Query 021537
Match_columns 311
No_of_seqs 357 out of 2416
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 8.9E-23 3E-27 197.5 20.1 84 37-120 100-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 6.6E-21 2.3E-25 147.5 11.0 81 37-117 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.5E-20 2.9E-24 152.2 12.6 88 33-120 33-121 (156)
4 2dnz_A Probable RNA-binding pr 99.8 3.2E-19 1.1E-23 136.1 12.4 85 37-121 3-88 (95)
5 3ex7_B RNA-binding protein 8A; 99.8 1.2E-19 4.1E-24 145.8 10.0 88 34-121 17-105 (126)
6 3s8s_A Histone-lysine N-methyl 99.8 2.3E-19 7.7E-24 141.6 11.2 81 37-117 4-85 (110)
7 2fy1_A RNA-binding motif prote 99.8 4.9E-19 1.7E-23 140.8 12.5 85 36-120 4-88 (116)
8 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.1E-19 1.1E-23 133.8 10.7 83 36-118 3-86 (87)
9 1whw_A Hypothetical protein ri 99.8 6.7E-19 2.3E-23 135.4 12.2 86 36-121 5-91 (99)
10 2dnm_A SRP46 splicing factor; 99.8 3.4E-19 1.2E-23 138.1 10.6 86 35-120 9-95 (103)
11 3md1_A Nuclear and cytoplasmic 99.8 5.4E-19 1.9E-23 131.3 11.2 81 39-119 1-82 (83)
12 2cq0_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 137.1 11.4 87 35-121 11-98 (103)
13 2dgs_A DAZ-associated protein 99.8 7.8E-19 2.7E-23 135.1 12.1 86 35-121 6-92 (99)
14 1x5u_A Splicing factor 3B subu 99.8 5.5E-19 1.9E-23 137.4 11.3 87 35-121 11-98 (105)
15 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-18 6.3E-23 136.6 14.3 87 35-121 11-98 (115)
16 2do4_A Squamous cell carcinoma 99.8 8.4E-19 2.9E-23 135.2 11.9 85 36-120 14-98 (100)
17 2d9p_A Polyadenylate-binding p 99.8 8.6E-19 3E-23 135.8 11.7 86 35-121 11-96 (103)
18 1x5s_A Cold-inducible RNA-bind 99.8 5.9E-19 2E-23 136.4 10.8 87 35-121 8-95 (102)
19 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-18 6.1E-23 141.3 14.1 87 35-121 38-125 (139)
20 1x5t_A Splicing factor 3B subu 99.8 5E-19 1.7E-23 135.2 10.1 84 37-120 3-88 (96)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.7E-19 1.9E-23 136.5 9.9 86 36-121 9-95 (102)
22 2lxi_A RNA-binding protein 10; 99.8 1.2E-19 3.9E-24 138.2 5.8 82 39-120 1-85 (91)
23 2cq3_A RNA-binding protein 9; 99.8 2.3E-18 7.9E-23 133.4 13.3 86 35-121 11-96 (103)
24 2dgx_A KIAA0430 protein; RRM d 99.8 7.8E-19 2.7E-23 134.7 10.5 85 34-120 4-92 (96)
25 2cpz_A CUG triplet repeat RNA- 99.8 9.2E-19 3.1E-23 138.5 11.2 87 35-121 21-108 (115)
26 4f25_A Polyadenylate-binding p 99.8 6.6E-19 2.3E-23 139.7 10.3 81 39-120 5-85 (115)
27 2cpf_A RNA binding motif prote 99.8 1E-18 3.5E-23 134.1 10.9 85 37-121 3-91 (98)
28 1p27_B RNA-binding protein 8A; 99.8 9.9E-19 3.4E-23 136.1 10.9 84 36-119 20-104 (106)
29 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-18 3.5E-23 135.7 10.9 85 35-121 11-97 (104)
30 2dnh_A Bruno-like 5, RNA bindi 99.8 1.8E-18 6.1E-23 134.4 12.2 85 37-121 13-100 (105)
31 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-18 7.1E-23 133.7 12.5 85 35-120 11-95 (103)
32 1x4h_A RNA-binding protein 28; 99.8 1.4E-18 4.7E-23 136.3 11.6 87 35-121 11-104 (111)
33 2dng_A Eukaryotic translation 99.8 1.9E-18 6.5E-23 134.0 12.1 84 35-120 11-95 (103)
34 2dhg_A TRNA selenocysteine ass 99.8 1.3E-18 4.3E-23 135.0 10.8 85 36-120 6-92 (104)
35 2cph_A RNA binding motif prote 99.8 1.7E-18 5.7E-23 135.0 11.4 86 35-120 11-99 (107)
36 2x1f_A MRNA 3'-END-processing 99.8 1.2E-18 4.2E-23 133.3 10.4 82 38-119 1-83 (96)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.5E-19 3.3E-23 130.5 9.5 80 37-116 5-85 (85)
38 1x4c_A Splicing factor, argini 99.8 2.6E-18 8.8E-23 134.6 12.3 77 37-119 13-94 (108)
39 3ulh_A THO complex subunit 4; 99.8 1.9E-18 6.7E-23 134.7 11.4 83 34-116 24-106 (107)
40 2lkz_A RNA-binding protein 5; 99.8 3.9E-19 1.3E-23 136.6 7.0 80 38-117 8-94 (95)
41 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.9E-23 132.4 10.2 82 36-117 13-94 (95)
42 2cqc_A Arginine/serine-rich sp 99.8 1.4E-18 4.9E-23 132.3 10.1 83 35-117 11-94 (95)
43 2div_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 133.9 9.8 87 34-120 4-96 (99)
44 2khc_A Testis-specific RNP-typ 99.8 2.7E-18 9.1E-23 136.3 11.9 83 34-116 35-118 (118)
45 2la6_A RNA-binding protein FUS 99.8 1.5E-18 5.1E-23 133.6 10.1 83 34-116 8-99 (99)
46 2cqd_A RNA-binding region cont 99.8 4.6E-18 1.6E-22 134.6 13.0 84 36-120 14-98 (116)
47 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-18 6.2E-23 131.6 10.3 81 36-116 13-94 (94)
48 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-18 5.7E-23 135.8 10.3 85 36-120 23-108 (110)
49 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-18 5.4E-23 135.0 10.0 86 35-120 9-98 (106)
50 2do0_A HnRNP M, heterogeneous 99.8 8E-18 2.7E-22 132.7 14.1 84 36-119 12-95 (114)
51 4a8x_A RNA-binding protein wit 99.8 1.6E-18 5.5E-23 130.0 9.6 82 38-119 3-86 (88)
52 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-18 8.9E-23 130.2 10.8 84 36-120 5-88 (92)
53 1x4a_A Splicing factor, argini 99.8 3.3E-18 1.1E-22 134.0 11.7 85 35-121 18-102 (109)
54 2jrs_A RNA-binding protein 39; 99.8 1.4E-18 4.9E-23 136.3 9.4 86 34-119 21-107 (108)
55 3p5t_L Cleavage and polyadenyl 99.8 3.9E-19 1.4E-23 134.7 6.0 81 40-120 2-85 (90)
56 2cpe_A RNA-binding protein EWS 99.8 2.2E-18 7.4E-23 135.8 10.3 87 35-121 11-106 (113)
57 2kt5_A RNA and export factor-b 99.8 1E-17 3.6E-22 134.2 13.7 86 35-120 31-116 (124)
58 3ns6_A Eukaryotic translation 99.8 6.3E-19 2.2E-23 136.3 6.3 81 38-118 5-93 (100)
59 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.5E-18 1.2E-22 144.0 11.4 86 35-120 68-154 (165)
60 1s79_A Lupus LA protein; RRM, 99.8 1.8E-18 6E-23 134.8 8.6 80 37-117 9-88 (103)
61 3ucg_A Polyadenylate-binding p 99.8 5.2E-18 1.8E-22 127.6 10.9 79 39-118 6-85 (89)
62 2cpi_A CCR4-NOT transcription 99.8 2.6E-18 8.9E-23 135.3 9.6 86 35-120 11-103 (111)
63 2dgu_A Heterogeneous nuclear r 99.8 8.1E-18 2.8E-22 130.5 12.3 79 36-121 8-86 (103)
64 2dh8_A DAZ-associated protein 99.8 2.8E-18 9.6E-23 133.4 9.6 85 36-121 13-98 (105)
65 2err_A Ataxin-2-binding protei 99.8 2.9E-18 9.9E-23 134.7 9.5 85 33-118 23-107 (109)
66 3s7r_A Heterogeneous nuclear r 99.8 7.6E-18 2.6E-22 126.3 11.3 80 35-115 7-87 (87)
67 2dgw_A Probable RNA-binding pr 99.7 8.5E-18 2.9E-22 127.3 11.2 83 36-120 7-89 (91)
68 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-17 4.1E-22 129.3 12.3 86 34-121 10-96 (103)
69 3n9u_C Cleavage and polyadenyl 99.7 4.6E-18 1.6E-22 142.3 10.6 80 38-117 54-136 (156)
70 2kxn_B Transformer-2 protein h 99.7 2.9E-18 1E-22 138.9 9.1 86 34-119 41-127 (129)
71 2dnq_A RNA-binding protein 4B; 99.7 8.9E-18 3E-22 127.0 11.1 79 36-121 5-83 (90)
72 3beg_B Splicing factor, argini 99.7 2.5E-18 8.6E-23 136.4 8.2 75 37-117 14-93 (115)
73 2nlw_A Eukaryotic translation 99.7 3.9E-18 1.3E-22 133.0 9.0 85 33-118 9-100 (105)
74 2cqp_A RNA-binding protein 12; 99.7 3E-18 1E-22 131.5 8.1 84 36-119 12-96 (98)
75 2wbr_A GW182, gawky, LD47780P; 99.7 4.2E-18 1.4E-22 128.0 8.6 75 37-116 5-79 (89)
76 1sjq_A Polypyrimidine tract-bi 99.7 3.7E-18 1.3E-22 133.3 8.7 81 36-121 13-95 (105)
77 1x4b_A Heterogeneous nuclear r 99.7 5.8E-18 2E-22 134.0 10.0 82 39-121 27-109 (116)
78 2la4_A Nuclear and cytoplasmic 99.7 3.7E-18 1.3E-22 131.7 8.6 80 33-117 21-100 (101)
79 1wez_A HnRNP H', FTP-3, hetero 99.7 7.2E-18 2.5E-22 131.0 10.1 82 37-120 13-94 (102)
80 3r27_A HnRNP L, heterogeneous 99.7 7.4E-18 2.5E-22 130.4 10.1 79 35-118 17-97 (100)
81 2fc9_A NCL protein; structure 99.7 9.7E-18 3.3E-22 129.4 10.8 82 36-120 12-93 (101)
82 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.1E-18 7.2E-23 133.3 6.6 83 35-119 15-99 (100)
83 1x4d_A Matrin 3; structural ge 99.7 5.7E-18 1.9E-22 131.7 8.9 80 35-119 11-93 (102)
84 3q2s_C Cleavage and polyadenyl 99.7 1E-18 3.5E-23 155.1 4.8 80 38-117 67-149 (229)
85 2cq4_A RNA binding motif prote 99.7 7.3E-18 2.5E-22 133.1 9.2 80 39-119 25-105 (114)
86 2ek1_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 130.4 6.8 80 38-117 14-94 (95)
87 2cq1_A PTB-like protein L; RRM 99.7 2.2E-17 7.5E-22 128.2 11.6 82 35-121 11-94 (101)
88 2dgt_A RNA-binding protein 30; 99.7 2.1E-17 7.2E-22 125.4 11.3 80 35-121 6-85 (92)
89 1why_A Hypothetical protein ri 99.7 1.3E-17 4.5E-22 127.8 10.2 80 36-120 14-95 (97)
90 1p1t_A Cleavage stimulation fa 99.7 5.9E-18 2E-22 131.1 8.2 81 39-119 8-89 (104)
91 2cpd_A Apobec-1 stimulating pr 99.7 2.7E-17 9.4E-22 126.5 11.7 79 35-120 11-91 (99)
92 2dis_A Unnamed protein product 99.7 1.9E-17 6.6E-22 129.4 10.9 85 37-121 6-95 (109)
93 1x4e_A RNA binding motif, sing 99.7 1.9E-18 6.6E-23 129.1 4.7 79 37-115 3-82 (85)
94 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-17 4.9E-22 130.8 9.9 84 36-120 22-106 (109)
95 1x5o_A RNA binding motif, sing 99.7 2.1E-17 7.3E-22 130.3 11.0 83 36-118 22-112 (114)
96 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.8E-22 138.2 11.0 85 36-120 67-152 (158)
97 2ad9_A Polypyrimidine tract-bi 99.7 1.8E-17 6.1E-22 132.3 10.6 83 34-121 26-110 (119)
98 2hvz_A Splicing factor, argini 99.7 1.1E-17 3.8E-22 129.1 9.1 77 40-120 1-77 (101)
99 2jwn_A Embryonic polyadenylate 99.7 2E-17 6.7E-22 132.4 10.8 81 39-120 36-117 (124)
100 2fc8_A NCL protein; structure 99.7 2.2E-17 7.6E-22 127.5 10.6 84 35-121 11-95 (102)
101 1wg5_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 128.3 10.7 83 36-119 12-95 (104)
102 2mss_A Protein (musashi1); RNA 99.7 4.7E-18 1.6E-22 123.9 6.3 74 41-115 1-75 (75)
103 2xnq_A Nuclear polyadenylated 99.7 2.6E-17 8.8E-22 126.6 10.7 79 34-119 17-96 (97)
104 2dnp_A RNA-binding protein 14; 99.7 2.4E-17 8.2E-22 124.6 10.4 78 36-120 6-83 (90)
105 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 8.8E-22 128.9 10.7 81 36-121 22-102 (109)
106 2db1_A Heterogeneous nuclear r 99.7 9.5E-18 3.3E-22 133.7 8.3 81 37-118 15-98 (118)
107 2a3j_A U1 small nuclear ribonu 99.7 1.6E-17 5.6E-22 134.2 9.7 83 35-119 25-111 (127)
108 2cpj_A Non-POU domain-containi 99.7 3E-17 1E-21 126.3 10.4 81 35-120 11-91 (99)
109 2cpy_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 132.5 7.9 82 37-119 13-95 (114)
110 2jvo_A Nucleolar protein 3; nu 99.7 1.8E-17 6.1E-22 130.1 9.1 79 35-120 27-105 (108)
111 2jvr_A Nucleolar protein 3; RN 99.7 1E-17 3.5E-22 132.3 7.7 80 36-118 25-105 (111)
112 2m2b_A RNA-binding protein 10; 99.7 5.6E-18 1.9E-22 137.3 6.3 84 36-120 20-110 (131)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.9E-18 2.7E-22 123.1 6.5 75 40-115 1-76 (77)
114 2kvi_A Nuclear polyadenylated 99.7 1.2E-17 4.3E-22 127.8 7.9 79 36-121 7-86 (96)
115 1wex_A Hypothetical protein (r 99.7 3.8E-17 1.3E-21 127.5 10.7 80 36-120 12-93 (104)
116 2lea_A Serine/arginine-rich sp 99.7 7.3E-18 2.5E-22 137.6 6.9 86 35-120 43-129 (135)
117 2cpx_A Hypothetical protein FL 99.7 2.5E-17 8.6E-22 130.0 9.8 83 36-121 22-108 (115)
118 3lqv_A PRE-mRNA branch site pr 99.7 3.3E-17 1.1E-21 129.4 10.1 83 35-119 4-86 (115)
119 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-17 7.5E-22 125.5 8.7 79 36-120 5-85 (93)
120 2e5j_A Methenyltetrahydrofolat 99.7 2.5E-17 8.4E-22 126.3 8.7 79 37-119 17-95 (97)
121 2ytc_A PRE-mRNA-splicing facto 99.7 3.9E-17 1.3E-21 121.8 9.5 76 36-116 9-85 (85)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.3E-17 1.1E-21 133.4 9.9 81 35-115 59-140 (140)
123 2hgl_A HNRPF protein, heteroge 99.7 1.5E-17 5E-22 136.1 7.7 81 36-117 41-124 (136)
124 2krb_A Eukaryotic translation 99.7 1.2E-17 4.1E-22 123.9 6.5 73 39-112 1-80 (81)
125 2ki2_A SS-DNA binding protein 99.7 5.1E-18 1.7E-22 128.1 4.4 80 40-120 2-82 (90)
126 1wel_A RNA-binding protein 12; 99.7 1.5E-17 5.1E-22 133.4 7.3 83 35-118 21-104 (124)
127 1wf1_A RNA-binding protein RAL 99.7 5.1E-17 1.7E-21 127.5 9.8 77 36-119 24-101 (110)
128 2lmi_A GRSF-1, G-rich sequence 99.7 8.4E-18 2.9E-22 131.5 5.1 83 35-118 7-92 (107)
129 2lcw_A RNA-binding protein FUS 99.5 1.1E-18 3.8E-23 138.3 0.0 85 37-121 5-98 (116)
130 2dnn_A RNA-binding protein 12; 99.7 4E-17 1.4E-21 128.5 8.8 78 39-118 16-93 (109)
131 1nu4_A U1A RNA binding domain; 99.7 1.7E-17 5.7E-22 126.9 6.4 82 36-119 5-90 (97)
132 2hgn_A Heterogeneous nuclear r 99.7 8.7E-18 3E-22 137.9 4.4 84 35-120 42-125 (139)
133 1x4f_A Matrin 3; structural ge 99.7 2.2E-17 7.6E-22 130.4 6.4 81 35-120 21-104 (112)
134 2f3j_A RNA and export factor b 99.7 5.7E-17 1.9E-21 138.4 9.2 84 35-118 84-167 (177)
135 1fjc_A Nucleolin RBD2, protein 99.7 3.5E-17 1.2E-21 125.0 7.0 81 36-120 13-93 (96)
136 1whx_A Hypothetical protein ri 99.7 5.4E-17 1.9E-21 127.9 8.2 75 39-118 10-84 (111)
137 1fj7_A Nucleolin RBD1, protein 99.7 7.5E-18 2.6E-22 130.0 3.2 82 37-120 15-97 (101)
138 2i2y_A Fusion protein consists 99.7 7.3E-17 2.5E-21 133.5 9.1 82 34-119 68-149 (150)
139 1x5p_A Negative elongation fac 99.7 3.2E-16 1.1E-20 120.1 11.5 78 36-120 12-89 (97)
140 2xs2_A Deleted in azoospermia- 99.7 6.2E-17 2.1E-21 125.1 7.6 81 38-120 8-88 (102)
141 1iqt_A AUF1, heterogeneous nuc 99.7 2.4E-17 8.3E-22 120.0 4.8 74 41-115 1-75 (75)
142 4f02_A Polyadenylate-binding p 99.7 2.2E-16 7.5E-21 138.0 11.1 83 36-118 12-95 (213)
143 2dha_A FLJ20171 protein; RRM d 99.7 5.4E-17 1.8E-21 130.4 6.4 80 37-117 21-104 (123)
144 2e5g_A U6 snRNA-specific termi 99.7 4.1E-16 1.4E-20 118.8 10.7 79 37-120 6-84 (94)
145 2hgm_A HNRPF protein, heteroge 99.7 1.2E-16 4.2E-21 128.8 8.0 81 35-117 38-120 (126)
146 3egn_A RNA-binding protein 40; 99.7 8.8E-17 3E-21 132.0 7.0 86 35-120 41-132 (143)
147 2cq2_A Hypothetical protein LO 99.7 2.5E-16 8.5E-21 124.6 8.8 83 33-120 19-108 (114)
148 3zzy_A Polypyrimidine tract-bi 99.7 4.4E-16 1.5E-20 126.0 10.5 79 37-119 26-107 (130)
149 1sjr_A Polypyrimidine tract-bi 99.6 5.3E-16 1.8E-20 130.1 10.4 80 37-119 44-125 (164)
150 1wg1_A KIAA1579 protein, homol 99.6 2.7E-16 9.2E-21 118.4 7.8 75 38-118 4-78 (88)
151 2e44_A Insulin-like growth fac 99.6 2.8E-16 9.5E-21 119.9 7.8 79 37-118 13-92 (96)
152 3md3_A Nuclear and cytoplasmic 99.6 8.7E-16 3E-20 127.3 11.4 82 35-116 83-165 (166)
153 3d2w_A TAR DNA-binding protein 99.6 4.9E-16 1.7E-20 117.6 8.8 78 35-120 7-86 (89)
154 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.6E-20 126.9 11.3 81 39-119 2-83 (167)
155 1b7f_A Protein (SXL-lethal pro 99.6 6.4E-16 2.2E-20 128.7 9.4 82 38-119 2-84 (168)
156 2e5i_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 122.4 10.7 76 39-119 25-103 (124)
157 2qfj_A FBP-interacting repress 99.6 1.7E-15 5.7E-20 131.4 11.8 84 37-120 123-207 (216)
158 3md3_A Nuclear and cytoplasmic 99.6 1.3E-15 4.6E-20 126.2 10.6 80 40-119 1-80 (166)
159 1wf0_A TDP-43, TAR DNA-binding 99.6 3.2E-16 1.1E-20 117.8 6.2 79 37-121 3-81 (88)
160 4f02_A Polyadenylate-binding p 99.6 8.2E-16 2.8E-20 134.3 9.6 79 39-118 103-181 (213)
161 2yh0_A Splicing factor U2AF 65 99.6 2E-15 6.9E-20 129.1 11.6 84 37-120 112-196 (198)
162 2j8a_A Histone-lysine N-methyl 99.6 8.6E-16 3E-20 123.1 8.2 77 40-116 3-94 (136)
163 2diu_A KIAA0430 protein; struc 99.6 1.2E-15 4E-20 115.8 8.5 75 37-120 6-86 (96)
164 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.5E-20 129.6 10.4 84 37-121 102-186 (196)
165 2g4b_A Splicing factor U2AF 65 99.6 2.3E-15 8E-20 125.9 11.0 80 37-116 92-172 (172)
166 3tyt_A Heterogeneous nuclear r 99.6 1.4E-15 4.7E-20 132.7 9.8 78 37-118 2-80 (205)
167 1l3k_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 128.7 10.3 83 36-119 10-93 (196)
168 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.6E-20 113.8 7.9 72 37-114 4-86 (87)
169 2bz2_A Negative elongation fac 99.6 2E-15 6.8E-20 120.8 8.9 78 36-120 36-113 (121)
