Query 021535
Match_columns 311
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05478 isopropylmalate isome 44.7 9.7 0.00021 39.3 0.9 36 271-310 397-436 (466)
2 TIGR01340 aconitase_mito aconi 40.1 12 0.00027 40.8 0.9 39 271-310 404-447 (745)
3 TIGR01342 acon_putative aconit 38.8 11 0.00025 40.4 0.4 47 263-310 335-382 (658)
4 PF04571 Lipin_N: lipin, N-ter 38.7 52 0.0011 28.3 4.2 49 34-104 38-86 (110)
5 TIGR02086 IPMI_arch 3-isopropy 37.8 14 0.00031 37.6 0.9 37 270-310 343-383 (412)
6 PF05549 Allexi_40kDa: Allexiv 34.2 58 0.0013 31.9 4.2 52 71-134 184-240 (271)
7 PRK05880 F0F1 ATP synthase sub 34.2 0.43 9.3E-06 38.5 -8.5 30 276-305 11-42 (81)
8 PRK00292 glk glucokinase; Prov 33.6 27 0.0006 32.8 2.0 36 265-300 114-149 (316)
9 cd01584 AcnA_Mitochondrial Aco 30.8 20 0.00043 36.6 0.6 39 271-310 345-387 (412)
10 cd01583 IPMI 3-isopropylmalate 29.3 26 0.00057 35.4 1.2 36 271-310 319-358 (382)
11 PRK12466 isopropylmalate isome 29.1 18 0.0004 37.4 -0.0 38 270-310 398-438 (471)
12 PHA00727 hypothetical protein 28.4 23 0.00051 33.8 0.6 13 279-291 225-237 (278)
13 PLN00070 aconitate hydratase 27.2 31 0.00066 38.9 1.3 45 265-310 528-584 (936)
14 TIGR01343 hacA_fam homoaconita 27.2 31 0.00066 35.3 1.2 38 270-310 344-384 (412)
15 PRK00402 3-isopropylmalate deh 26.7 21 0.00046 36.5 -0.0 38 270-310 347-387 (418)
16 cd01585 AcnA_Bact Aconitase ca 26.6 25 0.00054 35.6 0.4 39 271-310 318-356 (380)
17 PRK07229 aconitate hydratase; 26.2 24 0.00052 37.9 0.3 46 264-310 339-385 (646)
18 PRK11413 putative hydratase; P 25.1 20 0.00044 39.2 -0.5 40 270-310 410-449 (751)
19 TIGR02083 LEU2 3-isopropylmala 21.6 38 0.00083 34.8 0.7 38 270-310 349-389 (419)
20 TIGR00139 h_aconitase homoacon 21.6 34 0.00073 37.4 0.3 46 264-310 381-428 (712)
21 PF05366 Sarcolipin: Sarcolipi 21.2 10 0.00023 25.7 -2.3 7 294-300 24-30 (31)
22 cd01582 Homoaconitase Homoacon 20.3 52 0.0011 33.3 1.2 38 270-310 299-339 (363)
23 PF12733 Cadherin-like: Cadher 20.2 1.1E+02 0.0024 23.2 2.9 34 56-89 25-58 (88)
24 TIGR00170 leuC 3-isopropylmala 20.2 49 0.0011 34.4 1.1 35 271-309 397-435 (465)
No 1
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=44.67 E-value=9.7 Score=39.32 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=28.7
Q ss_pred eeceeeeeeeeeeeeeeeeeee---E-EEEeeeeccccchhccc
Q 021535 271 NAGVRVGVGIGLSICLGIGIGV---G-MLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvGIGV---G-LLvrsYq~Ttr~frRrl 310 (311)
.||.+| .+-|-|.|+|.+-|+ | +.++ ++.|||+-|.
T Consensus 397 ~aG~~i-~~~gCg~C~G~~~~~l~~ge~~vs---t~NRNF~GR~ 436 (466)
T PRK05478 397 EAGFEW-REPGCSMCLAMNPDKLPPGERCAS---TSNRNFEGRQ 436 (466)
T ss_pred HcCCEE-cCCccccccCcCCCCCCCCCEEEE---ecCCCCCCCC
Confidence 788888 689999999987665 3 4455 7899999873
No 2
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=40.13 E-value=12 Score=40.77 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.8
Q ss_pred eeceeeeeeeeeeeeeeee-----eeeEEEEeeeeccccchhccc
Q 021535 271 NAGVRVGVGIGLSICLGIG-----IGVGMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvG-----IGVGLLvrsYq~Ttr~frRrl 310 (311)
.||.+| ++-|-|.|+|.+ ++-|-.+..--++.|||+-|.
