Query 021537
Match_columns 311
No_of_seqs 357 out of 2416
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.8 6.1E-20 1.3E-24 152.5 16.1 81 37-121 8-88 (195)
2 PLN03134 glycine-rich RNA-bind 99.8 5.8E-19 1.3E-23 146.9 16.3 85 36-120 31-116 (144)
3 KOG0113 U1 small nuclear ribon 99.8 2.8E-18 6.1E-23 153.2 17.4 85 34-118 96-181 (335)
4 KOG4207 Predicted splicing fac 99.8 8.4E-18 1.8E-22 143.2 12.9 84 34-117 8-92 (256)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.8E-16 1E-20 147.0 13.1 84 37-120 267-351 (352)
6 KOG0121 Nuclear cap-binding pr 99.7 1.7E-16 3.6E-21 125.7 7.9 86 35-120 32-118 (153)
7 PF00076 RRM_1: RNA recognitio 99.6 8.4E-16 1.8E-20 110.9 8.6 70 42-111 1-70 (70)
8 KOG0105 Alternative splicing f 99.6 3E-15 6.4E-20 125.7 10.6 81 37-119 4-84 (241)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.7E-15 5.8E-20 142.0 10.9 82 38-119 2-84 (352)
10 TIGR01659 sex-lethal sex-letha 99.6 2.9E-15 6.2E-20 141.6 10.9 83 35-117 103-186 (346)
11 TIGR01659 sex-lethal sex-letha 99.6 4.8E-14 1E-18 133.3 13.9 83 38-120 192-277 (346)
12 KOG0125 Ataxin 2-binding prote 99.6 1.5E-14 3.2E-19 131.0 9.2 86 32-118 89-174 (376)
13 KOG0122 Translation initiation 99.5 2.4E-14 5.3E-19 125.0 9.8 83 36-118 186-269 (270)
14 PF14259 RRM_6: RNA recognitio 99.5 3.6E-14 7.8E-19 103.0 9.1 70 42-111 1-70 (70)
15 KOG0130 RNA-binding protein RB 99.5 2.1E-14 4.6E-19 114.8 8.1 85 36-120 69-154 (170)
16 PLN03120 nucleic acid binding 99.5 6.7E-14 1.5E-18 125.3 10.6 76 39-117 4-79 (260)
17 KOG0149 Predicted RNA-binding 99.5 2.1E-14 4.6E-19 124.9 7.1 78 39-117 12-90 (247)
18 TIGR01645 half-pint poly-U bin 99.5 1.5E-13 3.3E-18 137.1 10.9 82 38-119 203-285 (612)
19 smart00362 RRM_2 RNA recogniti 99.5 3.1E-13 6.8E-18 96.5 9.1 72 41-113 1-72 (72)
20 PLN03213 repressor of silencin 99.5 1.6E-13 3.5E-18 129.9 9.3 78 37-117 8-87 (759)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.6E-13 9.9E-18 132.9 13.1 82 36-117 292-374 (509)
22 PLN03121 nucleic acid binding 99.5 3.6E-13 7.8E-18 118.9 10.4 76 38-116 4-79 (243)
23 TIGR01648 hnRNP-R-Q heterogene 99.5 2.1E-12 4.6E-17 128.6 16.9 77 37-120 231-309 (578)
24 TIGR01645 half-pint poly-U bin 99.5 2.1E-13 4.5E-18 136.1 9.7 81 36-116 104-185 (612)
25 KOG0131 Splicing factor 3b, su 99.4 1.3E-13 2.8E-18 115.7 6.4 82 35-116 5-87 (203)
26 TIGR01622 SF-CC1 splicing fact 99.4 4.5E-13 9.8E-18 131.3 10.9 79 39-117 186-265 (457)
27 KOG0114 Predicted RNA-binding 99.4 5.8E-13 1.2E-17 102.0 8.8 82 34-117 13-94 (124)
28 KOG0126 Predicted RNA-binding 99.4 2E-14 4.2E-19 120.5 0.3 81 37-117 33-114 (219)
29 KOG0148 Apoptosis-promoting RN 99.4 3.6E-13 7.8E-18 119.2 7.9 86 35-120 58-144 (321)
30 TIGR01628 PABP-1234 polyadenyl 99.4 6.5E-13 1.4E-17 133.6 10.9 83 36-118 282-364 (562)
31 TIGR01628 PABP-1234 polyadenyl 99.4 5.9E-13 1.3E-17 133.9 10.5 77 41-117 2-79 (562)
32 cd00590 RRM RRM (RNA recogniti 99.4 2.3E-12 4.9E-17 92.5 9.8 74 41-114 1-74 (74)
33 KOG0111 Cyclophilin-type pepti 99.4 2.5E-13 5.4E-18 117.0 5.4 85 37-121 8-93 (298)
34 KOG0148 Apoptosis-promoting RN 99.4 1.4E-12 3E-17 115.5 10.1 88 28-120 153-240 (321)
35 TIGR01648 hnRNP-R-Q heterogene 99.4 9.2E-13 2E-17 131.2 9.8 77 37-113 56-133 (578)
36 TIGR01622 SF-CC1 splicing fact 99.4 1.2E-12 2.7E-17 128.2 10.6 81 36-117 86-167 (457)
37 smart00360 RRM RNA recognition 99.4 2E-12 4.3E-17 91.8 8.4 70 44-113 1-71 (71)
38 COG0724 RNA-binding proteins ( 99.4 2.3E-12 5E-17 115.0 9.9 79 39-117 115-194 (306)
39 KOG0145 RNA-binding protein EL 99.4 4.1E-12 8.8E-17 112.1 10.8 84 35-118 274-358 (360)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.4E-12 7.3E-17 126.2 10.7 78 37-118 273-351 (481)
41 KOG0127 Nucleolar protein fibr 99.3 3.9E-12 8.4E-17 122.0 9.0 83 38-120 116-198 (678)
42 KOG0108 mRNA cleavage and poly 99.3 3.7E-12 7.9E-17 122.6 8.2 81 40-120 19-100 (435)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 7.9E-12 1.7E-16 123.6 10.1 76 38-118 1-78 (481)
44 KOG0117 Heterogeneous nuclear 99.3 1.2E-11 2.7E-16 116.1 10.0 80 36-115 80-161 (506)
45 KOG0146 RNA-binding protein ET 99.3 3.9E-12 8.5E-17 112.5 5.6 86 35-120 281-367 (371)
46 KOG0415 Predicted peptidyl pro 99.3 5.5E-12 1.2E-16 115.4 6.3 84 36-119 236-320 (479)
47 PF13893 RRM_5: RNA recognitio 99.3 2.4E-11 5.3E-16 84.4 7.8 56 56-115 1-56 (56)
48 KOG0124 Polypyrimidine tract-b 99.3 3.9E-12 8.4E-17 116.8 4.7 75 39-113 113-188 (544)
49 KOG0117 Heterogeneous nuclear 99.3 6E-12 1.3E-16 118.2 5.8 79 35-120 255-333 (506)
50 KOG0144 RNA-binding protein CU 99.3 6.6E-12 1.4E-16 117.5 6.0 86 35-120 120-208 (510)
51 KOG0109 RNA-binding protein LA 99.2 1E-11 2.3E-16 111.1 6.6 73 40-119 3-75 (346)
52 KOG0145 RNA-binding protein EL 99.2 3.7E-11 8E-16 106.1 7.8 83 37-119 39-122 (360)
53 KOG0116 RasGAP SH3 binding pro 99.2 2.1E-10 4.6E-15 110.0 13.4 84 36-120 285-369 (419)
54 KOG0144 RNA-binding protein CU 99.2 7.2E-11 1.6E-15 110.6 8.7 86 34-119 29-118 (510)
55 KOG0109 RNA-binding protein LA 99.2 5.1E-11 1.1E-15 106.7 7.3 82 35-123 74-155 (346)
56 KOG0127 Nucleolar protein fibr 99.2 4.6E-11 1E-15 114.7 7.2 83 39-121 5-88 (678)
57 smart00361 RRM_1 RNA recogniti 99.2 1.6E-10 3.4E-15 84.2 7.9 60 53-112 2-69 (70)
58 KOG4212 RNA-binding protein hn 99.1 2.1E-10 4.5E-15 107.7 8.6 80 38-117 43-123 (608)
59 KOG0147 Transcriptional coacti 99.1 1.1E-10 2.3E-15 112.5 6.3 80 41-120 280-360 (549)
60 KOG4661 Hsp27-ERE-TATA-binding 99.1 5.1E-10 1.1E-14 108.0 9.6 84 37-120 403-487 (940)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.9E-10 8.4E-15 112.0 9.2 74 36-115 172-257 (509)
62 KOG0123 Polyadenylate-binding 99.0 8.4E-10 1.8E-14 105.2 8.7 80 39-120 76-155 (369)
63 KOG0131 Splicing factor 3b, su 99.0 5.7E-10 1.2E-14 93.9 6.5 87 35-121 92-180 (203)
64 KOG0132 RNA polymerase II C-te 99.0 9.2E-10 2E-14 109.6 8.0 75 39-118 421-495 (894)
65 KOG4206 Spliceosomal protein s 99.0 1.4E-09 3E-14 94.6 8.2 84 35-120 5-92 (221)
66 KOG0110 RNA-binding protein (R 98.9 1.7E-09 3.8E-14 106.9 8.0 78 39-116 515-596 (725)
67 KOG0124 Polypyrimidine tract-b 98.9 1.8E-09 3.9E-14 99.5 7.4 79 39-117 210-289 (544)
68 KOG4208 Nucleolar RNA-binding 98.9 5.6E-09 1.2E-13 89.7 8.4 84 35-118 45-130 (214)
69 KOG0153 Predicted RNA-binding 98.9 4E-09 8.7E-14 96.7 7.4 74 39-117 228-302 (377)
70 KOG0106 Alternative splicing f 98.9 1.9E-09 4.2E-14 94.3 5.1 74 40-120 2-75 (216)
71 KOG4205 RNA-binding protein mu 98.9 3.1E-09 6.8E-14 98.4 5.7 83 38-121 5-88 (311)
72 KOG0123 Polyadenylate-binding 98.9 7.4E-09 1.6E-13 98.8 8.4 75 40-119 2-76 (369)
73 KOG0533 RRM motif-containing p 98.8 1E-08 2.3E-13 91.6 8.4 82 38-119 82-163 (243)
74 KOG1548 Transcription elongati 98.8 2.6E-08 5.5E-13 91.4 8.8 83 37-119 132-222 (382)
75 KOG4454 RNA binding protein (R 98.8 3E-09 6.5E-14 92.0 2.5 80 37-117 7-86 (267)
76 KOG4205 RNA-binding protein mu 98.8 8.7E-09 1.9E-13 95.5 5.8 82 38-120 96-178 (311)
77 KOG1457 RNA binding protein (c 98.8 6.9E-08 1.5E-12 83.9 10.5 85 37-121 32-121 (284)
78 KOG0110 RNA-binding protein (R 98.7 7.1E-09 1.5E-13 102.7 4.3 79 39-117 613-692 (725)
79 KOG0146 RNA-binding protein ET 98.7 2E-08 4.4E-13 89.2 6.1 81 38-118 18-101 (371)
80 KOG4209 Splicing factor RNPS1, 98.7 8.1E-08 1.8E-12 85.8 9.7 83 35-118 97-180 (231)
81 KOG4212 RNA-binding protein hn 98.7 2.8E-08 6.1E-13 93.6 6.8 77 35-115 532-608 (608)
82 KOG0151 Predicted splicing reg 98.6 8.8E-08 1.9E-12 94.9 7.5 81 37-117 172-256 (877)
83 KOG4660 Protein Mei2, essentia 98.5 5.4E-08 1.2E-12 94.3 4.0 76 32-111 68-143 (549)
84 KOG1190 Polypyrimidine tract-b 98.4 1.3E-06 2.9E-11 81.9 9.9 75 39-117 297-372 (492)
85 KOG0120 Splicing factor U2AF, 98.4 5.3E-07 1.1E-11 88.0 5.8 86 35-120 285-371 (500)
86 KOG0226 RNA-binding proteins [ 98.3 6E-07 1.3E-11 79.5 5.0 82 37-118 188-270 (290)
87 KOG0106 Alternative splicing f 98.3 1.4E-06 3E-11 76.5 6.2 72 34-112 94-165 (216)
88 PF04059 RRM_2: RNA recognitio 98.3 8.5E-06 1.8E-10 63.0 9.1 80 40-119 2-88 (97)
89 KOG2202 U2 snRNP splicing fact 98.2 4E-07 8.6E-12 80.8 1.9 111 2-116 26-146 (260)
90 KOG4676 Splicing factor, argin 98.1 7.8E-07 1.7E-11 83.0 1.3 74 40-117 152-225 (479)
91 KOG4211 Splicing factor hnRNP- 98.1 1E-05 2.2E-10 77.7 8.8 78 35-115 6-83 (510)
92 KOG4210 Nuclear localization s 98.1 4.9E-06 1.1E-10 76.8 5.5 86 34-120 179-266 (285)
93 KOG1995 Conserved Zn-finger pr 98.1 4.2E-06 9.1E-11 77.6 4.5 84 36-119 63-155 (351)
94 PF11608 Limkain-b1: Limkain b 98.0 1.5E-05 3.4E-10 59.2 6.1 68 40-116 3-75 (90)
95 KOG2314 Translation initiation 98.0 3E-05 6.5E-10 75.6 8.8 89 26-114 45-140 (698)
96 KOG1457 RNA binding protein (c 98.0 7.2E-06 1.6E-10 71.5 4.1 65 39-106 210-274 (284)
97 KOG4211 Splicing factor hnRNP- 97.9 3.5E-05 7.6E-10 74.1 8.0 78 37-115 101-179 (510)
98 KOG4206 Spliceosomal protein s 97.9 4.6E-05 1E-09 66.7 7.5 78 35-116 142-220 (221)
99 PF08777 RRM_3: RNA binding mo 97.9 3.5E-05 7.6E-10 60.6 5.8 71 39-114 1-76 (105)
100 KOG0147 Transcriptional coacti 97.8 8.8E-06 1.9E-10 79.1 2.7 80 37-117 177-257 (549)
101 KOG0120 Splicing factor U2AF, 97.8 3.7E-05 7.9E-10 75.3 6.8 63 55-117 425-491 (500)
102 COG5175 MOT2 Transcriptional r 97.7 6.5E-05 1.4E-09 69.2 6.6 78 39-116 114-201 (480)
103 KOG4676 Splicing factor, argin 97.7 9.4E-05 2E-09 69.3 7.5 74 39-113 7-84 (479)
104 KOG0129 Predicted RNA-binding 97.6 0.00037 8E-09 67.6 9.1 73 39-115 259-338 (520)
105 KOG0105 Alternative splicing f 97.6 0.0012 2.5E-08 56.4 10.9 63 38-106 114-176 (241)
106 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00021 4.5E-09 49.0 4.9 52 40-97 2-53 (53)
107 KOG3152 TBP-binding protein, a 97.5 7.1E-05 1.5E-09 66.6 2.9 72 38-109 73-157 (278)
108 KOG1456 Heterogeneous nuclear 97.4 0.0011 2.3E-08 62.1 9.6 82 34-119 282-364 (494)
109 PF08952 DUF1866: Domain of un 97.4 0.00073 1.6E-08 55.8 7.6 78 32-117 20-106 (146)
110 KOG0112 Large RNA-binding prot 97.4 0.00028 6E-09 72.4 5.9 81 35-120 451-533 (975)
111 KOG1548 Transcription elongati 97.3 0.00061 1.3E-08 63.1 7.2 76 37-115 263-349 (382)
112 KOG4849 mRNA cleavage factor I 97.3 0.00025 5.4E-09 65.7 4.7 76 38-113 79-157 (498)
113 KOG0129 Predicted RNA-binding 97.3 0.00056 1.2E-08 66.4 7.3 68 32-99 363-432 (520)
114 KOG4307 RNA binding protein RB 97.3 0.0018 3.9E-08 64.9 10.3 75 40-114 868-943 (944)
115 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0012 2.5E-08 51.4 6.9 76 39-116 6-90 (100)
116 KOG1365 RNA-binding protein Fu 97.2 0.00056 1.2E-08 64.1 5.3 78 38-115 279-359 (508)
117 KOG1855 Predicted RNA-binding 97.1 0.00033 7.1E-09 66.5 3.3 67 37-103 229-309 (484)
118 KOG1996 mRNA splicing factor [ 97.1 0.0013 2.9E-08 59.7 6.8 63 54-116 301-365 (378)
119 KOG1190 Polypyrimidine tract-b 97.1 0.0015 3.2E-08 61.9 7.1 78 37-117 412-490 (492)
120 KOG1456 Heterogeneous nuclear 97.0 0.0027 5.8E-08 59.6 8.1 77 39-119 120-200 (494)
121 KOG4307 RNA binding protein RB 97.0 0.00088 1.9E-08 67.1 5.1 84 32-115 427-511 (944)
122 KOG2416 Acinus (induces apopto 96.9 0.00098 2.1E-08 65.7 4.8 76 36-116 441-520 (718)
123 KOG2253 U1 snRNP complex, subu 96.7 0.0014 2.9E-08 65.5 3.9 76 31-114 32-107 (668)
124 KOG0128 RNA-binding protein SA 96.7 0.0013 2.8E-08 67.3 3.6 79 39-117 736-814 (881)
125 KOG1365 RNA-binding protein Fu 96.2 0.004 8.7E-08 58.6 3.4 72 40-112 162-237 (508)
126 KOG2068 MOT2 transcription fac 96.2 0.0018 4E-08 60.0 0.8 78 40-117 78-162 (327)
127 PF10309 DUF2414: Protein of u 96.1 0.029 6.3E-07 39.6 6.5 55 39-100 5-62 (62)
128 KOG0112 Large RNA-binding prot 95.9 0.0026 5.6E-08 65.5 0.7 80 36-115 369-448 (975)
129 KOG0128 RNA-binding protein SA 95.9 0.00065 1.4E-08 69.4 -3.6 74 39-112 667-741 (881)
130 KOG0115 RNA-binding protein p5 95.9 0.0096 2.1E-07 53.3 4.0 62 40-101 32-93 (275)
131 PF08675 RNA_bind: RNA binding 95.8 0.052 1.1E-06 40.6 7.1 55 39-101 9-63 (87)
132 KOG4285 Mitotic phosphoprotein 95.5 0.056 1.2E-06 49.6 7.6 64 40-110 198-261 (350)
133 KOG2193 IGF-II mRNA-binding pr 95.3 0.016 3.4E-07 55.3 3.6 72 40-118 2-76 (584)
134 PF15023 DUF4523: Protein of u 95.3 0.1 2.2E-06 43.0 7.6 73 37-116 84-160 (166)
135 PF03880 DbpA: DbpA RNA bindin 95.1 0.13 2.9E-06 37.5 7.3 67 41-115 2-74 (74)
136 PRK11634 ATP-dependent RNA hel 93.8 1 2.2E-05 46.4 12.9 61 48-116 496-561 (629)
137 KOG2135 Proteins containing th 93.8 0.039 8.4E-07 53.4 2.3 69 43-117 376-445 (526)
138 PF04847 Calcipressin: Calcipr 93.5 0.23 5E-06 43.0 6.4 62 52-118 8-71 (184)
139 PF03467 Smg4_UPF3: Smg-4/UPF3 92.8 0.15 3.2E-06 43.9 4.2 79 38-116 6-96 (176)
140 PF07576 BRAP2: BRCA1-associat 92.3 1.4 3.1E-05 34.8 8.9 67 40-107 14-81 (110)
141 KOG4574 RNA-binding protein (c 92.1 0.14 3.1E-06 52.9 3.6 74 41-119 300-375 (1007)
142 KOG2318 Uncharacterized conser 91.8 0.54 1.2E-05 46.8 7.1 82 34-115 169-305 (650)
143 KOG4660 Protein Mei2, essentia 91.4 0.31 6.8E-06 48.2 5.1 81 40-120 389-475 (549)
144 KOG4210 Nuclear localization s 91.0 0.1 2.3E-06 48.3 1.3 80 38-117 87-167 (285)
145 KOG2591 c-Mpl binding protein, 89.3 0.65 1.4E-05 46.1 5.2 68 39-112 175-246 (684)
146 KOG0804 Cytoplasmic Zn-finger 88.0 1.6 3.5E-05 42.3 6.9 68 39-107 74-142 (493)
147 PF11767 SET_assoc: Histone ly 87.9 2.7 5.9E-05 30.0 6.4 55 50-112 11-65 (66)
148 KOG4368 Predicted RNA binding 81.1 3.9 8.4E-05 41.0 6.1 8 256-263 706-713 (757)
149 KOG4019 Calcineurin-mediated s 79.1 1.6 3.5E-05 37.4 2.5 76 38-118 9-90 (193)
150 KOG4410 5-formyltetrahydrofola 78.3 4.8 0.0001 37.0 5.4 48 39-91 330-378 (396)
151 KOG2888 Putative RNA binding p 77.0 2.4 5.3E-05 39.6 3.2 11 79-89 159-169 (453)
152 PF03468 XS: XS domain; Inter 75.4 6.2 0.00013 31.5 4.8 57 40-98 9-75 (116)
153 KOG2193 IGF-II mRNA-binding pr 71.6 0.2 4.4E-06 48.0 -5.2 75 39-116 80-155 (584)
