Query 021540
Match_columns 311
No_of_seqs 146 out of 751
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 7.6E-37 1.7E-41 293.2 11.9 196 105-311 76-272 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 99.9 3.1E-23 6.7E-28 181.8 9.6 153 145-311 1-155 (194)
3 KOG3200 Uncharacterized conser 99.9 1.7E-22 3.7E-27 179.6 10.2 133 135-296 3-135 (224)
4 PRK15401 alpha-ketoglutarate-d 99.9 1.9E-20 4.1E-25 171.3 16.7 149 141-311 15-174 (213)
5 TIGR00568 alkb DNA alkylation 99.8 3.1E-19 6.6E-24 158.1 14.5 144 150-311 2-153 (169)
6 COG3145 AlkB Alkylated DNA rep 99.7 1.3E-16 2.8E-21 144.3 12.1 134 141-293 12-152 (194)
7 KOG3959 2-Oxoglutarate- and ir 99.4 1.8E-13 3.9E-18 127.0 2.9 123 142-289 70-195 (306)
8 smart00702 P4Hc Prolyl 4-hydro 96.6 0.025 5.4E-07 49.2 10.9 102 144-270 1-104 (178)
9 PRK05467 Fe(II)-dependent oxyg 96.3 0.044 9.6E-07 51.1 10.6 25 146-170 2-26 (226)
10 KOG2731 DNA alkylation damage 93.6 0.09 2E-06 52.2 4.5 98 195-296 166-266 (378)
11 PLN00052 prolyl 4-hydroxylase; 90.3 2.9 6.3E-05 40.9 10.6 100 140-268 50-151 (310)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 83.1 0.38 8.1E-06 37.6 0.0 41 248-291 1-45 (98)
13 KOG1591 Prolyl 4-hydroxylase a 79.0 10 0.00022 36.9 8.2 105 138-269 91-196 (289)
14 PF13640 2OG-FeII_Oxy_3: 2OG-F 70.2 1.6 3.4E-05 34.2 0.2 20 251-270 1-20 (100)
15 KOG2731 DNA alkylation damage 64.9 2.5 5.3E-05 42.3 0.5 49 246-295 312-366 (378)
16 COG3128 PiuC Uncharacterized i 61.3 39 0.00084 31.6 7.4 18 252-269 85-102 (229)
17 TIGR02408 ectoine_ThpD ectoine 56.5 53 0.0012 31.0 7.9 27 144-170 28-54 (277)
18 PF05721 PhyH: Phytanoyl-CoA d 34.3 52 0.0011 27.7 3.6 25 144-168 4-28 (211)
19 PF08372 PRT_C: Plant phosphor 32.5 22 0.00048 31.7 1.1 24 55-78 23-46 (156)
20 PF09859 Oxygenase-NA: Oxygena 25.2 1.4E+02 0.003 27.2 4.8 53 225-284 43-98 (173)
21 COG3826 Uncharacterized protei 20.2 2.5E+02 0.0054 26.3 5.5 49 224-277 104-155 (236)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.6e-37 Score=293.24 Aligned_cols=196 Identities=42% Similarity=0.754 Sum_probs=184.3
Q ss_pred cCCCCCChhhhccee-eEeeeccccceeehhccCceeeccCceEEEcCcCCHHHHHHHHHHHHhhhhccccccccccccc
Q 021540 105 VQKPMLSREEREHMR-FMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYS 183 (311)
Q Consensus 105 ~~~~~~~~~~~~~~r-~~~v~~~k~F~~~e~v~g~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~ 183 (311)
.....+++++|+..| +..++..|+|.+.|+++++.+|++.|+.+++..+++.|+..|.+.|.++..+++.+.+.+.+++
T Consensus 76 ~~~~~~~e~~~~~~~~~~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~ 155 (323)
T KOG4176|consen 76 LFRELYSEESRLRYRTDANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFT 155 (323)
T ss_pred hhhhhchhhhhhhhhhhccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhcccccccce
Confidence 456677999999999 8999999999999999999999999999999999999999999999999998888888888887
Q ss_pred CCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCC
Q 021540 184 APKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIP 263 (311)
Q Consensus 184 ~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~ 263 (311)
. |++|++|+++|||++|.|.++.++. ..+++|||..++.+|+||+.|++||+ +||||+||+|+||+||+
T Consensus 156 ~---~~~gk~R~~iq~G~~f~y~~~~~d~------~~~~~piPs~~~~ii~rlv~~~~ip~--~pd~~~iN~Ye~G~~i~ 224 (323)
T KOG4176|consen 156 Y---QESGKHREVIQLGYPFDYRTNNVDE------SKPVDPIPSLFKSIIDRLVSWRVIPE--RPDQCTINFYEPGDGIP 224 (323)
T ss_pred e---eccccceeeeecCceeccCCCcccc------cCccCCCchHHHHHHHHhhhhccCCC--CCCeeEEEeeCCCCCCC
Confidence 6 9999999999999999999998873 33489999999999999999999998 89999999999999999
Q ss_pred CCCCCCCCCCCeEEEecCCceeEEecccceecCCCCCCcceeeeCCCC