170 2cjk_A Nuclear polyadenylated 99.6 1.1E-15 3.6E-20 127.4 7.4 79 39-118 87-166 (167)
171 3nmr_A Cugbp ELAV-like family 99.6 3.9E-15 1.3E-19 124.6 10.4 79 37-115 93-174 (175)
172 3u1l_A PRE-mRNA-splicing facto 99.6 2E-15 7E-20 134.3 8.4 80 36-120 131-231 (240)
173 2pe8_A Splicing factor 45; RRM 99.6 1E-14 3.5E-19 113.9 10.8 81 37-117 6-93 (105)
174 1b7f_A Protein (SXL-lethal pro 99.6 8.7E-15 3E-19 121.8 11.0 80 36-115 86-168 (168)
175 2voo_A Lupus LA protein; RNA-b 99.6 6.2E-15 2.1E-19 127.4 10.4 78 39-117 109-186 (193)
176 2dnl_A Cytoplasmic polyadenyla 99.6 3.6E-15 1.2E-19 117.8 8.0 76 37-115 6-85 (114)
177 2qfj_A FBP-interacting repress 99.6 5.7E-15 2E-19 128.0 9.5 80 39-118 28-108 (216)
178 3nmr_A Cugbp ELAV-like family 99.6 1.1E-14 3.7E-19 121.8 10.0 83 38-120 2-90 (175)
179 1fxl_A Paraneoplastic encephal 99.6 1.4E-14 4.9E-19 120.0 10.3 78 38-115 87-167 (167)
180 1fje_B Nucleolin RBD12, protei 99.6 7.6E-15 2.6E-19 123.3 8.5 78 37-118 97-174 (175)
181 3pgw_A U1-A; protein-RNA compl 99.6 2.5E-14 8.7E-19 129.5 12.6 77 36-116 204-281 (282)
182 3pgw_A U1-A; protein-RNA compl 99.5 2.3E-14 7.8E-19 129.8 11.3 83 35-119 5-91 (282)
183 2ghp_A U4/U6 snRNA-associated 99.5 1.7E-14 5.6E-19 131.4 9.3 83 35-118 206-291 (292)
184 2adc_A Polypyrimidine tract-bi 99.5 1.5E-14 5.1E-19 127.7 8.6 80 36-119 31-111 (229)
185 2cjk_A Nuclear polyadenylated 99.5 1.4E-14 4.9E-19 120.4 7.8 78 38-117 2-80 (167)
186 3smz_A Protein raver-1, ribonu 99.5 3.8E-14 1.3E-18 128.5 11.0 85 36-120 181-266 (284)
187 2dit_A HIV TAT specific factor 99.5 1.6E-13 5.4E-18 107.9 11.8 81 37-120 13-104 (112)
188 1qm9_A Polypyrimidine tract-bi 99.5 4.1E-14 1.4E-18 121.4 7.7 78 37-118 118-197 (198)
189 2adc_A Polypyrimidine tract-bi 99.5 7.9E-14 2.7E-18 123.0 9.6 79 36-118 148-228 (229)
190 1jmt_A Splicing factor U2AF 35 99.5 1.5E-14 5.1E-19 112.7 4.3 72 44-115 20-103 (104)
191 1qm9_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 122.2 6.7 77 39-119 3-80 (198)
192 3smz_A Protein raver-1, ribonu 99.5 1.6E-13 5.3E-18 124.4 11.3 83 37-119 93-176 (284)
193 3sde_A Paraspeckle component 1 99.5 5.8E-14 2E-18 126.4 8.3 78 35-117 18-95 (261)
194 3tyt_A Heterogeneous nuclear r 99.5 5.9E-14 2E-18 122.3 7.5 78 37-115 121-204 (205)
195 3v4m_A Splicing factor U2AF 65 99.5 1.1E-13 3.8E-18 107.9 7.9 80 38-117 4-96 (105)
196 1fje_B Nucleolin RBD12, protei 99.5 1.4E-14 4.9E-19 121.6 2.8 84 35-119 9-92 (175)
197 2ghp_A U4/U6 snRNA-associated 99.4 1.2E-13 4.2E-18 125.6 8.5 84 37-120 115-199 (292)
198 3sde_A Paraspeckle component 1 99.4 2.8E-13 9.6E-18 121.9 9.9 82 37-118 94-179 (261)
199 2g4b_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 112.6 8.8 75 38-118 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.4 4.3E-13 1.5E-17 106.8 8.7 80 38-117 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.4 4.1E-13 1.4E-17 114.7 8.3 75 38-118 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.6E-12 5.4E-17 100.5 9.1 66 49-120 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.7E-17 122.6 8.8 80 32-116 11-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 1.1E-11 3.7E-16 98.0 9.1 77 38-117 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 7.5E-11 2.6E-15 93.8 9.3 78 33-115 12-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 4.4E-11 1.5E-15 89.8 7.0 74 37-118 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1.3E-09 4.4E-14 82.2 6.6 74 35-116 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 4E-09 1.4E-13 92.2 10.3 82 36-117 121-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 2.7E-06 9.3E-11 65.5 8.3 74 36-114 18-96 (117)
210 1wey_A Calcipressin 1; structu 97.8 4.3E-05 1.5E-09 58.5 6.8 76 38-118 4-84 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.6 0.00014 4.8E-09 57.1 7.5 84 25-115 10-94 (119)
212 2dhx_A Poly (ADP-ribose) polym 97.4 0.0011 3.8E-08 50.4 9.3 72 38-117 7-83 (104)
213 1whv_A Poly(A)-specific ribonu 97.3 0.00078 2.7E-08 50.7 6.9 54 39-100 16-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.2 0.00048 1.6E-08 52.1 5.7 55 39-101 6-60 (101)
215 1uw4_A UPF3X; nonsense mediate 96.9 0.0043 1.5E-07 46.3 8.4 67 40-106 2-71 (91)
216 3p3d_A Nucleoporin 53; structu 96.5 0.0032 1.1E-07 50.0 5.1 76 39-116 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.1 0.0033 1.1E-07 60.6 3.6 56 39-99 53-108 (464)
218 3pgw_S U1-70K; protein-RNA com 95.8 0.048 1.6E-06 52.2 10.6 24 86-111 147-170 (437)
219 2kn4_A Immunoglobulin G-bindin 95.3 0.014 4.7E-07 47.3 4.0 36 68-104 2-37 (158)
220 2l08_A Regulator of nonsense t 94.5 0.031 1.1E-06 42.0 3.7 77 39-115 9-93 (97)
221 2i2y_A Fusion protein consists 94.4 0.012 4E-07 47.4 1.4 39 78-117 11-50 (150)
222 3d45_A Poly(A)-specific ribonu 87.5 1.2 4E-05 43.3 7.4 56 38-101 439-494 (507)
223 2pnv_A Small conductance calci 85.9 1.8 6.1E-05 27.3 5.0 35 276-310 8-42 (43)
224 2l5g_A GPS2 protein, G protein 85.0 1 3.5E-05 27.2 3.3 22 284-305 8-29 (38)
225 2g0c_A ATP-dependent RNA helic 83.9 2.6 8.8E-05 29.4 5.9 68 41-116 2-75 (76)
226 1ci6_A Transcription factor AT 82.0 2.6 8.9E-05 28.7 5.0 32 278-309 31-62 (63)
227 2ovc_A Potassium voltage-gated 81.6 1.2 4.3E-05 26.3 2.8 24 284-307 10-33 (33)
228 3bj4_A Potassium voltage-gated 80.1 1.8 6.2E-05 28.0 3.4 27 284-310 17-43 (49)
229 1hjb_A Ccaat/enhancer binding 79.8 2.9 9.9E-05 30.5 4.9 31 280-310 46-76 (87)
230 1uii_A Geminin; human, DNA rep 78.2 3.3 0.00011 29.8 4.6 32 278-309 40-71 (83)
231 1gu4_A CAAT/enhancer binding p 75.6 3.7 0.00013 29.3 4.3 30 281-310 47-76 (78)
232 3he4_B Synzip5; heterodimeric 74.7 6.1 0.00021 24.0 4.4 30 276-305 5-34 (46)
233 1txp_A HnRNP C, heterogeneous 74.0 3.5 0.00012 23.1 3.0 23 288-310 3-25 (28)
234 4dzn_A Coiled-coil peptide CC- 73.5 7.9 0.00027 21.8 4.4 25 281-305 6-30 (33)
235 1gmj_A ATPase inhibitor; coile 72.2 6 0.0002 28.6 4.7 27 279-305 53-79 (84)
236 2yy0_A C-MYC-binding protein; 70.9 7.2 0.00024 25.6 4.5 31 278-308 20-50 (53)
237 2wt7_A Proto-oncogene protein 70.2 8.2 0.00028 26.1 4.9 30 279-308 32-61 (63)
238 1t2k_D Cyclic-AMP-dependent tr 67.5 10 0.00034 25.4 4.9 28 281-308 33-60 (61)
239 3v86_A De novo design helix; c 65.6 3.5 0.00012 22.3 1.7 18 287-304 10-27 (27)
240 1uii_A Geminin; human, DNA rep 64.7 13 0.00043 26.8 5.1 34 275-308 44-77 (83)
241 1kd8_B GABH BLL, GCN4 acid bas 63.5 19 0.00066 21.4 4.8 26 278-303 9-34 (36)
242 2w6b_A RHO guanine nucleotide 62.8 6.6 0.00023 25.8 3.0 25 284-308 10-34 (56)
243 3c3g_A Alpha/beta peptide with 62.6 11 0.00036 22.1 3.5 24 278-301 8-31 (33)
244 3c3f_A Alpha/beta peptide with 60.6 12 0.00041 22.0 3.5 23 278-300 9-31 (34)
245 4e8u_A Putative uncharacterize 59.9 17 0.00057 29.9 5.7 58 39-98 12-81 (172)
246 1g6u_A Domain swapped dimer; d 59.5 10 0.00034 23.2 3.2 27 284-310 20-46 (48)
247 2l5g_B Putative uncharacterize 58.6 11 0.00039 23.3 3.4 27 281-307 6-32 (42)
248 2oxj_A Hybrid alpha/beta pepti 58.5 10 0.00035 22.3 3.0 23 278-300 9-31 (34)
249 1wlq_A Geminin; coiled-coil; 2 58.5 21 0.00072 25.6 5.3 31 278-308 32-62 (83)
250 2vz4_A Tipal, HTH-type transcr 58.0 9.6 0.00033 28.4 3.8 31 281-311 78-108 (108)
251 2ic6_A Nucleocapsid protein; h 57.6 18 0.00062 25.6 4.8 19 290-308 51-69 (78)
252 1zme_C Proline utilization tra 55.7 9.5 0.00033 25.8 3.2 24 286-309 46-69 (70)
253 1jnm_A Proto-oncogene C-JUN; B 54.8 8.7 0.0003 25.8 2.7 26 283-308 35-60 (62)
254 2k48_A Nucleoprotein; viral pr 52.5 20 0.0007 26.8 4.5 19 290-308 81-99 (107)
255 3kin_B Kinesin heavy chain; mo 52.3 13 0.00044 28.5 3.7 29 276-304 88-116 (117)
256 3l4f_A RHO guanine nucleotide 52.2 12 0.00042 25.2 3.0 25 285-309 8-32 (61)
257 2zxx_A Geminin; coiled-coil, c 52.0 19 0.00065 25.6 4.2 16 284-299 41-56 (79)
258 2wvr_A Geminin; DNA replicatio 51.7 22 0.00077 29.8 5.2 29 278-306 109-137 (209)
259 1am9_A Srebp-1A, protein (ster 51.2 21 0.00072 25.4 4.4 37 273-309 39-75 (82)
260 1use_A VAsp, vasodilator-stimu 50.6 26 0.00091 22.0 4.2 25 276-302 9-33 (45)
261 2wvr_A Geminin; DNA replicatio 50.3 19 0.00066 30.2 4.6 34 275-308 113-146 (209)
262 1m1j_C Fibrinogen gamma chain; 49.8 19 0.00064 33.8 5.1 38 273-310 30-67 (409)
263 2r2v_A GCN4 leucine zipper; co 49.2 33 0.0011 20.2 4.1 22 278-299 9-30 (34)
264 2wuj_A Septum site-determining 48.6 14 0.00048 24.5 2.9 32 274-305 23-55 (57)
265 1deb_A APC protein, adenomatou 48.4 27 0.00093 22.5 4.0 19 285-303 32-50 (54)
266 2er8_A Regulatory protein Leu3 47.5 13 0.00044 25.3 2.8 19 292-310 50-68 (72)
267 1kd8_A GABH AIV, GCN4 acid bas 47.4 43 0.0015 19.9 4.5 25 278-302 9-33 (36)
268 2yy0_A C-MYC-binding protein; 46.2 16 0.00055 23.9 2.9 22 285-306 20-41 (53)
269 1hwt_C Protein (heme activator 46.1 9.4 0.00032 26.6 1.9 21 290-310 57-77 (81)
270 2bni_A General control protein 45.8 26 0.0009 20.6 3.3 23 278-300 9-31 (34)
271 1wlq_A Geminin; coiled-coil; 2 45.5 35 0.0012 24.4 4.7 32 276-307 37-68 (83)
272 1uo4_A General control protein 45.3 19 0.00064 21.2 2.7 21 278-298 9-29 (34)
273 1ci6_A Transcription factor AT 44.9 43 0.0015 22.5 5.0 31 278-308 24-54 (63)
274 3b5n_C Protein transport prote 44.5 45 0.0015 23.0 5.1 34 273-306 36-69 (70)
275 3a1g_B Polymerase basic protei 43.9 11 0.00037 22.9 1.5 12 298-309 5-16 (40)
276 2wq1_A General control protein 42.4 49 0.0017 19.2 4.1 20 278-297 8-27 (33)
277 3ra3_A P1C; coiled coil domain 42.0 25 0.00086 19.1 2.7 18 287-304 10-27 (28)
278 2hy6_A General control protein 41.0 42 0.0014 19.7 3.7 23 278-300 9-31 (34)
279 1a93_B MAX protein, coiled coi 40.6 36 0.0012 20.1 3.4 25 279-303 9-33 (34)
280 1lwu_B Fibrinogen beta chain; 39.9 25 0.00087 31.8 4.2 32 278-309 29-60 (323)
281 2ic9_A Nucleocapsid protein; h 38.5 30 0.001 25.5 3.5 19 290-308 51-69 (96)
282 1deb_A APC protein, adenomatou 38.3 74 0.0025 20.4 4.9 24 284-307 24-47 (54)
283 3a2a_A Voltage-gated hydrogen 37.2 78 0.0027 20.7 4.9 29 281-309 22-50 (58)
284 3iv1_A Tumor susceptibility ge 37.1 37 0.0013 24.1 3.7 25 284-308 53-77 (78)
285 3r4h_A Coiled coil helix CC-TE 36.8 58 0.002 18.4 4.2 22 283-304 8-29 (34)
286 3m48_A General control protein 36.7 26 0.00087 20.5 2.3 21 278-298 8-28 (33)
287 3lpe_A Putative transcription 36.7 68 0.0023 23.1 5.4 34 66-103 40-73 (92)
288 1bb1_B Designed, thermostable 36.0 62 0.0021 18.5 3.8 23 288-310 13-35 (36)
289 3ts2_A Protein LIN-28 homolog 36.0 5.9 0.0002 31.7 -0.7 28 54-88 2-29 (148)
290 3a7p_A Autophagy protein 16; c 35.7 56 0.0019 26.2 5.0 23 285-307 76-98 (152)
291 1bb1_A Designed, thermostable 35.7 40 0.0014 19.3 3.0 22 288-309 13-34 (36)
292 2dgc_A Protein (GCN4); basic d 35.6 67 0.0023 21.5 4.8 28 280-307 33-60 (63)
293 2wuj_A Septum site-determining 35.6 30 0.001 22.8 2.9 24 277-300 34-57 (57)
294 1go4_E MAD1 (mitotic arrest de 35.3 57 0.002 24.2 4.7 33 277-309 12-44 (100)
295 2zxx_A Geminin; coiled-coil, c 34.6 82 0.0028 22.3 5.2 27 278-304 28-54 (79)
296 2qih_A Protein USPA1; trimeric 33.1 68 0.0023 25.2 5.0 29 277-305 96-124 (157)
297 1q08_A Zn(II)-responsive regul 32.9 36 0.0012 24.4 3.4 28 281-308 43-70 (99)
298 2wg5_A General control protein 32.9 34 0.0012 25.7 3.3 26 280-305 10-35 (109)
299 4fi5_A Nucleoprotein; structur 32.8 40 0.0014 25.5 3.5 19 290-308 68-86 (113)
300 4g2k_A General control protein 32.7 58 0.002 24.9 4.4 33 278-310 22-54 (125)
301 2xdj_A Uncharacterized protein 32.4 50 0.0017 23.6 3.9 26 284-309 27-52 (83)
302 2eqb_B RAB guanine nucleotide 31.9 78 0.0027 23.3 4.9 31 279-309 35-65 (97)
303 2wt7_A Proto-oncogene protein 31.8 92 0.0031 20.7 5.0 32 278-309 24-55 (63)
304 3twe_A Alpha4H; unknown functi 31.8 56 0.0019 17.5 3.0 21 287-307 4-24 (27)
305 1r8d_A Transcription activator 31.8 61 0.0021 23.8 4.6 29 281-309 79-107 (109)
306 3h7h_B Transcription elongatio 31.1 69 0.0024 23.9 4.7 36 65-104 40-75 (106)
307 1lwu_C Fibrinogen gamma chain; 30.8 64 0.0022 29.2 5.2 25 284-308 33-57 (323)
308 1t3j_A Mitofusin 1; coiled coi 30.8 68 0.0023 23.6 4.4 27 277-303 57-83 (96)
309 3okq_A BUD site selection prot 30.4 86 0.0029 24.7 5.2 26 284-309 54-79 (141)
310 3nmd_A CGMP dependent protein 29.8 1.1E+02 0.0038 21.2 5.1 23 285-307 41-63 (72)
311 1nkp_B MAX protein, MYC proto- 29.5 81 0.0028 22.1 4.7 36 274-309 37-79 (83)
312 1a93_A Coiled coil, LZ, MYC pr 29.1 72 0.0024 18.8 3.4 26 278-303 8-33 (34)
313 2wt7_B Transcription factor MA 29.0 1.2E+02 0.0041 22.0 5.5 26 284-309 62-87 (90)
314 1jcd_A Major outer membrane li 28.5 59 0.002 21.1 3.3 22 284-305 11-32 (52)
315 4bby_A Alkyldihydroxyacetoneph 28.4 38 0.0013 33.7 3.6 56 46-101 350-409 (658)
316 1ud0_A HSC70, 70 kDa heat-shoc 28.3 82 0.0028 23.2 4.8 36 274-309 32-72 (113)
317 1fzc_B Fibrin; blood coagulati 28.2 73 0.0025 28.8 5.2 32 278-309 31-62 (328)
318 3m91_A Proteasome-associated A 28.0 93 0.0032 20.0 4.2 25 280-304 26-50 (51)
319 1dip_A Delta-sleep-inducing pe 27.9 39 0.0013 23.6 2.5 11 290-300 21-31 (78)
320 3ni0_A Bone marrow stromal ant 27.8 86 0.0029 23.0 4.4 17 292-308 68-84 (99)
321 2lw1_A ABC transporter ATP-bin 27.6 69 0.0023 22.9 4.0 23 285-307 23-45 (89)
322 1nlw_A MAD protein, MAX dimeri 27.6 52 0.0018 23.2 3.3 34 275-308 38-78 (80)
323 1t2k_D Cyclic-AMP-dependent tr 27.3 1.2E+02 0.0042 19.8 5.0 31 278-308 23-53 (61)
324 1q08_A Zn(II)-responsive regul 27.2 95 0.0032 22.1 4.9 25 285-309 40-64 (99)
325 2w83_C C-JUN-amino-terminal ki 26.9 83 0.0029 22.1 4.1 28 280-307 33-60 (77)
326 1r8d_A Transcription activator 26.9 48 0.0017 24.4 3.2 25 285-309 76-100 (109)
327 1gmj_A ATPase inhibitor; coile 26.7 80 0.0027 22.6 4.1 24 285-308 52-75 (84)
328 3vmx_A Voltage-gated hydrogen 26.7 1.3E+02 0.0043 19.2 5.3 31 279-309 13-43 (48)
329 3b5n_B Protein SSO1; snare com 26.5 39 0.0013 23.0 2.4 21 290-310 9-29 (69)
330 4eyt_A Telomerase associated p 26.4 1.9E+02 0.0064 21.0 8.2 58 37-101 10-67 (129)
331 1nkp_A C-MYC, MYC proto-oncoge 26.3 82 0.0028 22.6 4.2 10 274-283 42-51 (88)
332 2p32_A Heat shock 70 kDa prote 26.3 98 0.0034 23.2 5.0 36 274-309 46-86 (120)
333 1hjb_A Ccaat/enhancer binding 26.2 1.2E+02 0.004 21.8 5.0 26 284-309 43-68 (87)
334 1jth_B Syntaxin 1A; coiled-coi 26.0 39 0.0013 23.5 2.4 21 290-310 9-29 (77)
335 2z5i_A TM, general control pro 25.9 1.3E+02 0.0045 19.3 4.7 31 279-309 14-44 (52)
336 3brv_B NF-kappa-B essential mo 25.7 1.3E+02 0.0045 20.6 4.8 29 278-306 13-41 (70)
337 1i4w_A Mitochondrial replicati 25.7 50 0.0017 30.2 3.7 22 41-62 144-165 (353)
338 1yhn_B RILP, RAB interacting l 25.6 66 0.0022 21.6 3.2 28 278-305 4-31 (65)
339 3hfe_A Potassium voltage-gated 25.6 45 0.0015 19.1 2.0 21 284-304 10-30 (31)
340 1hlo_A Protein (transcription 25.6 92 0.0031 21.7 4.3 32 274-305 47-78 (80)
341 1nlw_A MAD protein, MAX dimeri 25.4 1.4E+02 0.0049 20.8 5.3 26 278-303 55-80 (80)
342 2exu_A Transcription initiatio 25.3 71 0.0024 26.8 4.2 26 79-104 148-173 (200)
343 4e61_A Protein BIM1; EB1-like 25.3 88 0.003 23.4 4.2 19 285-303 19-37 (106)
344 3uzu_A Ribosomal RNA small sub 25.2 34 0.0012 30.0 2.4 33 40-72 115-147 (279)
345 3ni0_A Bone marrow stromal ant 25.0 1.1E+02 0.0039 22.3 4.6 24 281-304 64-87 (99)
346 3fut_A Dimethyladenosine trans 24.9 58 0.002 28.4 3.8 32 39-71 110-141 (271)
347 1fmh_A General control protein 24.8 1E+02 0.0034 17.3 3.7 20 278-297 5-28 (33)
348 3fry_A Probable copper-exporti 24.8 1.5E+02 0.005 19.2 5.9 54 40-99 7-60 (73)
349 1wt6_A Myotonin-protein kinase 24.7 1.1E+02 0.0037 21.7 4.4 27 278-304 46-72 (81)
350 3coq_A Regulatory protein GAL4 24.5 42 0.0014 23.5 2.3 16 288-303 49-64 (89)
