Your job contains 1 sequence.
>021540
MNDNCDNCDTNSLGSWKDAAETNSMGSWKDGTNGGSEPDQEASASSGLAFESHLAETPSP
RMSWADMAQEDELEEEGEEEQCKVNKQVNDGVNVLKEESSVSKVVQKPMLSREEREHMRF
MHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEK
TYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWH
VLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEF
AGSIPIALPVG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021540
(311 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060964 - symbol:AT2G17970 species:3702 "Arabi... 951 1.2e-95 1
TAIR|locus:2135124 - symbol:AT4G36090 species:3702 "Arabi... 899 4.0e-90 1
TAIR|locus:2028486 - symbol:AT1G48980 species:3702 "Arabi... 742 1.7e-73 1
TAIR|locus:2139345 - symbol:AT4G02940 species:3702 "Arabi... 245 5.7e-20 1
TAIR|locus:2006717 - symbol:AT1G14710 "AT1G14710" species... 243 1.1e-19 1
TAIR|locus:2066385 - symbol:AT2G48080 species:3702 "Arabi... 220 1.5e-17 1
UNIPROTKB|F1NIA5 - symbol:ALKBH5 "Uncharacterized protein... 152 1.3e-08 2
UNIPROTKB|Q66JG8 - symbol:alkbh5 "RNA demethylase ALKBH5"... 146 1.1e-07 1
RGD|1309496 - symbol:Alkbh5 "alkB, alkylation repair homo... 144 2.3e-07 1
UNIPROTKB|E1BH29 - symbol:ALKBH5 "RNA demethylase ALKBH5"... 143 3.0e-07 1
UNIPROTKB|Q6P6C2 - symbol:ALKBH5 "RNA demethylase ALKBH5"... 143 3.0e-07 1
MGI|MGI:2144489 - symbol:Alkbh5 "alkB, alkylation repair ... 143 3.0e-07 1
UNIPROTKB|E2RPR0 - symbol:ALKBH5 "Uncharacterized protein... 143 3.6e-07 1
UNIPROTKB|Q6GPB5 - symbol:alkbh5 "RNA demethylase ALKBH5"... 141 4.2e-07 1
ZFIN|ZDB-GENE-061013-602 - symbol:alkbh5 "alkB, alkylatio... 139 6.8e-07 1
WB|WBGene00007581 - symbol:alkb-8 species:6239 "Caenorhab... 115 0.00084 1
>TAIR|locus:2060964 [details] [associations]
symbol:AT2G17970 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0016706 "oxidoreductase activity,
acting on paired donors, with incorporation or reduction of
molecular oxygen, 2-oxoglutarate as one donor, and incorporation of
one atom each of oxygen into both donors" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR005123 Pfam:PF03171
PROSITE:PS51471 GO:GO:0009506 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016706 EMBL:AC006201
HOGENOM:HOG000015189 EMBL:BT010563 EMBL:AK175991 IPI:IPI00529507
PIR:F84558 PIR:T00828 RefSeq:NP_179387.1 UniGene:At.40074
ProteinModelPortal:Q9SL49 PRIDE:Q9SL49 ProMEX:Q9SL49
EnsemblPlants:AT2G17970.1 GeneID:816307 KEGG:ath:AT2G17970
TAIR:At2g17970 InParanoid:Q9SL49 OMA:NPERSSE PhylomeDB:Q9SL49
ProtClustDB:CLSN2683920 ArrayExpress:Q9SL49 Genevestigator:Q9SL49
Uniprot:Q9SL49
Length = 507
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 187/312 (59%), Positives = 226/312 (72%)
Query: 2 NDNCDNCDTNSLGSWKDAAETNSMGSWKDGTN--GGSEPDQEASASSGLAFESHLAETPS 59
N+ DN D S + + +S+GSWK G+ GS P+ SS L + ET S
Sbjct: 82 NNVDDNYDEKSENG--EDCDNHSLGSWK-GSEIVFGSFPED---FSSVLQSRPAVVETAS 135
Query: 60 PRMSWADMAQXXXXXXXXXXXQCKVNKQVNDGVNVLXXXXXXXXXXQKPMLSREEREHMR 119
PRM WADMAQ + + G + +KP LSR++RE++R
Sbjct: 136 PRMRWADMAQEDEFDEEEEEEE-EERDSSRKGFDA-----SSMKTPEKPKLSRDQRENLR 189
Query: 120 FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKE 179
++V+RKKDFICLE++KGKIVN+L GLELH G+FSA EQKRIVD V+ L E G +GELK+
Sbjct: 190 LINVKRKKDFICLERVKGKIVNVLDGLELHTGVFSAVEQKRIVDQVYQLQEKGRRGELKK 249
Query: 180 KTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKW 239