154 KOG4454 RNA binding protein (R 69.9 1.1 2.5E-05 39.5 -0.7 74 37-110 78-155 (267)
155 KOG2888 Putative RNA binding p 69.6 3.4 7.4E-05 38.7 2.3 14 50-63 168-181 (453)
156 KOG2891 Surface glycoprotein [ 64.4 5 0.00011 36.8 2.2 71 35-105 145-247 (445)
157 PF10567 Nab6_mRNP_bdg: RNA-re 63.4 16 0.00034 33.8 5.3 78 39-116 15-106 (309)
158 PHA01750 hypothetical protein 63.3 20 0.00044 25.4 4.6 31 278-308 43-73 (75)
159 PF15513 DUF4651: Domain of un 61.8 21 0.00045 25.2 4.5 21 54-74 9-29 (62)
160 PF06428 Sec2p: GDP/GTP exchan 60.8 19 0.00041 27.9 4.6 32 278-309 2-33 (100)
161 PF02344 Myc-LZ: Myc leucine z 59.4 28 0.0006 21.0 4.0 26 280-305 4-29 (32)
162 KOG4483 Uncharacterized conser 58.8 22 0.00048 34.3 5.5 57 36-98 388-445 (528)
163 KOG0107 Alternative splicing f 58.7 84 0.0018 27.1 8.4 13 38-50 36-48 (195)
164 PF10046 BLOC1_2: Biogenesis o 58.4 24 0.00051 27.2 4.8 36 274-309 56-91 (99)
165 KOG0113 U1 small nuclear ribon 58.4 49 0.0011 30.8 7.5 9 85-93 109-117 (335)
166 smart00596 PRE_C2HC PRE_C2HC d 57.5 24 0.00052 25.4 4.3 60 54-116 2-63 (69)
167 KOG4207 Predicted splicing fac 57.3 93 0.002 27.6 8.7 22 84-105 62-85 (256)
168 COG0724 RNA-binding proteins ( 57.1 11 0.00025 32.6 3.3 65 34-98 220-285 (306)
169 COG5638 Uncharacterized conser 56.6 33 0.00072 33.2 6.3 38 36-73 143-185 (622)
170 KOG0835 Cyclin L [General func 55.9 46 0.00099 31.4 7.0 8 51-58 213-220 (367)
171 KOG2295 C2H2 Zn-finger protein 55.4 2.1 4.5E-05 42.6 -1.8 74 37-110 229-303 (648)
172 PF07530 PRE_C2HC: Associated 53.0 37 0.00079 24.3 4.7 61 54-117 2-64 (68)
173 PF09340 NuA4: Histone acetylt 52.7 23 0.00051 26.2 3.8 28 277-304 2-29 (80)
174 TIGR00162 conserved hypothetic 51.2 15 0.00032 31.9 2.9 9 56-64 39-47 (188)
175 PF04201 TPD52: Tumour protein 51.2 19 0.00042 30.3 3.5 24 285-308 30-53 (162)
176 KOG0151 Predicted splicing reg 49.1 18 0.00039 37.4 3.4 10 83-92 695-704 (877)
177 PRK00846 hypothetical protein; 48.8 36 0.00077 25.1 4.2 21 284-304 41-61 (77)
178 PF00170 bZIP_1: bZIP transcri 48.6 53 0.0012 22.8 5.0 27 282-308 31-57 (64)
179 PF11461 RILP: Rab interacting 48.2 44 0.00096 23.4 4.3 31 278-308 4-34 (60)
180 PF04568 IATP: Mitochondrial A 47.0 38 0.00083 26.3 4.3 23 284-306 76-98 (100)
181 PF07716 bZIP_2: Basic region 46.4 68 0.0015 21.5 5.1 24 282-305 30-53 (54)
182 KOG3580 Tight junction protein 46.4 2.8E+02 0.0061 28.6 11.1 33 40-72 62-95 (1027)
183 KOG4246 Predicted DNA-binding 45.8 10 0.00022 39.8 1.2 11 38-48 144-154 (1194)
184 KOG2548 SWAP mRNA splicing reg 44.6 12 0.00026 37.3 1.4 19 289-307 593-611 (653)
185 PF14182 YgaB: YgaB-like prote 44.6 33 0.00072 25.3 3.4 25 284-308 40-64 (79)
186 PF09707 Cas_Cas2CT1978: CRISP 44.4 45 0.00097 25.1 4.2 48 39-88 25-72 (86)
187 COG1315 Uncharacterized conser 44.1 26 0.00056 34.9 3.6 28 283-310 409-436 (543)
188 PF04728 LPP: Lipoprotein leuc 43.0 47 0.001 22.9 3.7 15 289-303 15-29 (56)
189 PF12443 AKNA: AT-hook-contain 42.9 23 0.00051 27.7 2.6 17 287-303 55-71 (106)
190 PRK14127 cell division protein 42.3 54 0.0012 25.9 4.5 29 279-307 39-67 (109)
191 PRK09458 pspB phage shock prot 42.1 43 0.00094 24.5 3.7 29 280-308 38-66 (75)
192 smart00338 BRLZ basic region l 41.8 68 0.0015 22.3 4.7 24 284-307 40-63 (65)
193 PF14077 WD40_alt: Alternative 41.5 17 0.00037 23.9 1.3 20 287-306 14-33 (48)
194 PF07989 Microtub_assoc: Micro 40.9 54 0.0012 24.0 4.1 31 280-310 39-69 (75)
195 PF12958 DUF3847: Protein of u 40.8 43 0.00093 25.2 3.6 29 279-307 3-31 (86)
196 cd04779 HTH_MerR-like_sg4 Heli 40.7 48 0.001 27.0 4.3 28 283-310 80-107 (134)
197 PF09457 RBD-FIP: FIP domain ; 39.7 69 0.0015 21.3 4.1 30 280-309 3-32 (48)
198 PF03961 DUF342: Protein of un 39.0 57 0.0012 32.1 5.3 38 273-310 371-408 (451)
199 PHA02109 hypothetical protein 38.9 51 0.0011 28.1 4.2 33 274-306 190-222 (233)
200 PF03439 Spt5-NGN: Early trans 38.9 45 0.00098 24.7 3.6 35 65-103 33-67 (84)
201 PF04102 SlyX: SlyX; InterPro 38.4 47 0.001 23.7 3.4 21 284-304 32-52 (69)
202 PF06667 PspB: Phage shock pro 37.9 54 0.0012 24.0 3.7 27 282-308 40-66 (75)
203 PF08826 DMPK_coil: DMPK coile 37.9 86 0.0019 22.0 4.5 28 278-305 33-60 (61)
204 PF15466 DUF4635: Domain of un 37.1 41 0.00088 26.8 3.1 26 284-309 98-123 (135)
205 KOG4008 rRNA processing protei 37.0 21 0.00045 32.0 1.6 37 34-70 35-71 (261)
206 KOG4213 RNA-binding protein La 37.0 44 0.00095 28.8 3.5 36 64-99 132-169 (205)
207 PRK04325 hypothetical protein; 36.8 69 0.0015 23.3 4.1 21 284-304 37-57 (74)
208 PF04568 IATP: Mitochondrial A 36.7 93 0.002 24.1 5.0 12 289-300 88-99 (100)
209 PRK10803 tol-pal system protei 36.3 70 0.0015 29.2 5.0 28 283-310 60-87 (263)
210 COG1382 GimC Prefoldin, chaper 36.2 79 0.0017 25.3 4.7 27 284-310 84-110 (119)
211 PRK00295 hypothetical protein; 35.5 87 0.0019 22.3 4.4 21 284-304 33-53 (68)
212 KOG3684 Ca2+-activated K+ chan 35.3 69 0.0015 31.6 4.9 35 276-310 433-467 (489)
213 PF15456 Uds1: Up-regulated Du 35.1 1E+02 0.0022 24.9 5.2 40 268-307 72-111 (124)
214 PRK00736 hypothetical protein; 35.1 79 0.0017 22.5 4.1 20 284-303 33-52 (68)
215 PRK02119 hypothetical protein; 34.6 87 0.0019 22.7 4.4 21 284-304 37-57 (73)
216 PF11932 DUF3450: Protein of u 33.8 71 0.0015 28.7 4.7 31 280-310 80-110 (251)
217 PF07334 IFP_35_N: Interferon- 33.6 47 0.001 24.4 2.8 18 288-305 11-28 (76)
218 PF12269 zf-CpG_bind_C: CpG bi 33.6 74 0.0016 28.6 4.6 40 268-309 22-61 (236)
219 KOG3335 Predicted coiled-coil 33.5 73 0.0016 27.3 4.3 29 280-308 102-130 (181)
220 PRK04406 hypothetical protein; 33.2 94 0.002 22.7 4.4 20 284-303 39-58 (75)
221 cd01106 HTH_TipAL-Mta Helix-Tu 33.1 86 0.0019 23.9 4.4 24 284-307 80-103 (103)
222 PF02183 HALZ: Homeobox associ 32.6 1E+02 0.0022 20.2 4.0 27 283-309 18-44 (45)
223 PF14916 CCDC92: Coiled-coil d 32.6 63 0.0014 22.6 3.1 32 274-305 3-42 (60)
224 PF04508 Pox_A_type_inc: Viral 32.6 48 0.001 18.6 2.0 17 286-302 3-19 (23)
225 PRK02793 phi X174 lysis protei 31.6 1.1E+02 0.0023 22.2 4.4 20 284-303 36-55 (72)
226 PF14893 PNMA: PNMA 31.6 43 0.00094 31.7 2.9 59 34-92 13-74 (331)
227 cd04775 HTH_Cfa-like Helix-Tur 31.4 88 0.0019 23.9 4.2 26 282-307 76-101 (102)
228 KOG1295 Nonsense-mediated deca 31.4 49 0.0011 31.8 3.2 67 39-105 7-77 (376)
229 PF08946 Osmo_CC: Osmosensory 31.3 86 0.0019 20.6 3.3 22 284-305 19-40 (46)
230 PF08331 DUF1730: Domain of un 30.9 36 0.00079 24.8 1.9 14 296-309 52-65 (78)
231 CHL00123 rps6 ribosomal protei 30.5 2.4E+02 0.0053 21.4 6.8 68 40-111 9-91 (97)
232 KOG1760 Molecular chaperone Pr 30.4 1.4E+02 0.0029 24.2 5.1 36 273-308 83-119 (131)
233 TIGR02976 phageshock_pspB phag 30.3 1E+02 0.0022 22.6 4.1 27 282-308 40-66 (75)
234 PF04102 SlyX: SlyX; InterPro 30.1 1.4E+02 0.0031 21.2 4.8 27 284-310 25-51 (69)
235 KOG4603 TBP-1 interacting prot 29.9 94 0.002 26.6 4.3 29 281-309 90-118 (201)
236 PF04977 DivIC: Septum formati 29.9 94 0.002 22.1 4.0 26 278-303 25-50 (80)
237 PRK11230 glycolate oxidase sub 29.9 1.6E+02 0.0034 29.6 6.7 64 38-101 188-255 (499)
238 smart00150 SPEC Spectrin repea 29.7 1.1E+02 0.0024 22.0 4.5 34 276-309 30-63 (101)
239 PF12548 DUF3740: Sulfatase pr 29.6 58 0.0012 27.1 3.0 23 284-306 106-128 (145)
240 PF08227 DASH_Hsk3: DASH compl 29.6 46 0.00099 21.9 1.9 24 288-311 6-29 (45)
241 KOG0132 RNA polymerase II C-te 29.2 1.3E+02 0.0029 31.7 6.0 28 80-109 509-536 (894)
242 PF14389 Lzipper-MIP1: Leucine 28.9 1.3E+02 0.0027 22.6 4.6 32 278-309 55-86 (88)
243 PF02714 DUF221: Domain of unk 28.8 56 0.0012 30.3 3.2 33 83-117 1-33 (325)
244 PF06657 Cep57_MT_bd: Centroso 28.6 75 0.0016 23.4 3.2 30 278-310 14-43 (79)
245 PF00398 RrnaAD: Ribosomal RNA 28.4 58 0.0013 29.4 3.2 33 39-71 97-131 (262)
246 cd01109 HTH_YyaN Helix-Turn-He 28.4 1.2E+02 0.0027 23.4 4.7 31 279-309 81-111 (113)
247 PF00170 bZIP_1: bZIP transcri 28.2 1.6E+02 0.0034 20.4 4.7 21 284-304 40-60 (64)
248 PF09006 Surfac_D-trimer: Lung 27.9 99 0.0021 20.4 3.2 19 287-305 2-20 (46)
249 PF05739 SNARE: SNARE domain; 27.9 65 0.0014 21.9 2.7 17 292-308 5-21 (63)
250 PF02403 Seryl_tRNA_N: Seryl-t 27.7 1E+02 0.0022 23.6 4.1 28 281-308 71-98 (108)
251 COG0030 KsgA Dimethyladenosine 27.6 88 0.0019 28.6 4.1 33 39-71 95-127 (259)
252 cd01107 HTH_BmrR Helix-Turn-He 27.5 1.4E+02 0.0029 23.1 4.7 28 282-309 80-107 (108)
253 PF14282 FlxA: FlxA-like prote 27.4 71 0.0015 24.9 3.1 10 274-283 19-28 (106)
254 PRK13879 conjugal transfer pro 27.3 79 0.0017 28.8 3.8 31 279-309 40-70 (253)
255 PF13815 Dzip-like_N: Iguana/D 27.1 1.3E+02 0.0027 23.8 4.5 23 282-304 92-114 (118)
256 TIGR00110 ilvD dihydroxy-acid 27.0 2.9E+02 0.0063 28.1 7.9 39 79-120 382-420 (535)
257 PF12999 PRKCSH-like: Glucosid 26.9 1.2E+02 0.0026 26.1 4.5 26 279-304 148-173 (176)
258 TIGR02780 TrbJ_Ti P-type conju 26.8 1.3E+02 0.0029 27.1 5.1 34 277-310 36-69 (246)
259 cd04776 HTH_GnyR Helix-Turn-He 26.8 1.3E+02 0.0027 23.8 4.5 31 278-308 81-111 (118)
260 PF07374 DUF1492: Protein of u 26.7 1.8E+02 0.0038 22.2 5.2 37 274-310 19-55 (100)
261 PRK14127 cell division protein 26.6 2.5E+02 0.0054 22.1 6.0 50 260-309 12-62 (109)
262 PF07047 OPA3: Optic atrophy 3 26.5 1.2E+02 0.0027 24.5 4.5 26 284-309 105-130 (134)
263 PF07106 TBPIP: Tat binding pr 26.5 96 0.0021 26.0 4.0 18 286-303 118-135 (169)
264 PF14584 DUF4446: Protein of u 26.5 1.4E+02 0.0031 24.9 4.9 33 278-310 47-79 (151)
265 KOG4365 Uncharacterized conser 26.0 14 0.0003 36.1 -1.4 76 40-116 4-80 (572)
266 cd04776 HTH_GnyR Helix-Turn-He 25.8 85 0.0018 24.8 3.3 25 285-309 81-105 (118)
267 PF07412 Geminin: Geminin; In 25.4 1.4E+02 0.0031 26.1 4.8 27 278-304 119-145 (200)
268 COG3599 DivIVA Cell division i 25.3 1.2E+02 0.0026 26.9 4.4 23 284-306 44-66 (212)
269 TIGR02894 DNA_bind_RsfA transc 25.2 1.4E+02 0.0031 25.2 4.6 23 285-307 126-148 (161)
270 PRK08559 nusG transcription an 25.2 2.1E+02 0.0047 23.6 5.8 34 66-103 36-69 (153)
271 PF10073 DUF2312: Uncharacteri 25.0 1.5E+02 0.0032 21.7 4.1 28 277-304 4-31 (74)
272 cd04769 HTH_MerR2 Helix-Turn-H 24.7 1.5E+02 0.0033 23.1 4.6 32 279-310 81-112 (116)
273 PF10157 DUF2365: Uncharacteri 24.7 1.4E+02 0.003 24.9 4.5 26 276-301 118-143 (149)
274 PRK11558 putative ssRNA endonu 24.3 1.2E+02 0.0026 23.4 3.7 50 39-90 27-76 (97)
275 TIGR02791 VirB5 P-type DNA tra 24.3 1.3E+02 0.0028 26.5 4.6 33 278-310 35-67 (220)
276 KOG0156 Cytochrome P450 CYP2 s 24.1 1.2E+02 0.0027 30.3 4.8 60 42-110 35-97 (489)
277 PF07412 Geminin: Geminin; In 23.8 96 0.0021 27.2 3.5 32 275-306 123-154 (200)
278 PF04977 DivIC: Septum formati 23.7 1.1E+02 0.0025 21.6 3.5 26 284-309 24-49 (80)
279 PF09278 MerR-DNA-bind: MerR, 23.6 1.2E+02 0.0025 20.7 3.4 22 287-308 39-60 (65)
280 KOG4010 Coiled-coil protein TP 23.3 95 0.0021 26.9 3.2 25 284-308 44-68 (208)
281 PF07047 OPA3: Optic atrophy 3 23.2 1.5E+02 0.0033 24.0 4.4 28 277-304 105-132 (134)
282 KOG1029 Endocytic adaptor prot 23.0 1.2E+02 0.0027 32.0 4.5 27 284-310 479-505 (1118)
283 KOG4797 Transcriptional regula 23.0 98 0.0021 24.3 3.0 21 286-306 62-82 (123)
284 PF08700 Vps51: Vps51/Vps67; 22.9 2.1E+02 0.0046 20.7 4.8 18 290-307 57-74 (87)
285 TIGR03545 conserved hypothetic 22.8 1.3E+02 0.0029 30.6 4.8 33 278-310 213-245 (555)
286 KOG4196 bZIP transcription fac 22.7 2.1E+02 0.0045 23.3 4.9 20 284-303 88-107 (135)
287 PF07716 bZIP_2: Basic region 22.7 1.8E+02 0.004 19.3 4.1 26 284-309 25-50 (54)
288 PF12709 Kinetocho_Slk19: Cent 22.6 1.8E+02 0.0039 22.0 4.3 17 287-303 52-68 (87)
289 PRK00888 ftsB cell division pr 22.6 1.5E+02 0.0034 22.9 4.2 29 277-305 34-62 (105)
290 PF15463 ECM11: Extracellular 22.5 1.9E+02 0.0042 23.5 5.0 27 284-310 112-138 (139)
291 cd01109 HTH_YyaN Helix-Turn-He 22.4 1.1E+02 0.0023 23.8 3.3 26 285-310 80-105 (113)
292 COG1792 MreC Cell shape-determ 22.4 1.6E+02 0.0034 27.2 4.9 30 278-307 77-106 (284)
293 PF12325 TMF_TATA_bd: TATA ele 22.0 2.1E+02 0.0046 22.9 4.9 12 290-301 29-40 (120)
294 COG3750 Uncharacterized protei 22.0 1.7E+02 0.0038 21.6 3.9 29 276-304 13-41 (85)
295 COG5193 LHP1 La protein, small 21.8 37 0.0008 32.8 0.6 59 40-98 175-244 (438)
296 PF05189 RTC_insert: RNA 3'-te 21.8 2.4E+02 0.0053 21.4 5.2 48 41-88 12-65 (103)
297 cd04789 HTH_Cfa Helix-Turn-Hel 21.6 1.6E+02 0.0035 22.5 4.1 23 284-306 78-100 (102)
298 cd01282 HTH_MerR-like_sg3 Heli 21.5 1.2E+02 0.0025 23.7 3.3 20 288-307 85-104 (112)
299 TIGR00161 conserved hypothetic 21.4 90 0.0019 28.0 3.0 24 286-309 203-226 (238)
300 KOG3702 Nuclear polyadenylated 21.3 53 0.0011 33.8 1.6 71 41-112 513-584 (681)
301 TIGR00387 glcD glycolate oxida 21.2 2.4E+02 0.0052 27.3 6.1 64 38-101 130-198 (413)
302 cd04770 HTH_HMRTR Helix-Turn-H 21.2 2.1E+02 0.0046 22.4 4.9 29 280-308 82-110 (123)
303 PF14197 Cep57_CLD_2: Centroso 21.1 2E+02 0.0043 20.6 4.1 26 278-303 41-66 (69)
304 PF14775 NYD-SP28_assoc: Sperm 20.9 3E+02 0.0065 19.1 5.0 29 282-310 31-59 (60)
305 PF05377 FlaC_arch: Flagella a 20.8 1.4E+02 0.003 20.5 3.1 24 284-307 21-44 (55)
306 KOG3335 Predicted coiled-coil 20.5 2.3E+02 0.005 24.3 5.0 31 278-308 107-137 (181)
307 COG5314 Conjugal transfer/entr 20.2 1.4E+02 0.0031 26.8 3.8 28 283-310 50-77 (252)
308 PF08544 GHMP_kinases_C: GHMP 20.2 3E+02 0.0065 19.4 5.2 44 54-101 37-80 (85)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=6.1e-20 Score=152.55 Aligned_cols=81 Identities=32% Similarity=0.585 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.-.++||||||+..+++.+|+.+|.+||+|..|+|..+ +.|||||+|+++.+|+.|+..|+|..|.|..|.|+++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34689999999999999999999999999999999887 68899999999999999999999999999999999997
Q ss_pred cCCCC
Q 021537 117 TRGRK 121 (311)
Q Consensus 117 ~~~~~ 121 (311)
.....
