Query 021538
Match_columns 311
No_of_seqs 194 out of 985
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3346 Uncharacterized conser 100.0 1.7E-40 3.7E-45 307.8 19.9 191 73-305 18-222 (252)
2 KOG1563 Mitochondrial protein 100.0 2E-40 4.2E-45 306.4 18.9 179 70-286 58-239 (288)
3 PF02104 SURF1: SURF1 family; 100.0 5.8E-37 1.3E-41 276.5 19.4 171 76-285 2-179 (212)
4 cd06662 SURF1 SURF1 superfamil 100.0 3.5E-33 7.6E-38 248.8 17.1 152 82-276 1-155 (202)
5 COG4578 GutM Glucitol operon a 81.2 1.1 2.5E-05 38.4 2.2 30 69-98 9-38 (128)
6 PF12273 RCR: Chitin synthesis 51.8 7.7 0.00017 32.7 1.2 25 69-93 1-25 (130)
7 COG3012 Uncharacterized protei 48.2 24 0.00053 31.1 3.8 36 231-267 89-128 (151)
8 PF11293 DUF3094: Protein of u 43.0 31 0.00066 25.6 3.0 28 64-91 25-52 (55)
9 COG3768 Predicted membrane pro 37.4 50 0.0011 32.7 4.4 57 30-88 20-82 (350)
10 PF10883 DUF2681: Protein of u 35.4 77 0.0017 25.5 4.5 21 76-96 11-31 (87)
11 PRK00183 hypothetical protein; 31.0 55 0.0012 29.0 3.3 34 232-266 91-128 (157)
12 PF04375 HemX: HemX; InterPro 30.9 1.5E+02 0.0033 29.4 6.8 10 81-90 41-50 (372)
13 PRK06975 bifunctional uroporph 25.6 2E+02 0.0043 30.9 7.0 7 14-20 238-244 (656)
14 PF06724 DUF1206: Domain of Un 25.1 81 0.0018 23.7 2.9 29 65-96 43-71 (73)
15 PTZ00370 STEVOR; Provisional 24.0 57 0.0012 31.8 2.3 38 61-98 250-289 (296)
16 PRK01752 hypothetical protein; 23.3 94 0.002 27.5 3.4 34 232-266 92-129 (156)
17 PF14981 FAM165: FAM165 family 23.1 2.5E+02 0.0054 20.3 4.8 27 78-104 20-46 (51)
18 PRK01842 hypothetical protein; 23.1 94 0.002 27.4 3.3 34 232-265 107-144 (149)
19 PRK04233 hypothetical protein; 21.2 1E+02 0.0022 26.4 3.1 33 232-265 90-127 (129)
20 PRK10234 DNA-binding transcrip 20.8 1.5E+02 0.0032 25.2 3.9 19 78-96 12-30 (118)
21 PF06212 GRIM-19: GRIM-19 prot 20.3 1.2E+02 0.0026 26.0 3.4 43 72-114 31-75 (130)
22 PF06923 GutM: Glucitol operon 20.3 1.6E+02 0.0035 24.3 4.0 24 74-97 7-30 (109)
23 PRK01617 hypothetical protein; 20.1 1E+02 0.0022 27.2 2.9 34 232-266 90-129 (154)
No 1
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=307.81 Aligned_cols=191 Identities=25% Similarity=0.356 Sum_probs=159.5
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEcccccc
Q 021538 73 WLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRS 152 (311)
Q Consensus 73 lll~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~ 152 (311)
+++++.++++++||+||++|++||.++|++++++.++||+++++...+....++.+||||+++|+|+|++++++++|..+
T Consensus 18 ~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~ltG~fl~~~e~l~~~r~~~ 97 (252)
T COG3346 18 LLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVTLTGTFLHDKEVLLYARVTE 97 (252)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEEEEEEEcCCceEEEeeeeec
Confidence 35555667889999999999999999999999999999999999876433334489999999999999999999999763