+T++AP KWMRGKGR TIQFGCCYNYA D+ GNPPGILQ E VDPLPHLFKVIIR+L+KW
Sbjct: 250 RTFTAPHKWMRGKGRETIQFGCCYNYAPDRAGNPPGILQREEVDPLPHLFKVIIRKLIKW 309
Query: 240 HVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299
HVLPPTCVPDSCIVNIY+EGDCIPPHIDNHDF+RPFCT+SFLSEC+I+FGSNLKV G G+
Sbjct: 310 HVLPPTCVPDSCIVNIYDEGDCIPPHIDNHDFLRPFCTISFLSECDILFGSNLKVEGPGD 369
Query: 300 FAGSIPIALPVG 311
F+GS I LPVG
Sbjct: 370 FSGSYSIPLPVG 381
>TAIR|locus:2135124 [details] [associations]
symbol:AT4G36090 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005123
PROSITE:PS51471 EMBL:CP002687 GO:GO:0016706 Pfam:PF13532
EMBL:BT020221 EMBL:BT021118 IPI:IPI00657386 RefSeq:NP_001031794.1
UniGene:At.50399 ProteinModelPortal:Q5RJC7 PRIDE:Q5RJC7
EnsemblPlants:AT4G36090.3 GeneID:829765 KEGG:ath:AT4G36090
TAIR:At4g36090 HOGENOM:HOG000015189 InParanoid:Q5RJC7
PhylomeDB:Q5RJC7 ProtClustDB:CLSN2681466 Genevestigator:Q5RJC7
Uniprot:Q5RJC7
Length = 520
Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
Identities = 176/291 (60%), Positives = 212/291 (72%)
Query: 22 TNSMGSWKDGTNG-GSEPDQEASASSGLAFESHLAETPSPRMSWADMAQXXXXXXXXXXX 80
++S+ S K G GS D + A + +S ++E S +MSWADM +
Sbjct: 101 SHSLDSLKAGAFVFGSLSDSVSHAMP--SSQSTVSEAASAQMSWADMGEEDGLEEEDQ-- 156
Query: 81 QCKVNKQVNDGVNVLXXXXXXXXXXQKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIV 140
K N+ + GV+V +K LSREERE RFM+V++ K F C EK++G+ V
Sbjct: 157 --KENELGSHGVDVSPSVGDSMKTPEKRKLSREERERYRFMNVKKMKVFSCYEKVRGRSV 214
Query: 141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFG 200
NIL GLELH G+FSA EQK+IVDFV+ L E G +GEL+E+T++AP KWMRGKGR+TIQFG
Sbjct: 215 NILEGLELHTGVFSAVEQKKIVDFVYELQEKGRRGELRERTFTAPHKWMRGKGRVTIQFG 274
Query: 201 CCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGD 260
CCYNYA DK GNPPGILQ VDP+P +FKVII+RLV WHVLPPTCVPDSCIVNIYEE D
Sbjct: 275 CCYNYAPDKAGNPPGILQRGDVDPMPSIFKVIIKRLVGWHVLPPTCVPDSCIVNIYEEDD 334
Query: 261 CIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG 311
CIPPHIDNHDF+RPFCTVSFLSECNI+FGSNLKV+G GEF+GS I LPVG
Sbjct: 335 CIPPHIDNHDFLRPFCTVSFLSECNILFGSNLKVLGPGEFSGSYSIPLPVG 385
>TAIR|locus:2028486 [details] [associations]
symbol:AT1G48980 species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR005123 PROSITE:PS51471 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0016706 Pfam:PF13532
HOGENOM:HOG000015189 EMBL:AY735531 EMBL:AY924702 IPI:IPI00526630
RefSeq:NP_175328.2 UniGene:At.50945 ProteinModelPortal:Q5XVJ1
EnsemblPlants:AT1G48980.1 GeneID:841320 KEGG:ath:AT1G48980
TAIR:At1g48980 InParanoid:Q5XVJ1 OMA:GILKHET PhylomeDB:Q5XVJ1
ProtClustDB:CLSN2681398 Genevestigator:Q5XVJ1 Uniprot:Q5XVJ1
Length = 331
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 139/203 (68%), Positives = 168/203 (82%)
Query: 110 LSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLN 169
LSR++R H+R ++V+RK+DF+CLEK+ G++VNIL GLELH +F+AAEQ+RIVD V L
Sbjct: 68 LSRKQRTHIRAINVKRKRDFVCLEKVNGELVNILEGLELHTEVFNAAEQRRIVDKVCELQ 127
Query: 170 EMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLF 229
E KGELK + ++A +GKGR TIQFGCC+NY T K GN GIL++E VDPLPHLF
Sbjct: 128 EKVQKGELK-RAFTA-----QGKGRSTIQFGCCFNYRTSKTGNLAGILKHETVDPLPHLF 181
Query: 230 KVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFG 289
KVIIRRLVKWHVLPPTCVPD C+VNIY+EGDCIPPHID+HDF+RPFCTVSFLSECNI+FG
