BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021540
         (311 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
           RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
           Hypermodification, Northeast Structural Genomics
           Consortium Target Hr5601b
 pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
           RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
           Hypermodification, Northeast Structural Genomics
           Consortium Target Hr5601b
 pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
           RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
           Hypermodification, Northeast Structural Genomics
           Consortium Target Hr5601b
 pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
           RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
           Hypermodification, Northeast Structural Genomics
           Consortium Target Hr5601b
          Length = 345

 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 248 PDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSECNIVF 288
           PD   +N YE G  IP HID H  F     ++S  SE  + F
Sbjct: 197 PDQMTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDF 238


>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
           Pseudomonas Syringae
 pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
           Pseudomonas Syringae
 pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
           Pseudomonas Syringae
 pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
           Pseudomonas Syringae
          Length = 260

 Score = 31.6 bits (70), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 146 LELH-EGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYN 204
           + LH E + +A+E   + D VH  +++  KG  K   Y A K  +     +T+ F   + 
Sbjct: 136 INLHCEPLLTASE---VADIVHISDDVTRKGSSKHIAYCATKAGLES---LTLSFAARFA 189

Query: 205 YATDKNGNPPGILQNEPVD 223
                NG  P +L  +P D
Sbjct: 190 PLVKVNGIAPALLXFQPKD 208


>pdb|3THP|A Chain A, Crystal Structure And Rna Binding Properties Of The
           RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
           Hypermodification, Northeast Structural Genomics
           Consortium Target Hr5601b
          Length = 345

 Score = 31.2 bits (69), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 248 PDSCIVNIYEEGDCIPPHIDNHD-FVRPFCTVSFLSE 283
           PD   +N YE G  IP HID H  F     ++S  SE
Sbjct: 197 PDQXTINQYEPGQGIPAHIDTHSAFEDEIVSLSLGSE 233


>pdb|4HG6|B Chain B, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 707

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 35  GSEPDQEASASSG----LAFESHLAETPSPRMSWADMAQ 69
           G+ PDQ   AS+G    +   + L   PSPRM  ADMA+
Sbjct: 405 GNPPDQPCPASAGDLMQVLSSTDLEVPPSPRMQMADMAR 443


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,644,760
Number of Sequences: 62578
Number of extensions: 396352
Number of successful extensions: 783
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 6
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)