Q 021540 264 PHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGEFAGSIPIALPVG 311 (311)
Q Consensus 264 PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~G~~~~~l~~g 311 (311)
||+|.++|++||++|||+|+|+|.||+.+..++.|+|.|++++||+.|
T Consensus 225 ph~~~~~F~~Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g 272 (323)
T KOG4176|consen 225 PHIDHSAFLDPISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYG 272 (323)
T ss_pred CCCChHHhcCceEEEEeecceeEEecccccccCccccccccccccccC
Confidence 999888899999999999999999999999999999999999999876
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.89 E-value=3.1e-23 Score=181.78 Aligned_cols=153 Identities=25% Similarity=0.456 Sum_probs=97.9
Q ss_pred ceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCCC
Q 021540 145 GLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVDP 224 (311)
Q Consensus 145 GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~P 224 (311)
||+|++||||++|+++|++.+.+...........++.+..++++.++ ......|..|.|...... ...+++|
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~y~y~~~~~~------~~~~~~~ 72 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGG--LSWVGDGPSYRYSGKRPV------RSKPWPP 72 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSE--EEEEECT--CCCTCC-EE------CCCEBSC
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceeccee--eEEECCCCCeEcCCcccc------CCCCCCC
Confidence 89999999999999999999996543221111222333322222211 111224566777654111 3567899
Q ss_pred CcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccceecCCCCCCc
Q 021540 225 LPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLKVVGAGEFAG 302 (311)
Q Consensus 225 IP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~G 302 (311)
+|++|..+++++.....+++...||+||||+|.+|++|++|+|... |+++|++||||++|+|.|++. ++...
T Consensus 73 ~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~------~~~~~ 146 (194)
T PF13532_consen 73 FPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNK------SDDDE 146 (194)
T ss_dssp CHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEEC------GGTS-
T ss_pred ccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeec------cCCCc
Confidence 9999999999998754434456899999999999999999999984 799999999999999999844 23447
Q ss_pred ceeeeCCCC
Q 021540 303 SIPIALPVG 311 (311)
Q Consensus 303 ~~~~~l~~g 311 (311)
.+.|.||.|
T Consensus 147 ~~~~~L~~g 155 (194)
T PF13532_consen 147 PIEVPLPPG 155 (194)
T ss_dssp EEEEEE-TT
T ss_pred cEEEEcCCC
Confidence 799999876
No 3
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=1.7e-22 Score=179.62 Aligned_cols=133 Identities=18% Similarity=0.233 Sum_probs=111.1
Q ss_pred ccCceeeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCC
Q 021540 135 IKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPP 214 (311)
Q Consensus 135 v~g~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p 214 (311)
+++..|...|-..|||+|||.+||+.++..|...+. .||...++||.|+||.-..-
T Consensus 3 ~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~---------------pkW~~L~NRRLqNyGGvvh~--------- 58 (224)
T KOG3200|consen 3 IKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQ---------------PKWRVLANRRLQNYGGVVHK--------- 58 (224)
T ss_pred cceeEecccceEEEcCCccChHHHHHHHHHHhcCCC---------------chhHHHHhhhhhhcCCcccc---------
Confidence 445566677888999999999999999999987653 24555589999999974431
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEeccccee
Q 021540 215 GILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKV 294 (311)
Q Consensus 215 ~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~ 294 (311)
++--.+.||+||+.+.+++-..|+|+. ..|+++||+|.||+||+||.|.+.|.+.|.+|||||+|+|.|......