Sbjct: 182 KVIIRRLVKWHVLPPTCVPDCCVVNIYDEGDCIPPHIDHHDFLRPFCTVSFLSECNILFG 241
Query: 290 SNLKVVGAGEFAG-SIPIALPVG 311
SNLKV GE++G S + LPVG
Sbjct: 242 SNLKVEETGEYSGGSYSLPLPVG 264
>TAIR|locus:2139345 [details] [associations]
symbol:AT4G02940 species:3702 "Arabidopsis thaliana"
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0080167 "response to karrikin" evidence=IEP]
InterPro:IPR005123 Pfam:PF03171 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0080167 EMBL:AF069442 EMBL:AL161495
GO:GO:0016706 EMBL:AY093043 EMBL:AY128924 IPI:IPI00523972
PIR:T01399 RefSeq:NP_192203.1 UniGene:At.20270
ProteinModelPortal:Q9ZT92 IntAct:Q9ZT92 STRING:Q9ZT92 PaxDb:Q9ZT92
PRIDE:Q9ZT92 EnsemblPlants:AT4G02940.1 GeneID:828132
KEGG:ath:AT4G02940 TAIR:At4g02940 eggNOG:NOG294942
HOGENOM:HOG000077461 InParanoid:Q9ZT92 OMA:SESTMAY PhylomeDB:Q9ZT92
ProtClustDB:CLSN2685922 Genevestigator:Q9ZT92 Uniprot:Q9ZT92
Length = 569
Score = 245 (91.3 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 57/195 (29%), Positives = 98/195 (50%)
Query: 119 RFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELK 178
R ++ K F E++KG VN++ GL+L+E + E +++DFV L E G G+L
Sbjct: 215 RSCEIKPIKGFQAKEQVKGHTVNVVKGLKLYEELLKEDEISKLLDFVAELREAGINGKLA 274
Query: 179 EKTYSAPKKWMRGKGRITIQFGC-CYNYA-TDKNGNPPGILQNEPVDPLPHLFKVIIRRL 236
+++ K ++G R IQ G + + D+N N N ++P+P L + +I
Sbjct: 275 GESFILFNKQIKGNKRELIQLGVPIFGHVKADENSNDTNNSVN--IEPIPPLLESVIDHF 332
Query: 237 VKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVG 296
V W ++P P+ C++N +EEG+ P + +P T+ LSE + +G L
Sbjct: 333 VTWRLIPEYKRPNGCVINFFEEGEYSQPFLKPPHLEQPISTL-VLSESTMAYGRILSSDN 391
Query: 297 AGEFAGSIPIALPVG 311
G F G + ++L G
Sbjct: 392 EGNFRGPLTLSLKQG 406
>TAIR|locus:2006717 [details] [associations]
symbol:AT1G14710 "AT1G14710" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR005123
EMBL:CP002684 GO:GO:0005829 GO:GO:0016706 Pfam:PF13532
IPI:IPI01019363 RefSeq:NP_563957.1 RefSeq:NP_849663.1
UniGene:At.21234 UniGene:At.67634 ProteinModelPortal:F4HWB0
PRIDE:F4HWB0 EnsemblPlants:AT1G14710.1 EnsemblPlants:AT1G14710.2
GeneID:838036 KEGG:ath:AT1G14710 OMA:DACIIDF Uniprot:F4HWB0
Length = 601
Score = 243 (90.6 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 60/185 (32%), Positives = 96/185 (51%)
Query: 127 KDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPK 186
K F+ E K+VN++ GL+L++ + A E ++V V L G +G+L+ + Y K
Sbjct: 242 KTFVVQEMYDAKMVNVVEGLKLYDKMLDANEVSQLVSLVTNLRLAGRRGQLQSEAYVGYK 301
Query: 187 KWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTC 246
+ RG GR IQ G D + I ++ ++P+P II RLV ++P
Sbjct: 302 RPNRGHGREMIQLGLPI---ADTPPDDDSI-KDRRIEPIPSALSDIIERLVSKQIIPVK- 356
Query: 247 VPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPI 306
PD+CI++ + EGD PH+ F RP +S LSEC+ FG + G++ GS+ +
Sbjct: 357 -PDACIIDFFSEGDHSQPHMFVPWFGRPISVLS-LSECDYTFGRVIVSENPGDYKGSLKL 414
Query: 307 ALPVG 311
+L G
Sbjct: 415 SLTPG 419
>TAIR|locus:2066385 [details] [associations]
symbol:AT2G48080 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005123 Pfam:PF03171
EMBL:CP002685 GO:GO:0016706 IPI:IPI00540530 RefSeq:NP_182329.2
UniGene:At.43581 ProteinModelPortal:F4IN63 PRIDE:F4IN63
EnsemblPlants:AT2G48080.1 GeneID:819420 KEGG:ath:AT2G48080
OMA:VMCPSPN ArrayExpress:F4IN63 Uniprot:F4IN63
Length = 438
