Query 021538
Match_columns 311
No_of_seqs 194 out of 985
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 39.8 15 0.0005 22.9 1.7 27 68-94 4-30 (32)
2 2jq5_A SEC-C motif; structural 18.9 56 0.0019 26.7 2.2 31 234-265 88-123 (128)
3 2i9w_A Hypothetical protein; c 7.4 1.7E+02 0.0057 25.4 1.7 35 233-267 114-157 (184)
4 1rpb_A Tricyclic peptide RP 71 7.0 98 0.0034 18.4 0.0 9 301-309 1-9 (26)
5 3kkg_A Putative snoal-like pol 6.5 3E+02 0.01 21.0 2.7 20 258-277 125-144 (146)
6 2f93_B Sensory rhodopsin II tr 5.8 2.9E+02 0.01 22.4 2.2 20 69-88 61-80 (122)
7 1oqw_A Fimbrial protein; type 5.7 8.1E+02 0.028 19.1 5.0 28 74-101 8-35 (144)
8 1rz2_A Conserved hypothetical 5.7 1.3E+02 0.0044 26.7 0.0 7 99-105 45-51 (254)
9 4gac_A Alcohol dehydrogenase [ 5.6 2.1E+02 0.007 25.7 1.4 16 83-98 16-31 (324)
10 3k0z_A Putative polyketide cyc 5.0 4.1E+02 0.014 20.9 2.7 18 260-277 140-157 (159)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=39.78 E-value=15 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHhhcchhhhhhHH
Q 021538 68 STWSKWLLFLPGAISFGLGTWQIFRRQ 94 (311)
Q Consensus 68 ~~w~~lll~v~~~v~v~LG~WQl~R~~ 94 (311)
.-|-.+.-++++..++..|+|-+.-++
T Consensus 4 tiweviaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666677777899999876554
No 2
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=18.94 E-value=56 Score=26.72 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=21.2
Q ss_pred ceEEEEEEEeccccc-----cCCccccCCCCeeEeeC
Q 021538 234 LLVLFVGVRSQAFLY-----QQMIQAPVNGSMWMFLQ 265 (311)
Q Consensus 234 g~vtVtGvlr~~E~~-----~~~~f~p~n~~~w~~iD 265 (311)
|.|++.++.+..... ..+.|... +++|||+|
T Consensus 88 g~VeF~A~y~~~g~~~~~~hE~SrF~r~-~g~W~YvD 123 (128)
T 2jq5_A 88 GTVEFIARFRRGGGPEQSHHERSQFRKA-RGRWYFSE 123 (128)
T ss_dssp EEEEEEEEEEESSSCEEEEEEEEEEEEE-TTEEEEEE
T ss_pred EEEEEEEEEEeCCCceeEEEEeeeEEEE-CCEEEEeC
Confidence 889999988754300 23346555 69999998
No 3
>2i9w_A Hypothetical protein; cystatin-like fold, SEC-C motif fold, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=7.36 E-value=1.7e+02 Score=25.44 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=22.2
Q ss_pred cceEEEEEEEecccc----ccCCccccCC-----CCeeEeeCHH
Q 021538 233 ELLVLFVGVRSQAFL----YQQMIQAPVN-----GSMWMFLQLL 267 (311)
Q Consensus 233 ~g~vtVtGvlr~~E~----~~~~~f~p~n-----~~~w~~iDl~ 267 (311)
+|.|++.++.+.... -..+.|...+ .++|||+|-.
T Consensus 114 ~g~VeF~A~y~~~g~~~~lhErSrFvr~~G~~~~~~rW~YvDG~ 157 (184)
T 2i9w_A 114 HAQVEFKAYFKTPDGLQAHHELSTFVKIKNKANSDASWYFLDPT 157 (184)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEECSSSSCEEEEECCSS
T ss_pred ccEEEEEEEEecCCCccceehhccceecCCccccccceeeccCC
Confidence 578999888874320 0244576553 2399999943
No 4
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=7.00 E-value=98 Score=18.35 Aligned_cols=9 Identities=44% Similarity=1.235 Sum_probs=7.2
Q ss_pred eeeecchhc
Q 021538 301 CFGVQSCLK 309 (311)
Q Consensus 301 ~~~~~~~~~ 309 (311)
|+|+.||-.