351 3hd7_B Syntaxin-1A; membrane p 24.5 47 0.0016 24.8 2.7 29 282-310 12-40 (109)
352 3tso_C RAB11 family-interactin 24.4 99 0.0034 21.6 4.1 27 281-307 18-44 (75)
353 3qh9_A Liprin-beta-2; coiled-c 24.3 1.7E+02 0.0059 20.7 5.4 25 273-297 15-39 (81)
354 1pyi_A Protein (pyrimidine pat 24.3 49 0.0017 23.6 2.7 17 287-303 51-67 (96)
355 1n7s_B Syntaxin 1A; neuronal s 23.0 50 0.0017 22.3 2.4 21 290-310 11-31 (68)
356 3gpv_A Transcriptional regulat 22.9 1.1E+02 0.0039 23.8 4.9 27 282-308 100-126 (148)
357 1fxk_A Prefoldin; archaeal pro 22.4 1.4E+02 0.0048 21.5 5.1 27 284-310 79-105 (107)
358 2ocy_A RAB guanine nucleotide 22.0 1.3E+02 0.0043 24.1 4.9 36 276-311 114-149 (154)
359 1jnm_A Proto-oncogene C-JUN; B 21.6 1.8E+02 0.0061 19.1 5.3 32 278-309 23-54 (62)
360 1dh3_A Transcription factor CR 21.6 1.3E+02 0.0044 19.5 4.1 22 285-306 30-51 (55)
361 3m9b_A Proteasome-associated A 21.2 77 0.0026 27.5 3.7 22 284-305 75-96 (251)
362 1lq7_A Alpha3W; three helix bu 21.1 73 0.0025 20.7 2.6 11 291-301 55-65 (67)
363 2p32_A Heat shock 70 kDa prote 21.0 1.5E+02 0.0052 22.1 5.1 17 292-308 47-63 (120)
364 2gzd_C RAB11 family-interactin 20.9 42 0.0014 25.1 1.7 29 280-308 49-77 (107)
365 3gp4_A Transcriptional regulat 20.7 1.2E+02 0.0041 23.5 4.6 24 284-307 88-111 (142)
366 1nkp_B MAX protein, MYC proto- 20.4 1.5E+02 0.0052 20.6 4.7 26 278-303 55-80 (83)
367 1sfc_B Protein (syntaxin 1A), 20.2 82 0.0028 22.2 3.1 24 287-310 17-40 (83)
368 3hh0_A Transcriptional regulat 20.1 1.3E+02 0.0043 23.5 4.6 30 279-308 82-111 (146)
369 1q06_A Transcriptional regulat 20.1 1.5E+02 0.005 22.7 4.9 27 282-308 84-110 (135)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=8.9e-23 Score=197.49 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+.++|||+|||+.||+++|..+|.+||.|..|.|+.+..+ +++|||||+|.+.++|++||..|||+.|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44589999999999999999999999999999999998765 88999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=6.6e-21 Score=147.52 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
-.+++|||+|||+++|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|||..|+|++|.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999998776 89999999999999999999999999999999999999
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=8.5e-20 Score=152.25 Aligned_cols=88 Identities=22% Similarity=0.400 Sum_probs=81.2
Q ss_pred cCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
.....+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|++..|.|+.|.
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|+++.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999987554
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=136.06 Aligned_cols=85 Identities=34% Similarity=0.661 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999998765 89999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876553
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.2e-19 Score=145.85 Aligned_cols=88 Identities=24% Similarity=0.390 Sum_probs=80.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999988755 88999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
+++.+....
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876553
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=141.56 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+..+|||+|||+++++++|.++|++||.|..|.|+.++.+ +++|||||+|.+.++|++||+.|||..|.|+.|.|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999886 89999999999999999999999999999999999998
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=140.79 Aligned_cols=85 Identities=31% Similarity=0.665 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+..+|||+|||+++++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||+.|+|..|+|+.|.|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999886689999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87554
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=133.83 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+..+|||+|||.++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345789999999999999999999999999999999998655 8899999999999999999999999999999999999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=135.39 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9886553
No 10
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=138.14 Aligned_cols=86 Identities=36% Similarity=0.563 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+..+|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456799999999999999999999999999999999998775 889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9987544
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.4e-19 Score=131.29 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
+++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999988665 8899999999999999999999999999999999999987
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=137.05 Aligned_cols=87 Identities=22% Similarity=0.423 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999999998755 899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876553
No 13
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=135.10 Aligned_cols=86 Identities=31% Similarity=0.589 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|+++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+ |++..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999998765 789999999999999999999 99999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876553
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=137.35 Aligned_cols=87 Identities=30% Similarity=0.477 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999999999999999999999999999999998755 899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99876553
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.9e-18 Score=136.63 Aligned_cols=87 Identities=28% Similarity=0.522 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|+|..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998755 889999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876553
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=135.18 Aligned_cols=85 Identities=21% Similarity=0.476 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..++++|||||+|.+.++|++||+.|++..|+|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999999999999999986689999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=135.84 Aligned_cols=86 Identities=27% Similarity=0.550 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ .+.++|||||+|.+.++|++||..||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999988 558899999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876553
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=136.44 Aligned_cols=87 Identities=43% Similarity=0.786 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||+.||+..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999988766 789999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876553
No 19
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=141.29 Aligned_cols=87 Identities=33% Similarity=0.543 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
.....++|||+|||.++++++|.++|..||.|..|.|+.++.+ +++|||||+|.+.++|++||..|||..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455789999999999999999999999999999999998766 789999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 20
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=135.21 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEE-EEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.+.++|||+|||+++++++|.++|.+||.|..| .|+.++.+ .++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99988555 8899999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=136.53 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999988665 8899999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876553
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=138.24 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCC-ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcC-CCccCCeEEEEEEe
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN-GRTIDGRVVRVSEV 115 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~-g~~i~Gr~l~V~~a 115 (311)
+.+|||+|||+++|+++|.++|++|| .|..|.|+.++.+ .++|||||+|.+.++|++||+.|+ +..|+|++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999998776 899999999999999999999874 56799999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 23
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=133.42 Aligned_cols=86 Identities=24% Similarity=0.528 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||..|++..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999988655 889999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876553
No 24
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=134.69 Aligned_cols=85 Identities=18% Similarity=0.283 Sum_probs=78.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHH----HHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (311)
.+..+.++|||+|||+++++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|++||+.|||..|+|+.
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345567899999999999999999 99999999999999988776 889999999999999999999999999999
Q ss_pred EEEEEeccCCC
Q 021537 110 VRVSEVATRGR 120 (311)
Q Consensus 110 l~V~~a~~~~~ 120 (311)
|.|+++.+...
T Consensus 82 l~V~~a~~~~~ 92 (96)
T 2dgx_A 82 ILVSLATGASG 92 (96)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=9.2e-19 Score=138.49 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3345689999999999999999999999999999999998755 899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876553
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=6.6e-19 Score=139.69 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
.++|||+|||+++++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||+.|+|..|+|+.|.|.++.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999988644 7899999999999999999999999999999999998765
Q ss_pred CC
Q 021537 119 GR 120 (311)
Q Consensus 119 ~~ 120 (311)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=134.11 Aligned_cols=85 Identities=24% Similarity=0.523 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCC---C-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS---T-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~---~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.+.++|||+|||+++++++|.++|.+||.|..|.|+.+.. + .++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998765 3 68999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
.++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=136.10 Aligned_cols=84 Identities=25% Similarity=0.419 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|+|..|+|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999998775 8899999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98754
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=135.75 Aligned_cols=85 Identities=24% Similarity=0.489 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCC--CCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
+..+.++|||+|||+++++++|.++|.+|| |..|.|+.++. ++++|||||+|.+.++|++|| .|++..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345578999999999999999999999999 99999998876 478999999999999999999 89999999999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876553
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.8e-18 Score=134.42 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC---eEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG---RVVRVS 113 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G---r~l~V~ 113 (311)
.+.++|||+|||+++++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45799999999999999999999999999999999998866889999999999999999999999999998 999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.+....
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99876543
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=133.69 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||..|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999988655 689999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987554
No 32
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=136.29 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcC------CCccCC
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN------GRTIDG 107 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~------g~~i~G 107 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|+ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456789999999999999999999999999999999998776 789999999999999999999999 999999
Q ss_pred eEEEEEEeccCCCC
Q 021537 108 RVVRVSEVATRGRK 121 (311)
Q Consensus 108 r~l~V~~a~~~~~~ 121 (311)
+.|.|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=134.00 Aligned_cols=84 Identities=24% Similarity=0.496 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
+..+.++|||+|||+++++++|.++|.+|| |..|.|+.++.+ +++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999875 88999999999999999999 899999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 34
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=135.05 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhc-CCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc-cCCeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~-i~Gr~l~V~ 113 (311)
..+.++|||+|||+++++++|.++|.+ ||.|..|.|+.+..+.++|||||+|.+.++|++||..|++.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 356789999999999999999999999 999999999999855899999999999999999999999999 999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976554
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=134.96 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeC-CCC-CCceEEEEEeeChHHHHHHHHHc-CCCccCCeEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~-~~kg~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~ 111 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ..+ .++|||||+|.+.++|++||..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3455789999999999999999999999999999999988 444 88999999999999999999999 99999999999
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|.++.+...
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1.2e-18 Score=133.32 Aligned_cols=82 Identities=26% Similarity=0.558 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+.++|||+|||..+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++|++.|+|..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4679999999999999999999999999999999998765 889999999999999999999999999999999999998
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=9.5e-19 Score=130.55 Aligned_cols=80 Identities=28% Similarity=0.511 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|++.|||..|+|+.|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999988555 78999999999999999999999999999999999987
Q ss_pred c
Q 021537 116 A 116 (311)
Q Consensus 116 ~ 116 (311)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=134.62 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC-----eEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G-----r~l~ 111 (311)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45789999999999999999999999999999999875 799999999999999999999999999 9999
Q ss_pred EEEeccCC
Q 021537 112 VSEVATRG 119 (311)
Q Consensus 112 V~~a~~~~ 119 (311)
|+++.++.
