKTKDAAKRTEQVGKLLSL 204 (311)
Q Consensus 179 ~~~~~f~~~~~~sa~~~~~i~~l~~~ 204 (311)
..++. +||.++.|+++|++.
T Consensus 143 ~~~~~------~SA~~g~gi~~L~~~ 162 (302)
T 2yv5_A 143 YDVLK------VSAKTGEGIDELVDY 162 (302)
T ss_dssp CEEEE------CCTTTCTTHHHHHHH
T ss_pred CeEEE------EECCCCCCHHHHHhh
Confidence 55554 556666666666653
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=5.8e-06 Score=66.39 Aligned_cols=26 Identities=38% Similarity=0.778 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34678999999999999999998653
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.54 E-value=0.001 Score=53.38 Aligned_cols=69 Identities=7% Similarity=-0.016 Sum_probs=42.4
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEecc
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGG 148 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 148 (311)
...+.|||||+..+ ......+. .+|.+|+++..+ ........+++.+..........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998553 11222222 359999999887 44333456666666543212223679999999
Q ss_pred CCC
Q 021534 149 DEL 151 (311)
Q Consensus 149 D~~ 151 (311)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 248
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.46 E-value=3.5e-05 Score=64.96 Aligned_cols=105 Identities=6% Similarity=0.004 Sum_probs=60.7
Q ss_pred HHHHHHHhccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCC---ccCeEEEEEecc-CCCCCChhcHHHHhhhcCCc
Q 021534 93 EIVKCIGMAKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECPK 168 (311)
Q Consensus 93 ~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~ 168 (311)
.++..|..++.++|++|||+|++++-......-+..|..+...+ ...|++|+.||. |.... ....+.... ..
T Consensus 199 ~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~-L~- 274 (312)
T 3l2o_B 199 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH- 274 (312)
T ss_dssp CCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHH-cC-
Confidence 35667777888899999999997433222333233222222211 124899999974 66544 333332222 10
Q ss_pred hHHHHHHhcCCcEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Q 021534 169 PLKEILQLCDNRCVLFDNKTKDAAKRTEQVGKLLSLVNSVIV 210 (311)
Q Consensus 169 ~~~~~~~~~~~~~~~f~~~~~~sa~~~~~i~~l~~~i~~~~~ 210 (311)
+..+ ...++. ..+||.++.|+.+-++|+.+.+.
T Consensus 275 -L~~l----~r~W~I----q~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 -LNLL----NHPWLV----QDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp -GGGG----CSCEEE----EEEETTTCTTHHHHHHHHHHHSC
T ss_pred -CccC----CCcEEE----EecccCCCcCHHHHHHHHHHHHH
Confidence 1221 223333 23678899999999999987663
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.44 E-value=5.5e-05 Score=59.81 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
+++++|++|+|||||++.|.|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 250
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.42 E-value=5.3e-05 Score=60.99 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|+|++|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999874
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=9e-05 Score=58.62 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999874
No 252
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.29 E-value=0.00011 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|||||||++.|.|..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998853
No 253
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.28 E-value=0.00015 Score=59.94 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998653
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00014 Score=59.73 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 255
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0019 Score=58.23 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999764
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.25 E-value=0.00014 Score=58.44 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.24 E-value=0.00019 Score=57.06 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999999886
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00012 Score=59.78 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.++|+|++|||||||++.|.|.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999884
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00014 Score=59.42 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|++|||||||++.|+|..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999998854
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.23 E-value=0.00014 Score=58.98 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.....|+|+|++|||||||++.|.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999998753
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.23 E-value=0.00012 Score=58.24 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.|+|+|++|||||||++.|+|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999998753
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.21 E-value=0.00018 Score=59.65 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999999643
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00016 Score=58.55 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+...|+|+|++|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999874
No 264
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.19 E-value=0.00019 Score=60.85 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999999864
No 265
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.19 E-value=0.00019 Score=60.53 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998643
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.18 E-value=0.00023 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999998653
No 267
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.18 E-value=0.00019 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999998643
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.0002 Score=60.09 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998653
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.16 E-value=0.00021 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999643
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.16 E-value=0.0002 Score=56.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|||||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 5789999999999999998664
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.16 E-value=0.00033 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|.|-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999998643
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.15 E-value=0.00022 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||++.|.|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998864
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.15 E-value=0.00025 Score=59.65 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999864
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.14 E-value=0.00026 Score=58.29 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|+|-..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4789999999999999999998643
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.13 E-value=0.00024 Score=59.37 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|||||||++.|.|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999995
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.13 E-value=0.00024 Score=59.28 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4689999999999999999998653