T Consensus 84 G~~r~ 88 (195)
T KOG0107|consen 84 GRPRG 88 (195)
T ss_pred CCccc
Confidence 76553
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=5.8e-19 Score=146.90 Aligned_cols=85 Identities=33% Similarity=0.700 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+++++++|+++|.+||.|..|.|+.+..+ +++|||||+|.+.++|+.||+.|++..|+|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 344689999999999999999999999999999999998876 8999999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986554
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.8e-18 Score=153.15 Aligned_cols=85 Identities=31% Similarity=0.574 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
+..++-+||||+-|+++++|..|+..|.+||+|..|.|+.+..+ +++|||||+|.++.++..|.+..+|.+|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 44577899999999999999999999999999999999999777 99999999999999999999999999999999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
.+...+
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 987554
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.76 E-value=8.4e-18 Score=143.18 Aligned_cols=84 Identities=37% Similarity=0.628 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
..++..++|.|-||.+-|+.++|..+|++||.|..|.|+.++.| .++|||||-|....+|+.|+.+|+|.+|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34566789999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
++|+-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 99864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=4.8e-16 Score=147.05 Aligned_cols=84 Identities=32% Similarity=0.477 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..||..|||..|+|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999855 89999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 77643
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=125.74 Aligned_cols=86 Identities=24% Similarity=0.403 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
+....+|||||||++-++|++|.++|+++|+|..|.|-.++.+ .++|||||+|.+.++|+.||+-++|+.|+.++|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 4456799999999999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
|...-..
T Consensus 112 ~D~GF~e 118 (153)
T KOG0121|consen 112 WDAGFVE 118 (153)
T ss_pred ccccchh
Confidence 8754433
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.4e-16 Score=110.87 Aligned_cols=70 Identities=34% Similarity=0.764 Sum_probs=66.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 42 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
|||+|||.++++++|.++|.+||.|..+.+..+..+..++||||+|.+.++|+.|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999885558899999999999999999999999999999985
No 8
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3e-15 Score=125.72 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...++|||||||.++.+.+|+++|.+||.|..|.|...+. +.+||||+|++..+|+.||..-+|..++|..|.|+++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4568999999999999999999999999999998865432 57899999999999999999999999999999999987
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
.-.
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 643
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=2.7e-15 Score=141.95 Aligned_cols=82 Identities=27% Similarity=0.550 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+..+|||+|||+.+++++|+++|.+||+|..|+|+.++.+ +++|||||+|.+.++|++||..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4679999999999999999999999999999999998765 899999999999999999999999999999999999987
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.9e-15 Score=141.56 Aligned_cols=83 Identities=25% Similarity=0.429 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
.....++|||+|||+++|+++|+++|..||.|+.|+|+.+..+ +++|||||+|.++++|+.||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3456789999999999999999999999999999999998766 899999999999999999999999999999999999
Q ss_pred Eecc
Q 021537 114 EVAT 117 (311)
Q Consensus 114 ~a~~ 117 (311)
++.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8865
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=4.8e-14 Score=133.26 Aligned_cols=83 Identities=28% Similarity=0.543 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCC--eEEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~ 114 (311)
..++|||+|||..+++++|+++|.+||.|..|.|+.++.+ +++|||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3578999999999999999999999999999999998765 889999999999999999999999998866 6899999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876544
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=1.5e-14 Score=130.99 Aligned_cols=86 Identities=28% Similarity=0.571 Sum_probs=78.7
Q ss_pred ccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
.+...+.+..|+|.|||+...+-||..+|.+||.|.+|.|+.+..| +||||||+|++.++|++|-++|||..|.|++|.
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3445667899999999999999999999999999999999987665 889999999999999999999999999999999
Q ss_pred EEEeccC
Q 021537 112 VSEVATR 118 (311)
Q Consensus 112 V~~a~~~ 118 (311)
|..|..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9988654
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.4e-14 Score=125.00 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
-+...+|-|.||+.++++.+|+++|.+||.|..|.|..++.+ .++|||||.|.+.++|.+||..|||+-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346788999999999999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
++|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=3.6e-14 Score=102.96 Aligned_cols=70 Identities=33% Similarity=0.723 Sum_probs=64.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 42 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
|||+|||+.+++++|.++|..||.|..|.+..++.+..+++|||+|.+.++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987677899999999999999999999999999999874
No 15
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=114.81 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.-.++.|||.++..++|+++|.+.|..||+|+.|.+..++.+ ..+|||+|+|++.+.|++|+..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 456899999999999999999999999999999999999877 8999999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+...+.
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 976544
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.7e-14 Score=125.27 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|+.||. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999988754 46899999999999999996 999999999999998754
No 17
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.1e-14 Score=124.86 Aligned_cols=78 Identities=32% Similarity=0.674 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
-++||||||+|++..+.|+.+|++||+|+...|+.|+.+ +++||+||+|.+.++|.+|++.. .-.|+|++..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 478999999999999999999999999999999999988 99999999999999999999964 4689999999998753
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.5e-13 Score=137.11 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
..++|||+|||+++++++|+++|..||.|..|.|+.+..+ +++|||||+|.+.++|..||+.||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999998876 799999999999999999999999999999999999987
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.1e-13 Score=96.46 Aligned_cols=72 Identities=35% Similarity=0.704 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
+|||+|||..++.++|.++|.+||.|..+.+..+. +.+.++|||+|.+.+.|+.|+..|++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6678999999999999999999999999999999873
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.6e-13 Score=129.93 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeCh--HHHHHHHHHcCCCccCCeEEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~--~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.+||||||++.+++++|..+|..||.|..|.|++.. .+|||||+|... .++.+||..|||..++|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999999442 389999999987 789999999999999999999998
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
|++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 854
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.47 E-value=4.6e-13 Score=132.93 Aligned_cols=82 Identities=24% Similarity=0.564 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....+|||+|||+.+++++|.++|..||.|..|.|+.+..+ .++|||||+|.+.++|..||..|+|..|+|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999988665 7899999999999999999999999999999999999
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
+..
T Consensus 372 a~~ 374 (509)
T TIGR01642 372 ACV 374 (509)
T ss_pred Ccc
Confidence 864
No 22
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.6e-13 Score=118.88 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.+++|||+||++.+|+++|++||+.||.|..|.|+.+.. ..+||||+|.++++|+.||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 468999999999999999999999999999999998743 45799999999999999996 99999999999997643
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=2.1e-12 Score=128.63 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcC--CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....+|||+||++++++++|+++|.+| |.|..|.++. +||||+|.+.++|++||+.||+..|+|+.|.|.+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999 9999998754 5999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 988654
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.45 E-value=2.1e-13 Score=136.14 Aligned_cols=81 Identities=30% Similarity=0.624 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+.+++++|+++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.||+.|||..|+|+.|.|..
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 455789999999999999999999999999999999998776 8999999999999999999999999999999999985
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.45 E-value=1.3e-13 Score=115.70 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
+.+...|||||||+..++++.|.++|.+.|+|+.+.|+.++.+ ..+|||||+|.++++|+-|++.||...|.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 4566789999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred Eec
Q 021537 114 EVA 116 (311)
Q Consensus 114 ~a~ 116 (311)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=4.5e-13 Score=131.30 Aligned_cols=79 Identities=30% Similarity=0.620 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..+|||+|||..+++++|.++|.+||.|..|.|+.+..+ +++|||||+|.+.++|..||..|+|..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999999999999998877 8999999999999999999999999999999999999863
No 27
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5.8e-13 Score=102.03 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=73.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
.+......|||.|||+.+|.+++.++|.+||.|..|.|-..+. .+|.|||.|++..+|.+|+..|+|..+.++.|.|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3444467899999999999999999999999999999987666 47899999999999999999999999999999998
Q ss_pred Eecc
Q 021537 114 EVAT 117 (311)
Q Consensus 114 ~a~~ 117 (311)
+-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7655
No 28
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2e-14 Score=120.49 Aligned_cols=81 Identities=35% Similarity=0.768 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....-|||||||+++|+.+|.-+|++||.|+.|.++.++.| +++||||+.|++..+..-|+..|||..|.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 44678999999999999999999999999999999999888 99999999999999999999999999999999999976
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=3.6e-13 Score=119.24 Aligned_cols=86 Identities=31% Similarity=0.568 Sum_probs=80.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
....-.-|||+-|..+++.++|++.|.+||+|..++|++|..+ +++||+||.|...++|+.||..|||..|+++.|+..
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 3444678999999999999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
||..++.
T Consensus 138 WATRKp~ 144 (321)
T KOG0148|consen 138 WATRKPS 144 (321)
T ss_pred ccccCcc
Confidence 9987664
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=6.5e-13 Score=133.63 Aligned_cols=83 Identities=25% Similarity=0.544 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.....+|||+||+..+++++|.++|.+||.|..|+|+.+..+.++|||||+|.+.++|.+||..|||..|+|++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568899999999999999999999999999999999977789999999999999999999999999999999999999
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=5.9e-13 Score=133.91 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=73.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
+|||+|||.++|+++|.++|.+||.|..|+|+.+..+ +++|||||+|.+.++|++||..|++..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999999999886 8999999999999999999999999999999999998753
No 32
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.3e-12 Score=92.45 Aligned_cols=74 Identities=36% Similarity=0.740 Sum_probs=69.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
+|||+|||..+++++|.++|..||.|..+.+..+..+.+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999999887767789999999999999999999999999999999863
No 33
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-13 Score=117.02 Aligned_cols=85 Identities=28% Similarity=0.529 Sum_probs=80.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..-.+||||+|..++++..|...|-.||.|+.|.|+.+..+ +++|||||+|...++|.+||..||+.+|-|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34579999999999999999999999999999999999888 89999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
+|..-.
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986554
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.4e-12 Score=115.54 Aligned_cols=88 Identities=32% Similarity=0.535 Sum_probs=79.3
Q ss_pred hhhhccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 28 IEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 28 ~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
.++.........++||||||+.-+++++|++.|+.||.|..|+|.++ +|||||.|.+.+.|..||..||+.+|.|
T Consensus 153 fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 153 FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCc
Confidence 34455566777899999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred eEEEEEEeccCCC
Q 021537 108 RVVRVSEVATRGR 120 (311)
Q Consensus 108 r~l~V~~a~~~~~ 120 (311)
..++|.|-+....
T Consensus 228 ~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 228 QLVRCSWGKEGDD 240 (321)
T ss_pred eEEEEeccccCCC
Confidence 9999999876544
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=9.2e-13 Score=131.19 Aligned_cols=77 Identities=30% Similarity=0.532 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (311)
..+++|||+|||.++++++|.++|.+||.|..|+|+.+..++++|||||+|.+.++|+.||+.||+..|. |+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3468999999999999999999999999999999999966699999999999999999999999999885 6666554
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.2e-12 Score=128.20 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....+|||+|||+.+++++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|.+||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 344689999999999999999999999999999999998776 899999999999999999997 899999999999987
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 654
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=2e-12 Score=91.84 Aligned_cols=70 Identities=36% Similarity=0.758 Sum_probs=65.1
Q ss_pred EcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 44 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
|+|||..+++++|..+|.+||.|..+.+..++.+ .++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999987764 788999999999999999999999999999999873
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=2.3e-12 Score=114.98 Aligned_cols=79 Identities=35% Similarity=0.778 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCC-CCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS-TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..+|||+|||+.+++++|.++|.+||.|..|.|..++. +..+|||||+|.+.++|..|+..|++..|.|+.|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999964 48999999999999999999999999999999999999764
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.1e-12 Score=112.05 Aligned_cols=84 Identities=31% Similarity=0.464 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
....+++|||-||.+++++..|.++|..||.|..|+|++|..+ +.+||+||.+.+-++|..||..|||..++++.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 3445799999999999999999999999999999999999987 899999999999999999999999999999999999
Q ss_pred EeccC
Q 021537 114 EVATR 118 (311)
Q Consensus 114 ~a~~~ 118 (311)
|...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87543
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.35 E-value=3.4e-12 Score=126.20 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.++++|||+|||+ .+++++|.++|+.||.|..|+|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 6999999999999999999999886 4689999999999999999999999999999999998
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
+..