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998743
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.9e-18 Score=134.66 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||+.|+|..|.|+.|.|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999999866899999999999999999999999999999999999
Q ss_pred Eec
Q 021537 114 EVA 116 (311)
Q Consensus 114 ~a~ 116 (311)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=136.62 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCc--eEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCC----ccCCeEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGS--VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVV 110 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~----~i~Gr~l 110 (311)
.-.||||+|||+++|+++|.++|++||. |..|.|+.++.+ +++|||||+|.+.++|++||+.|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 668999998876 89999999999999999999999997 4899999
Q ss_pred EEEEecc
Q 021537 111 RVSEVAT 117 (311)
Q Consensus 111 ~V~~a~~ 117 (311)
.|++|+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.43 Aligned_cols=82 Identities=32% Similarity=0.529 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34568999999999999999999999999999999999887788999999999999999999999999999999999987
Q ss_pred cc
Q 021537 116 AT 117 (311)
Q Consensus 116 ~~ 117 (311)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 42
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=132.32 Aligned_cols=83 Identities=36% Similarity=0.565 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+..+|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3455789999999999999999999999999999999998776 889999999999999999999999999999999999
Q ss_pred Eecc
Q 021537 114 EVAT 117 (311)
Q Consensus 114 ~a~~ 117 (311)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=133.94 Aligned_cols=87 Identities=24% Similarity=0.436 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceE-EEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeE--
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-- 109 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~-- 109 (311)
....+..+|||+|||+++++++|.++|.+||.|. .|.|+.++.+ .++|||||+|.+.++|++||..|||..|.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3445679999999999999999999999999999 9999998765 89999999999999999999999999999999
Q ss_pred --EEEEEeccCCC
Q 021537 110 --VRVSEVATRGR 120 (311)
Q Consensus 110 --l~V~~a~~~~~ 120 (311)
|.|.++.+...
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987544
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.7e-18 Score=136.34 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=76.6
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999988665 88999999999999999999999999999999999
Q ss_pred EEec
Q 021537 113 SEVA 116 (311)
Q Consensus 113 ~~a~ 116 (311)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 45
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=133.63 Aligned_cols=83 Identities=28% Similarity=0.452 Sum_probs=76.9
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEE--------EEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
.+..+.++|||+|||+++++++|.++|.+||.|.. |.|+.++.+ .++|||||+|.+.++|++||+.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556799999999999999999999999999999 999998765 889999999999999999999999999
Q ss_pred cCCeEEEEEEec
Q 021537 105 IDGRVVRVSEVA 116 (311)
Q Consensus 105 i~Gr~l~V~~a~ 116 (311)
|.|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=134.65 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|++||..|++ .|.|+.|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 345789999999999999999999999999999999998766 8999999999999999999999998 89999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976544
No 47
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.57 Aligned_cols=81 Identities=33% Similarity=0.607 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345789999999999999999999999999999999998775 8899999999999999999999999999999999999
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.7e-18 Score=135.81 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|+|..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 455789999999999999999999999999999999988765 8899999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987654
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.6e-18 Score=134.96 Aligned_cols=86 Identities=21% Similarity=0.456 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCcc---CCeEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVV 110 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i---~Gr~l 110 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|++||..||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999998775 8899999999999999999999999988 89999
Q ss_pred EEEEeccCCC
Q 021537 111 RVSEVATRGR 120 (311)
Q Consensus 111 ~V~~a~~~~~ 120 (311)
.|.++.+...
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8e-18 Score=132.65 Aligned_cols=84 Identities=29% Similarity=0.368 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|+++|.+||.|..|.|+.++.++++|||||+|.+.++|+.||..||+..|.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 45578999999999999999999999999999999999887788999999999999999999999999999999999998
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7543
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=130.03 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-C-CceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R-GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~-~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+++|||+|||+++++++|.++|.+||.|..|.|+.+..+ . ++|||||+|.+.++|++|+..|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999988765 3 8899999999999999999999999999999999999
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 52
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.6e-18 Score=130.17 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|+++|.+||.|..|.|+.+ .+.++|||||+|.+.++|++||..|++..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456789999999999999999999999999999999874 4578999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87654
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=133.97 Aligned_cols=85 Identities=29% Similarity=0.533 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|..+ ..++|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3455789999999999999999999999999999999654 24789999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876543
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=136.35 Aligned_cols=86 Identities=31% Similarity=0.637 Sum_probs=79.0
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||+.|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999988665 78999999999999999999999999999999999
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9997653
No 55
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=3.9e-19 Score=134.65 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC--ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.+|||+|||+++++++|.++|.+|| .|..|.|+.++.+ +++|||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999998765 899999999999999999999999999999999999998
Q ss_pred cCCC
Q 021537 117 TRGR 120 (311)
Q Consensus 117 ~~~~ 120 (311)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=135.80 Aligned_cols=87 Identities=26% Similarity=0.407 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceE--------EEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
...+.++|||+|||+.+++++|.++|.+||.|. .|.|+.++.+ +++|||||+|.+.++|++||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 6999988655 8899999999999999999999999999
Q ss_pred CCeEEEEEEeccCCCC
Q 021537 106 DGRVVRVSEVATRGRK 121 (311)
Q Consensus 106 ~Gr~l~V~~a~~~~~~ 121 (311)
.|+.|.|.++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876553
No 57
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1e-17 Score=134.21 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||..|+|..|+|+.|.|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45667999999999999999999999999999999999988558999999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
|.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987544
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=6.3e-19 Score=136.34 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=76.4
Q ss_pred CCceEEEcCCCC------CCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCC-eE
Q 021537 38 DESSVYVGGLPY------SANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RV 109 (311)
Q Consensus 38 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G-r~ 109 (311)
..++|||+|||+ ++++++|.++|++||.|..|.|+.++.+ +++|||||+|.+.++|++||+.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 9999999999999999999999999875 899999999999999999999999999999 99
Q ss_pred EEEEEeccC
Q 021537 110 VRVSEVATR 118 (311)
Q Consensus 110 l~V~~a~~~ 118 (311)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 59
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.5e-18 Score=143.97 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456789999999999999999999999999999999998665 889999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.+...
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987654
No 60
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-18 Score=134.85 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
....+|||+|||+++|+++|.++|++||.|..|.|+.++.+.++|||||+|.+.++|+.||. +++..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34589999999999999999999999999999999998778899999999999999999999 89999999999999875
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.2e-18 Score=127.62 Aligned_cols=79 Identities=25% Similarity=0.485 Sum_probs=74.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..+|||+|||+++++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999998755 88999999999999999999 8999999999999999876
Q ss_pred C
Q 021537 118 R 118 (311)
Q Consensus 118 ~ 118 (311)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 62
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=135.32 Aligned_cols=86 Identities=27% Similarity=0.358 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHH---HHhhcCCceEEEEEeeCCCC----CCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 35 TIDDESSVYVGGLPYSANEDSVR---KVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~~----~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
......+|||+|||+++++++|. ++|.+||.|..|.|+.+..+ .++|||||+|.+.++|++||+.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 99999999999999988653 466999999999999999999999999999
Q ss_pred eEEEEEEeccCCC
Q 021537 108 RVVRVSEVATRGR 120 (311)
Q Consensus 108 r~l~V~~a~~~~~ 120 (311)
+.|.|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987653
No 63
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=8.1e-18 Score=130.47 Aligned_cols=79 Identities=25% Similarity=0.525 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|.++|.+||.|..|.|+ ++||||+|.+.++|++||..|++..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4557899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876553
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=133.39 Aligned_cols=85 Identities=31% Similarity=0.658 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+++++++|+++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||.. ++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 456789999999999999999999999999999999998765 8999999999999999999998 99999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876553
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=134.68 Aligned_cols=85 Identities=25% Similarity=0.546 Sum_probs=77.9
Q ss_pred cCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.......++|||+|||.++++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++|+..|+|..|+|+.|.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344566799999999999999999999999999999999987544 7899999999999999999999999999999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
+++.++
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 66
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=7.6e-18 Score=126.35 Aligned_cols=80 Identities=28% Similarity=0.608 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+ +++..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999998765 899999999999999999997 58889999999998
Q ss_pred Ee
Q 021537 114 EV 115 (311)
Q Consensus 114 ~a 115 (311)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 67
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=127.26 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.....+|||+|||+++++++|+++|.+| .|..|.|+.+..++++|||||+|.+.++|++||. ||+..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3457899999999999999999999999 9999999998666899999999999999999999 9999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87643
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=129.32 Aligned_cols=86 Identities=26% Similarity=0.500 Sum_probs=77.8
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||. +++.|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34556789999999999999999999999999999999998765 899999999999999999998 478999999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999876553
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=142.27 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCC--ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+|||+|||+++++++|.++|.+|| .|..|.|+.++.+ +++|||||+|.+.++|++||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 965
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=2.9e-18 Score=138.92 Aligned_cols=86 Identities=35% Similarity=0.531 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|+|..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999998776 89999999999999999999999999999999999
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
+++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 71
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=126.97 Aligned_cols=79 Identities=28% Similarity=0.589 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|.++|.+||.|..|.|+ +|||||+|.+.++|++||..||+..|.|+.|.|+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 3467899999999999999999999999999999996 579999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
.+....
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876553
No 72
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=2.5e-18 Score=136.38 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeE-----EE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-----VR 111 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~-----l~ 111 (311)
...++|||+|||+++++++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34689999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEEecc
Q 021537 112 VSEVAT 117 (311)
Q Consensus 112 V~~a~~ 117 (311)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 73
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=132.97 Aligned_cols=85 Identities=22% Similarity=0.406 Sum_probs=75.6
Q ss_pred cCCCCCCceEEEcCCCCCC------cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 33 KMTIDDESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
.......++|||+|||+.+ ++++|..+|++||.|..|.|+ ...++++|||||+|.+.++|+.||..|||..|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3344557899999999999 789999999999999999988 344578999999999999999999999999999
Q ss_pred Ce-EEEEEEeccC
Q 021537 107 GR-VVRVSEVATR 118 (311)
Q Consensus 107 Gr-~l~V~~a~~~ 118 (311)
|+ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 74
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=131.49 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+++++++|+++|.+||.|..+.++.+..+ +++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999998877776555 8899999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 75
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=4.2e-18 Score=127.97 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.....|||+||++.+|+++|.++|.+||+|..+.+.. ++|||||+|.+.++|++|++.||+..+.|++|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4467899999999999999999999999999999976 68999999999999999999999999999999999984
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-18 Score=133.26 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCC--CccCCeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g--~~i~Gr~l~V~ 113 (311)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.||+.|++ ..|.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999999874 78999999999999999998864 78999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 77
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=134.04 Aligned_cols=82 Identities=27% Similarity=0.590 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||.. ++..|+|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 589999999999999999999999999999999998765 8999999999999999999997 99999999999999987
Q ss_pred CCCC
Q 021537 118 RGRK 121 (311)
Q Consensus 118 ~~~~ 121 (311)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6553
No 78
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-18 Score=131.74 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=73.2
Q ss_pred cCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.......++|||+|||.++++++|..+|.+||.|..|.|+. ++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34445578999999999999999999999999999999983 5789999999999999999999999999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
.++++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=131.04 Aligned_cols=82 Identities=24% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...++|||+|||+++|+++|+++|.+||.| .|.|+.++.++++|||||+|.+.++|++||+ +|+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 446899999999999999999999999955 9999999866999999999999999999995 89999999999999887
Q ss_pred cCCC
Q 021537 117 TRGR 120 (311)
Q Consensus 117 ~~~~ 120 (311)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 80
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=7.4e-18 Score=130.36 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc--cCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~--i~Gr~l~V 112 (311)
...+..+|||+|||+.+|+++|.++|++||.|..|.|+. .+|||||+|.+.++|.+|+..|++.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 445678999999999999999999999999999999975 47899999999999999999999875 78999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
++++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 81
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=129.39 Aligned_cols=82 Identities=29% Similarity=0.571 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|+++|.+||.| .|+.+..++++|||||+|.+.++|++||..||+..|.|+.|.|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457999999999999999999999999987 4566655588999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=133.26 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCC--CCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
.....++|||+|||+++++++|.++|.+|| |..|.|+.+. .++++|||||+|.+.++|++|| .|+|..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 445679999999999999999999999999 9999999887 3489999999999999999999 79999999999999
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
+++.+..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 83
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=131.74 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC--ccCCeEEE
Q 021537 35 TIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~--~i~Gr~l~ 111 (311)
...+..+|||+|||+ ++++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|+.||+.|++. .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 345688999999999 9999999999999999999999864 579999999999999999998864 59999999
Q ss_pred EEEeccCC
Q 021537 112 VSEVATRG 119 (311)
Q Consensus 112 V~~a~~~~ 119 (311)
|.++.+..
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998644
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=1e-18 Score=155.13 Aligned_cols=80 Identities=18% Similarity=0.432 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCC--ceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..++|||+|||+++|+++|+++|.+|| .|..|.|+.++.+ +++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999999999766 8999999999999999999999999999999999999
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.3e-18 Score=133.05 Aligned_cols=80 Identities=24% Similarity=0.364 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++|| .||+..|+|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999998875 88999999999999999999 8999999999999999976
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.2e-18 Score=130.44 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+.++|||+|||+++++++|+++|.+||.|..+.++.+..+ .++|||||+|.+.++|++||+.||+..|+|+.|.|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999998888877665 889999999999999999999999999999999999875
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 87
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=128.22 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHc--CCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l--~g~~i~Gr~l~V 112 (311)
...+..+|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|+.|++.| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999988764 789999999999999999977 467899999999
Q ss_pred EEeccCCCC
Q 021537 113 SEVATRGRK 121 (311)
Q Consensus 113 ~~a~~~~~~ 121 (311)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876543
No 88
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=125.42 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+. +||||+|.+.++|++||..||+..|.|+.|.|++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 345678999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876553
No 89
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=127.82 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC--CeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~--Gr~l~V~ 113 (311)
..+.++|||+|||+++++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 345689999999999999999999999999999998764 689999999999999999999999999 9999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.++..
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=131.10 Aligned_cols=81 Identities=37% Similarity=0.762 Sum_probs=76.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|+|..|+|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 479999999999999999999999999999999988655 7899999999999999999999999999999999999976
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 91
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.7e-17 Score=126.47 Aligned_cols=79 Identities=32% Similarity=0.560 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcC--CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
...+.++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 999999874 579999999999999999999999999999999
Q ss_pred EEeccCCC
Q 021537 113 SEVATRGR 120 (311)
Q Consensus 113 ~~a~~~~~ 120 (311)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=129.39 Aligned_cols=85 Identities=15% Similarity=0.287 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCc-eEEEEEe-eCCCC-CCceEEEEEeeChHHHHHHHHHcC--CCccCCeEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIV-NDRST-RGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~ 111 (311)
.+.++|||+|||+++++++|.++|.+||. |..|.|+ .+..+ .++|||||+|.+.++|+.||..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 66665 789999999999999999999996 5899999999
Q ss_pred EEEeccCCCC
Q 021537 112 VSEVATRGRK 121 (311)
Q Consensus 112 V~~a~~~~~~ 121 (311)
|.++.+....
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876553
No 93
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-18 Score=129.08 Aligned_cols=79 Identities=27% Similarity=0.549 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999998765 88999999999999999999999999999999987654
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=130.75 Aligned_cols=84 Identities=20% Similarity=0.458 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+++++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|++||..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345789999999999999999999999999999999998765 89999999999999999999976 5999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987644
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=130.28 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc--------CC
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--------DG 107 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i--------~G 107 (311)
..+.++|||+|||+++++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|+.||..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457899999999999999999999999999999999998558999999999999999999999999999 57
Q ss_pred eEEEEEEeccC
Q 021537 108 RVVRVSEVATR 118 (311)
Q Consensus 108 r~l~V~~a~~~ 118 (311)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999864
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=1.7e-17 Score=138.23 Aligned_cols=85 Identities=36% Similarity=0.617 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+++++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999998755 8999999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987544
No 97
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=132.35 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC--CCccCCeEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~ 111 (311)
....+..+|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|+ +..|.|++|.
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 34556789999999999999999999999999999999874 7899999999999999999887 4689999999
Q ss_pred EEEeccCCCC
Q 021537 112 VSEVATRGRK 121 (311)
Q Consensus 112 V~~a~~~~~~ 121 (311)
|.++.++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.07 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
++|||+|||+++++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999887 68899999999999999999999999999999999998765
Q ss_pred C
Q 021537 120 R 120 (311)
Q Consensus 120 ~ 120 (311)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2e-17 Score=132.43 Aligned_cols=81 Identities=26% Similarity=0.475 Sum_probs=75.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|| .|+|..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999998655 88999999999999999999 7999999999999999876
Q ss_pred CCC
Q 021537 118 RGR 120 (311)
Q Consensus 118 ~~~ 120 (311)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 443
No 100
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=127.51 Aligned_cols=84 Identities=29% Similarity=0.479 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|+++|..|+ .|.++.+..+ .++|||||+|.+.++|++||..||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999884 5667777655 789999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 021537 114 EVATRGRK 121 (311)
Q Consensus 114 ~a~~~~~~ 121 (311)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876553
No 101
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=128.31 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEE-EEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+++++++|.++|.+||.|.. |.|+.+..++++|||||+|.+.++|++||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345789999999999999999999999999997 8888886668999999999999999999996 99999999999998
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 102
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=4.7e-18 Score=123.91 Aligned_cols=74 Identities=24% Similarity=0.535 Sum_probs=69.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
+|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++|++ |++..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999988755 899999999999999999998 9999999999999875
No 103
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2.6e-17 Score=126.57 Aligned_cols=79 Identities=23% Similarity=0.522 Sum_probs=71.7
Q ss_pred CCCCCCceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 34 MTIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....+.++|||+|||+ ++++++|.++|.+||.|..|.| .+|||||+|.+.++|++||..|+|..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3455679999999998 9999999999999999999998 3789999999999999999999999999999999
Q ss_pred EEeccCC
Q 021537 113 SEVATRG 119 (311)
Q Consensus 113 ~~a~~~~ 119 (311)
+++.+..
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9987643
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=124.57 Aligned_cols=78 Identities=22% Similarity=0.487 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|||+++++++|..+|.+||.|..|.|+. +||||+|.+.++|++||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 45678999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 105
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=128.93 Aligned_cols=81 Identities=28% Similarity=0.537 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....++|||+|||..+++++|..+|.+||.|..|.|+.+ +|||||+|.+.++|+.||..|+|..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345789999999999999999999999999999999875 789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
.+....
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 106
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=9.5e-18 Score=133.68 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCc---eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...++|||+|||+++|+++|.++|..||. |..|.|+.+..++++|||||+|.+.++|++||+ |++..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999999 899999998888899999999999999999999 99999999999999
Q ss_pred EeccC
Q 021537 114 EVATR 118 (311)
Q Consensus 114 ~a~~~ 118 (311)
++.+.