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.12 E-value=0.00028 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 578999999999999999999864
No 278
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.11 E-value=0.00029 Score=58.89 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh---CCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL---GKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~---g~~~ 45 (311)
.....|+|+|++||||||+++.|. |-..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 345789999999999999999998 7543
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.11 E-value=0.00029 Score=58.49 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999998643
No 280
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0023 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 56899999999999999999764
No 281
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00041 Score=55.98 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.........|+|+|.+||||||+.+.|.+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3334445578999999999999999999875
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.10 E-value=0.00025 Score=59.67 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.++|+|++|||||||++.|+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4468999999999999999999874
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.09 E-value=0.00031 Score=59.04 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|||||||++.|.|-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999999864
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.08 E-value=0.00034 Score=59.05 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|||||||++.|+|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999996
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.07 E-value=0.00038 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999998643
No 286
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.07 E-value=0.00024 Score=59.81 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.0
Q ss_pred ccCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 101 AKDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 101 ~~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
.+..+|+|+.|+|+..+.+..... +..+ .+|.++|+||+|+++.
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~-l~ll--------~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYG-VDFS--------RKETIILLNKVDIADE 61 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTT-SCCT--------TSEEEEEEECGGGSCH
T ss_pred HHhhCCEEEEEeeCCCCCcCcChH-HHhc--------CCCcEEEEECccCCCH
Confidence 356779999999998665543211 1111 3699999999998865
No 287
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.07 E-value=0.00033 Score=59.47 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4789999999999999999998653
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00035 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|+|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999998864
No 289
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0031 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 56999999999999999999864
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.06 E-value=0.00034 Score=59.12 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++|+|++|||||||++.|.|-..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999999643
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00031 Score=56.92 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...|+|+|++||||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998764
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.05 E-value=0.0001 Score=58.64 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 293
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.00035 Score=58.41 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998653
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.00029 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.578 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|+|++||||||+++.|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999865
No 295
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.04 E-value=0.00019 Score=58.19 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++++|++|||||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999987
No 296
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.03 E-value=0.00037 Score=58.73 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5789999999999999999998643
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.01 E-value=0.0003 Score=60.33 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.++|+|++|+|||||++.|+|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 367899999999999999999863
No 298
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00038 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++++|++|||||||++.|.|-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999865
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0033 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.98 E-value=0.00037 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 579999999999999999998754
No 301
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.98 E-value=0.00031 Score=60.42 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++|+|++|||||||++.|+|-..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 45789999999999999999998643
No 302
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.97 E-value=0.0058 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|.|+||+|||+++.++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.00031 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.|+++|++|+|||||++.|.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.95 E-value=0.00041 Score=59.89 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.....|+|+|++|||||||++.|.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455789999999999999999998743
No 305
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.00052 Score=58.59 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5789999999999999999998653
No 306
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.88 E-value=0.00049 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4689999999999999999999653
No 307
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.88 E-value=0.0014 Score=56.22 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=38.7
Q ss_pred CceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCe-EEEEEe
Q 021534 69 GQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDY-MIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ilv~n 146 (311)
+..+.|||||+...... +...+..+|.+|+|++.+ ..+-.. ..+++.+.... .....+ +-+|+|
T Consensus 156 ~yD~ViiD~p~~~~~~~------------~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG------------FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKS-KNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCGG------------GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTT-TTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchHH------------HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhh-hcCCCceEEEEEe
Confidence 45789999987543110 112245679999999876 332222 44555555432 222234 348999
Q ss_pred ccC
Q 021534 147 GGD 149 (311)
Q Consensus 147 k~D 149 (311)
+++
T Consensus 222 ~~~ 224 (307)
T 3end_A 222 RSR 224 (307)
T ss_dssp SCS
T ss_pred cCC
Confidence 998
No 308