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 654
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.9e-12 Score=121.99 Aligned_cols=83 Identities=25% Similarity=0.479 Sum_probs=78.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
+-+.|.|.|||+.+...+|+.+|+.||.|..|.|+....++.+|||||.|....+|..||+.||+..|+|++|-|.||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 36899999999999999999999999999999999988888889999999999999999999999999999999999987
Q ss_pred CCC
Q 021537 118 RGR 120 (311)
Q Consensus 118 ~~~ 120 (311)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=3.7e-12 Score=122.64 Aligned_cols=81 Identities=36% Similarity=0.696 Sum_probs=77.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
+.|||||||+++++++|..+|+..|.|..++++.|+.+ +++|||||+|.+.++|..|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999888 99999999999999999999999999999999999998654
Q ss_pred CC
Q 021537 119 GR 120 (311)
Q Consensus 119 ~~ 120 (311)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.31 E-value=7.9e-12 Score=123.58 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHc--CCCccCCeEEEEEEe
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRVSEV 115 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l--~g~~i~Gr~l~V~~a 115 (311)
+..+|||+|||+.+++++|.++|.+||.|..|.|+. .++||||+|.+.++|+.||+.| ++..|.|+.|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 357999999999999999999999999999999986 3679999999999999999864 788999999999998
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 653
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.2e-11 Score=116.11 Aligned_cols=80 Identities=28% Similarity=0.506 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (311)
...++-||||.||.++.|++|.-+|++.|+|-.++|+.++.+ .++|||||+|.+.+.|+.||+.||+++|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 356899999999999999999999999999999999999665 99999999999999999999999999885 8888887
Q ss_pred Ee
Q 021537 114 EV 115 (311)
Q Consensus 114 ~a 115 (311)
.+
T Consensus 160 ~S 161 (506)
T KOG0117|consen 160 VS 161 (506)
T ss_pred Ee
Confidence 65
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=3.9e-12 Score=112.54 Aligned_cols=86 Identities=30% Similarity=0.544 Sum_probs=80.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+++.|||-.||.+....+|.++|..||.|++.+|..|+.+ .+|||+||.|.++.+|+.||..|||+.|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 3567899999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
+.+|+..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 8877643
No 46
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.5e-12 Score=115.42 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.++...|||+.|++.|+.++|+-+|+.||.|..|.|+.+..+ .+-.||||+|++.++|++|.-+|++..|++++|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 466789999999999999999999999999999999999877 7889999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 86543
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.4e-11 Score=84.38 Aligned_cols=56 Identities=36% Similarity=0.685 Sum_probs=50.9
Q ss_pred HHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 56 VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 56 L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
|.++|++||.|..|.+.... +++|||+|.+.++|..|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 589999999999999999999999999999999986
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=3.9e-12 Score=116.78 Aligned_cols=75 Identities=32% Similarity=0.681 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
-+.||||.|.+++.++.|+..|..||+|++|.|.+++.+ +++|||||+|+-++.|+-|++.|||..++|+.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 489999999999999999999999999999999999988 999999999999999999999999999999999986
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=6e-12 Score=118.25 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.+..-..|||.||+.+||++.|+++|.+||.|..|+.+.| ||||.|.+.++|.+|++.|||..|+|..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 3455688999999999999999999999999999998766 999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
|+|...
T Consensus 328 AKP~~k 333 (506)
T KOG0117|consen 328 AKPVDK 333 (506)
T ss_pred cCChhh
Confidence 988544
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=6.6e-12 Score=117.49 Aligned_cols=86 Identities=28% Similarity=0.492 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc-cCC--eEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~-i~G--r~l~ 111 (311)
.+....+||||-|+..+||.+|+++|.+||.|.+|.|+++..+.++|||||.|.+.+-|..||+.|||.. +.| .+|.
T Consensus 120 r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 3355789999999999999999999999999999999999999999999999999999999999999975 555 5899
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|+||.+...
T Consensus 200 VkFADtqkd 208 (510)
T KOG0144|consen 200 VKFADTQKD 208 (510)
T ss_pred EEecccCCC
Confidence 999977544
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=1e-11 Score=111.05 Aligned_cols=73 Identities=33% Similarity=0.696 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
.+|||||||.++++.+|+.+|.+||+|..|.|+++ ||||..++...|+.||..|+|.+|.|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 57999999999999999999999999999999887 99999999999999999999999999999999887763
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.7e-11 Score=106.07 Aligned_cols=83 Identities=29% Similarity=0.563 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
+.-+.|.|--||.++|+++|+.+|...|+|.+|++++|+.+ ++-||+||.|.++++|++||..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44577889999999999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
+|..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 8754
No 53
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.20 E-value=2.1e-10 Score=109.97 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCC-CCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....+|||.|||++++..+|+++|.+||.|+...|..-. .++..|||||+|.+...++.||.+ +-..|++++|.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3445679999999999999999999999999988776543 344459999999999999999996 57889999999998
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
.++...
T Consensus 364 k~~~~~ 369 (419)
T KOG0116|consen 364 KRPGFR 369 (419)
T ss_pred cccccc
Confidence 776443
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7.2e-11 Score=110.64 Aligned_cols=86 Identities=27% Similarity=0.491 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCc-cC--CeE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRT-ID--GRV 109 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~-i~--Gr~ 109 (311)
.+....-+||||.||..++|.+|+.+|++||.|..|.|++|+.+ .++|||||.|.+.++|.+|+.+|+... |- ..+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 33345678999999999999999999999999999999999988 899999999999999999999999875 33 468
Q ss_pred EEEEEeccCC
Q 021537 110 VRVSEVATRG 119 (311)
Q Consensus 110 l~V~~a~~~~ 119 (311)
|.|++|....
T Consensus 109 vqvk~Ad~E~ 118 (510)
T KOG0144|consen 109 VQVKYADGER 118 (510)
T ss_pred eeecccchhh
Confidence 8998886543
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=5.1e-11 Score=106.67 Aligned_cols=82 Identities=28% Similarity=0.541 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....++|+||||.+.++..+|+..|.+||+|..|.|+++ |+||.|.-.++|..|+..|++.+|.|++++|++
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 3456789999999999999999999999999999999876 999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 021537 115 VATRGRKSN 123 (311)
Q Consensus 115 a~~~~~~~~ 123 (311)
+.++-+...
T Consensus 147 stsrlrtap 155 (346)
T KOG0109|consen 147 STSRLRTAP 155 (346)
T ss_pred eccccccCC
Confidence 987655443
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=4.6e-11 Score=114.71 Aligned_cols=83 Identities=22% Similarity=0.525 Sum_probs=78.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
+.||||++||+.++.++|.++|+.+|+|..+.++.+..+ .++||+||+|.-.++++.||+.+.+..|.|+.|.|.+|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 489999999999999999999999999999999999887 8999999999999999999999999999999999999977
Q ss_pred CCCC
Q 021537 118 RGRK 121 (311)
Q Consensus 118 ~~~~ 121 (311)
+.+.
T Consensus 85 R~r~ 88 (678)
T KOG0127|consen 85 RARS 88 (678)
T ss_pred cccc
Confidence 6553
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.6e-10 Score=84.21 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=52.4
Q ss_pred HHHHHHHhh----cCCceEEEE-EeeCC-C--CCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 53 EDSVRKVFD----KYGSVVAVK-IVNDR-S--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 53 e~~L~~~F~----~~G~I~~v~-i~~~~-~--~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
+++|.++|. +||.|..|. |+.++ . ++++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 55543 3 478999999999999999999999999999999986
No 58
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=2.1e-10 Score=107.68 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhh-cCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
....+||.|||+++.|++|+++|. +.|+|..|.+..+..++++|+|.|+|.+++.+++|++.||.+.+.|+.|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346699999999999999999996 6899999999999999999999999999999999999999999999999998664
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.10 E-value=1.1e-10 Score=112.52 Aligned_cols=80 Identities=35% Similarity=0.689 Sum_probs=73.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCC-CCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
.||||||.+++++.+|..+|..||.|..|.++.+. .+.++||+||+|.+.++|.+|+..|||.+|.|+.|+|.....+-
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999997 45999999999999999999999999999999999998775543
Q ss_pred C
Q 021537 120 R 120 (311)
Q Consensus 120 ~ 120 (311)
.
T Consensus 360 ~ 360 (549)
T KOG0147|consen 360 D 360 (549)
T ss_pred c
Confidence 3
No 60
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=5.1e-10 Score=108.01 Aligned_cols=84 Identities=26% Similarity=0.584 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.-+..|||.+|...|...+|+.+|++||.|+-.+|+.+..+ -.+||+||++.+..+|.+||..|+-+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34688999999999999999999999999999999988666 68899999999999999999999999999999999988
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
+....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 65443
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.07 E-value=3.9e-10 Score=112.00 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=61.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcC------------CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKY------------GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~ 103 (311)
.....+|||||||+.+|+++|.++|.+| +.|..+.+.. .+|||||+|.+.++|..||. |+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 4456899999999999999999999875 3444444433 57899999999999999995 9999
Q ss_pred ccCCeEEEEEEe
Q 021537 104 TIDGRVVRVSEV 115 (311)
Q Consensus 104 ~i~Gr~l~V~~a 115 (311)
.|.|..|.|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999998643
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.4e-10 Score=105.18 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=74.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
+..|||.||++.++...|.++|+.||.|++|+|..+..+ ++|| ||+|++++.|.+||..|||..+.|+.|.|.....+
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999888 8999 99999999999999999999999999999887664
Q ss_pred CC
Q 021537 119 GR 120 (311)
Q Consensus 119 ~~ 120 (311)
..
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 44
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.02 E-value=5.7e-10 Score=93.90 Aligned_cols=87 Identities=26% Similarity=0.480 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEE-EEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
..+-+..|||+||.+++++..|.+.|+.||.|... +|+.+..| .++|||||.|.+.+.+.+|+..|||..+..++|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 44556899999999999999999999999998763 67777776 88999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
.++..+...
T Consensus 172 ~ya~k~~~k 180 (203)
T KOG0131|consen 172 SYAFKKDTK 180 (203)
T ss_pred EEEEecCCC
Confidence 999866543
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=9.2e-10 Score=109.59 Aligned_cols=75 Identities=13% Similarity=0.471 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
.+|||||+|+..+++.+|..+|+.||.|.+|.|+. ++|+|||.+....+|.+||.+|....+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 58999999999999999999999999999999987 5789999999999999999999999999999999999654
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=94.60 Aligned_cols=84 Identities=15% Similarity=0.448 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHH----HhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRK----VFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
...+..||||-||+..+..++|+. +|++||.|..|.+.. ..+.+|-|||.|.+.+.|-.|+..|+|..+.|+.+
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 344556999999999999998876 999999999987753 23688999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 021537 111 RVSEVATRGR 120 (311)
Q Consensus 111 ~V~~a~~~~~ 120 (311)
+|.||+....
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999987544
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.7e-09 Score=106.89 Aligned_cols=78 Identities=24% Similarity=0.555 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC----CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.++|||.||++.++.++|..+|.++|.|..|.|...+.. .+.|||||+|.+.++|+.|++.|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999998876544 3569999999999999999999999999999999999
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.8e-09 Score=99.47 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=74.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
-+.|||..+.+++++++|+..|+.||+|+.|.+...+.+ .++||+||+|.+..+...||..||-+.++|.-|+|-.+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 579999999999999999999999999999999999888 7999999999999999999999999999999999976643
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.90 E-value=5.6e-09 Score=89.66 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcC-CceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.......+||..||.-+.+..|..+|.+| |.|..+.+.+++.| .++|||||+|++++.|.-|-+.||+..|.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556788999999999999999999998 77788888777666 89999999999999999999999999999999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
.+-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987765
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=4e-09 Score=96.69 Aligned_cols=74 Identities=27% Similarity=0.456 Sum_probs=66.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHH-cCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND-MNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~-l~g~~i~Gr~l~V~~a~~ 117 (311)
-.+|||++|...+++.+|.++|.+||+|..|.+... +++|||+|.+..+|+.|... ++...|+|.+|.|.|..+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 489999999999999999999999999999998874 56999999999999988774 455568999999999887
No 70
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.9e-09 Score=94.35 Aligned_cols=74 Identities=35% Similarity=0.724 Sum_probs=68.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
..||||+||+.+.+.+|+.||..||.|..|.|. .||+||+|.+..+|..|+..||+..|.|-.|.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 469999999999999999999999999999884 4699999999999999999999999999999999988654
Q ss_pred C
Q 021537 120 R 120 (311)
Q Consensus 120 ~ 120 (311)
.
T Consensus 75 ~ 75 (216)
T KOG0106|consen 75 R 75 (216)
T ss_pred c
Confidence 4
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=3.1e-09 Score=98.45 Aligned_cols=83 Identities=30% Similarity=0.661 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
..++||||+|+++++++.|..+|.+||+|..|.++.++.+ .++||+||+|++.+.+..+|.. ..+.|.|+.|.++.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 6789999999999999999999999999999999999888 8999999999999999999884 5688999999999887
Q ss_pred cCCCC
Q 021537 117 TRGRK 121 (311)
Q Consensus 117 ~~~~~ 121 (311)
++...
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76543
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.4e-09 Score=98.76 Aligned_cols=75 Identities=27% Similarity=0.466 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
..|||| +++|+..|.++|..+|+|++|+|+.+. | +.|||||.|.++.+|++||..||...|.|++|+|-|+...+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468999 899999999999999999999999999 8 99999999999999999999999999999999999886543
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1e-08 Score=91.58 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..++|+|.|||+.+++.+|+++|..||.+..+.|..++.+.+.|.|-|.|...++|..|++.++|..++|+.|.+....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.77 E-value=2.6e-08 Score=91.45 Aligned_cols=83 Identities=25% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceE--------EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr 108 (311)
...+.|||.|||.++|.+++.++|++||.|. .|+|..+..|+.+|=|.|.|-..+++.-||+.|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3457799999999999999999999999886 47888888899999999999999999999999999999999
Q ss_pred EEEEEEeccCC
Q 021537 109 VVRVSEVATRG 119 (311)
Q Consensus 109 ~l~V~~a~~~~ 119 (311)
.|+|+.|+-..
T Consensus 212 ~~rVerAkfq~ 222 (382)
T KOG1548|consen 212 KLRVERAKFQM 222 (382)
T ss_pred EEEEehhhhhh
Confidence 99999886443
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=3e-09 Score=92.01 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
....||||+||...++++.|.++|.+.|+|..|.|...+.+..+ ||||.|.++.++.-|++.|||..+.+..|.|.+-+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 44689999999999999999999999999999999988888777 99999999999999999999999999999988654
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.77 E-value=8.7e-09 Score=95.51 Aligned_cols=82 Identities=28% Similarity=0.538 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...+||||+||.++++++|+++|.+||.|..+.++.+..+ .++||+||+|.+++++.+++. ..-+.|+|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 3569999999999999999999999999999999999888 899999999999999999998 58889999999999998
Q ss_pred cCCC
Q 021537 117 TRGR 120 (311)
Q Consensus 117 ~~~~ 120 (311)
|+..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7654
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.76 E-value=6.9e-08 Score=83.88 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeC-CCC-CCceEEEEEeeChHHHHHHHHHcCCCccC---CeEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVR 111 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~ 111 (311)
..-.||||.+||.++...+|..+|..|-.-..+.|... +.+ -.+.+|||+|.+...|++|++.|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34589999999999999999999999865555544332 222 34579999999999999999999999986 88999
Q ss_pred EEEeccCCCC
Q 021537 112 VSEVATRGRK 121 (311)
Q Consensus 112 V~~a~~~~~~ 121 (311)
|++|+...+.
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999887664
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=7.1e-09 Score=102.66 Aligned_cols=79 Identities=24% Similarity=0.513 Sum_probs=73.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.+.|+|.|||+.++..+|+.+|..||.|..|.|+..... .++|||||+|-++.+|..|+..|..+-|.|+.|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 689999999999999999999999999999999987322 5799999999999999999999999999999999999964
No 79
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2e-08 Score=89.21 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc-CC--eEEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI-DG--RVVRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i-~G--r~l~V~~ 114 (311)
...+||||-|...-.|+++..+|..||.|..|.+.....+.+||+|||.|.+..+|+.||..|+|... -| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999753 33 5789999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
+...
T Consensus 98 ADTd 101 (371)
T KOG0146|consen 98 ADTD 101 (371)
T ss_pred ccch
Confidence 8653
No 80
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=8.1e-08 Score=85.83 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+...+||+|+.+.+|.++|..+|..||.|..|.|+.++.. +++||+||+|.+.+.++.||. |++..|.|..|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3445789999999999999999999999999999999999887 899999999999999999999 99999999999999
Q ss_pred EeccC
Q 021537 114 EVATR 118 (311)
Q Consensus 114 ~a~~~ 118 (311)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88765
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.70 E-value=2.8e-08 Score=93.57 Aligned_cols=77 Identities=26% Similarity=0.438 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....++|||.|||+++||+.|++-|..||.|..+.|+.. ++++| .|.|.++++|+.|+..|+|..|.|+.|.|.+
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4456789999999999999999999999999999988543 33444 8999999999999999999999999999986
Q ss_pred e
Q 021537 115 V 115 (311)
Q Consensus 115 a 115 (311)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=8.8e-08 Score=94.89 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC----CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
+.++.|||+||++.+++..|...|..||+|..|+|+..+.- ...-++||-|-+..+|++|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 34688999999999999999999999999999999886543 35569999999999999999999999999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
-|.++
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 98843
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=5.4e-08 Score=94.26 Aligned_cols=76 Identities=24% Similarity=0.415 Sum_probs=67.8
Q ss_pred ccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
++....+..+|+|-|||..+++++|..+|+.||+|..|..... ..|.+||+|.+..+|+.|+++|++..|.|+.|+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3344556789999999999999999999999999999876554 567999999999999999999999999999988
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.43 E-value=1.3e-06 Score=81.88 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=68.5
Q ss_pred CceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
...|.|.||... +|.+-|..+|+.||.|..|+|..++ +-.|+|.|.+...|+-|+..|+|+.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 678899999765 7999999999999999999999874 45899999999999999999999999999999998854
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=5.3e-07 Score=87.98 Aligned_cols=86 Identities=27% Similarity=0.553 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
.......|||++||..+++..+.+++..||.+..+.++.+..+ .++||||.+|.+......|+..|||..+++++|.|.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3455789999999999999999999999999999999988775 899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
.|.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 8865443
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=6e-07 Score=79.51 Aligned_cols=82 Identities=29% Similarity=0.633 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
...+.||+|-|.-+++.+.|-..|.+|-.....+++.++.+ +++||+||.|.+..++..|+..|+|..++.+.|.+..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44689999999999999999999999988888889988777 99999999999999999999999999999999987655
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
..+
T Consensus 268 ~wk 270 (290)
T KOG0226|consen 268 EWK 270 (290)
T ss_pred hHH
Confidence 443
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=1.4e-06 Score=76.53 Aligned_cols=72 Identities=21% Similarity=0.390 Sum_probs=63.9
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.+....+.|+|-+|+..+.+.+|.++|..+|.+....+ ..+++||+|.+.++|..||..|++..+.++.|.|
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34556789999999999999999999999999955444 2459999999999999999999999999999999
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=8.5e-06 Score=62.96 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=68.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhc--CCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccC----CeEEEE
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID----GRVVRV 112 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~----Gr~l~V 112 (311)
+||-|.|||...|.++|.+++.. .|....+.++.|..+ -+.|||||.|.+.+.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888865 477788889888776 68999999999999999999999999875 567888
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
.+|+-.+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8886543
No 89
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.25 E-value=4e-07 Score=80.79 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=76.5
Q ss_pred CcCCCCCCCCCccccCCcccchhhhhhhhhccCCCC--CCceEEEcCCCCCC-------cHHHHHHHhh-cCCceEEEEE
Q 021537 2 VCREGGRQGVSTSIVVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSA-------NEDSVRKVFD-KYGSVVAVKI 71 (311)
Q Consensus 2 ~~~~~~r~~~~~~~~~P~~~~~~~~~~~~~~~~~~~--~~~~lfVgnLp~~~-------te~~L~~~F~-~~G~I~~v~i 71 (311)
+|++|.+|+.....+..+...+..++.... ..... +. -+..++... .-++|...|. +||+|..+.|
T Consensus 26 acR~gdrcsR~h~kpt~s~t~ll~nmyq~P-~~~~~~~d~---~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~V 101 (260)
T KOG2202|consen 26 ACRHGDRCSRLHEKPTFSQTVLLKNMYQNP-ENSWERRDA---QGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNV 101 (260)
T ss_pred ccccccHHHHhhcccccchHHHHHHHHhCC-CCCchhhhh---ccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 799999999885555555555555533222 11111 11 111122111 1134445555 8999999988
Q ss_pred eeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 72 VNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 72 ~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
..+...+..|.+||.|...++|++|++.||+..|.|++|..++..
