Query 021536
Match_columns 311
No_of_seqs 222 out of 1366
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 2.8E-06 9.4E-11 67.9 11.8 71 176-246 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 1.9E-06 6.6E-11 71.6 8.7 66 179-244 37-103 (137)
3 4dve_A Biotin transporter BIOY 20.4 3.7E+02 0.012 22.8 7.9 90 170-261 15-109 (198)
4 3rlf_F Maltose transport syste 6.1 1.6E+03 0.053 21.5 8.3 63 173-241 15-77 (514)
5 2kv5_A FST, putative uncharact 3.2 5.3E+02 0.018 15.6 1.4 11 232-242 9-19 (33)
6 3arc_T Photosystem II reaction 2.6 1.1E+03 0.038 14.0 3.9 20 289-308 10-30 (32)
7 3aqp_A Probable secdf protein- 2.2 3.9E+03 0.13 19.5 10.3 34 207-241 602-635 (741)
8 2akh_X Protein-export membrane 1.8 1.2E+03 0.041 16.3 2.0 21 109-129 55-75 (77)
9 2hac_A T-cell surface glycopro 1.7 1.6E+03 0.056 13.4 2.2 15 212-226 16-30 (33)
10 2zt9_E Cytochrome B6-F complex 1.6 1.6E+03 0.055 13.2 2.7 17 252-268 11-27 (31)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=2.8e-06 Score=67.89 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHH-HhhhHHHHHHHHHHHhcccCChhHHHHHHHHHHhhhhhcccc
Q 021536 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (311)
Q Consensus 176 l~lgvl~~l~~~~~n~al~~vsvs~a~ii-ka~~Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l~~~~e 246 (311)
+...+++.++..+...++++++++.+..+ ..+.|+++++++++++||++++.+++++.++++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33344577888899999999999999888 899999999999999999999999999999999999876543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.31 E-value=1.9e-06 Score=71.64 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHH-HhhhHHHHHHHHHHHhcccCChhHHHHHHHHHHhhhhhcc
Q 021536 179 AVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 244 (311)
Q Consensus 179 gvl~~l~~~~~n~al~~vsvs~a~ii-ka~~Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l~~~ 244 (311)
.+++.++.++.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|+++...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34577888999999999999999888 8999999999999999999999999999999999998754
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.36 E-value=3.7e+02 Score=22.82 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHhhhHHHHHHHHHHHhcccCChhHHHHHHHHHHhhhhhccccccc
Q 021536 170 KLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSF 249 (311)
Q Consensus 170 ~~~~~ll~lgvl~~l~~~~~n~al~~vsvs~a~iika~~Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l~~~~e~sf 249 (311)
++.+.+..++++-++..++...+ .++.++.-+=..+..+.+.+.+.++-.++=.....+=+++..+|+=+.+.+....
T Consensus 15 ~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~ 92 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGA 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCch
Confidence 45667777776654433333221 2333222111235666666666665555544455555666777775554432222
Q ss_pred -----cHHHHHHHHHHH
Q 021536 250 -----NWTGFISAMISN 261 (311)
Q Consensus 250 -----~~~G~llallS~ 261 (311)
...|++++..-+
T Consensus 93 ~~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 93 ASFLGPSGGYRIAWLFT 109 (198)
T ss_dssp GGGGSTTHHHHHHHHHH
T ss_pred hHHhcchhHHHHHHHHH
Confidence 235777665533
No 4
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=6.14 E-value=1.6e+03 Score=21.49 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHhhhHHHHHHHHHHHhcccCChhHHHHHHHHHHhhhh
Q 021536 173 KLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (311)
Q Consensus 173 ~~ll~lgvl~~l~~~~~n~al~~vsvs~a~iika~~Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l 241 (311)
.++..++++..++.+.....+..-+-.+. ...-+.+++..++++.+|.=.++++ .+.++|+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~y~--~p~~~~~~~ 77 (514)
T 3rlf_F 15 LKWSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYV--YPGMAGMGL 77 (514)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTTTCHHHH----HHHHHHHHHHHHHHHCGGGCTHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccHHHH----HHHHHHHHHHeEEEECCCcccHHHH--HHHHHHHHH
Confidence 35667787777666665555555554443 3344566777788887776666664 455555543
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=3.24 E-value=5.3e+02 Score=15.62 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.1
Q ss_pred HHHHHHhhhhh
Q 021536 232 LAPVVIGVSMA 242 (311)
Q Consensus 232 l~lii~GV~l~ 242 (311)
++++++|+++-
T Consensus 9 IaPivVGvvl~ 19 (33)
T 2kv5_A 9 IAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56788888764
No 6
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=2.56 E-value=1.1e+03 Score=14.03 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh-cCcccc
Q 021536 289 IIALFVCIPPAIIV-SKRKLS 308 (311)
Q Consensus 289 ~~s~i~LlP~al~~-E~~~~~ 308 (311)
+.+.+..+-+++++ |.|+..
T Consensus 10 l~~tlgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 10 FACIIALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHhhhhcCCCCCC
Confidence 33444444455555 777653
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=2.18 E-value=3.9e+03 Score=19.48 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHhcccCChhHHHHHHHHHHhhhh
Q 021536 207 LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 241 (311)
Q Consensus 207 ~~Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l 241 (311)
..++...+....+++..++.....++++ ++|+.+
T Consensus 602 ~~~~~~~~g~l~l~g~~l~~~~i~~~l~-liGisv 635 (741)
T 3aqp_A 602 AHDVAIVAGMYSLLGLEFSIPTIAALLT-IVGYSI 635 (741)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHH-HHHHhh
Confidence 3344444444455666677666555443 355543
No 8
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=1.76 E-value=1.2e+03 Score=16.27 Aligned_cols=21 Identities=10% Similarity=0.501 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021536 109 VTGFFFFMWYFLNVIFNILNK 129 (311)
Q Consensus 109 ~~~~~~~lw~~~si~~~i~nK 129 (311)
.+..+.++|...++.+.+++|
T Consensus 55 ~T~~la~~F~v~sl~l~~~~~ 75 (77)
T 2akh_X 55 MTALLATLFFIISLVLGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445556667777776655544
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=1.67 E-value=1.6e+03 Score=13.38 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=8.2
Q ss_pred HHHHHHHHhcccCCh
Q 021536 212 NAAASQFILGQQLPL 226 (311)
Q Consensus 212 v~lls~l~lkek~s~ 226 (311)
-+++..++.++|+..
T Consensus 16 gii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 16 GVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 345555566666543
No 10
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=1.65 E-value=1.6e+03 Score=13.21 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021536 252 TGFISAMISNISFTYRS 268 (311)
Q Consensus 252 ~G~llallS~l~~Al~~ 268 (311)
.++..++++.+.++++.
T Consensus 11 l~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 11 LALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555666666666554
Done!