Q ss_pred CCCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCCCc
Q 021538 153 ISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIV 232 (311)
Q Consensus 153 ~~G~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~ 232 (311)
| ++||||+|||.+++| +.|||||||||.+.++..++.+ ..+
T Consensus 98 --g--~~Gy~VlTPf~~~dG------~~VLVnRG~vp~e~~~~~~r~~-----------------------------~~~ 138 (252)
T COG3346 98 --G--GPGYEVLTPFALDDG------RTVLVNRGFVPRERKEASPRAE-----------------------------GQP 138 (252)
T ss_pred --C--CccEEEecccEecCC------cEEEEeCCcccCcccCCCCCCC-----------------------------CCC
Confidence 5 899999999999886 7999999999999887765432 245
Q ss_pred cceEEEEEEEeccccccCCccccCC---CCeeEeeCHHHHHHhhCCC----ceEEeeccccc-------hhhhhhhcccc
Q 021538 233 ELLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTL----SILRTPMKMSI-------LATLTLFQKMS 298 (311)
Q Consensus 233 ~g~vtVtGvlr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~----p~~~~a~~~~~-------~~~~~~~~~~~ 298 (311)
.|+|+|+|++|++| +.+.|.|.| .|+||++|+++||+..|.. |++++++...+ ..+...|.+ +
T Consensus 139 ~g~v~I~Gl~r~~e--~~~~~l~~nd~~~~~~y~~d~~~~A~~~gl~~~~~~~~v~ae~~~~pgglp~~~~~~~~~~n-~ 215 (252)
T COG3346 139 AGPVTITGLLRPPE--PGGSLLPDNDPGKNLWYSIDLAAFAQATGLPDLLAPYFVDAEGQDNPGGLPVGGVTVIDFPN-N 215 (252)
T ss_pred CCcEEEEEEEecCC--CccccCcccCcccCeeeeccHHHHHhhcCCCcccceeEEecCCCCCCCCCCCCCCceeccCC-C
Confidence 69999999999999 888899999 9999999999999999975 88999987631 223334444 6
Q ss_pred eeeeeec
Q 021538 299 VLCFGVQ 305 (311)
Q Consensus 299 ~~~~~~~ 305 (311)
-||.++|
T Consensus 216 HL~Yait 222 (252)
T COG3346 216 HLSYALT 222 (252)
T ss_pred cceehhH
Confidence 6666654
No 2
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=100.00 E-value=2e-40 Score=306.43 Aligned_cols=179 Identities=36% Similarity=0.590 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccc
Q 021538 70 WSKWLLFLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPR 149 (311)
Q Consensus 70 w~~lll~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR 149 (311)
.+.++++++.++.|+||+||+.|++||.++|+..++++.++|++|++... +.++.|||||.++|.|+|+++++|+||
T Consensus 58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~pi~LP~~~~---~l~~lEyrrV~~rG~F~H~kEm~vgPR 134 (288)
T KOG1563|consen 58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEPIPLPKDLD---DLEGLEYRRVKLRGIFLHDKEMYVGPR 134 (288)
T ss_pred hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCCccCCCChh---HhcccceEEEEEEEEEcccceEEeccc
Confidence 34446667778899999999999999999999999999999999998762 578999999999999999999999999
Q ss_pred cccCCCCCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCC
Q 021538 150 SRSISGVTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKP 229 (311)
Q Consensus 150 ~~~~~G~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p 229 (311)
.+......+.||+|+|||.++|. +..|||||||||...-++..+. ..