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=134.21 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHH----HHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
...+..+|||+|||+.+++++|+ ++|++||.|..|.+.. .++++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 34567899999999999998865 7999999999988753 34789999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 021537 111 RVSEVATRG 119 (311)
Q Consensus 111 ~V~~a~~~~ 119 (311)
.|.++.++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=126.28 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+..+|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999853 78999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987554
No 109
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=132.49 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCce-EEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+..+|||+|||+++++++|.++|..||.| ..|.|+.++.++++|||||+|.+.++|++||.. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 889999998668999999999999999999996 999999999999999
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
.+..
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7643
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=1.8e-17 Score=130.07 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+ +|||||+|.+.++|++|+..|+|..|+|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1e-17 Score=132.30 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCC-ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+++++++|+++|.+|| .|..|.|+.. .++|||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999 8999988532 3789999999999999999999999999999999999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8654
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-18 Score=137.30 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEE--EEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCC----ccCCe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGR 108 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~----~i~Gr 108 (311)
.....+|||+|||+++++++|.++|.+||.|.. |.|+.++.+ +++|||||+|.+. +|.+||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355789999999999999999999999999976 999999855 8999999999999 999999999999 99999
Q ss_pred EEEEEEeccCCC
Q 021537 109 VVRVSEVATRGR 120 (311)
Q Consensus 109 ~l~V~~a~~~~~ 120 (311)
.|.|+++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987544
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.9e-18 Score=123.14 Aligned_cols=75 Identities=21% Similarity=0.534 Sum_probs=71.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++|+..++ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998765 899999999999999999999999 9999999999986
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=127.84 Aligned_cols=79 Identities=25% Similarity=0.562 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+ .+++++|..+|.+||.|..|.|. +|||||+|.+.++|+.||..|+|..|.|+.|.|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999 99999999999999999999984 67999999999999999999999999999999999
Q ss_pred eccCCCC
Q 021537 115 VATRGRK 121 (311)
Q Consensus 115 a~~~~~~ 121 (311)
+.+....
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876553
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=127.49 Aligned_cols=80 Identities=21% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC--ccCCeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~--~i~Gr~l~V~ 113 (311)
..+..+|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|.+|++.|++. .|.|++|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999999999999999999999999998763 789999999999999999988754 5999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987544
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=7.3e-18 Score=137.61 Aligned_cols=86 Identities=36% Similarity=0.610 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||..|+|..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445789999999999999999999999999999999988755 899999999999999999999999999999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.+...
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987554
No 117
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=129.95 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCce----EEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
..+.++|||+|||+++++++|.++|.+||.| ..+.+. .++++|||||+|.+.++|+.||..|+|..|.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4467899999999999999999999999999 455554 346899999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 021537 112 VSEVATRGRK 121 (311)
Q Consensus 112 V~~a~~~~~~ 121 (311)
|.++.+....
T Consensus 99 v~~a~~~~~~ 108 (115)
T 2cpx_A 99 IEFGKNKKQR 108 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEccCCCCC
Confidence 9999876553
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=3.3e-17 Score=129.39 Aligned_cols=83 Identities=18% Similarity=0.402 Sum_probs=75.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
+..+..+|||+|||+.+++++|..+|.+||.|..|.|+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999998653 3589999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97643
No 119
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=125.46 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCc-eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCC-CccCCeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG-RTIDGRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g-~~i~Gr~l~V~ 113 (311)
....++|||+|||+++++++|+++|.+||. |..+.+. ++|||||+|.+.++|++||+.||| ..|+|+.|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 345789999999999999999999999999 6666553 478999999999999999999999 99999999999
Q ss_pred EeccCCC
Q 021537 114 EVATRGR 120 (311)
Q Consensus 114 ~a~~~~~ 120 (311)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987644
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=126.34 Aligned_cols=79 Identities=20% Similarity=0.381 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
...++|||+|||+++++++|+++|.+||.|. +.++.+ .++|||||+|.+.++|+.||..|||..|+|+.|.|+++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4468999999999999999999999999997 666543 478999999999999999999999999999999999998
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=121.78 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHc-CCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~V~~ 114 (311)
..+..+|||+|||..+++++|.++|.+||.|..|.|+. .+|||||+|.+.++|+.|+..| ++..|+|+.|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34568999999999999999999999999999999986 3789999999999999999999 99999999999998
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=133.41 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+..+|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||+.|+|..|+|+.|.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999999988665 899999999999999999999999999999999998
Q ss_pred Ee
Q 021537 114 EV 115 (311)
Q Consensus 114 ~a 115 (311)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 123
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.5e-17 Score=136.09 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCc---eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
....++|||+|||+++|+++|.++|.+||. |..|.|+.++.++++|||||+|.+.++|++||+ ||+..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 455789999999999999999999999999 889999998888899999999999999999999 9999999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98864
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=123.86 Aligned_cols=73 Identities=26% Similarity=0.526 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCC------cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe-EEE
Q 021537 39 ESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVR 111 (311)
Q Consensus 39 ~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr-~l~ 111 (311)
.++|||+|||+.+ ++++|.++|++||.|..|.|+ ...++++|||||+|.+.++|++||..|||..|+|+ +|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 789999999999999999987 33457899999999999999999999999999999 887
Q ss_pred E
Q 021537 112 V 112 (311)
Q Consensus 112 V 112 (311)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=5.1e-18 Score=128.14 Aligned_cols=80 Identities=34% Similarity=0.676 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
++|||+|||.++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.+ |..|+..|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999988775 88999999999999 99999999999999999999999775
Q ss_pred CC
Q 021537 119 GR 120 (311)
Q Consensus 119 ~~ 120 (311)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 126
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=133.45 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEE-eeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI-VNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
+....++|||+|||+++++++|.++|..||.|..+.+ .....++++|||||+|.+.++|++||. ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999999988444 444455889999999999999999999 99999999999999
Q ss_pred EeccC
Q 021537 114 EVATR 118 (311)
Q Consensus 114 ~a~~~ 118 (311)
++.+.
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 127
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=5.1e-17 Score=127.46 Aligned_cols=77 Identities=29% Similarity=0.524 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
....++|||+|||+. +++++|.++|.+||.|..|.| ++|||||+|.+.++|+.||..|++..|+|+.|.|++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344689999999999 999999999999999999998 468999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-18 Score=131.51 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCc---eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
.....++|||+|||+++|+++|.++|..||. |..|.|+.++.++++|||||+|.+.++|++||. |++..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4456799999999999999999999999998 899999998888899999999999999999999 999999999999
Q ss_pred EEEeccC
Q 021537 112 VSEVATR 118 (311)
Q Consensus 112 V~~a~~~ 118 (311)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 129
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-18 Score=138.31 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEE--------EEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
.+..+|||+|||+.+++++|.++|.+||.|.. |.|+.++.+ .++|||||+|.+.++|++||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 889888665 889999999999999999999999999999
Q ss_pred eEEEEEEeccCCCC
Q 021537 108 RVVRVSEVATRGRK 121 (311)
Q Consensus 108 r~l~V~~a~~~~~~ 121 (311)
+.|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876553
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=128.49 Aligned_cols=78 Identities=33% Similarity=0.487 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
..+|||+|||+++++++|+++|..| .|..|.|+.++.++++|||||+|.+.++|++|| .||+..|+|+.|.|..+.+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 899999999888889999999999999999999 59999999999999888653
No 131
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=1.7e-17 Score=126.94 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
..+.++|||+|||+++++++|. ++|.+||.|..|.|+. .+.++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567899999999999999999 9999999999998873 235679999999999999999999999999999999
Q ss_pred EEEeccCC
Q 021537 112 VSEVATRG 119 (311)
Q Consensus 112 V~~a~~~~ 119 (311)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 132
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=8.7e-18 Score=137.92 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
......+|||+|||+++|+++|+++|.+|| |+.|.|+.++.++++|||||+|.+.++|++|| .+|+..|+|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345578999999999999999999999999 67999999887889999999999999999999 6999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876544
No 133
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=130.43 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC--CCccCCeEEE
Q 021537 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~--g~~i~Gr~l~ 111 (311)
...+..+|||+|||++ +++++|.++|.+||.|..|.|+. .+|||||+|.+.++|+.||+.|+ +..|.|++|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3556889999999998 99999999999999999999975 47899999999999999999886 4569999999
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|.++.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976544
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=5.7e-17 Score=138.36 Aligned_cols=84 Identities=21% Similarity=0.434 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|++||+.|+|..|+|+.|.|++
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999988558999999999999999999999999999999999999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
|.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9764
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=124.99 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+..+|||+|||+.+++++|.++|.+||.|..+ ...+.++|||||+|.+.++|++||..|+|..|+|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988766 233468999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 136
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-17 Score=127.89 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
.++|||+|||+.+++++|.++|.+||.|..|.|+. .+|||||+|.+.++|+.||..|||..|.|+.|.|+|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57999999999999999999999999999998874 5789999999999999999999999999999999999754
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-18 Score=130.04 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+..+|||+|||+++++++|.++|.+||.|.. .++.+..+ .++|||||+|.+.++|++||+ |||..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999887 44444443 789999999999999999999 9999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87544
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=7.3e-17 Score=133.50 Aligned_cols=82 Identities=30% Similarity=0.535 Sum_probs=75.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456799999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred EeccCC
Q 021537 114 EVATRG 119 (311)
Q Consensus 114 ~a~~~~ 119 (311)
++.++.
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998754
No 139
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=120.06 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|| ++++++|.++|.+||.|..|.|. .++|||||+|.+.++|++||..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 445789999996 89999999999999999999985 36789999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=6.2e-17 Score=125.06 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..++|||+|||+++++++|..+|.+||.|..|.|+.+..+.++|||||+|.+.++|++||. ++..|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4589999999999999999999999999999999999855899999999999999999998 99999999999999986
Q ss_pred CCC
Q 021537 118 RGR 120 (311)
Q Consensus 118 ~~~ 120 (311)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.4e-17 Score=120.01 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=69.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
+|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||. +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999988765 889999999999999999999 5899999999999875
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2.2e-16 Score=138.00 Aligned_cols=83 Identities=28% Similarity=0.431 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+++|+++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.||..|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 345689999999999999999999999999999999998776 8999999999999999999999999999999999998
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7543
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=130.45 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCce----EEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
...++|||+|||+++|+++|+++|.+||.| ..|.|+.+..++++|||||+|.+.++|++||.. ++..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999976 689999887668999999999999999999995 999999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 144
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=118.76 Aligned_cols=79 Identities=20% Similarity=0.401 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
....+|||+|||+++++++|..+|.+||.|..| +.+..+. + ||||+|.+.++|++||. |+|..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g-~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG-V-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC-C-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC-c-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 4443331 2 99999999999999999 99999999999999886
Q ss_pred cCCC
Q 021537 117 TRGR 120 (311)
Q Consensus 117 ~~~~ 120 (311)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 5443
No 145
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.2e-16 Score=128.84 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceE--EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
......+|||+|||+++|+++|+++|.+| .|. .|.|+.++.++++|||||+|.+.++|++||+ +++..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34557899999999999999999999999 676 8999998888899999999999999999998 5789999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88864
No 146
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=8.8e-17 Score=131.96 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEE------EEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV------KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v------~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr 108 (311)
+..+.++|||+|||+.+++++|..+|.+||.|..| .+.....++++|||||+|.+.++|.+||..|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35677999999999999999999999999998764 121123457899999999999999999999999999999
Q ss_pred EEEEEEeccCCC
Q 021537 109 VVRVSEVATRGR 120 (311)
Q Consensus 109 ~l~V~~a~~~~~ 120 (311)
.|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 147
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=124.63 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=73.4
Q ss_pred cCCCCCCceEEE--cCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc-----
Q 021537 33 KMTIDDESSVYV--GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI----- 105 (311)
Q Consensus 33 ~~~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i----- 105 (311)
.....+..+||| |||++++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 444566789999 78999999999999999999999998864 378999999999999999999999988
Q ss_pred CCeEEEEEEeccCCC
Q 021537 106 DGRVVRVSEVATRGR 120 (311)
Q Consensus 106 ~Gr~l~V~~a~~~~~ 120 (311)
.|++|.|.++...+.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 689999999976544
No 148
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=4.4e-16 Score=125.96 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceE-EEEEeeChHHHHHHHHHcCCCccCC--eEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVS 113 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~-aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~ 113 (311)
..-..|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34467889999999999999999999999999988764 4678 9999999999999999999999988 899999
Q ss_pred EeccCC
Q 021537 114 EVATRG 119 (311)
Q Consensus 114 ~a~~~~ 119 (311)
|+++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998754
No 149
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=5.3e-16 Score=130.13 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC--eEEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~ 114 (311)
....+|||+||++.+++++|+++|++||.|..|.|.... .+|||||+|.+.++|+.|++.|||..|.| +.|+|+|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 334678999999999999999999999999999987542 57899999999999999999999999965 9999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98764
No 150
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.7e-16 Score=118.40 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
...+|||+|||+++++++|+++|.+| .|..|.|. +++|||||+|.+.++|++|++.|||..|+|+.|.|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999885 3789999999999999999999999999999999999865
Q ss_pred C
Q 021537 118 R 118 (311)
Q Consensus 118 ~ 118 (311)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=119.92 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEE-EEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
...++|||+|||+++++++|..+|.+||.|..| .|+.++.+ +.|||+|.+.++|+.||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346899999999999999999999999999999 57776543 44999999999999999999999999999999999
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.7e-16 Score=127.31 Aligned_cols=82 Identities=28% Similarity=0.587 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~ 113 (311)
...+..+|||+|||+.+++++|.++|.+||.|..|.++.+..+ .++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 4456789999999999999999999999999999999998665 889999999999999999999999999999999999
Q ss_pred Eec
Q 021537 114 EVA 116 (311)
Q Consensus 114 ~a~ 116 (311)
+|.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 153
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=4.9e-16 Score=117.57 Aligned_cols=78 Identities=27% Similarity=0.456 Sum_probs=63.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc--cCCeEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRV 112 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~--i~Gr~l~V 112 (311)
+..+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 3456789999999999999999999999999999999875 78999999999999984 34544 56999999
Q ss_pred EEeccCCC
Q 021537 113 SEVATRGR 120 (311)
Q Consensus 113 ~~a~~~~~ 120 (311)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987543
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.1e-15 Score=126.94 Aligned_cols=81 Identities=28% Similarity=0.545 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|..||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999998744 8899999999999999999999999999999999999876
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=6.4e-16 Score=128.68 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+.++|||+|||+++++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999988655 789999999999999999999999999999999999987
Q ss_pred cCC
Q 021537 117 TRG 119 (311)
Q Consensus 117 ~~~ 119 (311)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.3e-15 Score=122.45 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceE-EEEEeeChHHHHHHHHHcCCCccCC--eEEEEEEe
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEV 115 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~-aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V~~a 115 (311)
...|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|.|++|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 345789999999999999999999999999998753 276 9999999999999999999999987 69999999
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1.7e-15 Score=131.44 Aligned_cols=84 Identities=25% Similarity=0.517 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+|||+|||..+++++|.++|.+||.|..|.|+.+..+ +++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999998655 88999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87654
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-15 Score=126.17 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=74.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~ 119 (311)
.+|||+|||+++++++|.++|.+||.|..|.|+.++.++++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999999888899999999999999999999999999999999999987654
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-16 Score=117.80 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
.+.++|||+|||+++++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 789999999999999865432 345689999999988
Q ss_pred cCCCC
Q 021537 117 TRGRK 121 (311)
Q Consensus 117 ~~~~~ 121 (311)
++...