T Consensus 1 clgigscn~ 9 (26)
T 1rpb_A 1 CLGIGSCND 9 (26)
T ss_dssp CBSCSSBCS
T ss_pred CcceecccC
Confidence 889999853
No 5
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=6.47 E-value=3e+02 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.8
Q ss_pred CCeeEeeCHHHHHHhhCCCc
Q 021538 258 GSMWMFLQLLVLVGSLKTLS 277 (311)
Q Consensus 258 ~~~w~~iDl~~ma~~lg~~p 277 (311)
...|.+.|...|.++||..|
T Consensus 125 ~e~~~~~D~~~l~~Qlg~~p 144 (146)
T 3kkg_A 125 IEMRYFTDLLAVMTAISAPP 144 (146)
T ss_dssp EEEEEEECHHHHHHHHTCCC
T ss_pred EEEEEecCHHHHHHHcCCCC
Confidence 45899999999999999876
No 6
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=5.76 E-value=2.9e+02 Score=22.37 Aligned_cols=20 Identities=15% Similarity=-0.160 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHhhcchh
Q 021538 69 TWSKWLLFLPGAISFGLGTW 88 (311)
Q Consensus 69 ~w~~lll~v~~~v~v~LG~W 88 (311)
.|..++.+++++.+..+|.|
T Consensus 61 ~~liil~~v~lv~LgvvG~~ 80 (122)
T 2f93_B 61 SAILGLIILLGINLGLVAAT 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555565666677777
No 7
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=5.71 E-value=8.1e+02 Score=19.10 Aligned_cols=28 Identities=7% Similarity=-0.135 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 021538 74 LLFLPGAISFGLGTWQIFRRQDKIKMLE 101 (311)
Q Consensus 74 ll~v~~~v~v~LG~WQl~R~~wK~~Li~ 101 (311)
+++++++++..++.-.+++...|.++.+
T Consensus 8 ivi~Ii~il~~ia~p~~~~~~~~~~~~~ 35 (144)
T 1oqw_A 8 IVVAIIGILAAIAIPQYQNYVARSEGAS 35 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555544433
No 8
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=5.66 E-value=1.3e+02 Score=26.74 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021538 99 MLEYRQN 105 (311)
Q Consensus 99 Li~~i~~ 105 (311)
..+++++
T Consensus 45 ~~~~l~~ 51 (254)
T 1rz2_A 45 VMAEAQN 51 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 9
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=5.60 E-value=2.1e+02 Score=25.66 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=11.2
Q ss_pred hhcchhhhhhHHHHHH
Q 021538 83 FGLGTWQIFRRQDKIK 98 (311)
Q Consensus 83 v~LG~WQl~R~~wK~~ 98 (311)
++||+||++..+-+..
T Consensus 16 iGlGtw~~~~~~a~~~ 31 (324)
T 4gac_A 16 IGLGTWKSEPGQVKAA 31 (324)
T ss_dssp BCEECTTCCHHHHHHH
T ss_pred ceeECCCCCHHHHHHH
Confidence 4799999877554433
No 10
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=4.95 E-value=4.1e+02 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred eeEeeCHHHHHHhhCCCc
Q 021538 260 MWMFLQLLVLVGSLKTLS 277 (311)
Q Consensus 260 ~w~~iDl~~ma~~lg~~p 277 (311)
.|.+.|...|.+++|..|
T Consensus 140 ~~~~~D~~~ll~QLG~~P 157 (159)
T 3k0z_A 140 DWHLEDNLTLKQQLGLIA 157 (159)
T ss_dssp EEEEECHHHHHHHTTSCC
T ss_pred EEEeeCHHHHHHHcCCCC
Done!