T Consensus 135 ~r~~~~g~~~Gy~vvTPF~~~d~-----g~~ILVNRGWvp~~~v~petR~----------------------------~~ 181 (288)
T KOG1563|consen 135 TRSGPKGSEIGYYVVTPFILDDN-----GSIILVNRGWVPRKKVEPETRY----------------------------PS 181 (288)
T ss_pred cccCCCCcccceEEeeeeEECCC-----CCEEEEecCccchhhcCccccc----------------------------cc
Confidence 98744333568999999999875 3699999999998765544331 11
Q ss_pred CCccceEEEEEEEeccccccCCccccCC---CCeeEeeCHHHHHHhhCCCceEEeecccc
Q 021538 230 NIVELLVLFVGVRSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTLSILRTPMKMS 286 (311)
Q Consensus 230 ~~~~g~vtVtGvlr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~p~~~~a~~~~ 286 (311)
..++|+|+|+|+||++| .++.|++.| +|.|||+|+++||++.|++||+|||.+.+
T Consensus 182 ~~~~~~v~l~gvVRk~e--~r~~f~~~n~pe~~~w~y~Dl~~mA~~~G~~Pi~ida~y~~ 239 (288)
T KOG1563|consen 182 GQPEGHVELVGVVRKTE--TRPQFTPVNKPESNVWYYRDLPKMARATGTEPILIDALYDD 239 (288)
T ss_pred CCccceEEEEEEEecCC--CCCCcccccCCcccceeecCHHHHHHHcCCCceEeecccCc
Confidence 35789999999999999 999999999 79999999999999999999999998773
No 3
>PF02104 SURF1: SURF1 family; InterPro: IPR002994 The surfeit locus 1 gene (SURF1 or surf-1) encodes a conserved protein of about 300 amino-acid residues that seems to be involved in the biogenesis of cytochrome c oxidase []. Vertebrate SURF1 is evolutionary related to yeast protein SHY1. There seems to be two transmembrane regions in these proteins, one in the N-terminal, the other in the C-terminal. Rickettsia prowazekii protein RP733 is also a member of this protein family.; GO: 0016020 membrane
Probab=100.00 E-value=5.8e-37 Score=276.54 Aligned_cols=171 Identities=30% Similarity=0.393 Sum_probs=145.6
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCC
Q 021538 76 FLPGAISFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISG 155 (311)
Q Consensus 76 ~v~~~v~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~~~G 155 (311)
++++++|++||+||++|++||++++++++++.+++|+++++....+...++.+||+|+++|+|++++++||+||.++ |
T Consensus 2 l~~~~~~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~~~~~~~~~r~V~~~G~~~~~~~~ll~~r~~~--g 79 (212)
T PF02104_consen 2 LLAIALLVGLGFWQLDRAQWKQALIARIEARLSAPPVPLPDLLDPDALPEDLEYRRVTVSGRFDPEKQILLDNRSRD--G 79 (212)
T ss_pred ChHHHHHHHHCHHHhCHHHHHHHHHHHHHHHhhCCCcCCccccccccCccccCceEEEEEEEECCCceEEEeccccC--C
Confidence 35678899999999999999999999999999999999998863222456899999999999999999999999984 5
Q ss_pred CCcccEEEEeEeeecCCCCCCCCccEEEEeecccCCCCCCC-cccccCCCCcCCCCcccccccccchhhhhccCCCCccc
Q 021538 156 VTENGYYVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKS-SEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVEL 234 (311)
Q Consensus 156 ~~~~GY~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~~g 234 (311)
++||+|+|||++++| ..|||||||||.+..++. .+. + .|+.+.|
T Consensus 80 --~~Gy~Vltp~~~~dg------~~vlVnRGWvp~~~~~~~~~p~-~--------------------------~p~~~~g 124 (212)
T PF02104_consen 80 --RPGYHVLTPFRLDDG------RAVLVNRGWVPAEAADRAALPE-Q--------------------------VPAPPSG 124 (212)
T ss_pred --CceEEEEEEEEecCC------cEEEEEecccccccCCcccccc-c--------------------------ccCCCCc
Confidence 999999999999866 699999999998755432 111 0 0234579
Q ss_pred eEEEEEEEeccccccC-CccccCC---CCeeEeeCHHHHHHhhC--CCceEEeeccc
Q 021538 235 LVLFVGVRSQAFLYQQ-MIQAPVN---GSMWMFLQLLVLVGSLK--TLSILRTPMKM 285 (311)
Q Consensus 235 ~vtVtGvlr~~E~~~~-~~f~p~n---~~~w~~iDl~~ma~~lg--~~p~~~~a~~~ 285 (311)
+++|+|+|+++| .+ +.|.+.| .++|+++|+++|++.+| ..|++|+....
T Consensus 125 ~~~v~G~l~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~a~~~g~~~~p~~l~~~~~ 179 (212)
T PF02104_consen 125 EVTVTGRLRPPE--PRGGIFTPENDPEPNRWQSIDLEAMAQALGLPLAPFYLQQDAD 179 (212)
T ss_pred eEEEEEEEECCC--CcCCcCccCCCCCCceEEecCHHHHHHHhCCCCCCeEEEeccC
Confidence 999999999988 66 5788876 99999999999999999 78999998776
No 4
>cd06662 SURF1 SURF1 superfamily. Surf1/Shy1 has been implicated in the posttranslational steps of the biogenesis of the mitochondrially-encoded Cox1 subunit of cytochrome c oxidase (complex IV). Cytochrome c oxidase (complex IV), the terminal electron-transferring complex of the respiratory chain, is an assemblage of nuclear and mitochondrially-encoded subunits. Its assembly is mediated by nuclear encoded assembly factors, one of which is Surf1/Shy1. Mutations in human Surf1 are a major cause of Leigh syndrome, a severe neurodegenerative disorder.