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.88 E-value=0.00062 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSIL---GKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~---g~~~ 45 (311)
...|+|+|++||||||+++.|. |-..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3689999999999999999998 7643
No 309
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.87 E-value=0.00032 Score=57.68 Aligned_cols=25 Identities=40% Similarity=0.524 Sum_probs=16.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-CCc
Q 021534 20 ERNLVLVGRTGNGKSATANSIL-GKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~-g~~ 44 (311)
...|+|+|++||||||+++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578999999999999999999 753
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.86 E-value=0.00044 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.86 E-value=0.00047 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999975
No 312
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.86 E-value=0.00051 Score=60.39 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-.|+|+|++|||||||+++|+|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999874
No 313
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.85 E-value=0.00058 Score=59.90 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999999999999999999653
No 314
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.84 E-value=0.002 Score=55.34 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=31.9
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHHHHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHILESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++|.+++|+|+..+..... .+-+.+..... ...|.++|+||+|+.++
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~--~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA--NDIQPIICITKMDLIED 132 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT--TTCEEEEEEECGGGCCC
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEECCccCch
Confidence 567899999999984444333 22233322111 23588999999998866
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.82 E-value=0.00072 Score=59.39 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|.|-..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 5689999999999999999998653
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.82 E-value=0.00063 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999753
No 317
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0021 Score=57.82 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.-|++.|+||+|||+|..++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.81 E-value=0.00026 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|||||||++.|.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.80 E-value=0.00058 Score=60.26 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.|+|+|++|+|||||+|.|+|..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999864
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.80 E-value=0.00065 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+...|+|+|++|||||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998763
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.79 E-value=0.00067 Score=54.46 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|++||||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998764
No 322
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.78 E-value=0.0008 Score=59.12 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 5689999999999999999999643
No 323
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.78 E-value=0.0012 Score=53.51 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=40.2
Q ss_pred CceEEEEeCCCC-CCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChh-HHHHHHHHHHHhCCCccCeEEEEEe
Q 021534 69 GQVVNVIDTPGL-FDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKE-EGAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 69 ~~~l~liDTPG~-~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
...+.|||||+. .+. ..... +..+|.+|+++..+ ..... ...+++.+.... ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~----~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKLG----NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC----SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc----CCCEEEEEE
Confidence 457899999986 431 11122 23469999998876 32222 234555555432 236889999
Q ss_pred ccCCCC
Q 021534 147 GGDELE 152 (311)
Q Consensus 147 k~D~~~ 152 (311)
++|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998654
No 324
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.78 E-value=0.00082 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 5689999999999999999999653
No 325
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.00082 Score=59.11 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 5689999999999999999999653
No 326
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.0007 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4689999999999999999999653
No 327
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.006 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-|++.|+||+|||+|..++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 367999999999999999999764
No 328
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.76 E-value=0.0008 Score=58.17 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....+.|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345588999999999999999988653
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.76 E-value=0.00066 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 67899999999999999999864
No 330
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.75 E-value=0.0005 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|+|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
No 331
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.73 E-value=0.00094 Score=58.95 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5789999999999999999999653
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.72 E-value=0.0011 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+|+|+|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999988643
No 333
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.71 E-value=0.00085 Score=57.81 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 334
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.71 E-value=0.00073 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.|+|+|++|||||||++.|+|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4467999999999999999999874
No 335
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0069 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|+||+|||+|++++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999653
No 336
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.68 E-value=0.00096 Score=51.82 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 021534 21 RNLVLVGRTGNGKSATANSI 40 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l 40 (311)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0012 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|+|.+||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998853
No 338
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.68 E-value=0.00071 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|||||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 339
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.67 E-value=0.00088 Score=59.55 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++++|++|||||||++.|.|-.