T Consensus 404 ~aGa~v-~~~gCg~CiG~~~~~~~~~~ge~~~~vst~NRNF~GR~ 447 (745)
T TIGR01340 404 KFGGIV-LANACGPCIGQWDRKDDVKKGEPNTILTSYNRNFRGRN 447 (745)
T ss_pred HcCCEE-eCCCccccccCCCCcCccCCCCceEEEEecCCCCCcCC
Confidence 689999 789999999985 445555556678999999883
No 3
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=38.84 E-value=11 Score=40.40 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=34.4
Q ss_pred CcceeeeE-eeceeeeeeeeeeeeeeeeeeeEEEEeeeeccccchhccc
Q 021535 263 EDEELSWF-NAGVRVGVGIGLSICLGIGIGVGMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 263 edgeLSWF-nAGVRVGVGIGLGvClGvGIGVGLLvrsYq~Ttr~frRrl 310 (311)
++|-+.-| .||.+| ++-|-|.|+|.|-+.+---.+-.++.|||+-|.
T Consensus 335 ~~G~~~~l~~aGa~i-~~~gCg~CiG~~~~~~~~~~~vst~NRNF~gR~ 382 (658)
T TIGR01342 335 QEGALAEFLAAGANF-LEAACGACIGIGFAPASDGVSLRSFNRNFEGRA 382 (658)
T ss_pred HcCcHHHHHHcCCEE-eCCCccccccCCCCCCCCcEEEEccCCCCCccC
Confidence 34555554 689999 589999999986654433566778899999873
No 4
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=38.66 E-value=52 Score=28.29 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=31.7
Q ss_pred CceEEEEEEEEEcCCCCCCCCCCceeeeecCCCCCceeEEcCcccCCCCCCceeEEeeecCCCCCceeEEE
Q 021535 34 SWLDLRVFYVRVSKFESDDSTPECLTLNHIPLHPHTLLEVNGVRTSIYADGASTLLRRDRLDKKSEEVTFV 104 (311)
Q Consensus 34 ~wLdvRvFYVRvS~c~~d~s~P~~LTL~h~P~~~dt~LEVNG~r~~~~s~~~s~~LRRDRvD~~s~EaTyV 104 (311)
..|.--=||||+-+..+= .|+.--.-++|||..+ .+..+.+ +.|||-||
T Consensus 38 Gs~~sSPFhVRFGk~~vl-----------~~~ek~V~I~VNG~~~-------~~~MkLg----~~GeAfFv 86 (110)
T PF04571_consen 38 GSLKSSPFHVRFGKLGVL-----------RPREKVVDIEVNGKPV-------DFHMKLG----ENGEAFFV 86 (110)
T ss_pred CCEecCccEEEEcceeee-----------cccCcEEEEEECCEEc-------ceEEEEC----CCcEEEEE
Confidence 445555589999988652 3344445688999653 2455554 58899776
No 5
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=37.78 E-value=14 Score=37.63 Aligned_cols=37 Identities=43% Similarity=0.713 Sum_probs=28.4
Q ss_pred Eeeceeeeeeeeeeeeeeeeeee---E-EEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGV---G-MLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGV---G-LLvrsYq~Ttr~frRrl 310 (311)
-.||.+| ..-|-|.|+|.+-|+ | ..++ ++.|||+-|.