T Consensus 77 ~~~~~ 81 (88)
T 1wf0_A 77 PKHNS 81 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=8.2e-16 Score=134.34 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=74.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~ 118 (311)
..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|++||+.|||..|+|+.|.|.++.++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 468999999999999999999999999999999987544 7899999999999999999999999999999999999764
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=2e-15 Score=129.13 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999998744 88999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=8.6e-16 Score=123.06 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred ceEEEcCC----CCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeC----hHH----HHHHHH--HcCCCc
Q 021537 40 SSVYVGGL----PYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGN----PRS----AVDAIN--DMNGRT 104 (311)
Q Consensus 40 ~~lfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~----~~~----A~~Al~--~l~g~~ 104 (311)
..|||+|| |+.+++.+|+.+|+.||+|..|.++.|+.| .++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999998 999999999996 433 888988 789999
Q ss_pred cCCeEEEEEEec
Q 021537 105 IDGRVVRVSEVA 116 (311)
Q Consensus 105 i~Gr~l~V~~a~ 116 (311)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=115.81 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCCce-EEEcCCCCCCcHHH----HHHHhhcC-CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 37 DDESS-VYVGGLPYSANEDS----VRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 37 ~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
.+..| |||+|||+.+++++ |+++|.+| |.|..|. .|||||+|.+.++|..|++.|+|..|.|++|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34455 99999999999987 55899999 5999981 2899999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 021537 111 RVSEVATRGR 120 (311)
Q Consensus 111 ~V~~a~~~~~ 120 (311)
+|.+|+....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.6e-15 Score=129.55 Aligned_cols=84 Identities=23% Similarity=0.493 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+|||+|||+++++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 45689999999999999999999999999999999998755 8999999999999999999985 899999999999999
Q ss_pred ccCCCC
Q 021537 116 ATRGRK 121 (311)
Q Consensus 116 ~~~~~~ 121 (311)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 886653
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.3e-15 Score=125.87 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34689999999999999999999999999999999998644 88999999999999999999999999999999999987
Q ss_pred c
Q 021537 116 A 116 (311)
Q Consensus 116 ~ 116 (311)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.4e-15 Score=132.66 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCCceEEEcCCC-CCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLP-YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
.+.++|||+||| +.+++++|.++|++||.|..|.|+.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 357899999999 89999999999999999999999875 4789999999999999999999999999999999998
Q ss_pred ccC
Q 021537 116 ATR 118 (311)
Q Consensus 116 ~~~ 118 (311)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.61 E-value=2.2e-15 Score=128.75 Aligned_cols=83 Identities=27% Similarity=0.604 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+.++|||+|||+++|+++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|++||.. ++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345789999999999999999999999999999999998765 7899999999999999999985 89999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87643
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.3e-15 Score=113.79 Aligned_cols=72 Identities=25% Similarity=0.595 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcC----C-------ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
.+..+|||+|||+++++++|.++|.+| | .|..|.+..+ +|||||+|.+.++|++|+ .|||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 346899999999999999999999999 8 9999998764 789999999999999999 8999999
Q ss_pred CCeEEEEEE
Q 021537 106 DGRVVRVSE 114 (311)
Q Consensus 106 ~Gr~l~V~~ 114 (311)
.|+.|.|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999963
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2e-15 Score=120.83 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
..+.++|||+|| ++++++|..+|.+||.|..|.|. .++|||||+|.+.++|++||..|+|..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 356789999996 69999999999999999999986 36889999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87644
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.1e-15 Score=127.39 Aligned_cols=79 Identities=16% Similarity=0.445 Sum_probs=74.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+|++ +++..|+|+.|.|.+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 579999999999999999999999999999999988654 899999999999999999998 899999999999999987
Q ss_pred C
Q 021537 118 R 118 (311)
Q Consensus 118 ~ 118 (311)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=3.9e-15 Score=124.59 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC---CeEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRVS 113 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~V~ 113 (311)
....+|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|.+|++.|||..+. +++|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3568999999999999999999999999999999999887788999999999999999999999998776 4999999
Q ss_pred Ee
Q 021537 114 EV 115 (311)
Q Consensus 114 ~a 115 (311)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 172
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2e-15 Score=134.35 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCC---------cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc-
Q 021537 36 IDDESSVYVGGLPYSA---------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI- 105 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i- 105 (311)
.....+|||+||+..+ ++++|..+|++||.|..|.|+. .+|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999998 7999999999999999999986 478999999999999999999999999
Q ss_pred -----------CCeEEEEEEeccCCC
Q 021537 106 -----------DGRVVRVSEVATRGR 120 (311)
Q Consensus 106 -----------~Gr~l~V~~a~~~~~ 120 (311)
.|+.|.|.||...+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1e-14 Score=113.87 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCC-----CCcHHHHHHHhhcCCceEEEEEeeCCC--CCCceEEEEEeeChHHHHHHHHHcCCCccCCeE
Q 021537 37 DDESSVYVGGLPY-----SANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (311)
Q Consensus 37 ~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~~~~--~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~ 109 (311)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++. ++++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3568999999963 236899999999999999999998764 378999999999999999999999999999999
Q ss_pred EEEEEecc
Q 021537 110 VRVSEVAT 117 (311)
Q Consensus 110 l~V~~a~~ 117 (311)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=8.7e-15 Score=121.77 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCC--eEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G--r~l~V 112 (311)
..+..+|||+|||..+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|||..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 345789999999999999999999999999999999998744 889999999999999999999999999988 99999
Q ss_pred EEe
Q 021537 113 SEV 115 (311)
Q Consensus 113 ~~a 115 (311)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=6.2e-15 Score=127.36 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|++||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999877789999999999999999999865 5699999999998754
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=117.78 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCC----CCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS----TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~----~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
...++|||+|||+++++++|.++|.+||.|. +.++.+.. ++++|||||+|.+.++|++||+.|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568999999999999999999999999999 77777654 3789999999999999999999884 477777776
Q ss_pred EEe
Q 021537 113 SEV 115 (311)
Q Consensus 113 ~~a 115 (311)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=5.7e-15 Score=128.00 Aligned_cols=80 Identities=30% Similarity=0.562 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+++++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+||+.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 579999999999999999999999999999999988755 8899999999999999999999999999999999987654
Q ss_pred C
Q 021537 118 R 118 (311)
Q Consensus 118 ~ 118 (311)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.1e-14 Score=121.84 Aligned_cols=83 Identities=25% Similarity=0.506 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC---CCceEEEEEeeChHHHHHHHHHcCCCccC---CeEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVR 111 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~i~---Gr~l~ 111 (311)
+.++|||+|||+++++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|+.|++.|++..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4679999999999999999999999999999999988776 68999999999999999999999998876 67888
Q ss_pred EEEeccCCC
Q 021537 112 VSEVATRGR 120 (311)
Q Consensus 112 V~~a~~~~~ 120 (311)
|.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888765443
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=1.4e-14 Score=120.02 Aligned_cols=78 Identities=27% Similarity=0.587 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeE--EEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--VRVSE 114 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~--l~V~~ 114 (311)
...+|||+|||..+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|.+|++.|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4689999999999999999999999999999999988754 78999999999999999999999999999965 88887
Q ss_pred e
Q 021537 115 V 115 (311)
Q Consensus 115 a 115 (311)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=7.6e-15 Score=123.35 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
....+|||+|||+.+++++|.++|.+||.|..+ ...+.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 356899999999999999999999999998766 3444789999999999999999999999999999999999998
Q ss_pred cC
Q 021537 117 TR 118 (311)
Q Consensus 117 ~~ 118 (311)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.5e-14 Score=129.51 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~~ 114 (311)
..+.++|||+|||..+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|. |+.|.|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 85
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.3e-14 Score=129.83 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHH----HHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
...+.++|||+|||+++++++|+ ++|.+||.|..|.|+. .++++|||||+|.+.++|+.||..|||..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 34567899999999999999966 8999999999999875 44689999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 021537 111 RVSEVATRG 119 (311)
Q Consensus 111 ~V~~a~~~~ 119 (311)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999996644
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=1.7e-14 Score=131.41 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCC--CCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~--~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
......+|||+|||+. +++++|.++|.+||.|..|.|+.+.. +.++|||||+|.+.++|.+|| .|||..|+|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999877 689999999999999999999 9999999999999
Q ss_pred EEEeccC
Q 021537 112 VSEVATR 118 (311)
Q Consensus 112 V~~a~~~ 118 (311)
|.++.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.5e-14 Score=127.66 Aligned_cols=80 Identities=24% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
..+..+|||+|||+ ++++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|++||+.|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999 99999999999999999999998873 78999999999999999999999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 87643
No 185
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.53 E-value=1.4e-14 Score=120.44 Aligned_cols=78 Identities=31% Similarity=0.715 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEec
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~ 116 (311)
+.++|||+|||+++|+++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||.. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4579999999999999999999999999999999998765 8999999999999999999994 678999999998875
Q ss_pred c
Q 021537 117 T 117 (311)
Q Consensus 117 ~ 117 (311)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=3.8e-14 Score=128.52 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCC-cHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 36 IDDESSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
.....+|||+|||+.+ ++++|.++|..||.|..|.|+.+..+.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999995 999999999999999999999988778999999999999999999999999999999999999
Q ss_pred eccCCC
Q 021537 115 VATRGR 120 (311)
Q Consensus 115 a~~~~~ 120 (311)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987543
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-13 Score=107.94 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCc-----------HHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 37 DDESSVYVGGLPYSAN-----------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
.+..+|+|.||..... +++|.++|.+||.|..|.| .+. .++|||||+|.+.++|++|+..|||..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578999999954432 5799999999999999966 443 3789999999999999999999999999
Q ss_pred CCeEEEEEEeccCCC
Q 021537 106 DGRVVRVSEVATRGR 120 (311)
Q Consensus 106 ~Gr~l~V~~a~~~~~ 120 (311)
+|+.|.|.++.+...
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999977543
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=4.1e-14 Score=121.44 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCC-ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~~ 114 (311)
.+..+|||+|||..+++++|.++|.+|| .|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4579999999999999999999999999 9999999664 4789999999999999999999999999 99999999
Q ss_pred eccC
Q 021537 115 VATR 118 (311)
Q Consensus 115 a~~~ 118 (311)
+.+.
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9764
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=7.9e-14 Score=123.01 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcCC-ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC-CeEEEEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~-Gr~l~V~ 113 (311)
..+..+|||+|||..+++++|.++|.+|| .|..|.|+.. .+|||||+|.+.++|.+||..|+|..|+ |+.|.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 34579999999999999999999999999 9999999654 4789999999999999999999999999 9999999
Q ss_pred EeccC
Q 021537 114 EVATR 118 (311)
Q Consensus 114 ~a~~~ 118 (311)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99764
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.5e-14 Score=112.67 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=64.9
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 44 VGGLPYSANEDSVRKVF------------DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 44 VgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
+.|||+.+++++|.++| ++||.|..|.|+.+..++++|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66788888888777666 999999999999887778999999999999999999999999999999999
Q ss_pred EEEe
Q 021537 112 VSEV 115 (311)
Q Consensus 112 V~~a 115 (311)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=3.1e-14 Score=122.15 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=72.0
Q ss_pred CceEEEcCCCC-CCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEecc
Q 021537 39 ESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 39 ~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~ 117 (311)
.++|||+|||+ .+++++|.++|.+||.|..|.|+.+. +|||||+|.+.++|+.||..|+|..|.|+.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57999999999 99999999999999999999998763 78999999999999999999999999999999999876
Q ss_pred CC
Q 021537 118 RG 119 (311)
Q Consensus 118 ~~ 119 (311)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=1.6e-13 Score=124.42 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-CCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+|||+|||+.+++++|.++|..||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999988755 89999999999999999999999999999999999999
Q ss_pred ccCC
Q 021537 116 ATRG 119 (311)
Q Consensus 116 ~~~~ 119 (311)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=5.8e-14 Score=126.39 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+++|+++|.++|.+||.|..|.|.. .+|||||+|.+.++|..||..|+|..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345568999999999999999999999999999999975 478999999999999999999999999999999999
Q ss_pred ecc
Q 021537 115 VAT 117 (311)
Q Consensus 115 a~~ 117 (311)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 864
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.47 E-value=5.9e-14 Score=122.25 Aligned_cols=78 Identities=12% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCce--EEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe----EE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV--VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR----VV 110 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr----~l 110 (311)
.+..+|||+|||+.+++++|.++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.|. +|
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 457899999999999999999999999999 899988765 44569999999999999999999999999887 57
Q ss_pred EEEEe
Q 021537 111 RVSEV 115 (311)
Q Consensus 111 ~V~~a 115 (311)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.1e-13 Score=107.89 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=69.0
Q ss_pred CCceEEEcCC--CCCC--------cHHHHHHHhhcCCceEEEEEeeCCCC---CCceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 38 DESSVYVGGL--PYSA--------NEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 38 ~~~~lfVgnL--p~~~--------te~~L~~~F~~~G~I~~v~i~~~~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
++..|+|.|+ |.++ .+++|+++|++||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4677888887 3333 34689999999999999999988654 578999999999999999999999999
Q ss_pred cCCeEEEEEEecc
Q 021537 105 IDGRVVRVSEVAT 117 (311)
Q Consensus 105 i~Gr~l~V~~a~~ 117 (311)
|+|+.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999854
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=1.4e-14 Score=121.64 Aligned_cols=84 Identities=13% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
...+.++|||+|||+++++++|.++|..||.|..+.|.....+.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3456799999999999999999999999998766333333334789999999999999999995 999999999999999
Q ss_pred eccCC
Q 021537 115 VATRG 119 (311)
Q Consensus 115 a~~~~ 119 (311)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87643
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=1.2e-13 Score=125.59 Aligned_cols=84 Identities=12% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCC-ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEe
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a 115 (311)
....+|||+|||+.+++++|.++|.+|| .|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999 999999998877778999999999999999999999999999999999999
Q ss_pred ccCCC
Q 021537 116 ATRGR 120 (311)
Q Consensus 116 ~~~~~ 120 (311)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76544
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=2.8e-13 Score=121.87 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC-CCccC---CeEEEE
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN-GRTID---GRVVRV 112 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~-g~~i~---Gr~l~V 112 (311)
.+..+|||+|||+.+|+++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|.+||..|+ +..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35689999999999999999999999999999999998766899999999999999999999995 44444 999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
.++.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998753
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.42 E-value=3.4e-13 Score=112.57 Aligned_cols=75 Identities=23% Similarity=0.531 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcC----C-------ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
+.++|||+|||+++|+++|.++|.+| | .|..+.+.. .+|||||+|.+.++|++|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 7 778887764 4789999999999999999 79999999
Q ss_pred CeEEEEEEeccC
Q 021537 107 GRVVRVSEVATR 118 (311)
Q Consensus 107 Gr~l~V~~a~~~ 118 (311)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987654
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=4.3e-13 Score=106.78 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCceEEEcCCCC--C---CcHHHHHHHhhcCCceEEEEEeeCCCC-----CCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 38 DESSVYVGGLPY--S---ANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 38 ~~~~lfVgnLp~--~---~te~~L~~~F~~~G~I~~v~i~~~~~~-----~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
++.+|+|.|+-. + --+++|+++|++||.|..|.|+.+..+ +++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 2 236889999999999999999987542 567999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 021537 108 RVVRVSEVAT 117 (311)
Q Consensus 108 r~l~V~~a~~ 117 (311)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=4.1e-13 Score=114.65 Aligned_cols=75 Identities=23% Similarity=0.516 Sum_probs=66.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcC----C-------ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
..++|||+|||+++++++|.++|.+| | .|..+.+.. ++|||||+|.+.++|++|| .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 667766643 5789999999999999999 79999999
Q ss_pred CeEEEEEEeccC
Q 021537 107 GRVVRVSEVATR 118 (311)
Q Consensus 107 Gr~l~V~~a~~~ 118 (311)
|+.|.|.++.+.
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999987654
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=100.48 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEEeccCCC
Q 021537 49 YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120 (311)
Q Consensus 49 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~a~~~~~ 120 (311)
..+++++|+++|.+||.|..|.|+. +++|||||+|.+.++|+.||..++ .+.|++|.|.|+.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 5689999999999999999999983 478999999999999999999754 46899999999987654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.1e-12 Score=122.61 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=68.6
Q ss_pred ccCCCCCCceEEEcC--CCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccC---
Q 021537 32 VKMTIDDESSVYVGG--LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--- 106 (311)
Q Consensus 32 ~~~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~--- 106 (311)
......++.+||||| |++.+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++||+.|||..+.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 445567789999999 578999999999999999999987754 5789999999999999999999999873
Q ss_pred Ce--EEEEEEec
Q 021537 107 GR--VVRVSEVA 116 (311)
Q Consensus 107 Gr--~l~V~~a~ 116 (311)
|+ .|.|.++.
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 44 67777773
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1.1e-11 Score=97.99 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCceEEEcCCCC--C--------CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCC
Q 021537 38 DESSVYVGGLPY--S--------ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (311)
Q Consensus 38 ~~~~lfVgnLp~--~--------~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~G 107 (311)
++.+|.|.|+-. + --+++|.++|++||.|..|.|..+. .+|||||+|.+.++|.+|+..|||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 355677777632 1 1235789999999999999986653 58999999999999999999999999999
Q ss_pred eEEEEEEecc
Q 021537 108 RVVRVSEVAT 117 (311)
Q Consensus 108 r~l~V~~a~~ 117 (311)
+.|.|.++..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.5e-11 Score=93.83 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=69.7
Q ss_pred cCCCCCCceEEEcCCCCC-CcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeC-hHHHHHHHHHcC--CCccCCe
Q 021537 33 KMTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAINDMN--GRTIDGR 108 (311)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~-~~~A~~Al~~l~--g~~i~Gr 108 (311)
+....++..|||+||++. ++.++|+++|.+||.|..|.+..+.. .|||.|.+ ..+|..|+..|+ +..|.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 456678999999999999 99999999999999999999987643 79999999 899999999994 7889999
Q ss_pred EEEEEEe
Q 021537 109 VVRVSEV 115 (311)
Q Consensus 109 ~l~V~~a 115 (311)
.+.+++.
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 9998865
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=4.4e-11 Score=89.83 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCC----CCcH----HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCe
Q 021537 37 DDESSVYVGGLPY----SANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (311)
Q Consensus 37 ~~~~~lfVgnLp~----~~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr 108 (311)
++..||+|..++. +... .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||+ |||..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4567888877662 3333 568899999999999999876 49999999999999998 999999999
Q ss_pred EEEEEEeccC
Q 021537 109 VVRVSEVATR 118 (311)
Q Consensus 109 ~l~V~~a~~~ 118 (311)
.|+|.++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998763
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.3e-09 Score=82.25 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=62.8
Q ss_pred CCCCCceEEEcCCCCC-----CcH----HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 35 TIDDESSVYVGGLPYS-----ANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 35 ~~~~~~~lfVgnLp~~-----~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
--++..||+|..++.. +.. .+|.+.|.+||.|..++|+.+ -+||+|.+.++|.+||+ |+|..|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 4466789999888643 222 468899999999999999887 39999999999999999 999999
Q ss_pred CCeEEEEEEec
Q 021537 106 DGRVVRVSEVA 116 (311)
Q Consensus 106 ~Gr~l~V~~a~ 116 (311)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.93 E-value=4e-09 Score=92.22 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=66.3
Q ss_pred CCCCceEEEcCCC-----CCCcHHHHHHHhhcCCceEEEEEeeCCCC-----CCceEEEEEeeChHHHHHHHHHcCCCcc
Q 021537 36 IDDESSVYVGGLP-----YSANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (311)
Q Consensus 36 ~~~~~~lfVgnLp-----~~~te~~L~~~F~~~G~I~~v~i~~~~~~-----~~kg~aFVeF~~~~~A~~Al~~l~g~~i 105 (311)
......+.+.|+- ..-.+++|.+.|.+||.|..|.|+.+..+ +++||+||+|.+.++|.+|+..|||..+
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 3344555555542 23356789999999999999999865433 7899999999999999999999999999
Q ss_pred CCeEEEEEEecc
Q 021537 106 DGRVVRVSEVAT 117 (311)
Q Consensus 106 ~Gr~l~V~~a~~ 117 (311)
+|+.|.|.++..
T Consensus 201 ~gr~i~~~~~~~ 212 (222)
T 3dxb_A 201 AGRKVVAEVYDQ 212 (222)
T ss_dssp SSSBCEEEECCH
T ss_pred CCeEEEEEEcCH
Confidence 999999998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.7e-06 Score=65.53 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhhcC-----CceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEE
Q 021537 36 IDDESSVYVGGLPYSANEDSVRKVFDKY-----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (311)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l 110 (311)
.+...+|-+-|||..++...|..++..| |.|+.|.+..+. +-|+|+|.+...|-+|.-.|+|.+|.|++|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457888899999999999999999999 999999998874 369999999999999998999999999999
Q ss_pred EEEE
Q 021537 111 RVSE 114 (311)
Q Consensus 111 ~V~~ 114 (311)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9863
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=4.3e-05 Score=58.45 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCceEEEcCCCCCCc-----HHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 38 DESSVYVGGLPYSAN-----EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 38 ~~~~lfVgnLp~~~t-----e~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
-+++|+|.||+.++- .+.++.+|..|+++..+.+... -.=..|.|.+.++|.+|-..|++..++|+.|+|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 468999999988662 2567899999999988877654 225789999999999999999999999999999
Q ss_pred EEeccC
Q 021537 113 SEVATR 118 (311)
Q Consensus 113 ~~a~~~ 118 (311)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998754
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00014 Score=57.07 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=58.8
Q ss_pred hhhhhhhccCCCCCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 25 FNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 25 ~~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
+..-+..........+.|.|-++|... ...|...|.+||.|....... ...+-.|.|.+..+|++||. .||..