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3578999999999999999999864
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.67 E-value=0.00082 Score=54.87 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 341
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.66 E-value=0.00079 Score=58.93 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4789999999999999999999653
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.66 E-value=0.00086 Score=55.12 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|.|.+||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999998764
No 343
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.66 E-value=0.00077 Score=62.21 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|++|||||||+|+|+|.-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999753
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.64 E-value=0.0011 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|+|.+|||||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999875
No 346
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.64 E-value=0.0009 Score=60.10 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+.-.|+|+|++|||||||+++|+|.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999874
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.62 E-value=0.0017 Score=52.04 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 15 SPSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 15 ~~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+......|+|+|.+||||||+.+.|..
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444567899999999999999998863
No 348
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.62 E-value=0.00074 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++++|++|+|||||++++.+.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998753
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.62 E-value=0.00074 Score=59.66 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-+++|+|++|||||||++.|.|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998854
No 350
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.61 E-value=0.0013 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
......|+|+|++|||||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999999998764
No 351
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.59 E-value=0.00092 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 352
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0017 Score=60.31 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|...
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 5679999999999999999999653
No 353
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.58 E-value=0.0014 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999875
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.0012 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-.++|+|++|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3578999999999999999887
No 355
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.57 E-value=0.00075 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++++|++|||||||++.|.|-..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5689999999999999999999653
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.57 E-value=0.0015 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 357
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.54 E-value=0.0013 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 358
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.52 E-value=0.7 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|+|+||+|||+++..+.+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 359
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.52 E-value=0.0016 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+++|++||||||+.+.|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 360
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.00088 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....++++|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998743
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.42 E-value=0.0022 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.41 E-value=0.002 Score=50.12 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+.|+|+|.+|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998763
No 363
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.41 E-value=0.0013 Score=51.71 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
..+|+|++|+|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999854
No 364
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0016 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 365
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.39 E-value=0.0021 Score=59.77 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.+.-.++++|++|||||||++.|.|...
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999999653
No 366
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.39 E-value=0.0021 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 367
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.38 E-value=0.002 Score=50.83 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 368
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.37 E-value=0.0022 Score=50.81 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999853
No 369
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.37 E-value=0.026 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|++.|++|+|||++..++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999998753
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.35 E-value=0.0014 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 371
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.34 E-value=0.0031 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998653
No 372
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.33 E-value=0.0022 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 373
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.32 E-value=0.0022 Score=51.21 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999864
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.32 E-value=0.0013 Score=56.94 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|.+|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999753
No 375
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.32 E-value=0.0021 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.32 E-value=0.0025 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999998754
No 377
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.32 E-value=0.0024 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.....|+|+|+|||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.30 E-value=0.0025 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998853
No 379
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0016 Score=59.32 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
...++|+|++|||||||++.|+|-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4679999999999999999998864
No 380
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.29 E-value=0.0024 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 381
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0026 Score=59.92 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|...
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 446789999999999999999999654
No 382
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.27 E-value=0.0025 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+++|.+||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.25 E-value=0.018 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 384
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.24 E-value=0.0019 Score=58.92 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|||||||++.|.|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999998743
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.23 E-value=0.0028 Score=59.70 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.+.-.++|+|++|+|||||++.|.|...
