BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021539
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TEX|A Chain A, Mycobacterium Smegmatis Stf0 Sulfotransferase With
           Trehalose
 pdb|1TEX|B Chain B, Mycobacterium Smegmatis Stf0 Sulfotransferase With
           Trehalose
 pdb|1TEX|C Chain C, Mycobacterium Smegmatis Stf0 Sulfotransferase With
           Trehalose
 pdb|1TEX|D Chain D, Mycobacterium Smegmatis Stf0 Sulfotransferase With
           Trehalose
          Length = 287

 Score = 27.7 bits (60), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 13/128 (10%)

Query: 157 AMLMIGESYPFFKGNYYLTIISEESDYIKGFAAQKESKVIAAPETWLDLRIKG------S 210
           A  + GE   FF+   YL   S      + FA  ++  ++      LD  I+G      +
Sbjct: 47  ATGVAGEPQEFFQ---YLPNTSMSPQPREWFADVEDQSILRL----LDPLIEGKPDLAPA 99

Query: 211 QLSQNFRRKCKYTPKGLFSYPVVVNGTRYSMHWISEAHRNAWHVLLDATGLVFGEDQLAL 270
            + +++ +    TP G++   ++ N T   +    +    +   LL A   V G D + +
Sbjct: 100 TIWRDYIQTVGRTPNGVWGGKLMWNQTPLLVQRAKDLPDRSGSGLLSAIRDVVGSDPVLI 159

Query: 271 ALHRPDLV 278
            +HRPD+V
Sbjct: 160 HIHRPDVV 167


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,118,190
Number of Sequences: 62578
Number of extensions: 370171
Number of successful extensions: 751
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 1
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)