BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021535
         (311 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GUH2|Y1015_ARATH Uncharacterized protein At1g01500 OS=Arabidopsis thaliana
           GN=At1g01500 PE=2 SV=1
          Length = 327

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/299 (42%), Positives = 172/299 (57%), Gaps = 33/299 (11%)

Query: 34  SWLDLRVFYVRVSKFESDDSTPECLTLNHIPLHPHTLLEVNGVRTSIYADGASTLLRRDR 93
           +WL++R+FYVR++    ++  P+ LTL H        LEVNGVR    +  AS  LRRDR
Sbjct: 41  AWLEVRLFYVRIAPCVVEN-VPDFLTLRHPRRETGASLEVNGVRVP-SSQTASLKLRRDR 98

Query: 94  LDKKSEEVTFVSTDSIRTTGSVKFEVFDKDVLVLSG---VIESCNSNGFTTESRNHDQRW 150
           +D++S EVT+VST+++R TG V FEV+D + +VL G    IE   +NG  ++ +     W
Sbjct: 99  VDRESSEVTYVSTETVRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNGTVSDPKTG---W 155

Query: 151 CMNCKSDITAGPGFLK---AKQFMSSD--SASPTIEVYVAGTFSDTPIILTKTLQLSSRK 205
            M+C   I  G G +    A  F       +SP++EVY+AG     P+ILTKT+Q S R+
Sbjct: 156 GMDCY--IAMGNGHVSGPSASVFFQPKFGVSSPSVEVYIAGCCGGVPVILTKTIQASPRR 213

Query: 206 KQTRRGVLDSIPEYEASEESQK------DTPSELPLQVL-------DFSDHKPESEYYNH 252
           K  R   LD+IPE E   + Q       +   +  +Q++       D SD K    YY  
Sbjct: 214 KVARHVTLDAIPEDEEVGKEQDIGTIGDELARQSKVQMMESEVDEYDDSDMKMAQRYYPE 273

Query: 253 LYSGTDFLEGEDEELSWFNAGVRVGVGIGLSICLGIGIGVGMLVRTYQGTTRNFRRRLL 311
                     ED +LSWFNAGVRVGVGIGL +CLG+GIGVG+L+R+YQ TT N RRR L
Sbjct: 274 -----GMYVDEDGQLSWFNAGVRVGVGIGLGMCLGVGIGVGLLMRSYQATTSNLRRRFL 327


>sp|Q2S1S3|GSA_SALRD Glutamate-1-semialdehyde 2,1-aminomutase OS=Salinibacter ruber
           (strain DSM 13855 / M31) GN=hemL PE=3 SV=2
          Length = 438

 Score = 37.0 bits (84), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 127 LSGVIESCNSN-----------GFTTESRNHDQRWC----MNCKSDITAGP---GFLKAK 168
           L G+ E C+++           GF        +R+     + C   I  G    G    K
Sbjct: 229 LEGLRELCDAHDIVLVFDEVMTGFRVAPGGAQERYGVIPDLTCLGKIIGGGLPVGAYGGK 288

Query: 169 QFMSSDSASPTIEVYVAGTFSDTPIILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKD 228
           Q +  D  +PT  VY AGT S  P+ +     + S+  + +  + D + +Y  +E  QK 
Sbjct: 289 QEIM-DYVAPTGPVYQAGTLSGNPLAMRAGHAILSKIAEEKDRIYDQLEDY--AEALQKG 345

Query: 229 TPSELPLQVLDFSDHK 244
           T   L    LD++ H+
Sbjct: 346 TEHNLDALGLDYTTHQ 361


>sp|Q53205|NIFB_RHISN FeMo cofactor biosynthesis protein NifB OS=Rhizobium sp. (strain
           NGR234) GN=nifB PE=3 SV=1
          Length = 493

 Score = 33.1 bits (74), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 58  LTLNHIPLHPHTLLEVNGVRTSIYADGASTLLRRDRLDKKSEEVTFVSTDSIRTTGSVKF 117
            TL+H+PL PH     +G +   Y +  +  +R D L+ K + +  V++ +IR  GS++ 
Sbjct: 326 FTLDHVPLEPH----YDGAKRQAYREVVAR-IRDDHLEAKEKAIATVASANIR--GSLQV 378

Query: 118 EVFDK 122
            V  K
Sbjct: 379 AVATK 383


>sp|P01893|HLAH_HUMAN Putative HLA class I histocompatibility antigen, alpha chain H
           OS=Homo sapiens GN=HLA-H PE=5 SV=3
          Length = 362

 Score = 32.7 bits (73), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 141 TESRNHDQRWCMNCKSDITAGP------GFLKAKQFM--SSDSASPTIEVYVAGTFSDTP 192
           T +R+H  R+     S   AG       G++   QF+   SD ASP  E        + P
Sbjct: 22  TWARSHSMRYFYTTMSRPGAGEPRFISVGYVDDTQFVRFDSDDASPREEPRAPWMEREGP 81

Query: 193 IILTKTLQLSSRKKQTRRGVLDSIPEYEASEESQKDTPSELPLQVLDFSDHKPESE---- 248
               +  Q+   + QT R  L     Y    E    T     +QV+   D  P+      
Sbjct: 82  KYWDRNTQICKAQAQTERENLRIALRYYNQSEGGSHT-----MQVMYGCDVGPDGPFLRG 136

Query: 249 YYNHLYSGTDFLEGEDEELSWFNA 272
           Y  H Y G D++   ++  SW  A
Sbjct: 137 YEQHAYDGKDYIALNEDLRSWTAA 160


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,730,039
Number of Sequences: 539616
Number of extensions: 5127377
Number of successful extensions: 14196
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 14172
Number of HSP's gapped (non-prelim): 16
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)