Score = 220 (82.5 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 54/195 (27%), Positives = 100/195 (51%)
Query: 123 VRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTY 182
+++ K F E ++G N++ GL+L++ +F+ + +++D ++ L E G +L +T+
Sbjct: 145 LKQSKRFSAKEHVRGHTANVVKGLKLYQDVFTRPQLSKLLDSINQLREAGRNHQLSGETF 204
Query: 183 SAPKKWMRGKGRITIQFGC-CYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHV 241
K +G R +Q G + TD++ V+P+P L + +I L++W +
Sbjct: 205 VLFNKNTKGTKRELLQLGVPIFGNTTDEHS----------VEPIPTLVQSVIDHLLQWRL 254
Query: 242 LPPTCVPDSCIVNIYEEGDCI-----PPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVG 296
+P P+ C++N ++E + PPH+D +P T+ LSE +VFG L V
Sbjct: 255 IPEYKRPNGCVINFFDEDEHSQPFQKPPHVD-----QPISTL-VLSESTMVFGHRLGVDN 308
Query: 297 AGEFAGSIPIALPVG 311
G F GS+ + L G
Sbjct: 309 DGNFRGSLTLPLKEG 323
>UNIPROTKB|F1NIA5 [details] [associations]
symbol:ALKBH5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0016706 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
2-oxoglutarate as one donor, and incorporation of one atom each of
oxygen into both donors" evidence=IEA] InterPro:IPR005123
GO:GO:0016706 Pfam:PF13532 GeneTree:ENSGT00390000009298 OMA:GAKRKYQ
EMBL:AADN02023711 IPI:IPI00580269 Ensembl:ENSGALT00000007980
Uniprot:F1NIA5
Length = 375
Score = 152 (58.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 49/144 (34%), Positives = 71/144 (49%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FSA E +I + + KG KE T AP +R K FG Y Y +
Sbjct: 73 LFSAEECAKIEARIDDVVSRAEKGLYKEHTVDRAP---LRNK----YFFGEGYTYGSQLQ 125
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + ++IR+LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 126 RRGPGQERLYPRGEVDAIPEWVHDLVIRKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 184
Query: 267 DN-HDFVRPFCTVSFLSECNIVFG 289
D H F RP +VSF S+ + FG
Sbjct: 185 DPIHIFERPIVSVSFFSDSALCFG 208
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 14 GS-WKDAAET-NSMGSWKDGTNGGSEPDQ 40
GS + D E SM ++DG+ G EP +
Sbjct: 4 GSGYTDLREKLKSMMPYRDGSKGPREPPE 32
>UNIPROTKB|Q66JG8 [details] [associations]
symbol:alkbh5 "RNA demethylase ALKBH5" species:8364
"Xenopus (Silurana) tropicalis" [GO:0001666 "response to hypoxia"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=ISS] [GO:0035515 "oxidative RNA demethylase
activity" evidence=ISS] [GO:0035553 "oxidative single-stranded RNA
demethylation" evidence=ISS] InterPro:IPR005123 GO:GO:0046872
GO:GO:0016706 GO:GO:0016702 Pfam:PF13532 CTD:54890 KO:K10767
eggNOG:NOG264303 HOGENOM:HOG000007505 HOVERGEN:HBG080833
OrthoDB:EOG45B1FW EMBL:AAMC01050884 EMBL:AAMC01050885 EMBL:BC080920
RefSeq:NP_001008038.1 UniGene:Str.66664 ProteinModelPortal:Q66JG8
Ensembl:ENSXETT00000012702 Ensembl:ENSXETT00000060222 GeneID:493400
KEGG:xtr:493400 Xenbase:XB-GENE-987580 InParanoid:Q66JG8
OMA:RKFRESD Uniprot:Q66JG8
Length = 358
Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 49/144 (34%), Positives = 70/144 (48%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E RI + + KG +E T AP +R K FG Y Y
Sbjct: 60 LFSPDECARIEAKIDEVVSRAEKGLYREHTVDRAP---LRNK----YFFGEGYTYGAQLQ 112
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++IRRLV+ V+P V +S ++N Y+ G CI H+
Sbjct: 113 RRGPGQERLYPKGEVDEIPAWVNELVIRRLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 171
Query: 267 DN-HDFVRPFCTVSFLSECNIVFG 289
