BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021535
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K5N|A Chain A, Hla-B2709 Bound To Nona-Peptide M9
pdb|1JGD|A Chain A, Hla-B2709 Bound To Deca-Peptide S10r
pdb|1OF2|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXW|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2) Of Epstein-Barr Virus
pdb|1W0W|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|3B3I|A Chain A, Citrullination-dependent Differential Presentation Of A
Self-peptide By Hla-b27 Subtypes
pdb|3BP7|A Chain A, The High Resolution Crystal Structure Of Hla-B2709 In
Complex With A Cathepsin A Signal Sequence Peptide,
Pcata
pdb|3CZF|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3HCV|A Chain A, Crystal Structure Of Hla-B2709 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
Length = 276
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 171 MSSDSASPTIEVYVAGTFSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTP 230
SD+ASP E + P + Q+ K QT R L ++ Y E+ T
Sbjct: 36 FDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHT- 94
Query: 231 SELPLQVLDFSDHKPESE----YYNHLYSGTDFLEGEDEELSWFNA 272
LQ + D P+ Y+ H Y G D++ ++ SW A
Sbjct: 95 ----LQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALNEDLSSWTAA 136
>pdb|3D18|A Chain A, Crystal Structure Of Hla-B2709 Complexed With A Variant Of
The Latent Membrane Protein 2 Peptide (Lmp2(L)) Of
Epstein-Barr Virus
Length = 276
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 171 MSSDSASPTIEVYVAGTFSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTP 230
SD+ASP E + P + Q+ K QT R L ++ Y E+ T
Sbjct: 36 FDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHT- 94
Query: 231 SELPLQVLDFSDHKPESE----YYNHLYSGTDFLEGEDEELSWFNA 272
LQ + D P+ Y+ H Y G D++ ++ SW A
Sbjct: 95 ----LQNMYGCDVGPDGRLLRGYHQHAYDGKDYIALNEDLSSWTAA 136
>pdb|2BSR|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
pdb|2BSS|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-B2705
Length = 276
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 171 MSSDSASPTIEVYVAGTFSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTP 230
SD+ASP E + P + Q+ K QT R L ++ Y E+ T
Sbjct: 36 FDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHT- 94
Query: 231 SELPLQVLDFSDHKPESE----YYNHLYSGTDFLEGEDEELSWFNA 272
LQ + D P+ Y+ + Y G D++ ++ SW A
Sbjct: 95 ----LQNMYGCDVGPDGRLLRGYHQNAYDGKDYIALNEDLSSWTAA 136
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 259 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 317
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 318 EIYTHFTCATD 328
>pdb|1HSA|A Chain A, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1HSA|D Chain D, The Three-Dimensional Structure Of Hla-B27 At 2.1
Angstroms Resolution Suggests A General Mechanism For
Tight Peptide Binding To Mhc
pdb|1JGE|A Chain A, Hla-B2705 Bound To Nona-Peptide M9
pdb|1OGT|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Vasoactive Intestinal Peptide Type 1 Receptor (Vipr)
Peptide (Residues 400-408)
pdb|1UXS|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Latent
Membrane Protein 2 Peptide (Lmp2)of Epstein-Barr Virus
pdb|1W0V|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Self-Peptide Tis From Egf-Response Factor 1
pdb|2BST|A Chain A, Crystal Structures And Kir3dl1 Recognition Of Three
Immunodominant Viral Peptides Complexed To Hla-b2705
pdb|2A83|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Glucagon
Receptor (Gr) Peptide (Residues 412-420)
pdb|3B6S|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3BP4|A Chain A, The High Resolution Crystal Structure Of Hla-B2705 In
Complex With A Cathepsin A Signal Sequence Peptide Pcata
pdb|3DTX|A Chain A, Crystal Structure Of Hla-B2705 Complexed With The Double
Citrullinated Vasoactive Intestinal Peptide Type 1
Receptor (Vipr) Peptide (Residues 400-408)
pdb|3LV3|A Chain A, Crystal Structure Of Hla-B2705 Complexed With A Peptide
Derived From The Human Voltage-Dependent Calcium Channel
Alpha1 Subunit (Residues 513-521)
Length = 276
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 171 MSSDSASPTIEVYVAGTFSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTP 230
SD+ASP E + P + Q+ K QT R L ++ Y E+ T
Sbjct: 36 FDSDAASPREEPRAPWIEQEGPEYWDRETQICKAKAQTDREDLRTLLRYYNQSEAGSHT- 94
Query: 231 SELPLQVLDFSDHKPESE----YYNHLYSGTDFLEGEDEELSWFNA 272
LQ + D P+ Y+ Y G D++ ++ SW A
Sbjct: 95 ----LQNMYGCDVGPDGRLLRGYHQDAYDGKDYIALNEDLSSWTAA 136
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 230 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 288
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 289 EIYTHFTCATD 299
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 233 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 291
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 292 EIYTHFTCATD 302
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 230 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 288
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 289 EIYTHFTCATD 299
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 233 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 291
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 292 EIYTHFTCATD 302
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 232 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 290
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 291 EIYTHFTCATD 301
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 229 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 287
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 288 EIYTHFTCATD 298
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 228 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 286
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 287 EIYTHFTCATD 297
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 188 FSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPES 247
F+DT IIL + +K + + PEY A + ++ + + Q D + K
Sbjct: 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTK 316
Query: 248 EYYNHLYSGTD 258
E Y H TD
Sbjct: 317 EIYTHFTCATD 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,908,582
Number of Sequences: 62578
Number of extensions: 354123
Number of successful extensions: 762
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 38
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)