Probab=100.00 E-value=3.5e-33 Score=248.83 Aligned_cols=152 Identities=28% Similarity=0.399 Sum_probs=131.8
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCcCCcceeEEEEEEEEeCCceEEEccccccCCCCCcccE
Q 021538 82 SFGLGTWQIFRRQDKIKMLEYRQNRLQMDPLRLNITSPLTEDLKSLEFRRVICQGVFDEQRSIYVGPRSRSISGVTENGY 161 (311)
Q Consensus 82 ~v~LG~WQl~R~~wK~~Li~~i~~r~~a~Pv~l~~~~~~~~~~~~~eyRrV~vtG~f~~~~~vLV~nR~~~~~G~~~~GY 161 (311)
|++||+||++|++||+++|++++++.+++|+++++..... .++.+||+|+++|+|+++++++++||.++ | +.||
T Consensus 1 ~~~LG~WQl~R~~~K~~l~~~~~~~~~~~pv~l~~~~~~~--~~~~~~r~V~v~G~~~~~~~~ll~~r~~~--g--~~Gy 74 (202)
T cd06662 1 LVGLGFWQLQRAEWKEALIARIEARLAAPPVPLPELLAPP--LEDLEYRRVTVTGTFLPEKEVLLDNRTRD--G--RPGY 74 (202)
T ss_pred CccccHHHHhHHHHHHHHHHHHHHHhcCCCCCCCcccccc--ccccceEEEEEEEEECCCCEEEEeccccC--C--CCce
Confidence 6799999999999999999999999999999999876422 46789999999999999999999999974 5 8999
Q ss_pred EEEeEeeecCCCCCCCCccEEEEeecccCCCCCCCcccccCCCCcCCCCcccccccccchhhhhccCCCCccceEEEEEE
Q 021538 162 YVITPLMPIPNNPQSVKSPVLVNRGWVPRSWRDKSSEVSRDSEQPLNLAPSVQQSQQSSWWWFWLKKPNIVELLVLFVGV 241 (311)
Q Consensus 162 ~VlTPf~~~dg~~g~~~~~VLVNRGWVp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~~~p~~~~g~vtVtGv 241 (311)
+|++||++++| +.|||||||||.+..+...+. ...+.|+++|+|+
T Consensus 75 ~vl~p~~~~~g------~~ilVnrGwv~~~~~~~~~~~-----------------------------~~~p~g~~~v~G~ 119 (202)
T cd06662 75 EVLTPFRLDDG------RTVLVNRGWVPADADRPALPA-----------------------------VAPPTGEVTVTGR 119 (202)
T ss_pred EEEeeeEECCC------CEEEEECCCCCCCccCcccCC-----------------------------CCCCCccEEEEEE
Confidence 99999999876 689999999998866543221 1246799999999
Q ss_pred EeccccccCCccccCC---CCeeEeeCHHHHHHhhCCC
Q 021538 242 RSQAFLYQQMIQAPVN---GSMWMFLQLLVLVGSLKTL 276 (311)
Q Consensus 242 lr~~E~~~~~~f~p~n---~~~w~~iDl~~ma~~lg~~ 276 (311)
++.+| .++.+.+.+ .+.|+.+|+++|++.+|..
T Consensus 120 l~~~~--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 155 (202)
T cd06662 120 LRPPE--PRGLFLPPNDPAANPWQNRDLEAMAQALGLP 155 (202)
T ss_pred EecCC--CCCCcCCCCCcccccccccCHHHHHHHHCCC
Confidence 99999 777776655 7889999999999999985
No 5
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=81.18 E-value=1.1 Score=38.38 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 021538 69 TWSKWLLFLPGAISFGLGTWQIFRRQDKIK 98 (311)
Q Consensus 69 ~w~~lll~v~~~v~v~LG~WQl~R~~wK~~ 98 (311)
.|+.++++++..+++.||-||+.|.+.--.