D H F RP +VSF S+ + FG
Sbjct: 172 DPIHIFERPIVSVSFFSDSALCFG 195
>RGD|1309496 [details] [associations]
symbol:Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0001666 "response to hypoxia"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0006397 "mRNA processing" evidence=ISO;ISS] [GO:0006406 "mRNA
export from nucleus" evidence=ISO;ISS] [GO:0007283
"spermatogenesis" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016702 "oxidoreductase activity, acting on
single donors with incorporation of molecular oxygen, incorporation
of two atoms of oxygen" evidence=IEA] [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=ISO;ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0035515
"oxidative RNA demethylase activity" evidence=ISO;ISS] [GO:0035553
"oxidative single-stranded RNA demethylation" evidence=ISO;ISS]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR005123
RGD:1309496 GO:GO:0016706 Pfam:PF13532 CTD:54890
GeneTree:ENSGT00390000009298 KO:K10767 OMA:GAKRKYQ
OrthoDB:EOG45B1FW IPI:IPI00369534 RefSeq:NP_001178572.1
UniGene:Rn.8697 Ensembl:ENSRNOT00000034006 GeneID:303193
KEGG:rno:303193 UCSC:RGD:1309496 NextBio:650831 Uniprot:D3ZKD3
Length = 395
Score = 144 (55.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E +I + + KG E T AP +R K FG Y Y
Sbjct: 95 LFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 147
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 148 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 206
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
D H F RP +VSF S+ + FG K + E S+P+
Sbjct: 207 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 249
>UNIPROTKB|E1BH29 [details] [associations]
symbol:ALKBH5 "RNA demethylase ALKBH5" species:9913 "Bos
taurus" [GO:0007283 "spermatogenesis" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0035515 "oxidative RNA demethylase activity" evidence=ISS]
[GO:0016706 "oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=ISS] [GO:0035553 "oxidative single-stranded RNA
demethylation" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0001666 "response to hypoxia" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0016702 "oxidoreductase activity, acting on
single donors with incorporation of molecular oxygen, incorporation
of two atoms of oxygen" evidence=IEA] InterPro:IPR005123
GO:GO:0016706 Pfam:PF13532 EMBL:DAAA02048990 IPI:IPI00707099
RefSeq:NP_001192446.1 UniGene:Bt.6937 ProteinModelPortal:E1BH29
Ensembl:ENSBTAT00000034976 GeneID:533303 KEGG:bta:533303 CTD:54890
GeneTree:ENSGT00390000009298 KO:K10767 OMA:GAKRKYQ NextBio:20875992
Uniprot:E1BH29
Length = 394
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E +I + + KG E T AP +R K FG Y Y
Sbjct: 94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 146
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 147 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 205
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
D H F RP +VSF S+ + FG K + E S+P+
Sbjct: 206 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248
>UNIPROTKB|Q6P6C2 [details] [associations]
symbol:ALKBH5 "RNA demethylase ALKBH5" species:9606 "Homo
sapiens" [GO:0016702 "oxidoreductase activity, acting on single
donors with incorporation of molecular oxygen, incorporation of two