T Consensus 102 c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 102 CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 877666889999999999999999999999999999999998763
No 90
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.13 E-value=7.8e-07 Score=82.95 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.+|+|++|+..+...++.+.|..+|.|....+.... ...+|.|+|....+...|+. ++|..+.-....+....|
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 679999999999999999999999999877765332 23478899999999999998 688887744444433333
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.13 E-value=1e-05 Score=77.68 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=64.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.......|-+.+|||++|+++|.+||+.| .|..+.+... .++..|-|||+|.+++++++||+ .+-..++.+-|.|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34456777889999999999999999999 5777655542 35889999999999999999999 577788889998865
Q ss_pred e
Q 021537 115 V 115 (311)
Q Consensus 115 a 115 (311)
+
T Consensus 83 ~ 83 (510)
T KOG4211|consen 83 A 83 (510)
T ss_pred c
Confidence 5
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.08 E-value=4.9e-06 Score=76.81 Aligned_cols=86 Identities=27% Similarity=0.520 Sum_probs=75.9
Q ss_pred CCCCCCceEE-EcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 34 MTIDDESSVY-VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 34 ~~~~~~~~lf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
.......++| |++|++.++.++|+.+|..+|.|..+.++....+ ..+|||||.|.....+..|+.. +...+.+.+|.
T Consensus 179 ~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (285)
T KOG4210|consen 179 LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLR 257 (285)
T ss_pred cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccc
Confidence 3445566776 9999999999999999999999999999988877 8999999999999999999987 88899999999
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|++..+.+.
T Consensus 258 ~~~~~~~~~ 266 (285)
T KOG4210|consen 258 LEEDEPRPK 266 (285)
T ss_pred cccCCCCcc
Confidence 988876654
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.05 E-value=4.2e-06 Score=77.58 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceE--------EEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
.....+|||-+||..+++.+|.++|.+||.|. .|+|.+++.| .+++-|.|.|.+...|+.||.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999885 3667777777 89999999999999999999999999999
Q ss_pred CeEEEEEEeccCC
Q 021537 107 GRVVRVSEVATRG 119 (311)
Q Consensus 107 Gr~l~V~~a~~~~ 119 (311)
+..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886544
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.02 E-value=1.5e-05 Score=59.22 Aligned_cols=68 Identities=29% Similarity=0.409 Sum_probs=47.8
Q ss_pred ceEEEcCCCCCCcHHH----HHHHhhcCC-ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 40 SSVYVGGLPYSANEDS----VRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..|||.|||.+.+... |.+++..|| .|..| ..+.|+|-|.+.+.|..|++.|+|..+-|.+|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999988765 557777875 55554 246899999999999999999999999999999998
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 74
No 95
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=3e-05 Score=75.61 Aligned_cols=89 Identities=29% Similarity=0.403 Sum_probs=71.2
Q ss_pred hhhhhhccCCCCCCceEEEcCCCCCCcH------HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHH
Q 021537 26 NLIEERVKMTIDDESSVYVGGLPYSANE------DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (311)
Q Consensus 26 ~~~~~~~~~~~~~~~~lfVgnLp~~~te------~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~ 99 (311)
.+....+.....-...|+|.|+|---.. .-|..+|+++|+|+.+.++.+..|..+||.|++|.+..+|+.|++.
T Consensus 45 Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~ 124 (698)
T KOG2314|consen 45 DLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS 124 (698)
T ss_pred HHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh
Confidence 4444444444556789999999964322 2356889999999999999888888999999999999999999999
Q ss_pred cCCCccC-CeEEEEEE
Q 021537 100 MNGRTID-GRVVRVSE 114 (311)
Q Consensus 100 l~g~~i~-Gr~l~V~~ 114 (311)
|||..|+ .+++.|..
T Consensus 125 l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 125 LNGKRLDKNHTFFVRL 140 (698)
T ss_pred cccceecccceEEeeh
Confidence 9999886 66777753
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.97 E-value=7.2e-06 Score=71.50 Aligned_cols=65 Identities=25% Similarity=0.474 Sum_probs=55.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
-.||||.||..+++|++|+.+|..|-....++|.. +. ..+.|||+|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 46899999999999999999999998776666643 22 4569999999999999999999987653
No 97
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.91 E-value=3.5e-05 Score=74.11 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEE-EEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.....|-+.+||+.||+++|.+||+-.-.|.. |.++.+..+++.|-|||.|++.+.|+.||.. |...|+.+-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678889999999999999999998755554 5577777788999999999999999999985 777889888988655
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.87 E-value=4.6e-05 Score=66.67 Aligned_cols=78 Identities=13% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (311)
...+...||+.|||.+++.+.|..+|.+|.....|.++.. -.+.|||+|.+...|..|...+++..|- ...+.|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3566789999999999999999999999999999998876 4579999999999999999999999887 7788887
Q ss_pred Eec
Q 021537 114 EVA 116 (311)
Q Consensus 114 ~a~ 116 (311)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=3.5e-05 Score=60.61 Aligned_cols=71 Identities=21% Similarity=0.453 Sum_probs=44.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC-----ccCCeEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR-----TIDGRVVRVS 113 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~-----~i~Gr~l~V~ 113 (311)
++.|+|.+++..++.++|+.+|..||.|..|.+... -..|||-|.+.+.|+.|+..+.-. .|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357889999999999999999999999999888653 348999999999999999876544 4666666665
Q ss_pred E
Q 021537 114 E 114 (311)
Q Consensus 114 ~ 114 (311)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.84 E-value=8.8e-06 Score=79.06 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+||+-.|+-.++..+|.+||+.+|.|..|.|+.+..+ .++|.|||+|.+.+.+..||. |.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 34578999999999999999999999999999999999888 899999999999999999996 9999999999999866
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
..
T Consensus 256 Ea 257 (549)
T KOG0147|consen 256 EA 257 (549)
T ss_pred HH
Confidence 43
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=3.7e-05 Score=75.29 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=53.1
Q ss_pred HHHHHhhcCCceEEEEEeeC-CCC---CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 55 SVRKVFDKYGSVVAVKIVND-RST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 55 ~L~~~F~~~G~I~~v~i~~~-~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
+|+..+++||.|..|.|+.. ... -..|-.||+|.+.++|+.|+++|+|..|.|+.|.+.|.-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34556789999999999877 322 3678899999999999999999999999999999887643
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.74 E-value=6.5e-05 Score=69.17 Aligned_cols=78 Identities=22% Similarity=0.480 Sum_probs=61.4
Q ss_pred CceEEEcCCCCCCcHHH----H--HHHhhcCCceEEEEEeeCCCC--CCce--EEEEEeeChHHHHHHHHHcCCCccCCe
Q 021537 39 ESSVYVGGLPYSANEDS----V--RKVFDKYGSVVAVKIVNDRST--RGKC--YGFVTFGNPRSAVDAINDMNGRTIDGR 108 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~~~~~--~~kg--~aFVeF~~~~~A~~Al~~l~g~~i~Gr 108 (311)
-.-|||-+||+.+-.++ | .++|.+||.|..|.|...... ...+ -.||+|.+.++|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35679999998875554 3 489999999999887654322 1122 249999999999999999999999999
Q ss_pred EEEEEEec
Q 021537 109 VVRVSEVA 116 (311)
Q Consensus 109 ~l~V~~a~ 116 (311)
.|+..+-.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99988653
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.73 E-value=9.4e-05 Score=69.34 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=61.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC----CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...|.|.||.+.++.+++..+|.-.|.|..+.|+.+... ...-.|||.|.+...+..|.. |.++.|-++.|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 348999999999999999999999999999998764332 244589999999999988876 67777777777664
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00037 Score=67.62 Aligned_cols=73 Identities=25% Similarity=0.404 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeC--CCC--CCce---EEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND--RST--RGKC---YGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~--~~~--~~kg---~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
..+||||+||++++|+.|...|..||.|. |.++.. ..+ .++| |+|+.|+++.++...|.++.- +...+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 58899999999999999999999999865 444421 122 4677 999999999998888776532 444444
Q ss_pred EEEe
Q 021537 112 VSEV 115 (311)
Q Consensus 112 V~~a 115 (311)
+++.
T Consensus 335 f~vs 338 (520)
T KOG0129|consen 335 FKVS 338 (520)
T ss_pred EEEe
Confidence 4433
No 105
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=0.0012 Score=56.41 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
..+.|.|.+||+..+|++|++++.+-|.|....+..+ |++.|+|...++.+-||..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3578999999999999999999999999999988876 58999999999999999999877664
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00021 Score=49.01 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHH
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al 97 (311)
+.|-|.|++....+. |..+|..||+|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 467888998776654 555899999999998862 2449999999999999985
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.48 E-value=7.1e-05 Score=66.58 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=61.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC---------CCce----EEEEEeeChHHHHHHHHHcCCCc
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---------RGKC----YGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---------~~kg----~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
....||+++||+.+...-|+++|..||.|-.|.|...... .... -|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999988765332 1111 27899999999999999999999
Q ss_pred cCCeE
Q 021537 105 IDGRV 109 (311)
Q Consensus 105 i~Gr~ 109 (311)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.40 E-value=0.0011 Score=62.14 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCCCCceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+++.+.|-+|... ++-+.|..+|..||.|..|++++. ..|.|.|++.+...++.|+..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec----ccceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 45567889999999876 566779999999999999999987 4579999999999999999999999999999999
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
.+++..-
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9886543
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.40 E-value=0.00073 Score=55.78 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=53.4
Q ss_pred ccCCCCCCceEEEcCCC-----CCCcH----HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCC
Q 021537 32 VKMTIDDESSVYVGGLP-----YSANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG 102 (311)
Q Consensus 32 ~~~~~~~~~~lfVgnLp-----~~~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g 102 (311)
...-.++..||.|.-+. ..... .+|.+.|..||.|.-|+++.+ .-+|+|.+-.+|.+|+. |+|
T Consensus 20 i~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg 91 (146)
T PF08952_consen 20 ISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDG 91 (146)
T ss_dssp S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCC
T ss_pred HHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCC
Confidence 33344556677775554 11222 357788999999998888654 68999999999999998 899
Q ss_pred CccCCeEEEEEEecc
Q 021537 103 RTIDGRVVRVSEVAT 117 (311)
Q Consensus 103 ~~i~Gr~l~V~~a~~ 117 (311)
..++|+.|+|....|
T Consensus 92 ~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTP 106 (146)
T ss_dssp SEETTEEEEEEE---
T ss_pred cEECCEEEEEEeCCc
Confidence 999999999987654
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.38 E-value=0.00028 Score=72.40 Aligned_cols=81 Identities=23% Similarity=0.483 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC--eEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V 112 (311)
.....+.+||++|+.++....|..+|..||.|..|.+-. ...||||.|++...|+.|+..|-|..|+| +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 445678999999999999999999999999999887743 34599999999999999999999999986 67999
Q ss_pred EEeccCCC
Q 021537 113 SEVATRGR 120 (311)
Q Consensus 113 ~~a~~~~~ 120 (311)
.++.+...
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99866443
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.34 E-value=0.00061 Score=63.14 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=61.2
Q ss_pred CCCceEEEcCCCC----CCc-------HHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 37 DDESSVYVGGLPY----SAN-------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 37 ~~~~~lfVgnLp~----~~t-------e~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
....+|.|.||-. ..+ .++|.+-..+||.|..|.|.-. ++.|.+-|.|.+.+.|..||+.|+|..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3467888888832 233 2455666899999999988633 3789999999999999999999999999
Q ss_pred CCeEEEEEEe
Q 021537 106 DGRVVRVSEV 115 (311)
Q Consensus 106 ~Gr~l~V~~a 115 (311)
+|+.|.....
T Consensus 340 dgRql~A~i~ 349 (382)
T KOG1548|consen 340 DGRQLTASIW 349 (382)
T ss_pred cceEEEEEEe
Confidence 9999988754
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.34 E-value=0.00025 Score=65.70 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=63.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCC--ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
.-.++|||||-|.+|.++|.+.+...| .|..+++..++.. .++|||+|...+...+++.++.|...+|.|..-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 347889999999999999988887766 4556667666665 899999999999999999999999999998765553
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00056 Score=66.37 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=61.5
Q ss_pred ccCCCCCCceEEEcCCCCCCcHHHHHHHhh-cCCceEEEEEeeCC-CCCCceEEEEEeeChHHHHHHHHH
Q 021537 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99 (311)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~~~-~~~~kg~aFVeF~~~~~A~~Al~~ 99 (311)
...++++..|||||+||.-++.++|..+|. -||.|..+-|-.|+ ...++|-|=|+|.+..+-.+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 567889999999999999999999999999 69999999998884 447999999999999999999884
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.29 E-value=0.0018 Score=64.95 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=66.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceE-EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
+.|-|-|+|++++-++|.+||..|-.+- +|.+-.+..+...|-|.|.|++.++|..|...|++..|..++|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3778899999999999999999996554 56677777788999999999999999999999999999999998764
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.25 E-value=0.0012 Score=51.44 Aligned_cols=76 Identities=28% Similarity=0.436 Sum_probs=51.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEE-EeeC-------CCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeE-
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK-IVND-------RSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV- 109 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~~-------~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~- 109 (311)
...|.|-++|+. ....|..+|++||.|.... +..+ +......+..|.|.++.+|.+||. .||..|+|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888899988 4456788999999998764 1010 111244599999999999999999 5999998864
Q ss_pred EEEEEec
Q 021537 110 VRVSEVA 116 (311)
Q Consensus 110 l~V~~a~ 116 (311)
+-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466553
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.19 E-value=0.00056 Score=64.13 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=67.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCc-eE--EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGS-VV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~--~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+|-+.+||+.++.++|..||..|.. |. .|+|+.+..|++.|-|||+|.+.+.|..|....+.+.+..+.|.|-.
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 3568899999999999999999998863 33 38899998999999999999999999999999988888888888865
Q ss_pred e
Q 021537 115 V 115 (311)
Q Consensus 115 a 115 (311)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00033 Score=66.51 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeC---CCC---C--------CceEEEEEeeChHHHHHHHHHcCC
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND---RST---R--------GKCYGFVTFGNPRSAVDAINDMNG 102 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~~~---~--------~kg~aFVeF~~~~~A~~Al~~l~g 102 (311)
.+..+|.+.|||.+-.-+-|.++|..||.|+.|.|+.. +.. . .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999999888999999999999999999875 221 1 145799999999999999997754
Q ss_pred C
Q 021537 103 R 103 (311)
Q Consensus 103 ~ 103 (311)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.12 E-value=0.0013 Score=59.69 Aligned_cols=63 Identities=35% Similarity=0.444 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCceEEEEEeeCCCC--CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 54 DSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~~~~--~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+++...+.+||.|..|.|...+.- .-..-.||+|...++|.+|+-.|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467788999999999988766443 233468999999999999999999999999998877653
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.09 E-value=0.0015 Score=61.86 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=64.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe-EEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l~V~~a 115 (311)
++..+|.+.|||..+++++|+.+|..-|.++....... +.+.+|++.+.+.++|..|+..|+.+.+++. .|+|.|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 56679999999999999999999999877655433221 2455999999999999999999999999865 8999998
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 65
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.03 E-value=0.0027 Score=59.55 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=62.8
Q ss_pred CceEEEcCC--CCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-C-eEEEEEE
Q 021537 39 ESSVYVGGL--PYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-G-RVVRVSE 114 (311)
Q Consensus 39 ~~~lfVgnL--p~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-G-r~l~V~~ 114 (311)
...|.+.=| -+.+|.+-|..+....|+|..|.|... .--.|.|||++.+.|++|...|||..|. | ..|+|++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 344444434 456899999999999999999988765 2347999999999999999999999875 4 5899999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
|+|..
T Consensus 196 AkP~r 200 (494)
T KOG1456|consen 196 AKPTR 200 (494)
T ss_pred cCcce
Confidence 98854
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.01 E-value=0.00088 Score=67.09 Aligned_cols=84 Identities=18% Similarity=0.163 Sum_probs=70.3
Q ss_pred ccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEE-EEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
...+..-+.+|||..||..+++.++.++|...-.|+. |.|...+.++..+.|||.|..++.+..|+..-+.+.++.+.|
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~i 506 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRII 506 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEE
Confidence 3345566899999999999999999999998767776 777776777888999999999999999988777777888899
Q ss_pred EEEEe
Q 021537 111 RVSEV 115 (311)
Q Consensus 111 ~V~~a 115 (311)
+|.-.