T Consensus 10 ~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~i 82 (119)
T 1wwh_A 10 YTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRI 82 (119)
T ss_dssp -----------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCE
T ss_pred eeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeE
Confidence 333333334445557889999999885 566788999999999887621 34599999999999999999 59999
Q ss_pred cCC-eEEEEEEe
Q 021537 105 IDG-RVVRVSEV 115 (311)
Q Consensus 105 i~G-r~l~V~~a 115 (311)
|+| -.|-|...
T Consensus 83 i~g~~mIGV~p~ 94 (119)
T 1wwh_A 83 FGESIMIGVKPC 94 (119)
T ss_dssp ETTTEECEEEEC
T ss_pred ecCCEEEEEEEC
Confidence 985 55666553
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.0011 Score=50.42 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=60.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhc-----CCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEE
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDK-----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~-----~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V 112 (311)
...+|.|.|||..+.++.|.-+|+. -|.|..|.... +-|+|+|.+...|+..|+. ..+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4679999999999999999999987 26888887753 4899999999999999983 468999999999
Q ss_pred EEecc
Q 021537 113 SEVAT 117 (311)
Q Consensus 113 ~~a~~ 117 (311)
....+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 65443
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.25 E-value=0.00078 Score=50.74 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=45.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHc
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l 100 (311)
...++| ++|.++...+|.++|+.||.|. |.++.+ ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 456666 9999999999999999999554 666665 28999999999999999865
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00048 Score=52.06 Aligned_cols=55 Identities=18% Similarity=0.432 Sum_probs=46.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
...++| ++|.++...+|.++|+.||. ..|.++.+ ..|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 345666 99999999999999999994 45666665 289999999999999999764
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.94 E-value=0.0043 Score=46.31 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=56.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC---CCceEEEEEeeChHHHHHHHHHcCCCccC
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---~~kg~aFVeF~~~~~A~~Al~~l~g~~i~ 106 (311)
++|.|.+||+.+|++++.+.+..+..+.-...+..+.+ ..-.-|||.|.+.+++......++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47899999999999999999999988777666655433 23467999999999999999999998864
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.49 E-value=0.0032 Score=50.02 Aligned_cols=76 Identities=26% Similarity=0.479 Sum_probs=54.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEE-EEEeeC------------CCC--CCceEEEEEeeChHHHHHHHHHcCCC
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVND------------RST--RGKCYGFVTFGNPRSAVDAINDMNGR 103 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~------------~~~--~~kg~aFVeF~~~~~A~~Al~~l~g~ 103 (311)
...|.|-++|+..+. .+...|++||.|.. +.+... +.. ....+..|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456778899877654 46678999999876 221110 000 024588999999999999999 6999
Q ss_pred ccCCeEEEEEEec
Q 021537 104 TIDGRVVRVSEVA 116 (311)
Q Consensus 104 ~i~Gr~l~V~~a~ 116 (311)
.|+|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999888777653
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0033 Score=60.58 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=43.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHH
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~ 99 (311)
-.+|||. +|..+++.+|.++|++||+|..+.+-.+ ...||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----SSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----CCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 7999999999999999999999988765 346999999999999988653
No 218
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.84 E-value=0.048 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=16.2
Q ss_pred EeeChHHHHHHHHHcCCCccCCeEEE
Q 021537 86 TFGNPRSAVDAINDMNGRTIDGRVVR 111 (311)
Q Consensus 86 eF~~~~~A~~Al~~l~g~~i~Gr~l~ 111 (311)
-|......+.|..+|. .|+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHH--HcCCCEEC
Confidence 4666777778877764 56777664
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.30 E-value=0.014 Score=47.30 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=28.8
Q ss_pred EEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 68 AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 68 ~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
.+.|+.+.. .++|||||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 355666544 589999999999999999999887644
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.48 E-value=0.031 Score=42.01 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=52.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCC-C--CceEEEEEeeChHHHHHHHHHcCCCccCCe-----EE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R--GKCYGFVTFGNPRSAVDAINDMNGRTIDGR-----VV 110 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~--~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr-----~l 110 (311)
.-+|.|..||+.+|++++.+.+..+=.+.....+....+ + .-.-|||.|.+.+++....+.++|..+-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457899999999999998777766544332222222222 1 224689999999999999999999876432 34
Q ss_pred EEEEe
Q 021537 111 RVSEV 115 (311)
Q Consensus 111 ~V~~a 115 (311)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 45655
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.43 E-value=0.012 Score=47.41 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCceEEEEEeeChHHHHHHHHHc-CCCccCCeEEEEEEecc
Q 021537 78 RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVAT 117 (311)
Q Consensus 78 ~~kg~aFVeF~~~~~A~~Al~~l-~g~~i~Gr~l~V~~a~~ 117 (311)
..+|+++|+|.+.++|++|++.| ||..|+| .|.|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 67899999999999999999999 9999999 999987754
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.54 E-value=1.2 Score=43.34 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=45.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
.+..++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 34566666 88899999999999999964 4555443 379999999999999999875
No 223
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=85.87 E-value=1.8 Score=27.29 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
++..-....+.++|.+.|..||.||..|..-|+++
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445556788999999999999999999998875
No 224
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=85.01 E-value=1 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
+-.++.+.||++|+.+|..|+.
T Consensus 8 mTLeEtkeQi~~l~~kl~~Lke 29 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQE 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999988864
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.87 E-value=2.6 Score=29.40 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=42.8
Q ss_pred eEEEcC-CCCCCcHHHHHHHhhcCC-----ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCccCCeEEEEEE
Q 021537 41 SVYVGG-LPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (311)
Q Consensus 41 ~lfVgn-Lp~~~te~~L~~~F~~~G-----~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~i~Gr~l~V~~ 114 (311)
+|||.. --..+...+|..++..-+ .|-.|.|..+ |.||+-.. ..|..++..|++..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 456632 233466677777776544 4556777443 89998764 457889999999999999999887
Q ss_pred ec
Q 021537 115 VA 116 (311)
Q Consensus 115 a~ 116 (311)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 226
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.98 E-value=2.6 Score=28.74 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+.+-++-.+|+.+|+.|+.++..|+.+|..
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455577778888888888888888888764
No 227
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=81.59 E-value=1.2 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+.-.++.||.+|+.||..|+.|+
T Consensus 10 ~Rl~kVE~qv~~md~KLd~l~~~~ 33 (33)
T 2ovc_A 10 GRVVKVEKQVQSIEHKLDLLLGFY 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566788999999999999999875
No 228
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=80.08 E-value=1.8 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+.-.++.||.+|+.||-.|++|+.+|
T Consensus 17 ~Rl~rVE~qV~~md~KLd~l~~~~~~~ 43 (49)
T 3bj4_A 17 ARLNRVEDKVTQLDQRLALITDMLHQL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999998764
No 229
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.82 E-value=2.9 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+.+-++-..|+.+|.+|+.+|..|+.+|.++
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3334666788889999999999999888764
No 230
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=78.19 E-value=3.3 Score=29.84 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.|+.++.+-+.|.++|.++++++..|+.++.+
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666555543
No 231
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.63 E-value=3.7 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+.++-..|+.+|.+|+.+|..|+.+|.++
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333666788899999999999999888764
No 232
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=74.71 E-value=6.1 Score=23.97 Aligned_cols=30 Identities=43% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++.++.-||+.|+-..|+..||+-||-.+.
T Consensus 5 vkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 678999999999999999999998885544
No 233
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=74.01 E-value=3.5 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhc
Q 021537 288 ELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+++|+.|||.++--|..-|..|
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56999999999998887766655
No 234
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.46 E-value=7.9 Score=21.85 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+-|+.-.|++||..||.++..|+.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3446777888888888888887764
No 235
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=72.20 E-value=6 Score=28.56 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
++.-+.+++.|..+|..++.+|++|++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333445566666666666666666654
No 236
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.93 E-value=7.2 Score=25.61 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..|.+.++.++|+.+|..|++.+++|..-|-
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888899999999999999999987654
No 237
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.22 E-value=8.2 Score=26.12 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+.+...-..|+.+|.+|++.+..|+.+|.
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446667788888888888888888775
No 238
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.51 E-value=10 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+...-.+|..+|..|++.+..|+.+|.
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345667788888888888888888774
No 239
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=65.65 E-value=3.5 Score=22.28 Aligned_cols=18 Identities=50% Similarity=0.540 Sum_probs=13.5
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEMV 304 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ 304 (311)
-+|+-||-.||+++|+|+
T Consensus 10 gelkgevralkdevkdlk 27 (27)
T 3v86_A 10 GELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHhccC
Confidence 457778888888888774
No 240
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.73 E-value=13 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 275 QVKELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
-.+..+++-+..+.|..||..||+++++|..+..
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778889999999999988888877643
No 241
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.50 E-value=19 Score=21.40 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
..|.+|.+-.+|+.||.-|++.|.+-
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 66777888888888887777766653
No 242
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=62.80 E-value=6.6 Score=25.77 Aligned_cols=25 Identities=32% Similarity=0.240 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
---++|+.||+.|+.+.|.|++-|.
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999998888887653
No 243
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=62.59 E-value=11 Score=22.06 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELK 301 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~ 301 (311)
..|.+|++-.+|+.||.-|++-|.
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 677788888888888876665543
No 244
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.58 E-value=12 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFEL 300 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
..|.+|++-.+|+.||.-|++-|
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 67778888888888887666544
No 245
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.93 E-value=17 Score=29.93 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=38.2
Q ss_pred CceEEEcCCCC-C--------CcHHHHHHHh--hcCCceEEEEEeeCCCCCCceEEEEEee-ChHHHHHHHH
Q 021537 39 ESSVYVGGLPY-S--------ANEDSVRKVF--DKYGSVVAVKIVNDRSTRGKCYGFVTFG-NPRSAVDAIN 98 (311)
Q Consensus 39 ~~~lfVgnLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~~~~~~~kg~aFVeF~-~~~~A~~Al~ 98 (311)
+.++.|-|+|. . .....|.+.| ..|.++. |..+..+.+ +.|+|.|+|. +-.....|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 34566667775 1 3346888877 9998877 444444444 6789999997 4444556655
No 246
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=59.54 E-value=10 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+.-.|.+|++.+|.+|-.|++-||.+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677889999999999999888864
No 247
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.65 E-value=11 Score=23.32 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+||.++.+-.||.--+++|-+|.+-|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554433
No 248
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.54 E-value=10 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFEL 300 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
..|.+|++-.+|+.||..|++-|
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 67788888888888887776654
No 249
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=58.48 E-value=21 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.|+.++++-+.|.++|.+++++|-.|+.++.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665555555555443
No 250
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=58.02 E-value=9.6 Score=28.43 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLFTMS 311 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (311)
-+..+++.|..+|.+|+..++.|..++..||
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~ 108 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQAMEARS 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3446778888888888888888888888775
No 251
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=57.56 E-value=18 Score=25.62 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHHHHHHhhh
Q 021537 290 KKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~ 308 (311)
..+|+.|+.||.||+.+|.
T Consensus 51 ~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999985
No 252
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.71 E-value=9.5 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 286 REELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.++|..+|.+||..|.+|...|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778888888888888877653
No 253
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=54.80 E-value=8.7 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 283 IQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
-..-..|+.+|.+|++.+..|+.+|.
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777776666654
No 254
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=52.47 E-value=20 Score=26.77 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHhhhhHHHHHHHHHHhhh
Q 021537 290 KKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~ 308 (311)
..+|+.|++||.||+.+|.
T Consensus 81 ~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 81 RAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999985
No 255
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=52.33 E-value=13 Score=28.52 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.++.++.|.+.+.|+.+|.+|+++|..+.
T Consensus 88 ~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 88 KKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44677788888888888888888877653
No 256
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=52.22 E-value=12 Score=25.19 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
--++|+.||..|++..|.|+.||-.
T Consensus 8 tVYalkDev~eLk~e~k~~k~~le~ 32 (61)
T 3l4f_A 8 TVYALKDEVQELRQDNKKMKKSLEE 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999988853
No 257
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=52.00 E-value=19 Score=25.62 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhHHHH
Q 021537 284 QRREELKKEVCPLKFE 299 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~ 299 (311)
+..+.++.||..||+.
T Consensus 41 ~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 41 KEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555566655
No 258
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=51.65 E-value=22 Score=29.78 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
.|+.++.+-+.|.++|.+++++|..|+.+
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeE 137 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKE 137 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444444333
No 259
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=51.17 E-value=21 Score=25.38 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 273 SDQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+...-|..+|.-+..|+.++..|++++.+|...++.
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456688999998999999999999998888887764
No 260
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=50.56 E-value=26 Score=22.02 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKE 302 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (311)
.+.++.-| ++++..||+.||++|=+
T Consensus 9 le~~KqEI--L~E~RkElqK~K~EIIe 33 (45)
T 1use_A 9 LQRVKQEL--LEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44555555 67888999999988755
No 261
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.28 E-value=19 Score=30.19 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 275 QVKELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
-.+..+++-...+.|..||..||+++++|+.+..
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778889999999999998888877653
No 262
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=49.83 E-value=19 Score=33.82 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 273 SDQVKELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+++...+++.|+++|.+-+||+.+...+++|++.|+.+
T Consensus 30 ~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 30 NKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666788999999999999999999999999988754
No 263
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=49.22 E-value=33 Score=20.16 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFE 299 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~ 299 (311)
.+|..|.+-.+|+.||.-+++-
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5666677777777766555443
No 264
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.64 E-value=14 Score=24.45 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred hHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 274 DQVK-ELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 274 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
+++- -++..+...+.|..|+..|+++|+.|..
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444 6777788888888888888888888764
No 265
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=48.38 E-value=27 Score=22.46 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 021537 285 RREELKKEVCPLKFELKEM 303 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (311)
.+-.|+.|.+-||+-||.|
T Consensus 32 ~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 32 HLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHH
Confidence 3334444444444444433
No 266
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.46 E-value=13 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=9.5
Q ss_pred hhhhHHHHHHHHHHhhhhc
Q 021537 292 EVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (311)
.|.+||++|.+|...|.++
T Consensus 50 ~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 50 RNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 267
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.36 E-value=43 Score=19.89 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKE 302 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (311)
..|.+|.+-.+|+.||.-|+..|.+
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 5666777777777777666665543
No 268
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.19 E-value=16 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHh
Q 021537 285 RREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
.-|+|+.|+..|+.++.+|+.-
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 269
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=46.12 E-value=9.4 Score=26.63 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=13.4
Q ss_pred HHhhhhHHHHHHHHHHhhhhc
Q 021537 290 KKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..+|..|+++|++|..+|..|
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356777778888887777765
No 270
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.83 E-value=26 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFEL 300 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
..|.+|++-.+|..||.-|++-|
T Consensus 9 KvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 9 KLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHh
Confidence 66677777777777776655544
No 271
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.45 E-value=35 Score=24.43 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+..+++-...+.+..||..||+++++|..+-
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777888888888877776553
No 272
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.26 E-value=19 Score=21.20 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKF 298 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~ 298 (311)
..|.+|++-.+|+.||.-|++
T Consensus 9 KVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 9 KGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 566677666666666655544
No 273
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=44.88 E-value=43 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..+.+.++.++|+.+...|+.+|..|..-++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888888888888876544
No 274
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=44.51 E-value=45 Score=23.02 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 021537 273 SDQVKELDRSIQRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
+.|.+++++.=..++.+..+...-++.|++|+++
T Consensus 36 ~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 36 GHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4677788888889999999999999999999875
No 275
>3a1g_B Polymerase basic protein 2; influenza virus, RNA polymerase, nucleotide-binding, nucleotidyltransferase, nucleus, RNA replication; 1.70A {Influenza a virus} PDB: 2ztt_B
Probab=43.91 E-value=11 Score=22.92 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhh
Q 021537 298 FELKEMVHMLFT 309 (311)
Q Consensus 298 ~~~~~~~~~~~~ 309 (311)
++||||+++|++
T Consensus 5 ~~ikelk~L~~d 16 (40)
T 3a1g_B 5 ERIKELRNLMSQ 16 (40)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHH
Confidence 688999998875
No 276
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.42 E-value=49 Score=19.24 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 021537 278 ELDRSIQRREELKKEVCPLK 297 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~ 297 (311)
..|.+|.+-.+|..||.-++
T Consensus 8 KVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 45555555555555554443
No 277
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.04 E-value=25 Score=19.06 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=10.9
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEMV 304 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ 304 (311)
+.|.+.|..||++|..|+
T Consensus 10 daleqkiaalkqkiaslk 27 (28)
T 3ra3_A 10 DALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455666666666665554
No 278
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=40.99 E-value=42 Score=19.68 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFEL 300 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
..|.+|..-.+|+.||.-|++-|
T Consensus 9 kVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 9 AVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 56667777777777776655544
No 279
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.63 E-value=36 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
.....+.+|+|+.|...|++.+..|
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3445678899999999999887654
No 280
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=39.94 E-value=25 Score=31.83 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
++.-+...++.|+.+|.+||.+|.+|...+++
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~ 60 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKELCSA 60 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444456788888888888888888777654
No 281
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.47 E-value=30 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.8
Q ss_pred HHhhhhHHHHHHHHHHhhh
Q 021537 290 KKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~ 308 (311)
..+|+.|+.||.+|+.+|.
T Consensus 51 ~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 51 RAAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999985
No 282
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.32 E-value=74 Score=20.42 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+++++-..||+.||-+...|+.+|
T Consensus 24 rEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 24 QELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHH
Confidence 556666777777777655554444
No 283
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=37.21 E-value=78 Score=20.72 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+..+...|+.+-.++|+++--|..||++
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777788889999999876
No 284
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.11 E-value=37 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
++..+|...|.-++++.+||...|.
T Consensus 53 ~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 53 QEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667788889999999999988764
No 285
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=36.76 E-value=58 Score=18.40 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q 021537 283 IQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
-|+.-.+++|+..||.+|..++
T Consensus 8 kqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 8 KQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888876654
No 286
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.73 E-value=26 Score=20.50 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKF 298 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~ 298 (311)
..|.+|.+-.+|+.||.-|++
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455666666666666654443
No 287
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.73 E-value=68 Score=23.09 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=26.2
Q ss_pred eEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCC
Q 021537 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (311)
Q Consensus 66 I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~ 103 (311)
|..+.++.. .+||.||++...++...+|..+.|.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 566666543 7899999999998888888876654
No 288
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=36.03 E-value=62 Score=18.51 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=17.2
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhc
Q 021537 288 ELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
.+..||+.+|+++..++-++.++
T Consensus 13 aieeeiqaikeeiaaikyliaqi 35 (36)
T 1bb1_B 13 AIEEEIQAIKEEIAAIKYLIAQI 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34778888888888887776554
No 289
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.96 E-value=5.9 Score=31.73 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEee
Q 021537 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (311)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~ 88 (311)
+++.++|...|.|+-+. . .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C----CCCeeEEeeC
Confidence 45566777777765433 2 5789999975
No 290
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.72 E-value=56 Score=26.16 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh
Q 021537 285 RREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
++..|..+|.++++.|++-.+.+
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~ 98 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNT 98 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333333433
No 291
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=35.69 E-value=40 Score=19.33 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHhhhhHHHHHHHHHHhhhh
Q 021537 288 ELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.++.||..+|+++..++.++..