atoms of oxygen" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0035515 "oxidative RNA demethylase activity" evidence=IDA]
[GO:0035553 "oxidative single-stranded RNA demethylation"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0006397 "mRNA
processing" evidence=IMP] [GO:0001666 "response to hypoxia"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IDA] [GO:0007283 "spermatogenesis" evidence=ISS]
InterPro:IPR005123 GO:GO:0046872 GO:GO:0016706 GO:GO:0016702
Pfam:PF13532 CTD:54890 KO:K10767 eggNOG:NOG264303
HOGENOM:HOG000007505 HOVERGEN:HBG080833 EMBL:AK000315 EMBL:AK301107
EMBL:AC087164 EMBL:AC109515 EMBL:CH471196 EMBL:BC062339
IPI:IPI00413659 IPI:IPI00759562 RefSeq:NP_060228.3
UniGene:Hs.740458 ProteinModelPortal:Q6P6C2 IntAct:Q6P6C2
STRING:Q6P6C2 PhosphoSite:Q6P6C2 DMDM:74749138 PaxDb:Q6P6C2
PRIDE:Q6P6C2 Ensembl:ENST00000399138 GeneID:54890 KEGG:hsa:54890
UCSC:uc010cpw.3 GeneCards:GC17P018086 HGNC:HGNC:25996 HPA:HPA007196
MIM:613303 neXtProt:NX_Q6P6C2 PharmGKB:PA142671230
InParanoid:Q6P6C2 GenomeRNAi:54890 NextBio:57883
ArrayExpress:Q6P6C2 Bgee:Q6P6C2 CleanEx:HS_ALKBH5
Genevestigator:Q6P6C2 GermOnline:ENSG00000091542 Uniprot:Q6P6C2
Length = 394
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E +I + + KG E T AP +R K FG Y Y
Sbjct: 94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 146
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 147 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 205
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
D H F RP +VSF S+ + FG K + E S+P+
Sbjct: 206 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248
>MGI|MGI:2144489 [details] [associations]
symbol:Alkbh5 "alkB, alkylation repair homolog 5 (E. coli)"
species:10090 "Mus musculus" [GO:0001666 "response to hypoxia"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016702 "oxidoreductase activity,
acting on single donors with incorporation of molecular oxygen,
incorporation of two atoms of oxygen" evidence=IEA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=ISO] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0035515 "oxidative RNA demethylase activity"
evidence=ISO] [GO:0035553 "oxidative single-stranded RNA
demethylation" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR005123 MGI:MGI:2144489 GO:GO:0046872
GO:GO:0016706 GO:GO:0016702 Pfam:PF13532 CTD:54890
GeneTree:ENSGT00390000009298 KO:K10767 OMA:GAKRKYQ eggNOG:NOG264303
HOGENOM:HOG000007505 HOVERGEN:HBG080833 OrthoDB:EOG45B1FW
EMBL:AK053695 EMBL:AK053700 EMBL:AK162072 EMBL:AK163294
EMBL:AL596386 EMBL:BC052076 IPI:IPI00453512 RefSeq:NP_766531.2
UniGene:Mm.262056 ProteinModelPortal:Q3TSG4 PhosphoSite:Q3TSG4
PaxDb:Q3TSG4 PRIDE:Q3TSG4 Ensembl:ENSMUST00000044250 GeneID:268420
KEGG:mmu:268420 UCSC:uc007jgd.2 InParanoid:Q3TSG4 NextBio:392283
Bgee:Q3TSG4 CleanEx:MM_ALKBH5 Genevestigator:Q3TSG4
GermOnline:ENSMUSG00000042650 Uniprot:Q3TSG4
Length = 395
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E +I + + KG E T AP +R K FG Y Y
Sbjct: 95 LFSQDECSKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 147
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 148 KRGPGQERLYPPGDVDEIPDWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 206
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
D H F RP +VSF S+ + FG K + E S+P+