T Consensus 507 rv~si 511 (944)
T KOG4307|consen 507 RVDSI 511 (944)
T ss_pred Eeech
Confidence 99754
No 122
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.95 E-value=0.00098 Score=65.67 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhc-CCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc---CCeEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVVR 111 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i---~Gr~l~ 111 (311)
....+.|||.||-.-.|.-+|+.++.. +|.|..++|-. .+-.|||.|.+.++|.+.+.+|||..+ +++.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 345789999999999999999999994 66666664322 466899999999999999999999876 678899
Q ss_pred EEEec
Q 021537 112 VSEVA 116 (311)
Q Consensus 112 V~~a~ 116 (311)
|.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 99874
No 123
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.73 E-value=0.0014 Score=65.51 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=66.5
Q ss_pred hccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 31 ~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
....+..+..+|||+||...+..+-+..++..||-|..+.... |||++|.....+..|+..++-..++|..|
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 3345667789999999999999999999999999998876643 99999999999999999999999999988
Q ss_pred EEEE
Q 021537 111 RVSE 114 (311)
Q Consensus 111 ~V~~ 114 (311)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 7764
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0013 Score=67.33 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
-..|||.|+|+..|.++|+.+|.++|.++.+.++..+.++++|-|||.|.++.++..++..+++..+.-..+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4678999999999999999999999999999999999999999999999999999999998888888877777777655
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.21 E-value=0.004 Score=58.56 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC----CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKY----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
-.|-..+||+++++.++..||..- |.+..|-++..+.++..|-|||.|..+++|+.||.+ |...|+-+-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 345568999999999999999632 355567677777889999999999999999999985 655666665543
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.15 E-value=0.0018 Score=59.95 Aligned_cols=78 Identities=31% Similarity=0.530 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCc-HHHHH--HHhhcCCceEEEEEeeCCC--C--CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 40 SSVYVGGLPYSAN-EDSVR--KVFDKYGSVVAVKIVNDRS--T--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 40 ~~lfVgnLp~~~t-e~~L~--~~F~~~G~I~~v~i~~~~~--~--~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.-+||-+|+..+. +..|+ ..|.+||.|..|.+..+.. . -..+-++|+|...++|..||...+|..+.|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 5578888887754 44454 7799999999998887652 1 24456999999999999999999999999999877
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
.+..+
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66543
No 127
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.10 E-value=0.029 Score=39.63 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=44.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcC---CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKY---GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l 100 (311)
+.+|+|.|+. +++.++|+.+|..| .....|.++.+. -|-|.|.+...|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4689999986 57888999999998 234578888773 6889999999999999864
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0026 Score=65.54 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=66.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
...+.+||+|||+..+++.+|...|..+|.|..|.|-..+-+....||||.|.+...+-.|+..+.+..|..-.+++.+-
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34468999999999999999999999999999999876544444569999999999999999999988876545544433
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=0.00065 Score=69.43 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=60.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCC-CCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
..++||.||+..+.+.+|...|..+|.|..+.+.... .++.+|+|||+|...+++.+||....++.++-..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 4688999999999999999999999988877766333 3378999999999999999999976666666434433
No 130
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.86 E-value=0.0096 Score=53.30 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
..|||.||+.-++.+.|...|..||+|....++.+..+++.+-++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 68999999999999999999999999998888888777888899999999999999998764
No 131
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.83 E-value=0.052 Score=40.56 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
...+||+ +|.+....+|.++|+.||.|. |.++.+ .-|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 4566676 999999999999999999986 444443 389999999999999998775
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.51 E-value=0.056 Score=49.56 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
.=|-|-++|+.. ...|..+|.+||.|+...... .-.|-+|-|.+.-+|++||. .+|..|+|-.+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 345556777653 456788999999999875542 23499999999999999999 59999988653
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.34 E-value=0.016 Score=55.34 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC--CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc-cCCeEEEEEEec
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVSEVA 116 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~-i~Gr~l~V~~a~ 116 (311)
..+|++||.+.++..+|..+|... +--..+.| ..||+||.+.+..-|.+|++.++|.. +.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999754 22122222 35799999999999999999999874 789999998875
Q ss_pred cC
Q 021537 117 TR 118 (311)
Q Consensus 117 ~~ 118 (311)
++
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.27 E-value=0.1 Score=42.97 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCCceEEEcCCCCCCcH----HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 37 DDESSVYVGGLPYSANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.+-.||.|.=|..++.. ..|...++.||+|.+|.++ .+-.|.|+|.+..+|-.|+.+++. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 34577888766665432 3355667899999999886 345899999999999999998875 666777887
Q ss_pred EEec
Q 021537 113 SEVA 116 (311)
Q Consensus 113 ~~a~ 116 (311)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7643
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.10 E-value=0.13 Score=37.46 Aligned_cols=67 Identities=18% Similarity=0.391 Sum_probs=39.7
Q ss_pred eEEEc-CCCCCCcHHHHHHHhhcCC-----ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 41 SVYVG-GLPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 41 ~lfVg-nLp~~~te~~L~~~F~~~G-----~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
+|||. +--..++..+|..+|...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|++|.|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 45551 2234578888988887764 4557777554 99998764 578999999999999999999987
Q ss_pred e
Q 021537 115 V 115 (311)
Q Consensus 115 a 115 (311)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 136
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.84 E-value=1 Score=46.43 Aligned_cols=61 Identities=5% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHhhcCCceE-----EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 48 PYSANEDSVRKVFDKYGSVV-----AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 48 p~~~te~~L~~~F~~~G~I~-----~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
-..++..+|-.++..-+.|. .|.|..+ |.||+... ..|...+..|++..+.|+.|.|+.+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 34578888888777655443 4566443 89999864 55788889999999999999999875
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.79 E-value=0.039 Score=53.43 Aligned_cols=69 Identities=14% Similarity=0.269 Sum_probs=55.8
Q ss_pred EEcCCCCCC-cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 43 YVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 43 fVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
-+.-+|+.+ +-.+|...|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|-|..+
T Consensus 376 ~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 376 ALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 333345544 45789999999999999988654 3379999999999988877 699999999999999876
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.52 E-value=0.23 Score=42.99 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=46.0
Q ss_pred cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC--CCccCCeEEEEEEeccC
Q 021537 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVSEVATR 118 (311)
Q Consensus 52 te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~V~~a~~~ 118 (311)
....|+.+|..|+.+..+.++.. -+=..|.|.+.+.|..|...|+ +..+.|..|+|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999998877653 3468899999999999999999 99999999999988543
No 139
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.81 E-value=0.15 Score=43.86 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhc-CCce---EEEEEeeCCCC---CCceEEEEEeeChHHHHHHHHHcCCCccCC---
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDK-YGSV---VAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--- 107 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~~~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G--- 107 (311)
....|.|.+||+.+|++++...+.. ++.. ..+.-...... ..-.-|||.|.+.+++...+..++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999998886665 6655 23331122211 223469999999999999999999977632
Q ss_pred --eEEEEEEec
Q 021537 108 --RVVRVSEVA 116 (311)
Q Consensus 108 --r~l~V~~a~ 116 (311)
....|++|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 234566664
No 140
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.29 E-value=1.4 Score=34.79 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=48.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC-CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
..+.+...|+.++.++|..+.+.+ ..|..++|+++.. ..+-.+.|.|.+...|......+||..++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444555556666776665555 4566788887633 356689999999999999999999998763
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.10 E-value=0.14 Score=52.89 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=61.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc--CCeEEEEEEeccC
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--DGRVVRVSEVATR 118 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i--~Gr~l~V~~a~~~ 118 (311)
+.++-|.+-..+..-|..+|.+||.|..++...+- ..|.|+|...+.|..|+.+|+|..+ .|-+.+|.+|++-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34455556677788899999999999999887652 3899999999999999999999874 5888999998764
Q ss_pred C
Q 021537 119 G 119 (311)
Q Consensus 119 ~ 119 (311)
+
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 142
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=0.54 Score=46.84 Aligned_cols=82 Identities=15% Similarity=0.292 Sum_probs=62.2
Q ss_pred CCCCCCceEEEcCCCCC-CcHHHHHHHhhcC----CceEEEEEeeCCCCC----------C-------------------
Q 021537 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRSTR----------G------------------- 79 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~~~~----------~------------------- 79 (311)
.....+..|-|.|+.|+ +...+|.-+|..| |.|.+|.|.....|+ +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567889999999997 6888999888776 689999876533210 1
Q ss_pred ------------------c-eEEEEEeeChHHHHHHHHHcCCCccCCe--EEEEEEe
Q 021537 80 ------------------K-CYGFVTFGNPRSAVDAINDMNGRTIDGR--VVRVSEV 115 (311)
Q Consensus 80 ------------------k-g~aFVeF~~~~~A~~Al~~l~g~~i~Gr--~l~V~~a 115 (311)
+ =||.|+|.+...|...+..++|+.|... .|-+.|.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 2799999999999999999999998754 4444443
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.40 E-value=0.31 Score=48.17 Aligned_cols=81 Identities=11% Similarity=0.276 Sum_probs=52.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhh-cCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCcc---C-CeEEEEE
Q 021537 40 SSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---D-GRVVRVS 113 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i---~-Gr~l~V~ 113 (311)
+++-|.|+|...|...|...-. ..|.-..+.++.|-.. ...|||||.|.+++++..+.+++||+.+ + .+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3444444444444333332222 2455556667766555 5789999999999999999999999864 3 4566777
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
||.-.+.
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 7754433
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.97 E-value=0.1 Score=48.26 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...++||+++.+.+.+.++..+|..+|.+..+.+...... .++++++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4688999999999999989999999998887776654444 789999999999999999999544446666666555544
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
.
T Consensus 167 ~ 167 (285)
T KOG4210|consen 167 R 167 (285)
T ss_pred c
Confidence 3
No 145
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.26 E-value=0.65 Score=46.11 Aligned_cols=68 Identities=16% Similarity=0.325 Sum_probs=53.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhc--CCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCC--CccCCeEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVVRV 112 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g--~~i~Gr~l~V 112 (311)
.+.|.+.-||..+-.++|+.+|.. |-++..|.+..+. -=||+|++..+|+.|.+.|.- .+|-|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 467788999999999999999975 7788888876542 469999999999999876643 3466766643
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.04 E-value=1.6 Score=42.34 Aligned_cols=68 Identities=12% Similarity=0.300 Sum_probs=57.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcC-CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
...|+|-.+|..++..+|..|+..| -.|..|.|+++... .+=.++|.|.+..+|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998875 46788999985332 44468999999999999999999998874
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.93 E-value=2.7 Score=30.01 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=42.9
Q ss_pred CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 50 SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 50 ~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.++.++|+..+.+|+- . .|..++ .| -||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999964 2 233442 23 479999999999999999999888877765
No 148
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=81.11 E-value=3.9 Score=41.04 Aligned_cols=8 Identities=0% Similarity=0.439 Sum_probs=4.2
Q ss_pred cccccccc
Q 021537 256 VDDHQLRE 263 (311)
Q Consensus 256 ~~~~~~~~ 263 (311)
.++..+.|
T Consensus 706 ak~qGI~D 713 (757)
T KOG4368|consen 706 AKEQGIQD 713 (757)
T ss_pred cccccccC
Confidence 44555555
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.10 E-value=1.6 Score=37.41 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCceEEEcCCCCCCcH-----HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe-EEE
Q 021537 38 DESSVYVGGLPYSANE-----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVR 111 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te-----~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l~ 111 (311)
-.+++++++|+..+.. .....+|.+|-+...+.++. +.++.-|.|.+...|..|...++...|.|+ .|+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3567888888876532 23456677776666555544 456778999999999999999999999998 788
Q ss_pred EEEeccC
Q 021537 112 VSEVATR 118 (311)
Q Consensus 112 V~~a~~~ 118 (311)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777653
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.26 E-value=4.8 Score=36.98 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=35.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceE-EEEEeeCCCCCCceEEEEEeeChH
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPR 91 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~~~kg~aFVeF~~~~ 91 (311)
.+-|||+|||.++...+|+..+.+.|-+- .+.+.- +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 35699999999999999999999876543 333322 4567999996543
No 151
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=76.99 E-value=2.4 Score=39.62 Aligned_cols=11 Identities=0% Similarity=0.326 Sum_probs=6.0
Q ss_pred CceEEEEEeeC
Q 021537 79 GKCYGFVTFGN 89 (311)
Q Consensus 79 ~kg~aFVeF~~ 89 (311)
.-||-||-|..
T Consensus 159 alGFmYiRYtq 169 (453)
T KOG2888|consen 159 ALGFMYIRYTQ 169 (453)
T ss_pred hheeeEEeecC
Confidence 34566666643
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.41 E-value=6.2 Score=31.47 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=29.5
Q ss_pred ceEEEcCCCCC---------CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeC-hHHHHHHHH
Q 021537 40 SSVYVGGLPYS---------ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAIN 98 (311)
Q Consensus 40 ~~lfVgnLp~~---------~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~-~~~A~~Al~ 98 (311)
.++.|-|++.. .+.+.|.+.|..|.++. |..+.+..+ +.|+++|+|.. -.-...|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChHHHHHHHH
Confidence 35556666443 34578999999998876 444444443 67899999974 444555554
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=71.60 E-value=0.2 Score=47.98 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=62.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEee-CCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN-DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~-~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...+-|.|+|+...++.|..++.+||.|..|..+. +.. ....-|+|...+.+..||..|+|..|....++|.|..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 45688999999999999999999999999886643 222 2345578999999999999999999999999998764
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.94 E-value=1.1 Score=39.52 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=59.5
Q ss_pred CCCceEEEcC----CCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 37 DDESSVYVGG----LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 37 ~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
..-.+++.|+ |...++++.+...|+.-|+|..+.+..+..+.+..++|+++.-....-.|+....+..+--+++
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 3346777888 7778899999999999999999999988888888899999998888888888766655444333
No 155
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=69.63 E-value=3.4 Score=38.67 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=8.6
Q ss_pred CCcHHHHHHHhhcC
Q 021537 50 SANEDSVRKVFDKY 63 (311)
Q Consensus 50 ~~te~~L~~~F~~~ 63 (311)
.....+|...|+.|
T Consensus 168 tqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 168 TQPPADLWDWYEPY 181 (453)
T ss_pred cCChhHHHHHhhhh
Confidence 34456677777666
No 156
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.45 E-value=5 Score=36.76 Aligned_cols=71 Identities=24% Similarity=0.491 Sum_probs=45.5
Q ss_pred CCCCCceEEEcCCCCC------------CcHHHHHHHhhcCCceEEEEEee-CC---------CC-CCceEE--------
Q 021537 35 TIDDESSVYVGGLPYS------------ANEDSVRKVFDKYGSVVAVKIVN-DR---------ST-RGKCYG-------- 83 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~------------~te~~L~~~F~~~G~I~~v~i~~-~~---------~~-~~kg~a-------- 83 (311)
+...+-|||+.+||-. .++.-|...|..||.|..|.|+. ++ .| ...||+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 4455678999988742 35667999999999999887753 22 12 234454
Q ss_pred -EEEeeChHHHHHHHHHcCCCcc
Q 021537 84 -FVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 84 -FVeF~~~~~A~~Al~~l~g~~i 105 (311)
||.|........|+..|.|..+
T Consensus 225 ayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchH
Confidence 3555555555566666666543
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.38 E-value=16 Score=33.83 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=58.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCC--------CCCCceEEEEEeeChHHHHHHHH----HcCC--Cc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--------STRGKCYGFVTFGNPRSAVDAIN----DMNG--RT 104 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~--------~~~~kg~aFVeF~~~~~A~~Al~----~l~g--~~ 104 (311)
+..|.+.||...++-..+...|.+||+|..|.++.+. ..+......+.|-+.+.|..... .|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999889888888999999999999999775 11345688899999888765432 2221 34
Q ss_pred cCCeEEEEEEec
Q 021537 105 IDGRVVRVSEVA 116 (311)
Q Consensus 105 i~Gr~l~V~~a~ 116 (311)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667778887775
No 158
>PHA01750 hypothetical protein
Probab=63.31 E-value=20 Score=25.43 Aligned_cols=31 Identities=32% Similarity=0.253 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
++..+-++.++++..++.|+++++||++-+-
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4556667888888888889999999987653
No 159
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.82 E-value=21 Score=25.18 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCceEEEEEeeC
Q 021537 54 DSVRKVFDKYGSVVAVKIVND 74 (311)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~ 74 (311)
.+|+++|+..|.|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 578999999999987766543
No 160
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=60.76 E-value=19 Score=27.94 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+......+..+..++.+|+.+|.+|+.-||.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFe 33 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFE 33 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788899999999999999999999884
No 161
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=59.45 E-value=28 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.++|.+-|.|+..-.|||-+|.+|-+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777777778877777754
No 162
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.79 E-value=22 Score=34.27 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCce-EEEEEeeCCCCCCceEEEEEeeChHHHHHHHH
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~ 98 (311)
.+-...|-|-++|.....++|...|+.|+.- ..|.|+-+ ..||-.|.+...|..||-
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 3446888999999998889999999999653 34555544 279999999999999987
No 163
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=58.73 E-value=84 Score=27.06 Aligned_cols=13 Identities=31% Similarity=0.278 Sum_probs=7.1
Q ss_pred CCceEEEcCCCCC
Q 021537 38 DESSVYVGGLPYS 50 (311)
Q Consensus 38 ~~~~lfVgnLp~~ 50 (311)
+-..|||.--|+.
T Consensus 36 ~lrsvWvArnPPG 48 (195)
T KOG0107|consen 36 PLRSVWVARNPPG 48 (195)
T ss_pred cceeEEEeecCCC
Confidence 4456666554443
No 164
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=58.37 E-value=24 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 274 DQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.++..++..+++++++..+|..||+-+.+|-.|...
T Consensus 56 ~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 56 QKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577888899999999999999999999888654
No 165
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=58.36 E-value=49 Score=30.81 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=4.5
Q ss_pred EEeeChHHH
Q 021537 85 VTFGNPRSA 93 (311)
Q Consensus 85 VeF~~~~~A 93 (311)
|.|.+.++-
T Consensus 109 LnydT~Esk 117 (335)
T KOG0113|consen 109 LNYDTSESK 117 (335)
T ss_pred ccccccHHH
Confidence 456555543
No 166
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.55 E-value=24 Score=25.44 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHhhcCC-ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 54 ~~L~~~F~~~G-~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.+|.+.|...| +|..|..+....+ .+...-||+.....+... .|+-..|+|.++.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777788877 6777877777666 455677788776554444 355578999998887543
No 167
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=57.33 E-value=93 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=16.2
Q ss_pred EEEeeChHHHHHHHH--HcCCCcc
Q 021537 84 FVTFGNPRSAVDAIN--DMNGRTI 105 (311)
Q Consensus 84 FVeF~~~~~A~~Al~--~l~g~~i 105 (311)
|-.=.+.++|..||. .|+|.+|
T Consensus 62 f~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 62 FHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred eeecchHHHHHHhhcceeecccee
Confidence 334467888998886 6788887
No 168
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.15 E-value=11 Score=32.59 Aligned_cols=65 Identities=20% Similarity=0.440 Sum_probs=45.6
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHH
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~ 98 (311)
........+++.+++..++...+..+|..+|.+..+.+...... ....+.++.+.....+..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 34556789999999999999999999999999977777665444 344444444444444444433
No 169
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=56.65 E-value=33 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhhcC----CceEEEEEee
Q 021537 36 IDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVN 73 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~ 73 (311)
.+++..|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 566789999999986 6788999888775 6777777643
No 170
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=55.87 E-value=46 Score=31.42 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=3.4
Q ss_pred CcHHHHHH
Q 021537 51 ANEDSVRK 58 (311)
Q Consensus 51 ~te~~L~~ 58 (311)
+++.+|..