T Consensus 9 ~~lI~~~vi~w~~q~algwwQ~srfq~af~ 38 (128)
T COG4578 9 PALIALAVIAWCAQLALGWWQWSRFQSAFG 38 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666667789999999999986544
No 6
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=51.75 E-value=7.7 Score=32.67 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHhhcchhhhhhH
Q 021538 69 TWSKWLLFLPGAISFGLGTWQIFRR 93 (311)
Q Consensus 69 ~w~~lll~v~~~v~v~LG~WQl~R~ 93 (311)
+|++++++|++++++.+++....|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 4665555555555444444444443
No 7
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.25 E-value=24 Score=31.06 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=25.0
Q ss_pred CccceEEEEEEEeccccc----cCCccccCCCCeeEeeCHH
Q 021538 231 IVELLVLFVGVRSQAFLY----QQMIQAPVNGSMWMFLQLL 267 (311)
Q Consensus 231 ~~~g~vtVtGvlr~~E~~----~~~~f~p~n~~~w~~iDl~ 267 (311)
+..+.|+++++....+-. ..+.|+.. +++|||+|-.
T Consensus 89 ~~~~~VeF~A~f~~~~~~~a~~ErSrFvk~-ngrWyyiDgt 128 (151)
T COG3012 89 PNHGFVEFVARFKGGGKTGAHHERSRFVKI-NGRWYYIDGT 128 (151)
T ss_pred CcceeEEEEEEEccCCccchhhhhhhheEE-CCEEEEECCC
Confidence 356899999998765400 24456655 6999999943
No 8
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.02 E-value=31 Score=25.57 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHHHHHhhcchhhhh
Q 021538 64 SAPSSTWSKWLLFLPGAISFGLGTWQIF 91 (311)
Q Consensus 64 ~~~~~~w~~lll~v~~~v~v~LG~WQl~ 91 (311)
+.|+++|.++++++++++.++|-.|=+.
T Consensus 25 R~PFrP~~Ll~~li~Vv~gl~llS~ll~ 52 (55)
T PF11293_consen 25 RKPFRPWRLLIVLIVVVIGLGLLSRLLS 52 (55)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788776666555554444444333
No 9
>COG3768 Predicted membrane protein [Function unknown]
Probab=37.43 E-value=50 Score=32.71 Aligned_cols=57 Identities=21% Similarity=0.198 Sum_probs=26.9
Q ss_pred cCCcccccc----ccccccC-CCccCCCCcccccccccCCC-CCchHHHHHHHHHHHHHhhcchh
Q 021538 30 RAPPRLYSS----SAAAALS-SAPQLSSSSQDQENVRKGSA-PSSTWSKWLLFLPGAISFGLGTW 88 (311)
Q Consensus 30 ~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~w~~lll~v~~~v~v~LG~W 88 (311)
|++||.|.+ ++++..+ -++..-.. -+. ...++.+ +.+.|.+.+....+.++++.|.|
T Consensus 20 ~r~~r~f~~~~~~~~pa~~D~e~~~d~~~-ae~-~~~a~~rpr~s~~k~~~~a~~vLf~~Av~~q 82 (350)
T COG3768 20 FRAPREFDEDAENFTPAELDVEDPEDEGA-AEA-PVEAPLRPRSSFWKIMLGAGGVLFSLAVGLQ 82 (350)
T ss_pred ccCccccchHHHhcCccccccccccchhh-hhh-HHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 889999996 5654444 11111000 001 1122322 33455555555455555666666
No 10
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.42 E-value=77 Score=25.54 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=15.0
Q ss_pred HHHHHHHhhcchhhhhhHHHH
Q 021538 76 FLPGAISFGLGTWQIFRRQDK 96 (311)
Q Consensus 76 ~v~~~v~v~LG~WQl~R~~wK 96 (311)
+.++++.++...||+.+++..