Sbjct: 207 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 249
>UNIPROTKB|E2RPR0 [details] [associations]
symbol:ALKBH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016706 "oxidoreductase activity, acting on
paired donors, with incorporation or reduction of molecular oxygen,
2-oxoglutarate as one donor, and incorporation of one atom each of
oxygen into both donors" evidence=IEA] InterPro:IPR005123
GO:GO:0016706 Pfam:PF13532 GeneTree:ENSGT00390000009298 OMA:GAKRKYQ
EMBL:AAEX03003715 Ensembl:ENSCAFT00000029091 NextBio:20894983
Uniprot:E2RPR0
Length = 434
Score = 143 (55.4 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 50/163 (30%), Positives = 76/163 (46%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E +I + + KG E T AP +R K FG Y Y
Sbjct: 94 LFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 146
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++I++LV+ V+P V +S ++N Y+ G CI H+
Sbjct: 147 KRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFV-NSAVINDYQPGGCIVSHV 205
Query: 267 DN-HDFVRPFCTVSFLSECNIVFGSNL--KVVGAGEFAGSIPI 306
D H F RP +VSF S+ + FG K + E S+P+
Sbjct: 206 DPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPV 248
>UNIPROTKB|Q6GPB5 [details] [associations]
symbol:alkbh5 "RNA demethylase ALKBH5" species:8355
"Xenopus laevis" [GO:0001666 "response to hypoxia" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0007283 "spermatogenesis" evidence=ISS] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0016706 "oxidoreductase activity, acting
on paired donors, with incorporation or reduction of molecular
oxygen, 2-oxoglutarate as one donor, and incorporation of one atom
each of oxygen into both donors" evidence=ISS] [GO:0035515
"oxidative RNA demethylase activity" evidence=ISS] [GO:0035553
"oxidative single-stranded RNA demethylation" evidence=ISS]
InterPro:IPR005123 GO:GO:0046872 GO:GO:0016706 GO:GO:0016702
Pfam:PF13532 CTD:54890 KO:K10767 HOVERGEN:HBG080833 EMBL:BC073226
RefSeq:NP_001085704.1 UniGene:Xl.3522 ProteinModelPortal:Q6GPB5
GeneID:444130 KEGG:xla:444130 Xenbase:XB-GENE-987585 Uniprot:Q6GPB5
Length = 360
Score = 141 (54.7 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 47/144 (32%), Positives = 69/144 (47%)
Query: 152 IFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFGCCYNYATDKN 210
+FS E I + + KG +E T AP +R K FG Y Y
Sbjct: 62 LFSPDECAAIESKIDEVVSRADKGLYQEHTVDRAP---LRNK----YFFGEGYTYGAQLQ 114
Query: 211 GNPPGILQNEP---VDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHI 266
PG + P VD +P + +++IRRLV+ ++P V +S ++N Y+ G CI H+
Sbjct: 115 RRGPGQERLYPKGEVDEIPGWVHELVIRRLVERRIIPEGFV-NSAVINDYQPGGCIVSHV 173
Query: 267 DN-HDFVRPFCTVSFLSECNIVFG 289
D H F RP +VSF S+ + FG
Sbjct: 174 DPIHIFERPIVSVSFFSDSALCFG 197
>ZFIN|ZDB-GENE-061013-602 [details] [associations]
symbol:alkbh5 "alkB, alkylation repair homolog 5
(E. coli)" species:7955 "Danio rerio" [GO:0016706 "oxidoreductase
activity, acting on paired donors, with incorporation or reduction
of molecular oxygen, 2-oxoglutarate as one donor, and incorporation