T Consensus 213 ~~k~eid~ 220 (367)
T KOG0835|consen 213 TTKREIDE 220 (367)
T ss_pred CcHHHHHH
Confidence 44444433
No 171
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=55.42 E-value=2.1 Score=42.65 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=56.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
-..++|||.|++++++-.+|..++..+-.+..+.+.....- ...-+++|+|.---....|+-+||+..+.-..+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 44689999999999999999999998876666655433222 345588999988778888888888877765544
No 172
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.00 E-value=37 Score=24.29 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=41.2
Q ss_pred HHHHHHhhcCC-ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 54 ~~L~~~F~~~G-~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
++|.+.|...| .|..|.-+....+ .+...-||+.+...+...+ ++-..|++..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 35666676666 6777776666644 5666888888776654444 455788999988886543
No 173
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=52.68 E-value=23 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
++|+.+|+++.+|..++..||+.|=++-
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~E 29 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKE 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999997764
No 174
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=51.22 E-value=15 Score=31.88 Aligned_cols=9 Identities=44% Similarity=0.755 Sum_probs=4.0
Q ss_pred HHHHhhcCC
Q 021537 56 VRKVFDKYG 64 (311)
Q Consensus 56 L~~~F~~~G 64 (311)
|.+++.++|
T Consensus 39 vld~a~~~g 47 (188)
T TIGR00162 39 IIDVAKKYG 47 (188)
T ss_pred HHHHHHHcC
Confidence 334444444
No 175
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=51.19 E-value=19 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
++++|+.|+.++|++|..|...|.
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~ 53 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLA 53 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888887764
No 176
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=49.05 E-value=18 Score=37.43 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=4.9
Q ss_pred EEEEeeChHH
Q 021537 83 GFVTFGNPRS 92 (311)
Q Consensus 83 aFVeF~~~~~ 92 (311)
+||.|.++..
T Consensus 695 ~~~k~~de~~ 704 (877)
T KOG0151|consen 695 NPVKYDDEDR 704 (877)
T ss_pred cccccchhhh
Confidence 5555544433
No 177
>PRK00846 hypothetical protein; Provisional
Probab=48.75 E-value=36 Score=25.11 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+.++.|+.+|..|.++||++.
T Consensus 41 ~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 41 LTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777777765
No 178
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.65 E-value=53 Score=22.80 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+-...+.|..+...|+..+..|...+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444
No 179
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=48.24 E-value=44 Score=23.39 Aligned_cols=31 Identities=39% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+...+++|.+||..|..++|+|.-++..+.
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5677789999999999999999998887654
No 180
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=46.97 E-value=38 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Q 021537 284 QRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
..++.|++||.+.++.|++|..-
T Consensus 76 ~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 76 KLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555566777666543
No 181
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=46.41 E-value=68 Score=21.52 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 282 SIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
+-++...|..++.+|+.+|..|..
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 335555566666666666665553
No 182
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=46.37 E-value=2.8e+02 Score=28.63 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=15.2
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEe
Q 021537 40 SSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIV 72 (311)
Q Consensus 40 ~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~ 72 (311)
..|.|-+++.+ ++..--.+.+.++|++..|.|.
T Consensus 62 rvvMVNGvsMenv~haFAvQqLrksgK~A~Itvk 95 (1027)
T KOG3580|consen 62 RVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVK 95 (1027)
T ss_pred eEEEEcCcchhhhHHHHHHHHHHhhccceeEEec
Confidence 44455554432 2333333444555655555543
No 183
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=45.82 E-value=10 Score=39.76 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=5.6
Q ss_pred CCceEEEcCCC
Q 021537 38 DESSVYVGGLP 48 (311)
Q Consensus 38 ~~~~lfVgnLp 48 (311)
....+|+|++.
T Consensus 144 ~~qR~f~gvvt 154 (1194)
T KOG4246|consen 144 EPQRRFAGVVT 154 (1194)
T ss_pred Ccceeeehhhh
Confidence 34555665543
No 184
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=44.59 E-value=12 Score=37.26 Aligned_cols=19 Identities=16% Similarity=-0.061 Sum_probs=11.1
Q ss_pred HHHhhhhHHHHHHHHHHhh
Q 021537 289 LKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ 307 (311)
..-+-+++++.|+.|.-.|
T Consensus 593 ~r~~~qeredeLr~~a~kl 611 (653)
T KOG2548|consen 593 HRIITQEREDELRIYAMKL 611 (653)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344456777777766544
No 185
>PF14182 YgaB: YgaB-like protein
Probab=44.58 E-value=33 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.....+..||.+|+..||++-.+.+
T Consensus 40 a~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 40 AELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999987654
No 186
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=44.41 E-value=45 Score=25.13 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=31.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEee
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~ 88 (311)
..-||||+++..+-+.-...+....+.-..+-+... .+ ..||+|-++-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC-CCCEEEEEeC
Confidence 457999999988877766666665544333333332 22 6789998873
No 187
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=44.14 E-value=26 Score=34.93 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+.+...|++||+-.|++||.|+.||+.+
T Consensus 409 ~~~l~~lt~~~~~~ee~l~~Lt~~l~~l 436 (543)
T COG1315 409 VERLKELTEEISLHEERLKKLTKLLVAL 436 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777889999999999999999999854
No 188
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.96 E-value=47 Score=22.93 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=6.1
Q ss_pred HHHhhhhHHHHHHHH
Q 021537 289 LKKEVCPLKFELKEM 303 (311)
Q Consensus 289 ~~~~~~~~~~~~~~~ 303 (311)
|..+|+||...++.|
T Consensus 15 L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 15 LNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 189
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=42.94 E-value=23 Score=27.69 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=8.5
Q ss_pred HHHHHhhhhHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEM 303 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (311)
..|+.+.++||+++.++
T Consensus 55 qkL~eqteeLK~kvqe~ 71 (106)
T PF12443_consen 55 QKLGEQTEELKDKVQEF 71 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555544
No 190
>PRK14127 cell division protein GpsB; Provisional
Probab=42.30 E-value=54 Score=25.87 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+..+.+..+|+.|+..|+++|.+|..-+
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444566666666666666666665533
No 191
>PRK09458 pspB phage shock protein B; Provisional
Probab=42.13 E-value=43 Score=24.51 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+.-.+++++|......|+++++.|-..|.
T Consensus 38 ~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 38 QEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788888999999999999988874
No 192
>smart00338 BRLZ basic region leucin zipper.
Probab=41.82 E-value=68 Score=22.28 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
..-++|..+|.+|+..+..|+..|
T Consensus 40 ~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 40 AENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666777777777777666554
No 193
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.52 E-value=17 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.2
Q ss_pred HHHHHhhhhHHHHHHHHHHh
Q 021537 287 EELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~ 306 (311)
|.|+..|..|||++..|.+.
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 56788889999998888764
No 194
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=40.87 E-value=54 Score=23.97 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+.++.+--+|+.+|..|+..|++++++|...
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555578999999999999988888653
No 195
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=40.77 E-value=43 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
++.+.++.+.++.+|.+.+.+++.|.+-+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~ 31 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRK 31 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666665543
No 196
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.71 E-value=48 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.++.+.+..+|..|+.++++|..|+.+|
T Consensus 80 ~~~~~~l~~~i~~Le~~l~~L~~~~~~l 107 (134)
T cd04779 80 AQEVQLVCDQIDGLEHRLKQLKPIASQT 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888877664
No 197
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=39.68 E-value=69 Score=21.34 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
+.+|....+++.++.+.+.++++|...+-+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~ 32 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDN 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777788888888888888876643
No 198
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.04 E-value=57 Score=32.10 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 273 SDQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.++.+...++++....|..++.+|+++|++|..+|+.+
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566778888888999999999999999999998865
No 199
>PHA02109 hypothetical protein
Probab=38.89 E-value=51 Score=28.15 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 021537 274 DQVKELDRSIQRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
+..++.-.+.-++|.|..|++|++.||..|...
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAE 222 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566678999999999999999877543
No 200
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=38.89 E-value=45 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=24.4
Q ss_pred ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC
Q 021537 65 SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (311)
Q Consensus 65 ~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~ 103 (311)
.|.++..+.+ .+||-|||=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4555555443 7899999999999999999877653
No 201
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.43 E-value=47 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
++++.|+.+|..|.++|++|.
T Consensus 32 ~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 32 RQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555543
No 202
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=37.95 E-value=54 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
-.+++++|..+...|+++++.|-..|-
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357788889999999999999988773
No 203
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.93 E-value=86 Score=22.00 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+..+=.+..+|..+|..|++++.+|.+
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555557888888899999988888753
No 204
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=37.13 E-value=41 Score=26.80 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
-=.|.|.+||.+||+-+++|.-||-.
T Consensus 98 vflEkLE~EvreLEQlV~DLE~WLDa 123 (135)
T PF15466_consen 98 VFLEKLEKEVRELEQLVRDLEEWLDA 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999864
No 205
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=36.97 E-value=21 Score=32.04 Aligned_cols=37 Identities=11% Similarity=0.381 Sum_probs=30.4
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK 70 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~ 70 (311)
.....-.+||+-|||..+|++.|..+.+++|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3445567999999999999999999999998665544
No 206
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.96 E-value=44 Score=28.80 Aligned_cols=36 Identities=22% Similarity=0.078 Sum_probs=28.7
Q ss_pred CceEEEEEeeCCCC--CCceEEEEEeeChHHHHHHHHH
Q 021537 64 GSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAIND 99 (311)
Q Consensus 64 G~I~~v~i~~~~~~--~~kg~aFVeF~~~~~A~~Al~~ 99 (311)
|.+..|.+-..... ..+|-.||+|.+.+.|.+.++.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 78888887655444 4788999999999999987764
No 207
>PRK04325 hypothetical protein; Provisional
Probab=36.84 E-value=69 Score=23.28 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
++++.|+.++..|.++|+++.
T Consensus 37 ~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 37 QTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666666653
No 208
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=36.72 E-value=93 Score=24.13 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHhhhhHHHHH
Q 021537 289 LKKEVCPLKFEL 300 (311)
Q Consensus 289 ~~~~~~~~~~~~ 300 (311)
.++||+++++.|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444444444443
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.25 E-value=70 Score=29.18 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
++++++|+.||..|.=.|.++.+=|.+|
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3677777777777777777777666654
No 210
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=79 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+...|.++..-+.++|++|..+|+.|
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888999999999998865
No 211
>PRK00295 hypothetical protein; Provisional
Probab=35.46 E-value=87 Score=22.32 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+.++.|..+|..|.++|+++.
T Consensus 33 ~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 33 RVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445666666666666666653
No 212
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=35.30 E-value=69 Score=31.64 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
++..-+.-++-|+|..+|..||++|+.|+.-|.+.
T Consensus 433 yd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~ 467 (489)
T KOG3684|consen 433 YDLLQELHSRQEELEKQIDTLESKLEALTASLSSL 467 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444778999999999999999999887654
No 213
>PF15456 Uds1: Up-regulated During Septation
Probab=35.13 E-value=1e+02 Score=24.86 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 268 SSDDNSDQVKELDRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 268 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+.+...++.+.+..+..+.|++..++-+++.++.++-.-|
T Consensus 72 ~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 72 SRESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557777899999999999999999999999886554
No 214
>PRK00736 hypothetical protein; Provisional
Probab=35.10 E-value=79 Score=22.55 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.++.|..+|..|.++|+++
T Consensus 33 ~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 33 KTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666654
No 215
>PRK02119 hypothetical protein; Provisional
Probab=34.57 E-value=87 Score=22.68 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+.++.|+.++..|.++|+++.
T Consensus 37 ~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 37 FVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 445666666666666666543
No 216
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.82 E-value=71 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+..-+++++|+.+|.+++.-.++|+-+|.+|
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333777788888888888888888877776
No 217
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=33.59 E-value=47 Score=24.39 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=8.5
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 021537 288 ELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~ 305 (311)
.|+.+|.-+|.+|++++.
T Consensus 11 ~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 11 RLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444443
No 218
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=33.57 E-value=74 Score=28.64 Aligned_cols=40 Identities=10% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 268 SSDDNSDQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 268 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.|.+++.. .++....+..+++.++.+|+++-++|..|+..
T Consensus 22 ~A~E~~r~--~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~ 61 (236)
T PF12269_consen 22 VAEEQNRK--LLEEIRKKQQKVRNRLQELEKRFKELEAIIAR 61 (236)
T ss_pred hhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555544 77777788889999999999999999998864
No 219
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.46 E-value=73 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
|..++.+.+|..+|..|+..|.+|++-+.
T Consensus 102 e~~~~e~~elr~~~~~l~~~i~~~~~~~~ 130 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLENAIAELTKFFS 130 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 220
>PRK04406 hypothetical protein; Provisional
Probab=33.20 E-value=94 Score=22.67 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.++.|+.+|..|.++|+++
T Consensus 39 ~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 39 LLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555444
No 221
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=33.09 E-value=86 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.++.+|..||.+++..+..|.++|
T Consensus 80 ~~~~~l~~~i~~l~~~~~~l~~~~ 103 (103)
T cd01106 80 EQKELLEEKKERLDKLIKTIDRTL 103 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555555555555555555543
No 222
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.59 E-value=1e+02 Score=20.17 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
-..-+.|..|...|..+|..|+..|++
T Consensus 18 k~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 18 KAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355667777888888888888877764
No 223
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=32.57 E-value=63 Score=22.61 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=25.5
Q ss_pred hHHHHHHHHH--------HHHHHHHHhhhhHHHHHHHHHH
Q 021537 274 DQVKELDRSI--------QRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 274 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.++..++++| ..+..|-.||..|+.+-++|+-
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 4566788888 5677888999999999988863
No 224
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.55 E-value=48 Score=18.57 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=8.7
Q ss_pred HHHHHHhhhhHHHHHHH
Q 021537 286 REELKKEVCPLKFELKE 302 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (311)
++.|+..|+-||.+|.+
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 225
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.65 E-value=1.1e+02 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.++.|..+|..|.++|+++
T Consensus 36 ~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 36 MEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555554
No 226
>PF14893 PNMA: PNMA
Probab=31.55 E-value=43 Score=31.72 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=36.3
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhc-CCceEEEEEeeC--CCCCCceEEEEEeeChHH
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVND--RSTRGKCYGFVTFGNPRS 92 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~--~~~~~kg~aFVeF~~~~~ 92 (311)
+.++.-..|.|.+||.++++.+|++.+.. +-++-...|... ........|+|+|...-+
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 45666788999999999999999877643 222222333221 011123478898875433
No 227
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=31.44 E-value=88 Score=23.91 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+..+.++|..+|..|+..++.|..||
T Consensus 76 l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 76 LEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777777777776
No 228
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.38 E-value=49 Score=31.76 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=44.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceE-EEEEeeCCCC---CCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
...|.|.+||+..++.+|.+....|-.=+ ...+.....+ +.-+.|||.|...++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 35778899999999988877666543211 1222212222 2346789999999998888888888764
No 229
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.25 E-value=86 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
|+.|+|..||..|+.|=+.|+.
T Consensus 19 qkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 19 QKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999888864
No 230
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=30.94 E-value=36 Score=24.80 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhh
Q 021537 296 LKFELKEMVHMLFT 309 (311)
Q Consensus 296 ~~~~~~~~~~~~~~ 309 (311)
|+++|++|..||++
T Consensus 52 lk~~L~~l~~~i~~ 65 (78)
T PF08331_consen 52 LKKKLEQLAEWIRE 65 (78)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666654
No 231
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.49 E-value=2.4e+02 Score=21.39 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=38.2
Q ss_pred ceEEEcCCCCCCcHHHHHHH-------hhcC-CceEEEEEeeC------CCCCCce-EEEEEeeChHHHHHHHHHcCCCc
Q 021537 40 SSVYVGGLPYSANEDSVRKV-------FDKY-GSVVAVKIVND------RSTRGKC-YGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~-------F~~~-G~I~~v~i~~~------~~~~~kg-~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
-++|| |.++++++++..+ +... |.|..+..+-. -.....| |.++.|....++.+.++.. ..
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~--lr 84 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA--LK 84 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH--hC
Confidence 35565 4566666665544 4443 46666653221 1123445 6889999888877777632 34
Q ss_pred cCCeEEE
Q 021537 105 IDGRVVR 111 (311)
Q Consensus 105 i~Gr~l~ 111 (311)
++...|+
T Consensus 85 i~e~VlR 91 (97)
T CHL00123 85 LDENVLR 91 (97)
T ss_pred CCCCeEE
Confidence 4544443
No 232
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.45 E-value=1.4e+02 Score=24.16 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=24.9
Q ss_pred hhHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 273 SDQVKEL-DRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 273 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.++.++. +.+-...+.|.+++.-|+-.+.+|+.+|-
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 23336678888888888888889998885
No 233
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.34 E-value=1e+02 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..++.++|..+...|+++++.|-..|-
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 346667888889999999999988764
No 234
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.13 E-value=1.4e+02 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
...-++..+|+.|+..|+.|..-|..|
T Consensus 25 ~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 25 DVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566778888888888888877655
No 235
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.91 E-value=94 Score=26.57 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
++..+...|+++++.|+-+||+|-++|-|
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 33355667888999999999999998854
No 236
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.86 E-value=94 Score=22.06 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
+.+.+..+.++++.++..|+.+++.|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666666666666666
No 237
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=29.85 E-value=1.6e+02 Score=29.58 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhh----cCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~----~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
.+..+-++.-..+.+.-+|..+|. .+|-|+.+.+...+........++.|.+.++|..|+..+-
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344555543222233346777665 6889998887766555455677889999999999988653
No 238
>smart00150 SPEC Spectrin repeats.
Probab=29.67 E-value=1.1e+02 Score=21.97 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
....+..|.+...+..+|...+..++.|..+-..
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 63 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQ 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5577888889999999999999998888776443
No 239
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=29.60 E-value=58 Score=27.06 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Q 021537 284 QRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
.-+-.|..||-.|+.+|+.|+.+
T Consensus 106 ~hr~~ID~eIe~Lq~Ki~~LKei 128 (145)
T PF12548_consen 106 DHRLHIDHEIETLQDKIKNLKEI 128 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677778888887777754
No 240
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=29.59 E-value=46 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhcC
Q 021537 288 ELKKEVCPLKFELKEMVHMLFTMS 311 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~ 311 (311)
-|..|+.+|-.-|.++++.|.+||
T Consensus 6 ~L~~qL~qL~aNL~~t~~~l~~~s 29 (45)
T PF08227_consen 6 HLASQLAQLQANLADTENLLEMTS 29 (45)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355666666666666666666653
No 241
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=29.15 E-value=1.3e+02 Score=31.70 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=17.8
Q ss_pred ceEEEEEeeChHHHHHHHHHcCCCccCCeE
Q 021537 80 KCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (311)
Q Consensus 80 kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (311)
.|+.||-|....++..|+. -|.+|++-.