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3446789999999999999999999653
No 386
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.22 E-value=0.0031 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 387
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.20 E-value=0.003 Score=59.42 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC
Confidence 35789999999999999999998643
No 388
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.20 E-value=0.002 Score=53.64 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 389
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.19 E-value=0.014 Score=48.05 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=38.1
Q ss_pred CCceEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCccEEEEEEECCCCCChhH-HHHHHHHHHHhCCCccCeEEEEEe
Q 021534 68 AGQVVNVIDTPGLFDSSADPEFVSKEIVKCIGMAKDGIHAVLLVFSIRNRFSKEE-GAAIHILESLFGKKISDYMIVVFT 146 (311)
Q Consensus 68 ~~~~l~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~n 146 (311)
....+.|||||+..+.. .. ..+..+|.+|+|++.+ ..+... ..+++.+.. .+. ..+.+|+|
T Consensus 130 ~~yD~viiD~pp~~~~~---------~~----~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~-~~~---~~~~~v~N 191 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL---------TR----GTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGD-LGI---KKVRYVIN 191 (254)
T ss_dssp TCCSEEEEEECTTCTTC---------CH----HHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHH-HTC---SCEEEEEE
T ss_pred CCCCEEEEeCCCcccHH---------HH----HHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHH-cCC---ccEEEEEe
Confidence 45578999998754321 11 1134579999999876 333333 233333333 332 46889999
Q ss_pred ccC
Q 021534 147 GGD 149 (311)
Q Consensus 147 k~D 149 (311)
+.+
T Consensus 192 ~~~ 194 (254)
T 3kjh_A 192 KVR 194 (254)
T ss_dssp EEC
T ss_pred CCC
Confidence 988
No 390
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0031 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999875
No 391
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.19 E-value=0.014 Score=51.38 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
-.+|+|++|+|||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999986
No 392
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.18 E-value=0.0032 Score=59.20 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35789999999999999999998643
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.17 E-value=0.0033 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999998753
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0028 Score=51.25 Aligned_cols=20 Identities=45% Similarity=0.792 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
+|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 395
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0034 Score=58.26 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|||||||++.|+|-..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999999654
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.15 E-value=0.0034 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|+|+|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 397
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.055 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|..++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999999999753
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0037 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 399
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.10 E-value=0.0024 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-+++++|++|+|||||++.|.|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999864
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.10 E-value=0.0045 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999885
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.09 E-value=0.0032 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998853
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.09 E-value=0.0032 Score=50.92 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.09 E-value=0.0039 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....+|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
No 404
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.08 E-value=0.004 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999754
No 405
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.08 E-value=0.0052 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..++|.|++|+||||++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 406
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.07 E-value=0.03 Score=48.96 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=27.9
Q ss_pred cCCccEEEEEEECCCCCChhHHHHHHHH--HHHhCCCccCeEEEEEeccCCCCC
Q 021534 102 KDGIHAVLLVFSIRNRFSKEEGAAIHIL--ESLFGKKISDYMIVVFTGGDELED 153 (311)
Q Consensus 102 ~~~~d~il~v~d~~~~~~~~~~~~l~~l--~~~~~~~~~~~~ilv~nk~D~~~~ 153 (311)
..++|.+++|+...+.++... +-+.| ....+ .|.++|+||+|+.++
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~--i~r~L~~a~~~~----~~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNI--IDRYLVGCETLQ----VEPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHH--HHHHHHHHHHHT----CEEEEEEECGGGCCH
T ss_pred HhcCCEEEEEEeCCCCCCHHH--HHHHHHHHHhcC----CCEEEEEECccCCCc
Confidence 467899998765543333332 21222 12233 478999999998865
No 407
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.05 E-value=0.0031 Score=59.49 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|+|-..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 346889999999999999999998653
No 408
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.04 E-value=0.0026 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|+|||||++.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999874
No 409
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.03 E-value=0.003 Score=59.59 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 35789999999999999999998643
No 410
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.03 E-value=0.0044 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+|+|+|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999853
No 411
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.03 E-value=0.0037 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999986
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.02 E-value=0.0044 Score=50.21 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999864
No 413
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.02 E-value=0.0043 Score=58.46 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|.|...