T Consensus 343 ~~aGa~i-~~pgCg~C~G~~~g~~~~ge~~vs---T~NRNF~GR~ 383 (412)
T TIGR02086 343 IRAGAII-CPPGCGPCLGRHMGVLGDGEVCVS---TTNRNFRGRM 383 (412)
T ss_pred HHcCCEE-cCCccccccCcCCCcCCCCCEEEE---ecCCCCCcCC
Confidence 3688888 489999999998664 3 3344 7999999873
No 6
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=34.19 E-value=58 Score=31.87 Aligned_cols=52 Identities=42% Similarity=0.558 Sum_probs=35.2
Q ss_pred eEEcCc--ccCCCC--CCceeEEeeecCCC-CCceeEEEeecceeecCceEEEEEcCCeEEEEEeeeee
Q 021535 71 LEVNGV--RTSIYA--DGASTLLRRDRLDK-KSEEVTFVSTDSIRTTGSVKFEVFDKDVLVLSGVIESC 134 (311)
Q Consensus 71 LEVNG~--r~~~~s--~~~s~~LRRDRvD~-~s~EaTyVSTd~VR~tgsv~FEV~d~~e~lL~G~Le~~ 134 (311)
+|.||. +|||+= -.+|..||.. ++. -+.+.|. |.|+++|.+-++|+-.+|.-
T Consensus 184 i~fnG~~l~iPMDi~GRpaSTaL~L~-~~v~~s~q~T~-----------V~y~L~DdG~LLlsd~i~T~ 240 (271)
T PF05549_consen 184 IEFNGSSLRIPMDIRGRPASTALRLE-LDVTPSDQSTT-----------VKYKLFDDGYLLLSDEIETP 240 (271)
T ss_pred EEECCEeeeccccccCCCCcceEEEE-EEEeecCCCcE-----------EEEEEecCceEEeeccccch
Confidence 557776 455532 2267777766 554 2455554 48999999999999888754
No 7
>PRK05880 F0F1 ATP synthase subunit C; Validated
Probab=34.17 E-value=0.43 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=19.2
Q ss_pred eeeeeeeee-eeeeeeeeEEEEee-eeccccc
Q 021535 276 VGVGIGLSI-CLGIGIGVGMLVRT-YQGTTRN 305 (311)
Q Consensus 276 VGVGIGLGv-ClGvGIGVGLLvrs-Yq~Ttr~ 305 (311)
+|+||..|. ++|.|||+|.+..+ -++..||
T Consensus 11 igagla~glaaiGagiG~G~v~~~a~eaiaRq 42 (81)
T PRK05880 11 IGGGLIMAGGAIGAGIGDGVAGNALISGVARQ 42 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355555544 78999999977544 3555554
No 8
>PRK00292 glk glucokinase; Provisional
Probab=33.56 E-value=27 Score=32.77 Aligned_cols=36 Identities=31% Similarity=0.250 Sum_probs=22.9
Q ss_pred ceeeeEeeceeeeeeeeeeeeeeeeeeeEEEEeeee
Q 021535 265 EELSWFNAGVRVGVGIGLSICLGIGIGVGMLVRTYQ 300 (311)
Q Consensus 265 geLSWFnAGVRVGVGIGLGvClGvGIGVGLLvrsYq 300 (311)
.++.||.+|-..+..--+.+-+|-|||.|+++..|.
T Consensus 114 ~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~g~~ 149 (316)
T PRK00292 114 EDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVPVDG 149 (316)
T ss_pred hheeEeCCCCCCCCCcEEEEEcCCcceEEEEEecCC
Confidence 347788776432234455666778888888877644
No 9
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=30.76 E-value=20 Score=36.65 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=29.4
Q ss_pred eeceeeeeeeeeeeeeeeeeee----EEEEeeeeccccchhccc
Q 021535 271 NAGVRVGVGIGLSICLGIGIGV----GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvGIGV----GLLvrsYq~Ttr~frRrl 310 (311)
+||.+| .+-|-|.|+|.+-|. |-....--++.|||+-|.
T Consensus 345 ~aG~~i-~~pgCg~C~G~~~~~~~~~g~~~~~vsT~NRNF~GR~ 387 (412)
T cd01584 345 DAGGIV-LANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRN 387 (412)
T ss_pred HcCCEE-cCCcccccccCCCCcccCCCCceEEEEecCCCCCCCC
Confidence 688888 589999999997652 333344567899999884
No 10
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=29.33 E-value=26 Score=35.38 Aligned_cols=36 Identities=42% Similarity=0.687 Sum_probs=27.3
Q ss_pred eeceeeeeeeeeeeeeeeeeee---E-EEEeeeeccccchhccc
Q 021535 271 NAGVRVGVGIGLSICLGIGIGV---G-MLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvGIGV---G-LLvrsYq~Ttr~frRrl 310 (311)
.||.+|. .-|-|.|+|.+-|+ | ..+. +|.|||+-|.