T Consensus 13 aikeeiaaikdkiaaikeyiaa 34 (36)
T 1bb1_A 13 AIKEEIAAIKDKIAAIKEYIAA 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999888877643
No 292
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.62 E-value=67 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+.+..+.+.|..+-..|+.+|..|+.+|
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555554
No 293
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.56 E-value=30 Score=22.80 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFEL 300 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~ 300 (311)
...+.++.+..+|+.+|..++++|
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 366777778888888888887765
No 294
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.27 E-value=57 Score=24.20 Aligned_cols=33 Identities=27% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
+++..+..+.++|..|...|++++.+|.-+|-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777788888888888888888888877643
No 295
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=34.62 E-value=82 Score=22.30 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.|+.+..+-..|-++|.++++.|..|+
T Consensus 28 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 28 ALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666555544
No 296
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=33.15 E-value=68 Score=25.16 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
...+..|--+++|++|++|-...||+|++
T Consensus 96 ADIdNNinnIYELAQQQDQHSSDIKTLkK 124 (157)
T 2qih_A 96 ADIANNIKNIYELAQQQDQHSSDIKTLAK 124 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHHHHh
Confidence 34566677899999999999999999986
No 297
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=32.90 E-value=36 Score=24.43 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
-+..+++.|..+|.+|+..++.|..++.
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566666666666666666666554
No 298
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.88 E-value=34 Score=25.66 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
+.+..++.+|+.||..++++|+.|..
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445567888999999999998864
No 299
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.82 E-value=40 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=16.7
Q ss_pred HHhhhhHHHHHHHHHHhhh
Q 021537 290 KKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~ 308 (311)
..+|+.|+.||.||+.+|.
T Consensus 68 ~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 68 EGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999985
No 300
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=32.67 E-value=58 Score=24.93 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..|....+.+-+..||..||.-|--|..||+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~ 54 (125)
T 4g2k_A 22 KIEEILSKIYHIENEIARIKKLIGNLVSRLRRL 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445555778889999999999999999999864
No 301
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.38 E-value=50 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
+++++|+.||..|.=.+.++.+-|.+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555555555444555554444
No 302
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.90 E-value=78 Score=23.32 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
+......|.++..+..+|+.+|.+|+--||.
T Consensus 35 l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 35 IAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477888889999999999999998884
No 303
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.81 E-value=92 Score=20.72 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+.+.++-+.|..+-..|+.+|..|...+++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777777777776665543
No 304
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.78 E-value=56 Score=17.52 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=12.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhh
Q 021537 287 EELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~ 307 (311)
++|-+|+..+.|+|..|.+-|
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666666665544
No 305
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=31.77 E-value=61 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
-+..+++.|..+|.+|+..++.|.+++..
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 107 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTIDRTLLS 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777777777777666654
No 306
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=31.09 E-value=69 Score=23.89 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.9
Q ss_pred ceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 65 SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 65 ~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
.|.++..+.. .+||-|||=....++..|+..+.+..
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4666665443 68999999999999999998776443
No 307
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.84 E-value=64 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+++.++..|.+|+++|.+|...++
T Consensus 33 ~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 33 EMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556667777777777666554
No 308
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.82 E-value=68 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 277 KELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
+++++-|+++|.+..+...|+-|+--|
T Consensus 57 ~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 57 ARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444455555555555555444433
No 309
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.38 E-value=86 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
++++.+.++|...+..|+.|+..|.+
T Consensus 54 ~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 54 KKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888777654
No 310
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.81 E-value=1.1e+02 Score=21.21 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh
Q 021537 285 RREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
..++|.++|++.++.|++|..-|
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888887665
No 311
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.48 E-value=81 Score=22.08 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHhhhh
Q 021537 274 DQVKELDRSIQRRE-------ELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 274 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
....-+..+|.-+. .|+.|+..|+.+..+|..-|..
T Consensus 37 sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 37 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666664444 4445555555555555554444
No 312
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=29.10 E-value=72 Score=18.81 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
...+++...|.|+.--.||+.+|..|
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888999999889999998875
No 313
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.00 E-value=1.2e+02 Score=21.97 Aligned_cols=26 Identities=31% Similarity=0.175 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+++.|+.|+.++...+..|+.-++.
T Consensus 62 ~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 62 QQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554443
No 314
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.47 E-value=59 Score=21.10 Aligned_cols=22 Identities=0% Similarity=-0.100 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
-...+|..+|++|+..+..|..
T Consensus 11 s~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666655544
No 315
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.37 E-value=38 Score=33.66 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=41.2
Q ss_pred CCCCCCcHHHHHHHhh----cCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 46 GLPYSANEDSVRKVFD----KYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 46 nLp~~~te~~L~~~F~----~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
..+.+.+--+|..+|. .+|-|+.+.|...+......+++|.|.+.++|..|+..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 3455555557888883 5899999888765554456688999999999999887653
No 316
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=28.33 E-value=82 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHH-HHH-H---hhhhHHHHHHHHHHhhhh
Q 021537 274 DQVKELDRSIQRRE-ELK-K---EVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~ 309 (311)
...+.++.+|.... .|. . .+..|+.++++|..+++.
T Consensus 32 ~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~ 72 (113)
T 1ud0_A 32 EDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNP 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHH
Confidence 44456666664443 232 1 566788888888776653
No 317
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=28.19 E-value=73 Score=28.80 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+.-+....+.|..+|.+||.+|.++...+++
T Consensus 31 ~I~~Lq~~le~l~~KIq~Le~~v~~~~~~~~~ 62 (328)
T 1fzc_B 31 NLRVLRSILENLRSKIQKLESDVSAQMEYCRT 62 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34445566788999999999999988877654
No 318
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.98 E-value=93 Score=20.05 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+++.....+.+.||..|++.|..|.
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556666777777777776653
No 319
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.91 E-value=39 Score=23.57 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=4.0
Q ss_pred HHhhhhHHHHH
Q 021537 290 KKEVCPLKFEL 300 (311)
Q Consensus 290 ~~~~~~~~~~~ 300 (311)
|.+|..|++++
T Consensus 21 Ke~I~EL~e~~ 31 (78)
T 1dip_A 21 KEQIRELVEKN 31 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 320
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.80 E-value=86 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHhhh
Q 021537 292 EVCPLKFELKEMVHMLF 308 (311)
Q Consensus 292 ~~~~~~~~~~~~~~~~~ 308 (311)
+|..++.+|++|...|+
T Consensus 68 ~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 68 RIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555566666655554
No 321
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.61 E-value=69 Score=22.89 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhh
Q 021537 285 RREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
..+.|..+|..|+.++.+|..-|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444
No 322
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.60 E-value=52 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=17.7
Q ss_pred HHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 275 QVKELDRSI-------QRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 275 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
...-+.++| +....+..|+.+++.+..+|..-|.
T Consensus 38 k~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666 3333444455555555555555444
No 323
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.26 E-value=1.2e+02 Score=19.82 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
..+.+..+-+.|..+...|+.+|..|..-+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777777777777765443
No 324
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.23 E-value=95 Score=22.06 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+-|+.++..|++++.+|..++..
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~ 64 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRS 64 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777776666554
No 325
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.94 E-value=83 Score=22.06 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
+++|.+.|+|-.|...|+.+|.-+....
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777665443
No 326
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.94 E-value=48 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+.|..++..|++++++|..++..
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~ 100 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQT 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777776654
No 327
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.71 E-value=80 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=12.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 285 RREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+++..++||..+++.|..+++-|.
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566655555443
No 328
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.68 E-value=1.3e+02 Score=19.17 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
.+.+.++..+|+..-+.+|+++..|..+|.+
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3445577778888888888888888888865
No 329
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.52 E-value=39 Score=23.00 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=11.7
Q ss_pred HHhhhhHHHHHHHHHHhhhhc
Q 021537 290 KKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..+|.+|+..|.+|..|++.|
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dl 29 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDM 29 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555443
No 330
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=26.39 E-value=1.9e+02 Score=21.02 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=44.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHHcC
Q 021537 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (311)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~l~ 101 (311)
...+-|-|-|+|..+-..++--.....|---.|..+ -|.|.|.|.+.++..-|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHH
Confidence 346778889999998887776666677765566553 3589999999999999998764
No 331
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.34 E-value=82 Score=22.56 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q 021537 274 DQVKELDRSI 283 (311)
Q Consensus 274 ~~~~~~~~~~ 283 (311)
....-|.++|
T Consensus 42 sK~~iL~~A~ 51 (88)
T 1nkp_A 42 PKVVILKKAT 51 (88)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3344555665
No 332
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=26.33 E-value=98 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHH-HHHH----hhhhHHHHHHHHHHhhhh
Q 021537 274 DQVKELDRSIQRRE-ELKK----EVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 274 ~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~ 309 (311)
...+.++.+|.... .|.. .+..|+.++++|..+++.
T Consensus 46 eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~ 86 (120)
T 2p32_A 46 EDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANP 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHH
Confidence 33445566664443 2321 456677777777766543
No 333
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.24 E-value=1.2e+02 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
++-+.|..|-.+|+.+|.+|+.-|++
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666665554
No 334
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=25.98 E-value=39 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=11.6
Q ss_pred HHhhhhHHHHHHHHHHhhhhc
Q 021537 290 KKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..+|.+|+..|.||-.|++.|
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dl 29 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDM 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665555443
No 335
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.91 E-value=1.3e+02 Score=19.27 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..++....|.|..++..-|++.+.+...|-+
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334445577777777777777777766643
No 336
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=25.73 E-value=1.3e+02 Score=20.63 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
.+..+-+-+|+|++--.-|+++.++|..|
T Consensus 13 ll~EN~~LreAlkqsNq~mkeR~eeL~~w 41 (70)
T 3brv_B 13 CLEENQELRDAIRQSNQILRERCEELLHF 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567777888888888888888777
No 337
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.70 E-value=50 Score=30.15 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc
Q 021537 41 SVYVGGLPYSANEDSVRKVFDK 62 (311)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~ 62 (311)
.++|+|||++++..-|..+|..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888764
No 338
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=25.62 E-value=66 Score=21.60 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
.+...+|+|-+|+.+|..++|+|.--..
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~ 31 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQR 31 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667789999999999999999975543
No 339
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=25.59 E-value=45 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ 304 (311)
.++.-++.+|.+|-.+|..|+
T Consensus 10 aRLnRvE~k~t~MD~kL~~it 30 (31)
T 3hfe_A 10 ARLNRVEDKVTQLDQRLALIT 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345566778888888887664
No 340
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.59 E-value=92 Score=21.67 Aligned_cols=32 Identities=6% Similarity=0.238 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 021537 274 DQVKELDRSIQRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
....-|..+|.-+..|..++..|++++.+|..
T Consensus 47 sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 47 SRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44668889999999999999999998888864
No 341
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.37 E-value=1.4e+02 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
....+..+.+.|+.|+.+|+.+|.+|
T Consensus 55 ~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 55 SDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556678889999999999988765
No 342
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=25.28 E-value=71 Score=26.78 Aligned_cols=26 Identities=4% Similarity=-0.174 Sum_probs=23.0
Q ss_pred CceEEEEEeeChHHHHHHHHHcCCCc
Q 021537 79 GKCYGFVTFGNPRSAVDAINDMNGRT 104 (311)
Q Consensus 79 ~kg~aFVeF~~~~~A~~Al~~l~g~~ 104 (311)
.+||-|||=....++..||+.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 68999999999999999999887653
No 343
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.28 E-value=88 Score=23.44 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhHHHHHHHH
Q 021537 285 RREELKKEVCPLKFELKEM 303 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (311)
+..+|..||..|+..+..|
T Consensus 19 ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 344
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.20 E-value=34 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=25.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEe
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV 72 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~ 72 (311)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865555555443
No 345
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.02 E-value=1.1e+02 Score=22.31 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 281 RSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
+...+.++|+-||..|+.+|+++-
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334568999999999999999864
No 346
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.95 E-value=58 Score=28.41 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=25.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCceEEEEE
Q 021537 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI 71 (311)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i 71 (311)
..-+.|+|||+.++...|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 356789999999999999999987 56554443
No 347
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=24.78 E-value=1e+02 Score=17.31 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=9.3
Q ss_pred HHHHHHHH----HHHHHHhhhhHH
Q 021537 278 ELDRSIQR----REELKKEVCPLK 297 (311)
Q Consensus 278 ~~~~~~~~----~~~~~~~~~~~~ 297 (311)
++|+.+.+ -.+|.+||.||+
T Consensus 5 qlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555433 334444555444
No 348
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.76 E-value=1.5e+02 Score=19.25 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=40.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCceEEEEEeeCCCCCCceEEEEEeeChHHHHHHHHH
Q 021537 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (311)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kg~aFVeF~~~~~A~~Al~~ 99 (311)
.++.|.++.-..-...|+..+.. ..|..+.+.. ..+-+.|+|.+.+....||..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHH
Confidence 46788888776677888999988 8888887754 345778888855666677764
No 349
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.68 E-value=1.1e+02 Score=21.72 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMV 304 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (311)
++..+-.+-.+|..||..+++++++|.
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677788888888888888853
No 350
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.47 E-value=42 Score=23.49 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=7.0
Q ss_pred HHHHhhhhHHHHHHHH
Q 021537 288 ELKKEVCPLKFELKEM 303 (311)
Q Consensus 288 ~~~~~~~~~~~~~~~~ 303 (311)
+|...|.+||..|++|
T Consensus 49 ~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 49 EVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 351
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=24.46 E-value=47 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
+....++-..+|.+|+..+.||..|++.|
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dl 40 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDM 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667778888888877777655
No 352
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=24.40 E-value=99 Score=21.59 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 281 RSIQRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.+|+..=+++.+|..-+.+++||...|
T Consensus 18 ELi~l~lk~~~~l~~k~~~v~eLEdYI 44 (75)
T 3tso_C 18 EVLQELVKHKELLRRKDTHIRELEDYI 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666666666554
No 353
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=24.34 E-value=1.7e+02 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHH
Q 021537 273 SDQVKELDRSIQRREELKKEVCPLK 297 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (311)
.+.+...|.+||+.-+|+.-|..|+
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elE 39 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELE 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4566788899988887777776665
No 354
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.33 E-value=49 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=8.8
Q ss_pred HHHHHhhhhHHHHHHHH
Q 021537 287 EELKKEVCPLKFELKEM 303 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~ 303 (311)
+.|+..|.+||..|.+|
T Consensus 51 ~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 51 FFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455555555555554
No 355
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=23.03 E-value=50 Score=22.34 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=11.5
Q ss_pred HHhhhhHHHHHHHHHHhhhhc
Q 021537 290 KKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~ 310 (311)
..+|.+|+..|.+|-.|++.|
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dl 31 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDM 31 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555443
No 356
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.87 E-value=1.1e+02 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+..++++|..+|.+|+..++.|...|.
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666655554
No 357
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.38 E-value=1.4e+02 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 284 QRREELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
...+.|..++..++.++++|+.-|+.|
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777888888887777654
No 358
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.00 E-value=1.3e+02 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC
Q 021537 276 VKELDRSIQRREELKKEVCPLKFELKEMVHMLFTMS 311 (311)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (311)
.+..+.+-.+..+...-|.-+.+.|++|+++|++|.
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 359
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.61 E-value=1.8e+02 Score=19.09 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEMVHMLFT 309 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (311)
..+.+..+.+.|..+...|+.+|..|..-+.+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666667777777777766655443
No 360
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.59 E-value=1.3e+02 Score=19.51 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHh
Q 021537 285 RREELKKEVCPLKFELKEMVHM 306 (311)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~ 306 (311)
+...|..|...|...|..|+.+
T Consensus 30 ~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555443
No 361
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.21 E-value=77 Score=27.53 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 021537 284 QRREELKKEVCPLKFELKEMVH 305 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~ 305 (311)
..+.+++.||.+|+++|+.|+.
T Consensus 75 ~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 75 ETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4566667777777777776653
No 362
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.10 E-value=73 Score=20.69 Aligned_cols=11 Identities=45% Similarity=0.477 Sum_probs=4.6
Q ss_pred HhhhhHHHHHH
Q 021537 291 KEVCPLKFELK 301 (311)
Q Consensus 291 ~~~~~~~~~~~ 301 (311)
.||..|+++||
T Consensus 55 eevkkleeeik 65 (67)
T 1lq7_A 55 EEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 363
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.96 E-value=1.5e+02 Score=22.07 Aligned_cols=17 Identities=12% Similarity=0.086 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHhhh
Q 021537 292 EVCPLKFELKEMVHMLF 308 (311)
Q Consensus 292 ~~~~~~~~~~~~~~~~~ 308 (311)
+...|+..|.+|..||.
T Consensus 47 ek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 47 DKKKIEDKCDEILKWLD 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567888888888885
No 364
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=20.91 E-value=42 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 280 DRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+.+|+..-+++.+|.+-+.+|+||...+-
T Consensus 49 dELI~lllk~e~~l~~kd~~IrELEDYID 77 (107)
T 2gzd_C 49 EEVLQELVKHKELLRRKDTHIRELEDYID 77 (107)
T ss_dssp --------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777888888888888876654
No 365
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.73 E-value=1.2e+02 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhh
Q 021537 284 QRREELKKEVCPLKFELKEMVHML 307 (311)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (311)
.++++|..+|.+|+..++.|..+|
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444
No 366
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.40 E-value=1.5e+02 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 021537 278 ELDRSIQRREELKKEVCPLKFELKEM 303 (311)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (311)
..+.+..+.++|+.++.+|+.+|..|
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455578889999999999888765
No 367
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=20.21 E-value=82 Score=22.16 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhc
Q 021537 287 EELKKEVCPLKFELKEMVHMLFTM 310 (311)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ 310 (311)
++=..+|..|+..|.||-.|++.|
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dl 40 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDM 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456677777777777666554
No 368
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.14 E-value=1.3e+02 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.111 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 279 LDRSIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
.+.+..+++.|..+|..|+.-++.|..+|.
T Consensus 82 ~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 82 LRQMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666666665554
No 369
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.08 E-value=1.5e+02 Score=22.72 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 021537 282 SIQRREELKKEVCPLKFELKEMVHMLF 308 (311)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
+..++++|..+|.+|+..++.|..++.
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 84 TLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666654
Done!