T Consensus 11 ~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445567888999998877
No 11
>PRK00183 hypothetical protein; Provisional
Probab=30.96 E-value=55 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred ccceEEEEEEEeccccc----cCCccccCCCCeeEeeCH
Q 021538 232 VELLVLFVGVRSQAFLY----QQMIQAPVNGSMWMFLQL 266 (311)
Q Consensus 232 ~~g~vtVtGvlr~~E~~----~~~~f~p~n~~~w~~iDl 266 (311)
.+|+|++++..+..... ..+.|... +++|||+|-
T Consensus 91 ~~g~VeF~A~y~~~g~~~~lhE~S~F~r~-~g~W~YvDG 128 (157)
T PRK00183 91 EHAFVTFTARWHDADGEHSHRERSAFVQH-QGRWYFIDP 128 (157)
T ss_pred ceEEEEEEEEEecCCCccceeeeeeeeEe-CCEEEeccc
Confidence 35899999998643300 23456655 699999994
No 12
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=30.85 E-value=1.5e+02 Score=29.40 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=5.0
Q ss_pred HHhhcchhhh
Q 021538 81 ISFGLGTWQI 90 (311)
Q Consensus 81 v~v~LG~WQl 90 (311)
+.++.|.|.+
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 3345556644
No 13
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.56 E-value=2e+02 Score=30.90 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.8
Q ss_pred hhhhhcc
Q 021538 14 KTLTKLG 20 (311)
Q Consensus 14 ~~~~~~~ 20 (311)
+++.++|
T Consensus 238 ~~a~~~G 244 (656)
T PRK06975 238 EQARALG 244 (656)
T ss_pred HHHHHcC
Confidence 4555555
No 14
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=25.07 E-value=81 Score=23.66 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=19.9
Q ss_pred CCCchHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 021538 65 APSSTWSKWLLFLPGAISFGLGTWQIFRRQDK 96 (311)
Q Consensus 65 ~~~~~w~~lll~v~~~v~v~LG~WQl~R~~wK 96 (311)
.|.++| ++.++.+.++..|.||+-+.-.+
T Consensus 43 ~p~G~~---ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 43 QPFGRW---LLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred CCCcHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345565 44555667778999999887543
No 15
>PTZ00370 STEVOR; Provisional
Probab=23.99 E-value=57 Score=31.81 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.8
Q ss_pred ccCCCCCchHHHHHHHHHHHHHhhcchhhhhhHH--HHHH
Q 021538 61 RKGSAPSSTWSKWLLFLPGAISFGLGTWQIFRRQ--DKIK 98 (311)
Q Consensus 61 ~~~~~~~~~w~~lll~v~~~v~v~LG~WQl~R~~--wK~~ 98 (311)
+++.|.+=...+++++++.++++.|-.|-..|+. ||++
T Consensus 250 AsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 250 ASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4555666666677777788888999999999874 7765
No 16
>PRK01752 hypothetical protein; Provisional
Probab=23.27 E-value=94 Score=27.52 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=22.6
Q ss_pred ccceEEEEEEEecccc----ccCCccccCCCCeeEeeCH
Q 021538 232 VELLVLFVGVRSQAFL----YQQMIQAPVNGSMWMFLQL 266 (311)
Q Consensus 232 ~~g~vtVtGvlr~~E~----~~~~~f~p~n~~~w~~iDl 266 (311)
.+|+|++.+..+.... ...+.|... +++|+|+|-
T Consensus 92 ~~g~VeF~A~y~~~g~~~~~hE~S~F~r~-~g~W~YvDG 129 (156)
T PRK01752 92 IHSAVEFKAIFQGEEGEQAHHERSLFVKI-DNRWYFVDP 129 (156)
T ss_pred ceEEEEEEEEEecCCCccccchhhhheec-cCCEEEecC
Confidence 4589999999864320 023345554 699999994
No 17
>PF14981 FAM165: FAM165 family
Probab=23.08 E-value=2.5e+02 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHH
Q 021538 78 PGAISFGLGTWQIFRRQDKIKMLEYRQ 104 (311)
Q Consensus 78 ~~~v~v~LG~WQl~R~~wK~~Li~~i~ 104 (311)
++..+.+.-.||-.|.+.|....+.-+
T Consensus 20 lClaFAgvK~yQ~krlEak~~k~~aek 46 (51)