T Consensus 319 ~aGa~i~-~pgCg~C~G~~~g~~~~ge~~vs---T~NRNF~GRm 358 (382)
T cd01583 319 EAGAEVR-PPGCGACLGGHMGVLAPGERCVS---TSNRNFKGRM 358 (382)
T ss_pred HCCCEEe-CCCcccccCCCCCcCCCCCEEEE---ecCCCCCcCC
Confidence 5788884 78999999987664 2 3343 7999999873
No 11
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=29.11 E-value=18 Score=37.45 Aligned_cols=38 Identities=37% Similarity=0.504 Sum_probs=28.9
Q ss_pred Eeeceeeeeeeeeeeeeeeeeee---EEEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGV---GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGV---GLLvrsYq~Ttr~frRrl 310 (311)
-+||.+| .+-|-|+|+|.+-|+ | =+.--++.|||+-|.
T Consensus 398 ~~aG~~i-~~~gCg~C~G~~~~~~~~g--e~~vsT~NRNF~GR~ 438 (471)
T PRK12466 398 IAAGFEW-REPGCSMCLAMNDDVLAPG--ERCASTTNRNFEGRQ 438 (471)
T ss_pred HHcCCEE-cCCccccccCcCCCCCCCC--CEEEEecCCCCCCCC
Confidence 3688888 689999999987765 2 134467899999873
No 12
>PHA00727 hypothetical protein
Probab=28.41 E-value=23 Score=33.77 Aligned_cols=13 Identities=46% Similarity=1.165 Sum_probs=6.8
Q ss_pred eeeeeeeeeeeee
Q 021535 279 GIGLSICLGIGIG 291 (311)
Q Consensus 279 GIGLGvClGvGIG 291 (311)
|||+|+.+|.||.
T Consensus 225 gigigvaigfgia 237 (278)
T PHA00727 225 GIGIGVAIGFGIA 237 (278)
T ss_pred hcccceeeeeccc
Confidence 4444555555554
No 13
>PLN00070 aconitate hydratase
Probab=27.19 E-value=31 Score=38.86 Aligned_cols=45 Identities=22% Similarity=0.484 Sum_probs=35.0
Q ss_pred ceeeeE-eeceeeeeeeeeeeeeeeeeee-----------EEEEeeeeccccchhccc
Q 021535 265 EELSWF-NAGVRVGVGIGLSICLGIGIGV-----------GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 265 geLSWF-nAGVRVGVGIGLGvClGvGIGV-----------GLLvrsYq~Ttr~frRrl 310 (311)
|-+.=| .||.+| +|-|-|+|+|.+-+. .|.+++--++.|||+-|.
T Consensus 528 Gl~~~L~~aGf~v-~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~ 584 (936)
T PLN00070 528 GLQKYLNQQGFHI-VGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRV 584 (936)
T ss_pred CcHHHHHHcCCEE-cCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCC
Confidence 433333 578888 799999999988665 466788899999999873
No 14
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=27.16 E-value=31 Score=35.33 Aligned_cols=38 Identities=37% Similarity=0.555 Sum_probs=28.5
Q ss_pred Eeeceeeeeeeeeeeeeeeeeee---EEEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGV---GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGV---GLLvrsYq~Ttr~frRrl 310 (311)
-.||.+| ..-|-|.|+|.+-|+ |- +.--++.|||+-|.
T Consensus 344 ~~aG~~i-~~pgCg~C~G~~~g~l~~ge--~~vsT~NRNF~GR~ 384 (412)
T TIGR01343 344 VKAGAVV-STPGCGPCLGRHQGVLAPGE--VCISTSNRNFKGRM 384 (412)
T ss_pred HHcCCEE-cCCccccccCcCCCcCCCCC--EEEEecCCCCCCCC
Confidence 3688898 589999999987665 32 23446799999883
No 15
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=26.69 E-value=21 Score=36.52 Aligned_cols=38 Identities=37% Similarity=0.536 Sum_probs=28.5
Q ss_pred Eeeceeeeeeeeeeeeeeeeeee---EEEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGV---GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGV---GLLvrsYq~Ttr~frRrl 310 (311)
-+||.+| .+-|-|.|+|.+-|+ | -+.--++.|||+-|.
