Query 021536
Match_columns 311
No_of_seqs 222 out of 1366
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 05:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021536.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021536hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 10.5 1.8E+02 0.013 17.4 4.4 31 91-124 4-34 (46)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.3 5.2E+02 0.038 20.4 8.4 53 175-231 5-57 (248)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 6.3 2.2E+02 0.016 15.1 3.9 22 285-306 5-28 (30)
4 d2h5na1 a.287.1.2 (A:1-132) Hy 2.7 5.6E+02 0.041 17.5 3.2 28 235-263 89-116 (132)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 2.4 4.9E+02 0.036 13.3 2.7 19 252-270 3-21 (27)
6 d1e12a_ f.13.1.1 (A:) Halorhod 2.3 1.2E+03 0.088 17.5 5.7 14 206-219 91-104 (239)
7 d1m0ka_ f.13.1.1 (A:) Bacterio 2.1 1.3E+03 0.091 17.3 9.4 14 206-219 84-97 (227)
8 d1xmec1 f.23.9.1 (C:2-34) Bact 2.1 4.2E+02 0.031 14.2 1.4 6 97-102 3-8 (33)
9 d1u7ga_ f.44.1.1 (A:) Ammonium 1.1 2.3E+03 0.17 17.0 21.3 85 209-295 239-327 (383)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 1.1 1.1E+03 0.08 15.1 2.4 9 232-240 8-16 (158)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.48 E-value=1.8e+02 Score=17.44 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=17.2
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 021536 91 DSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIF 124 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~lw~~~si~~ 124 (311)
|+.|...+-+.-+|++ +.+..++++++++..
T Consensus 4 eGPG~NLPFsv~Nk~r---Lla~m~~~fGsgfa~ 34 (46)
T d1v54l_ 4 EGPGKNIPFSVENKWR---LLAMMTLFFGSGFAA 34 (46)
T ss_dssp CSTTTSSSSCCSSHHH---HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccchhHHH---HHHHHHHHHhccccc
Confidence 5566666666555433 444555555665543
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.26 E-value=5.2e+02 Score=20.45 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHhhhHHHHHHHHHHHhcccCChhHHHH
Q 021536 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLS 231 (311)
Q Consensus 175 ll~lgvl~~l~~~~~n~al~~vsvs~a~iika~~Pifv~lls~l~lkek~s~~~~ls 231 (311)
++.+|++.++..++....+..-+-.++. ..-+.+.++.++++.+|.-+++++-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 5567777766666666666665554443 3335567777888888888888853
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.31 E-value=2.2e+02 Score=15.10 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=10.9
Q ss_pred HHHHHH-HHHHHHHHHHHh-cCcc
Q 021536 285 AYISII-ALFVCIPPAIIV-SKRK 306 (311)
Q Consensus 285 ~y~~~~-s~i~LlP~al~~-E~~~ 306 (311)
.|..++ +.+.++-+++++ |.|.
T Consensus 5 ~yv~ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 5 TYVFIFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred ehHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444 344455566555 5554
No 4
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.67 E-value=5.6e+02 Score=17.46 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHhhhhhccccccccHHHHHHHHHHHHH
Q 021536 235 VVIGVSMASLTELSFNWTGFISAMISNIS 263 (311)
Q Consensus 235 ii~GV~l~~~~e~sf~~~G~llallS~l~ 263 (311)
...|+++++-++.+-|-. -+|.++|.+|
T Consensus 89 sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 567898988777665533 3566777665
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.42 E-value=4.9e+02 Score=13.31 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021536 252 TGFISAMISNISFTYRSIY 270 (311)
Q Consensus 252 ~G~llallS~l~~Al~~V~ 270 (311)
.|.+.+-++.+.|+.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 4667777777777776543
No 6
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.25 E-value=1.2e+03 Score=17.53 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHHHH
Q 021536 206 ALEPFFNAAASQFI 219 (311)
Q Consensus 206 a~~Pifv~lls~l~ 219 (311)
-++|+...-+..+-
T Consensus 91 lTtPLll~~l~l~~ 104 (239)
T d1e12a_ 91 LSTPMILLALGLLA 104 (239)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHH
Confidence 35677666555443
No 7
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=2.10 E-value=1.3e+03 Score=17.32 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHH
Q 021536 206 ALEPFFNAAASQFI 219 (311)
Q Consensus 206 a~~Pifv~lls~l~ 219 (311)
-++|+...-+..+.
T Consensus 84 lTtPLll~~l~li~ 97 (227)
T d1m0ka_ 84 FTTPLLLLDLALLV 97 (227)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 35687766554433
No 8
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=2.08 E-value=4.2e+02 Score=14.20 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=3.0
Q ss_pred CCcccc
Q 021536 97 APVRFF 102 (311)
Q Consensus 97 ~~~~~~ 102 (311)
+++|.+
T Consensus 3 kp~gal 8 (33)
T d1xmec1 3 KPKGAL 8 (33)
T ss_dssp CCHHHH
T ss_pred CccchH
Confidence 445554
No 9
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=1.13 E-value=2.3e+03 Score=16.96 Aligned_cols=85 Identities=8% Similarity=0.000 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcccCChhHHHHHHHHHHhhhhhccccccccHH-HHHHHHHHH-HHHHHHHHHHhhhc-c-CCCHHHHH
Q 021536 209 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWT-GFISAMISN-ISFTYRSIYSKKAM-T-DMDSTNIY 284 (311)
Q Consensus 209 Pifv~lls~l~lkek~s~~~~lsl~lii~GV~l~~~~e~sf~~~-G~llallS~-l~~Al~~V~~Kkll-~-~~~~~~l~ 284 (311)
-.++.++...+.++|++....+.- +++|++-++....-.++. .++...++. +++-.+..+.+|+. + .++...+-
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vH 316 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVH 316 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeeh
Confidence 334444444456777877765543 344555544333333433 344444433 44444444444432 2 25666666
Q ss_pred HHHHHHHHHHH
Q 021536 285 AYISIIALFVC 295 (311)
Q Consensus 285 ~y~~~~s~i~L 295 (311)
...-+++.+..
T Consensus 317 g~~Gi~G~l~~ 327 (383)
T d1u7ga_ 317 GVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 66666666544
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=1.06 E-value=1.1e+03 Score=15.07 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=4.1
Q ss_pred HHHHHHhhh
Q 021536 232 LAPVVIGVS 240 (311)
Q Consensus 232 l~lii~GV~ 240 (311)
++++++|++
T Consensus 8 VViaIIgIL 16 (158)
T d2pila_ 8 IVIAIVGIL 16 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444543
Done!