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999999654
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.02 E-value=0.0048 Score=46.96 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 355889999999999999974
No 415
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.99 E-value=0.0036 Score=48.80 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 416
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.98 E-value=0.0026 Score=59.70 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
+.-.++++|++|+|||||++.|.|-..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 345789999999999999999998653
No 417
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.96 E-value=0.0028 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|+|||||++.|.+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 418
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.96 E-value=0.003 Score=53.40 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 021534 23 LVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 23 I~v~G~~g~GKSSlin~l~g~ 43 (311)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999864
No 419
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.96 E-value=0.0045 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998854
No 420
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0018 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 421
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.94 E-value=0.0043 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.93 E-value=0.0044 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
No 423
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.92 E-value=0.009 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 021534 19 GERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
....|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 424
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.91 E-value=0.0029 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..++++|++|+|||||++.+.+.-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998753
No 425
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.91 E-value=0.0034 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 17 SNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 17 ~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
......|+++|.|||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999999864
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.90 E-value=0.0032 Score=56.87 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-+++++|++|+|||||++.|.|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998854
No 427
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.90 E-value=0.0036 Score=58.91 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|+|||||++.|.|-..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999999999999999998653
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.86 E-value=0.0042 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+++|++|+|||||++.|.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35889999999999999999986
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.86 E-value=0.042 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+++|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999874
No 430
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.85 E-value=0.0049 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.85 E-value=0.0047 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 432
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.85 E-value=0.0049 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 433
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.85 E-value=0.0054 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 434
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.84 E-value=0.0052 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|+|++|||||||.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 435
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.057 Score=43.04 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++|.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 436
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.82 E-value=0.0053 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
...|++.|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999986
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.0058 Score=57.54 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 22 NLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.++|+|++|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999999754
No 438
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.80 E-value=0.00065 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 021534 22 NLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.++|+|++|||||||+++|.|..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999998754
No 439
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.80 E-value=0.0046 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 459999999999999998874
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.80 E-value=0.0048 Score=47.82 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 441
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.79 E-value=0.0041 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
..+|+|+|.+||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 442
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.78 E-value=0.0064 Score=47.55 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 443
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.75 E-value=0.0041 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
..|+|.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 444
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.73 E-value=0.036 Score=49.16 Aligned_cols=24 Identities=38% Similarity=0.673 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998643
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.73 E-value=0.006 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.71 E-value=0.0089 Score=48.55 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|+|+|||||+|....|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4456778999999999999888644
No 447
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.69 E-value=0.0071 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998653
No 448
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.67 E-value=0.0058 Score=49.34 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.++++|++|+|||||+..+++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 449
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.65 E-value=0.0049 Score=50.63 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-.++|+|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999874
No 450
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.62 E-value=0.0084 Score=49.14 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998653
No 451
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.62 E-value=0.0071 Score=46.74 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 021534 20 ERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.-+|+|.|.+||||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999884
No 452
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.61 E-value=0.0064 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.718 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+++|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999764
No 453
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.61 E-value=0.024 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999998653
No 454
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.61 E-value=0.012 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|.|++|+|||+|..++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999998754
No 455
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.60 E-value=0.0044 Score=61.22 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
-.++|+|++|+|||||++.|+|...
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999653
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.59 E-value=0.0072 Score=48.69 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
+|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888654
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.56 E-value=0.0084 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh
Q 021534 18 NGERNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~ 41 (311)
.....|+|+|.+||||||+.+.|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999998885
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.54 E-value=0.0074 Score=48.90 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
.+|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999884
No 459
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.53 E-value=0.0044 Score=63.79 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-+|++||+||||||||++.|+|-.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 4589999999999999999999854
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.50 E-value=0.0093 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.....|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 461
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.42 E-value=0.05 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..-|++.|+||+|||+|.+++.+..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998653
No 462
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.42 E-value=0.041 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
-|+++|+||+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 463
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.38 E-value=0.24 Score=42.40 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
-+++.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999864
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.35 E-value=0.01 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|++.|++|+|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998754
No 465
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.35 E-value=0.0096 Score=61.31 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|+|...
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CcEEEEEecCCCcHHHHHHHhccccc
Confidence 35899999999999999999999754
No 466
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.33 E-value=0.025 Score=49.50 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.++|.|++|+||||++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 467
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.33 E-value=0.0082 Score=46.76 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988654
No 468
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.31 E-value=0.011 Score=48.30 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
....|+|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.31 E-value=0.0087 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
-.+++.|+||+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999888754
No 470
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.29 E-value=0.012 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 456889999999999999873
No 471
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.28 E-value=0.015 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.+...++|+|++|+|||++..+|.+.