T Consensus 347 ~~aGa~i-~~pgCg~C~G~~~g~~~~g--e~~vsT~NRNF~GR~ 387 (418)
T PRK00402 347 VDAGAVV-STPTCGPCLGGHMGVLAPG--EVCLSTTNRNFKGRM 387 (418)
T ss_pred HHcCCEE-cCCccccccCcCCCcCCCC--CEEEEecCCCCCCCC
Confidence 3688888 589999999987764 2 234556889999873
No 16
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=26.62 E-value=25 Score=35.62 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=27.4
Q ss_pred eeceeeeeeeeeeeeeeeeeeeEEEEeeeeccccchhccc
Q 021535 271 NAGVRVGVGIGLSICLGIGIGVGMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvGIGVGLLvrsYq~Ttr~frRrl 310 (311)
.||.+| .+-|=|.|+|.+=+.+-=-+.--++.|||+-|.
T Consensus 318 ~aGa~i-~~pgCg~C~G~~~~~~~ge~~vsT~NRNF~GRm 356 (380)
T cd01585 318 AAGARI-LESACGPCIGMGQAPPTGGVSVRTFNRNFEGRS 356 (380)
T ss_pred HcCCEE-eCCCceeccCCCCCCCCCcEEEEccCCCCCccC
Confidence 588888 689999999974332222445567899999873
No 17
>PRK07229 aconitate hydratase; Validated
Probab=26.24 E-value=24 Score=37.88 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=31.0
Q ss_pred cceeeeE-eeceeeeeeeeeeeeeeeeeeeEEEEeeeeccccchhccc
Q 021535 264 DEELSWF-NAGVRVGVGIGLSICLGIGIGVGMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 264 dgeLSWF-nAGVRVGVGIGLGvClGvGIGVGLLvrsYq~Ttr~frRrl 310 (311)
+|-+.-| .||.+| ++-|-|.|+|.|--.+-=-.+--++.|||+-|.
T Consensus 339 ~Gl~~~l~~aGa~i-~~~gCg~CiG~g~~~~~~~~~vst~NRNF~GR~ 385 (646)
T PRK07229 339 DGALADLIAAGARI-LENACGPCIGMGQAPATGNVSLRTFNRNFPGRS 385 (646)
T ss_pred CCcHHHHHHcCCEE-eCCCccccccCCCCCCCCcEEEEccCCCCCccC
Confidence 3444444 588888 689999999976322211344567899999873
No 18
>PRK11413 putative hydratase; Provisional
Probab=25.14 E-value=20 Score=39.25 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=27.7
Q ss_pred EeeceeeeeeeeeeeeeeeeeeeEEEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGVGMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGVGLLvrsYq~Ttr~frRrl 310 (311)
-.||.+| ..-|-|.|+|.|=+.+==-++=.+++|||+-|.
T Consensus 410 ~~AGa~i-~~~gCgpCiG~~~~~~~ge~~isTsNRNF~GR~ 449 (751)
T PRK11413 410 MGAGAII-RTAFCGPCFGAGDTPANNGLSIRHTTRNFPNRE 449 (751)
T ss_pred HHcCCEE-CCCchhhhhCcCCcCCCCCEEEeecCCCCCCCC
Confidence 3688888 688999999976222101334456899999873
No 19
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=21.60 E-value=38 Score=34.77 Aligned_cols=38 Identities=37% Similarity=0.551 Sum_probs=28.3
Q ss_pred Eeeceeeeeeeeeeeeeeeeeee---EEEEeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGV---GMLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGV---GLLvrsYq~Ttr~frRrl 310 (311)
-.||..| ..-|-|.|+|.+.|+ | -+.--++.|||+-|.
T Consensus 349 ~~aGa~i-~~pgCg~C~G~~~g~l~~g--e~~vsT~NRNF~GRm 389 (419)
T TIGR02083 349 IEAGAVV-STPTCGPCLGGHMGILAEG--ERAISTTNRNFVGRM 389 (419)
T ss_pred HHcCCEE-cCCccccccCcCCCcCCCC--CEEEEecCCCCCccC
Confidence 3678777 478999999987665 2 245567899999874
No 20
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=21.59 E-value=34 Score=37.43 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=31.7
Q ss_pred cceeeeE-eeceeeeeeeeeeeeeeeeeeeE-EEEeeeeccccchhccc
Q 021535 264 DEELSWF-NAGVRVGVGIGLSICLGIGIGVG-MLVRTYQGTTRNFRRRL 310 (311)
Q Consensus 264 dgeLSWF-nAGVRVGVGIGLGvClGvGIGVG-LLvrsYq~Ttr~frRrl 310 (311)
+|-+.-| +||.++. .-|-|.|+|.|-|+- =--++-.++.|||+-|.