T Consensus 509 lGVt~IP~~kLt~dl~~~~--egam~d~~t 536 (894)
T KOG0132|consen 509 LGVTYIPWEKLTDDLEAWC--EGAMLDGTT 536 (894)
T ss_pred cCeeEeehHhcCHHHHHhh--hhceecCcc
Confidence 4677777777777776665 345555443
No 242
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=28.94 E-value=1.3e+02 Score=22.65 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
....+|..+-.|..||..+|.+|.+|..-||+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888999999999999999877764
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.79 E-value=56 Score=30.30 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=24.2
Q ss_pred EEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 83 aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
|||+|.+..+|+.|++.+.... ...+.|..|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999999654333 34556666643
No 244
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=28.65 E-value=75 Score=23.43 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.|...| .+|+.|+.||+..+++|..++..|
T Consensus 14 ~Ls~vl---~~LqDE~~hm~~e~~~L~~~~~~~ 43 (79)
T PF06657_consen 14 ALSEVL---KALQDEFGHMKMEHQELQDEYKQM 43 (79)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444 466789999999999986666554
No 245
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.42 E-value=58 Score=29.42 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=25.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhh--cCCceEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFD--KYGSVVAVKI 71 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~--~~G~I~~v~i 71 (311)
...++|||||+.++..-|..++. .||.+.-+.|
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 56789999999999999988886 4665444433
No 246
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.40 E-value=1.2e+02 Score=23.45 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+-+..++++|..+|.+|+..+..|.+++..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (113)
T cd01109 81 LELLEEHREELEEQIAELQETLAYLDYKIDY 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444466677777777777777777776653
No 247
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.19 E-value=1.6e+02 Score=20.37 Aligned_cols=21 Identities=43% Similarity=0.537 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.+.+.|+.+|..|+..+..|+
T Consensus 40 ~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554
No 248
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.94 E-value=99 Score=20.41 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~ 305 (311)
++|++||.-|+.+|+-|..
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666554
No 249
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=27.89 E-value=65 Score=21.91 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHHhhh
Q 021537 292 EVCPLKFELKEMVHMLF 308 (311)
Q Consensus 292 ~~~~~~~~~~~~~~~~~ 308 (311)
+|..|+..|.+|+.|..
T Consensus 5 ~l~~l~~~i~~l~~~~~ 21 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQ 21 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 250
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.72 E-value=1e+02 Score=23.63 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.++.+..+|+.+|..++..++++..-|+
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655444
No 251
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.57 E-value=88 Score=28.60 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=24.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI 71 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i 71 (311)
.....|+|||++++..-|..++...-.+..+.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 356679999999999999988887655434333
No 252
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.45 E-value=1.4e+02 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+++++|..||..|+..++.|..+|..
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~~~l~~ 107 (108)
T cd01107 80 LREKLAELEAEIEELQRILRLLEDRLKQ 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466677777777777777777777754
No 253
>PF14282 FlxA: FlxA-like protein
Probab=27.37 E-value=71 Score=24.87 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 021537 274 DQVKELDRSI 283 (311)
Q Consensus 274 ~~~~~~~~~~ 283 (311)
.+.+.|++-|
T Consensus 19 ~~I~~L~~Qi 28 (106)
T PF14282_consen 19 SQIEQLQKQI 28 (106)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 254
>PRK13879 conjugal transfer protein TrbJ; Provisional
Probab=27.32 E-value=79 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.--.|+....+.++|.|++..|+.+++||+.
T Consensus 40 i~~a~~~v~q~~~Qi~Qlq~Qiqqy~nql~N 70 (253)
T PRK13879 40 IMTAIESVAQTLKQIEQYQTQLQQYENMLQN 70 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677777777777777776654
No 255
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.12 E-value=1.3e+02 Score=23.83 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Q 021537 282 SIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+.+..+.|+..+...++++|.|+
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 92 LQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554
No 256
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=26.97 E-value=2.9e+02 Score=28.08 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=29.9
Q ss_pred CceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCCC
Q 021537 79 GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120 (311)
Q Consensus 79 ~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~~ 120 (311)
..|-| +.|+++++|.+||. ++..-.|-.|.|.+.-|++.
T Consensus 382 ~~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPkGg 420 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPKGG 420 (535)
T ss_pred EEEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCC
Confidence 45656 45999999999997 56667788888888766643
No 257
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.92 E-value=1.2e+02 Score=26.07 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.+.+...+++++.+|.+|+++|++..
T Consensus 148 i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 148 IEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344556666666666666666543
No 258
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=26.79 E-value=1.3e+02 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
...--.++..+.+.++|.|+...|+.|.+||.++
T Consensus 36 q~i~~aa~~~~q~~~Qi~qlqnQiq~y~nql~n~ 69 (246)
T TIGR02780 36 QQILTAAESVEQLNNQIQQLQNQIQRYENQLKNT 69 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677777777778887888777777654
No 259
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.77 E-value=1.3e+02 Score=23.79 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..+-...++..|..++..|+..++.|..++.
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666665554
No 260
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=26.73 E-value=1.8e+02 Score=22.21 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 274 DQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
++....-+.|...+++..+|..+-++..|+..++..+
T Consensus 19 ~~ed~~v~~i~~~e~I~~~i~~li~~k~ei~~~I~~l 55 (100)
T PF07374_consen 19 KQEDKIVKIIDLKEEIEREIDELIKEKLEIRRAINKL 55 (100)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344556666667777777777777666666665543
No 261
>PRK14127 cell division protein GpsB; Provisional
Probab=26.64 E-value=2.5e+02 Score=22.13 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=36.8
Q ss_pred cccccCCCCCCCchhHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 260 QLREFSSNSSDDNSDQVK-ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 260 ~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..++|+..--|-..+.+. =|+..|+..+.|..|+..|++++..|..-|..
T Consensus 12 ~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 12 LEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred hhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444455555555 67888899999999999999999999876643
No 262
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=26.51 E-value=1.2e+02 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+.+++.+++..|++++.+|..-+..
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666554443
No 263
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.48 E-value=96 Score=26.03 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=7.5
Q ss_pred HHHHHHhhhhHHHHHHHH
Q 021537 286 REELKKEVCPLKFELKEM 303 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (311)
..+|+.||.+|+++|..|
T Consensus 118 i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 264
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.47 E-value=1.4e+02 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+.....+.++++.++..+++++++|...|..+
T Consensus 47 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 47 LLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666888888999999999988888877643
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=14 Score=36.05 Aligned_cols=76 Identities=11% Similarity=-0.064 Sum_probs=54.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...|+..||..+++.+|.-+|.-||-|..+.+.....+ -....+||+... .+|..+|+.+.-..+-|..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 34577788989999999999999999988876554333 455677777653 44566666555556677778777764
No 266
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.77 E-value=85 Score=24.80 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+.|..++.+|++++++|..++..
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~ 105 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAE 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777666654
No 267
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=25.40 E-value=1.4e+02 Score=26.11 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.|+.++++-+.|.++|.++.++|..|+
T Consensus 119 AL~eaL~ENe~Lh~~ie~~~eEi~~lk 145 (200)
T PF07412_consen 119 ALEEALEENEKLHKEIEQKDEEIAKLK 145 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666544444443
No 268
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=25.35 E-value=1.2e+02 Score=26.87 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Q 021537 284 QRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
..-.+|+.+|.+|+++|++....
T Consensus 44 ~e~~~l~~~i~~L~~~l~~~~~~ 66 (212)
T COG3599 44 DENEDLEDEIDELKEELKEAADA 66 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 55556666666666666666554
No 269
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.21 E-value=1.4e+02 Score=25.19 Aligned_cols=23 Identities=9% Similarity=0.427 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh
Q 021537 285 RREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+.+.|.+++..+++.-+.|...|
T Consensus 126 e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 126 ELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555444
No 270
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.18 E-value=2.1e+02 Score=23.60 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.6
Q ss_pred eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC
Q 021537 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (311)
Q Consensus 66 I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~ 103 (311)
|..|.++.. .+||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556666544 7899999999888899999877654
No 271
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.95 E-value=1.5e+02 Score=21.71 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.+|..-|.+.|.|..|+..|.+.+|++-
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVy 31 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVY 31 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998864
No 272
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.69 E-value=1.5e+02 Score=23.10 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+-...++++|..+|..|+..++.|..++..+
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444677778888888888888877776543
No 273
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=24.68 E-value=1.4e+02 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELK 301 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (311)
.++++++.+..+.|+.||.+||.-|.
T Consensus 118 ceELn~~M~~v~~La~qIK~Ik~~lD 143 (149)
T PF10157_consen 118 CEELNESMKPVYKLAQQIKDIKKLLD 143 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666655554443
No 274
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=24.34 E-value=1.2e+02 Score=23.40 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=29.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeCh
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP 90 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~ 90 (311)
..-||||+++..+-+.--..+-..++.-..+-+..+ ..-.||+|.++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCCCCcEEEecCCC
Confidence 457999999887776554444444543222222222 22448999887653
No 275
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=24.29 E-value=1.3e+02 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.....+++..+++++|.+|++.|.+++..+..+
T Consensus 35 ~i~q~~~q~~q~~~q~~ql~~Q~~q~k~~y~sl 67 (220)
T TIGR02791 35 ALAQAIEQMAALKTQYEQLSEQIEQYKQQYGSL 67 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888888888888776554
No 276
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.05 E-value=1.2e+02 Score=30.28 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=44.0
Q ss_pred EEEcCCCCCCcH---HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 42 VYVGGLPYSANE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 42 lfVgnLp~~~te---~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
=+||||+.-... ..|..+-.+||+|-.+++-. .-.|...+.+.|+.|+.. ++..+.+++.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 358888754332 44555556899999887743 246777889999999985 8889998875
No 277
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=23.81 E-value=96 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 021537 275 QVKELDRSIQRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
-.+..+++-..++.+..||..|++++.+|+.+
T Consensus 123 aL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 123 ALEENEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677788888888888765555443
No 278
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.70 E-value=1.1e+02 Score=21.60 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
++..+|+.+|.+++.+..+|..-+..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666554443
No 279
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.64 E-value=1.2e+02 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=11.9
Q ss_pred HHHHHhhhhHHHHHHHHHHhhh
Q 021537 287 EELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.-++.++.++++++.+|..+..
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~ 60 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRA 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 280
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=23.25 E-value=95 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+-|+|+.|+..+||+|..|...|-
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLa 68 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLA 68 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999998887763
No 281
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.24 E-value=1.5e+02 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+..+...++.++|..+|..|++.++++.
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666888999999999998888764
No 282
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.02 E-value=1.2e+02 Score=32.03 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.++|-.-.||+||+.+|||+..+|+.+
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667777788999999999999988764
No 283
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=22.95 E-value=98 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=14.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHh
Q 021537 286 REELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~ 306 (311)
+.+++.||..||+.|+||..-
T Consensus 62 mfAVREEVe~Lk~qI~eL~er 82 (123)
T KOG4797|consen 62 MFAVREEVEVLKEQIRELEER 82 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777653
No 284
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=22.89 E-value=2.1e+02 Score=20.71 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=8.0
Q ss_pred HHhhhhHHHHHHHHHHhh
Q 021537 290 KKEVCPLKFELKEMVHML 307 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~ 307 (311)
..+|..|+..+.+|...|
T Consensus 57 s~~I~~m~~~~~~l~~~l 74 (87)
T PF08700_consen 57 SDEISSMENDLSELRNLL 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 285
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.78 E-value=1.3e+02 Score=30.61 Aligned_cols=33 Identities=27% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+..++++.++|++|+.++++.++.|++-|+++
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~ 245 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666788888888888888888888777653
No 286
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=22.69 E-value=2.1e+02 Score=23.31 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (311)
++.|.|+.|++.|..++--+
T Consensus 88 qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444433
No 287
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.69 E-value=1.8e+02 Score=19.34 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
+..++|..+|.+|+.....|...+..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776666655543
No 288
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.65 E-value=1.8e+02 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=6.4
Q ss_pred HHHHHhhhhHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEM 303 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (311)
+.|..|+..+++++.+|
T Consensus 52 ~~L~~e~~~l~~E~e~L 68 (87)
T PF12709_consen 52 DELENENKALKRENEQL 68 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 289
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.56 E-value=1.5e+02 Score=22.95 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+.+.+.++.++|+.+...|+++++.|++
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444445566666666666666666643
No 290
>PF15463 ECM11: Extracellular mutant protein 11
Probab=22.50 E-value=1.9e+02 Score=23.50 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+-++|..+..+|.++|..|+..-..|
T Consensus 112 ~R~eav~~~~~~l~~kL~~mk~~G~ei 138 (139)
T PF15463_consen 112 RRAEAVRAQGEQLDRKLEKMKEGGKEI 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 445566777777777777777655443
No 291
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.44 E-value=1.1e+02 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 285 RREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..+-|..++.+|++++++|..++..|
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l 105 (113)
T cd01109 80 RLELLEEHREELEEQIAELQETLAYL 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777776543
No 292
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.43 E-value=1.6e+02 Score=27.23 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.++..+.+..++..++.++|++.+.|+.+|
T Consensus 77 ~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 77 ELKKELAELEQLLEEVESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666667777777777777777766
No 293
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.04 E-value=2.1e+02 Score=22.85 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=4.7
Q ss_pred HHhhhhHHHHHH
Q 021537 290 KKEVCPLKFELK 301 (311)
Q Consensus 290 ~~~~~~~~~~~~ 301 (311)
..||..+++.|.
T Consensus 29 E~E~~~l~~el~ 40 (120)
T PF12325_consen 29 EGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 294
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.00 E-value=1.7e+02 Score=21.59 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
..||..-|.+.|-|..|...|-+.+|+.-
T Consensus 13 ~~QLrafIerIERlEeEk~~i~~dikdvy 41 (85)
T COG3750 13 AGQLRAFIERIERLEEEKKTIADDIKDVY 41 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999998888888764
No 295
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=37 Score=32.81 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=45.7
Q ss_pred ceEEEcCCCCCCcH--------HHHHHHhhc--CCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHH
Q 021537 40 SSVYVGGLPYSANE--------DSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (311)
Q Consensus 40 ~~lfVgnLp~~~te--------~~L~~~F~~--~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~ 98 (311)
..+|+.+++.+.+. +++..+|.. .+.+..|.+-.+... ...|..|++|.....|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56677777665444 488999988 678888877776634 688899999999999999974
No 296
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=21.77 E-value=2.4e+02 Score=21.39 Aligned_cols=48 Identities=31% Similarity=0.446 Sum_probs=28.8
Q ss_pred eEEEcCCCCCCcHHHH---HHHhhcCCceEEEEE--ee-CCCCCCceEEEEEee
Q 021537 41 SVYVGGLPYSANEDSV---RKVFDKYGSVVAVKI--VN-DRSTRGKCYGFVTFG 88 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L---~~~F~~~G~I~~v~i--~~-~~~~~~kg~aFVeF~ 88 (311)
..|+.+||..+-+.++ +..|..++.-..|.+ .. ...+...|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4589999999887665 456666665455544 11 223367777766554
No 297
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.61 E-value=1.6e+02 Score=22.48 Aligned_cols=23 Identities=9% Similarity=0.162 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHh
Q 021537 284 QRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
+++++|..||..|+..+..|..|
T Consensus 78 ~~~~~l~~~i~~l~~~~~~l~~~ 100 (102)
T cd04789 78 ERLSSLAEQIARKQQARDLLAAL 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444
No 298
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.47 E-value=1.2e+02 Score=23.67 Aligned_cols=20 Identities=10% Similarity=0.321 Sum_probs=8.9
Q ss_pred HHHHhhhhHHHHHHHHHHhh
Q 021537 288 ELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~ 307 (311)
.|+.++..|++++++|..++
T Consensus 85 ~l~~~~~~l~~~i~~L~~~~ 104 (112)
T cd01282 85 VLRRELARIDRQIADLTRSR 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 299
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=21.42 E-value=90 Score=27.97 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=16.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 286 REELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.++|.+|..+||+++++|...+|.
T Consensus 203 ~~~L~e~Ae~ie~~~~el~e~~~~ 226 (238)
T TIGR00161 203 PEPLLKEAEAIESRLKKLAEQVQG 226 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777776654
No 300
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=21.31 E-value=53 Score=33.77 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=53.0
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
+||+.+--...+..-+..+|..++.+...+++..... -..+-+|++|..+..+..|.. |.+..+....+.+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 7888877777777788888999999888777654333 455589999999998877755 6667776666554
No 301
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.16 E-value=2.4e+02 Score=27.30 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCceEEEcC-CCCCCcHHHHHHHhhc----CCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 38 DESSVYVGG-LPYSANEDSVRKVFDK----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 38 ~~~~lfVgn-Lp~~~te~~L~~~F~~----~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
.+..+.++. .+.+...-+|..+|.. +|-|+.+.+...+......+.++.|.+.++|..|+..+.
T Consensus 130 ~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 130 DGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 344555442 2233333467777743 788998888776655556677889999999999986543
No 302
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.15 E-value=2.1e+02 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+-+..+.++|..||.+|...++.|.+++.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 82 ALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666667777777776666666654
No 303
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.13 E-value=2e+02 Score=20.61 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
++-.++....+|+.||..++.+|+++
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677777777777777776654
No 304
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=20.90 E-value=3e+02 Score=19.09 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
....|-+|-.|+..|+..=.+|..+|++.
T Consensus 31 vL~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 31 VLLDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33778888999999999999999999874
No 305
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.80 E-value=1.4e+02 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+.++|+.+|..|++-+|.|..+-
T Consensus 21 ~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666665543
No 306
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.51 E-value=2.3e+02 Score=24.31 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..+.+--+.+.|+.+|.+|+..+.+|-.||-
T Consensus 107 e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~ 137 (181)
T KOG3335|consen 107 EIMELRLKVEKLENAIAELTKFFSQLHSKLN 137 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556778888888888888888877663
No 307
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=20.23 E-value=1.4e+02 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+..|.+.+||.|+.-.|..|.+||+..
T Consensus 50 ~rsleqVnnQIqqlQnQaq~yqNmlqNt 77 (252)
T COG5314 50 VRSLEQVNNQIQQLQNQAQQYQNMLQNT 77 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3788899999999999999999999753
No 308
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.19 E-value=3e+02 Score=19.36 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
..|.+.+.++| +..+.|.-. ..-++.|+.|.+.+.++.+++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs---G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS---GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT---SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC---CCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778898 444445321 124578888888888888877653
Done!