of one atom each of oxygen into both donors" evidence=IEA;ISS]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0035515 "oxidative RNA demethylase activity"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0007283 "spermatogenesis" evidence=ISS] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0001666 "response to hypoxia"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0035553 "oxidative single-stranded RNA demethylation"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016702 "oxidoreductase activity, acting on single donors with
incorporation of molecular oxygen, incorporation of two atoms of
oxygen" evidence=IEA] InterPro:IPR005123 ZFIN:ZDB-GENE-061013-602
GO:GO:0016706 Pfam:PF13532 CTD:54890 GeneTree:ENSGT00390000009298
KO:K10767 OMA:GAKRKYQ EMBL:AL928835 EMBL:BC124804 IPI:IPI00802177
RefSeq:NP_001070855.1 UniGene:Dr.81672 ProteinModelPortal:Q08BA6
STRING:Q08BA6 PRIDE:Q08BA6 Ensembl:ENSDART00000091683 GeneID:570158
KEGG:dre:570158 eggNOG:NOG264303 HOGENOM:HOG000007505
HOVERGEN:HBG080833 InParanoid:Q08BA6 OrthoDB:EOG45B1FW
NextBio:20890003 Bgee:Q08BA6 Uniprot:Q08BA6
Length = 352
Score = 139 (54.0 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 48/154 (31%), Positives = 72/154 (46%)
Query: 142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS-APKKWMRGKGRITIQFG 200
+ +G++ IF+ E RI + + KG +E T AP +R K FG
Sbjct: 53 VKSGIK-QASIFTLEECARIEAKIDEVVAKADKGLYREHTVDRAP---LRNK----YFFG 104
Query: 201 CCYNYATDKNGNPPG---ILQNEPVDPLPH-LFKVIIRRLVKWHVLPPTCVPDSCIVNIY 256
Y Y PG + VD +P + +++I RLV V+P V +S ++N Y
Sbjct: 105 EGYTYGAQLEKRGPGQERLYSKGEVDDIPDWVHELVIDRLVTHGVIPEGFV-NSAVINDY 163
Query: 257 EEGDCIPPHIDN-HDFVRPFCTVSFLSECNIVFG 289
+ G CI H+D H F RP +VSF S+ + FG
Sbjct: 164 QPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFG 197
>WB|WBGene00007581 [details] [associations]
symbol:alkb-8 species:6239 "Caenorhabditis elegans"
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016706
"oxidoreductase activity, acting on paired donors, with
incorporation or reduction of molecular oxygen, 2-oxoglutarate as
one donor, and incorporation of one atom each of oxygen into both
donors" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR005123 InterPro:IPR013216
Pfam:PF03171 Pfam:PF08241 PROSITE:PS51471 GO:GO:0005737
GO:GO:0016706 GO:GO:0008168 GO:GO:0032259 eggNOG:COG0500
GeneTree:ENSGT00530000063536 HOGENOM:HOG000007984 KO:K10770
OMA:PCNCSYP EMBL:Z37139 RefSeq:NP_497751.1
ProteinModelPortal:Q9U3P9 SMR:Q9U3P9 PaxDb:Q9U3P9
EnsemblMetazoa:C14B1.10.1 EnsemblMetazoa:C14B1.10.2 GeneID:175476
KEGG:cel:CELE_C14B1.10 UCSC:C14B1.10.2 CTD:175476 WormBase:C14B1.10
InParanoid:Q9U3P9 NextBio:888328 Uniprot:Q9U3P9
Length = 591
Score = 115 (45.5 bits), Expect = 0.00084, P = 0.00084
Identities = 32/103 (31%), Positives = 50/103 (48%)
Query: 192 KGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSC 251
K R + FG ++Y+T+ + + DP+P + +I RL+ + T PD
Sbjct: 170 KHRAVVHFGHVFDYSTNSAS------EWKEADPIPPVINSLIDRLISDKYI--TERPDQV 221
Query: 252 IVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVF--GSN 291
N+YE G IP H D H F P ++S LS+ + F G+N
Sbjct: 222 TANVYESGHGIPSHYDTHSAFDDPIVSISLLSDVVMEFKDGAN 264
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 311 290 0.00089 115 3 11 22 0.39 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 615 (65 KB)
Total size of DFA: 248 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.61u 0.15s 22.76t Elapsed: 00:00:01
Total cpu time: 22.61u 0.16s 22.77t Elapsed: 00:00:01
Start: Fri May 10 00:18:22 2013 End: Fri May 10 00:18:23 2013