T PF14981_consen 20 LCLAFAGVKMYQRKRLEAKLKKLEAEK 46 (51)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445677899999999987665443
No 18
>PRK01842 hypothetical protein; Provisional
Probab=23.07 E-value=94 Score=27.38 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=23.2
Q ss_pred ccceEEEEEEEeccccc----cCCccccCCCCeeEeeC
Q 021538 232 VELLVLFVGVRSQAFLY----QQMIQAPVNGSMWMFLQ 265 (311)
Q Consensus 232 ~~g~vtVtGvlr~~E~~----~~~~f~p~n~~~w~~iD 265 (311)
.+|.|++....+..... ..+.|...++++|+|+|
T Consensus 107 ~~G~VeF~A~y~~~g~~~~lhErS~F~r~~~G~W~YvD 144 (149)
T PRK01842 107 THAEVEFVARYKVGGRAHRLHETSRFVRDEQGRWRYVD 144 (149)
T ss_pred ceEEEEEEEEEecCCCeEEEEEeeeeEECCCCeEEEeC
Confidence 35899999988643211 34567764258999998
No 19
>PRK04233 hypothetical protein; Provisional
Probab=21.18 E-value=1e+02 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=22.6
Q ss_pred ccceEEEEEEEecccc-----ccCCccccCCCCeeEeeC
Q 021538 232 VELLVLFVGVRSQAFL-----YQQMIQAPVNGSMWMFLQ 265 (311)
Q Consensus 232 ~~g~vtVtGvlr~~E~-----~~~~~f~p~n~~~w~~iD 265 (311)
.+|.|++.+..+.... ...+.|... +|+|+|+|
T Consensus 90 ~~g~VeF~A~y~~~~~~~~~~hE~S~F~r~-~g~W~YvD 127 (129)
T PRK04233 90 DTAEVVFLARYRIGGGSAVRMTEHSRFVRE-DGRWYYLD 127 (129)
T ss_pred ceEEEEEEEEEEcCCCceeEEEEeeeEEEE-CCEEEEec
Confidence 3589999998864421 124456655 69999998
No 20
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=20.85 E-value=1.5e+02 Score=25.20 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=13.9
Q ss_pred HHHHHhhcchhhhhhHHHH
Q 021538 78 PGAISFGLGTWQIFRRQDK 96 (311)
Q Consensus 78 ~~~v~v~LG~WQl~R~~wK 96 (311)
+.++=..||.||+.+...-
T Consensus 12 a~llQ~~lg~~Qik~Fn~~ 30 (118)
T PRK10234 12 AWCAQLALGGWQISRFNRA 30 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344469999999998744
No 21
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=20.32 E-value=1.2e+02 Score=26.04 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHH--HHHHHHHHHHhcCCCccc
Q 021538 72 KWLLFLPGAISFGLGTWQIFRRQDK--IKMLEYRQNRLQMDPLRL 114 (311)
Q Consensus 72 ~lll~v~~~v~v~LG~WQl~R~~wK--~~Li~~i~~r~~a~Pv~l 114 (311)
...+++..+++++.|+|++.....+ +..++....+++.-|+=.
T Consensus 31 g~~~~~~~~~~~~~G~y~~~~~~r~~r~~~~E~~~ar~al~PlLq 75 (130)
T PF06212_consen 31 GWTMFAGGAGIMAYGFYKVGQGNRERRELKREKRWARIALLPLLQ 75 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Confidence 3344455566667888887655433 334455555666555433
No 22
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=20.28 E-value=1.6e+02 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHH
Q 021538 74 LLFLPGAISFGLGTWQIFRRQDKI 97 (311)
Q Consensus 74 ll~v~~~v~v~LG~WQl~R~~wK~ 97 (311)
+++++.++=..||.||+.+....-
T Consensus 7 ~~~~~~~lQ~~l~~~Qik~f~~~~ 30 (109)
T PF06923_consen 7 LLVIAWLLQILLGWFQIKNFNKAY 30 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444799999999987543
No 23
>PRK01617 hypothetical protein; Provisional
Probab=20.06 E-value=1e+02 Score=27.18 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=22.4
Q ss_pred ccceEEEEEEEeccc------cccCCccccCCCCeeEeeCH
Q 021538 232 VELLVLFVGVRSQAF------LYQQMIQAPVNGSMWMFLQL 266 (311)
Q Consensus 232 ~~g~vtVtGvlr~~E------~~~~~~f~p~n~~~w~~iDl 266 (311)
.+|.|++.+..+... ....+.|... +++|+|+|=
T Consensus 90 ~~g~VeF~A~y~~~g~~~~~~~~ErS~F~r~-~g~W~Yvdg 129 (154)
T PRK01617 90 NEGFVEFVARFTEGGKTGRTAIIERSRFLKE-NGQWYYIDG 129 (154)
T ss_pred ceEEEEEEEEEecCCccccceEEEeeeeEEe-CCCEEecCC
Confidence 458899999886433 0012345544 799999993
Done!