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHH
Confidence 34468999999999999999998764
No 472
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.26 E-value=0.003 Score=56.61 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998873
No 473
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.20 E-value=0.0078 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.-.++|+|++|+|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.19 E-value=0.012 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.18 E-value=0.015 Score=49.71 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...|+|+|+||||||||...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 35789999999999999999864
No 476
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.17 E-value=0.0083 Score=59.26 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
-.++|+|++|+|||||++.|.|..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999643
No 477
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.16 E-value=0.013 Score=44.12 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|++|+|||++..+|...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998653
No 478
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.11 E-value=0.015 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 18 NGERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 18 ~~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.....|+|.|+||+|||++..++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999877643
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.08 E-value=0.0067 Score=56.40 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 19 GERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
....|+|+|.+|||||||++.|.+.-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998753
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.06 E-value=0.0072 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 021534 20 ERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.+.|+|.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998753
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.06 E-value=0.017 Score=50.03 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 21 RNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
..|+|+|+||+|||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999997653
No 482
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.06 E-value=0.012 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCcc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKKA 45 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~~ 45 (311)
.-.++++|++|||||||++.|+|...
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35789999999999999999998653
No 483
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.05 E-value=0.015 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|+||||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 56899999999999999998644
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.01 E-value=0.016 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998754
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.97 E-value=0.018 Score=46.90 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 021534 13 PTSPSNGERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 13 ~~~~~~~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
.++.......|+|.|.+||||||+++.|..
T Consensus 14 ~~~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 14 AQTQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp -----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455568899999999999999998854
No 486
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.97 E-value=0.014 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 021534 22 NLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g 42 (311)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998854
No 487
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.95 E-value=0.013 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...|++.|+||+|||+|++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 357899999999999999999754
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.92 E-value=0.015 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..|+|+|+||||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999988864
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.86 E-value=0.0083 Score=57.38 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
-.++|+|++|||||||+|.++
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 467999999999999998754
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.86 E-value=0.017 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 021534 21 RNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..|+|+|+||||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988643
No 491
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.83 E-value=0.015 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 19 GERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...+++|+|++|+|||||++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998754
No 492
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.012 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 021534 22 NLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~g~ 43 (311)
.++++|++|+||||+++.|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998763
No 493
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.80 E-value=0.018 Score=49.00 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
..-|++.|+||+|||+|..++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356778899999999999998753
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.80 E-value=0.011 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCc
Q 021534 20 ERNLVLVGRTGNGKSATANSILGKK 44 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~~ 44 (311)
.-.++|+|++|+|||||++.+++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998753
No 495
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.79 E-value=0.019 Score=50.00 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 021534 21 RNLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~ 41 (311)
...+|+|++|+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 344789999999999999974
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.70 E-value=0.015 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
....|+|.|.+||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 497
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.69 E-value=0.016 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 021534 21 RNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 21 ~~I~v~G~~g~GKSSlin~l~g 42 (311)
..++|+|++|+|||||+++|.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999875
No 498
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.67 E-value=0.015 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 021534 19 GERNLVLVGRTGNGKSATANSILG 42 (311)
Q Consensus 19 ~~~~I~v~G~~g~GKSSlin~l~g 42 (311)
...+++|+|.||+|||+++|+|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 499
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.66 E-value=0.012 Score=50.85 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021534 22 NLVLVGRTGNGKSATANSIL 41 (311)
Q Consensus 22 ~I~v~G~~g~GKSSlin~l~ 41 (311)
..+|+|++|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999986
No 500
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.66 E-value=0.016 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 021534 20 ERNLVLVGRTGNGKSATANSILGK 43 (311)
Q Consensus 20 ~~~I~v~G~~g~GKSSlin~l~g~ 43 (311)
...++|.|++|+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998764
Done!