T Consensus 381 ~Gl~~~l~~AGa~i~-~~gCg~CiG~~~~~~~~gev~isT~NRNF~GRm 428 (712)
T TIGR00139 381 NGAWEKLLEAGAIPL-PAGCGPCIGLGAGLLEPGEVGISASNRNFKGRM 428 (712)
T ss_pred CCcHHHHHHcCCEEc-CCccccccCcCCCCCCCCCEEEEecCCCCCCCC
Confidence 3444444 6899985 789999999876631 01345568899999873
No 21
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=21.17 E-value=10 Score=25.69 Aligned_cols=7 Identities=71% Similarity=1.279 Sum_probs=3.0
Q ss_pred EEEeeee
Q 021535 294 MLVRTYQ 300 (311)
Q Consensus 294 LLvrsYq 300 (311)
|||||||
T Consensus 24 llvrsyq 30 (31)
T PF05366_consen 24 LLVRSYQ 30 (31)
T ss_dssp HHTTS--
T ss_pred HHHHhhc
Confidence 4566666
No 22
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=20.27 E-value=52 Score=33.26 Aligned_cols=38 Identities=34% Similarity=0.665 Sum_probs=28.4
Q ss_pred EeeceeeeeeeeeeeeeeeeeeeEEE---Eeeeeccccchhccc
Q 021535 270 FNAGVRVGVGIGLSICLGIGIGVGML---VRTYQGTTRNFRRRL 310 (311)
Q Consensus 270 FnAGVRVGVGIGLGvClGvGIGVGLL---vrsYq~Ttr~frRrl 310 (311)
-.||.+| ..-|=|.|+|.+-|+ + =+.--++.|||+-|.
T Consensus 299 ~~aGa~i-~~pgCg~C~G~~~~~--~~~ge~~vsT~NRNF~GR~ 339 (363)
T cd01582 299 LEAGATP-LPAGCGPCIGLGQGL--LEPGEVGISATNRNFKGRM 339 (363)
T ss_pred HHCCCEE-ECCCCeeccCCCCCC--CCCCCEEEEecCCCCCcCC
Confidence 3688888 589999999988774 1 123457899999873
No 23
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=20.23 E-value=1.1e+02 Score=23.23 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=24.8
Q ss_pred CceeeeecCCCCCceeEEcCcccCCCCCCceeEE
Q 021535 56 ECLTLNHIPLHPHTLLEVNGVRTSIYADGASTLL 89 (311)
Q Consensus 56 ~~LTL~h~P~~~dt~LEVNG~r~~~~s~~~s~~L 89 (311)
++++|.-.|..++..+.|||......+....+.|
T Consensus 25 ~~v~v~a~~~~~~a~v~vng~~~~~~~~~~~i~L 58 (88)
T PF12733_consen 25 DSVTVTATPEDSGATVTVNGVPVNSGGYSATIPL 58 (88)
T ss_pred eEEEEEEEECCCCEEEEEcCEEccCCCcceeeEc
Confidence 4688998999999999999977654322345555
No 24
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=20.22 E-value=49 Score=34.37 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=26.5
Q ss_pred eeceeeeeeeeeeeeeeeeeee---E-EEEeeeeccccchhcc
Q 021535 271 NAGVRVGVGIGLSICLGIGIGV---G-MLVRTYQGTTRNFRRR 309 (311)
Q Consensus 271 nAGVRVGVGIGLGvClGvGIGV---G-LLvrsYq~Ttr~frRr 309 (311)
.||..+ .+-|-|+|+|.+-|+ | ..+ -++.|||+-|
T Consensus 397 ~aG~~i-~~~gCg~C~G~~~~~~~~ge~~i---sTsNRNF~GR 435 (465)
T TIGR00170 397 EAGFEW-REPGCSMCLGMNNDRLPEGERCA---STSNRNFEGR 435 (465)
T ss_pred HcCCEE-cCCccccccCcCCCCCCCCCEEE---EecCCCCCCC
Confidence 578887 689999999977664 2 223 3889999987
Done!