T Consensus 59 ---~glipeelP~wLq~~v~kinnlglF~s--~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~ 133 (224)
T KOG3200|consen 59 ---TGLIPEELPPWLQYYVDKINNLGLFKS--PANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQ 133 (224)
T ss_pred ---CCcCccccCHHHHHHHHHhhcccccCC--CcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEeccccccc
Confidence 122238899999999999999999974 669999999999999999999999999999999999999999986555
Q ss_pred cC
Q 021540 295 VG 296 (311)
Q Consensus 295 ~~ 296 (311)
+.
T Consensus 134 e~ 135 (224)
T KOG3200|consen 134 EV 135 (224)
T ss_pred cc
Confidence 44
No 4
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.85 E-value=1.9e-20 Score=171.31 Aligned_cols=149 Identities=21% Similarity=0.313 Sum_probs=110.6
Q ss_pred eccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCC-CcccCCCCceEEecC--------CcccccCCCCC
Q 021540 141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP-KKWMRGKGRITIQFG--------CCYNYATDKNG 211 (311)
Q Consensus 141 nvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p-~kw~~g~~Rrv~hfG--------~~y~Y~~~~~~ 211 (311)
.+.+|..++++| +.+++++|++.++++....++-+ +..| ++.|+ -++.++| ..|+|+.....
T Consensus 15 ~~~~g~~~~~~~-~~~~~~~l~~~~~~~~~~~p~~~-----~~~~gg~~ms---v~mt~~G~~~W~~d~~~YrYs~~~~~ 85 (213)
T PRK15401 15 PLAPGAVLLRGF-ALAAAEALLAAIEAVAAQAPFRH-----MVTPGGYTMS---VAMTNCGALGWVTDRRGYRYSPIDPL 85 (213)
T ss_pred ecCCCcEEeCCC-CHHHHHHHHHHHHHHHhcCCccc-----eecCCCCcce---eEEeccccceEecCCCCcccCCcCCC
Confidence 478999999999 49999999999999766543222 2222 22332 2555554 36888865322
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC--CCCCCeEEEecCCceeEEec
Q 021540 212 NPPGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH--DFVRPFCTVSFLSECNIVFG 289 (311)
Q Consensus 212 ~~p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~--~F~~pIvsLSLGS~cvM~Fg 289 (311)
...+|++||++|..|++++.....++ .+.||+||||+|.+|++|++|+|.. .|+.||+|||||.+|+|.|+
T Consensus 86 ------~~~pwp~~P~~l~~L~~~~~~~~~~~-~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~ 158 (213)
T PRK15401 86 ------TGKPWPAMPASFLALAQRAAAAAGFP-GFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFG 158 (213)
T ss_pred ------CCCCCCCchHHHHHHHHHHHHHcCCC-CCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEec
Confidence 46889999999999999986543332 3689999999999999999999974 39999999999999999999
Q ss_pred ccceecCCCCCCcceeeeCCCC
Q 021540 290 SNLKVVGAGEFAGSIPIALPVG 311 (311)
Q Consensus 290 ~~~~~~~~g~~~G~~~~~l~~g 311 (311)
+....+ -..+|.|..|
T Consensus 159 ~~~~~~------~~~~l~L~~G 174 (213)
T PRK15401 159 GLKRSD------PLQRILLEHG 174 (213)
T ss_pred ccCCCC------ceEEEEeCCC
Confidence 752211 2356777655
No 5
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.81 E-value=3.1e-19 Score=158.06 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=104.2
Q ss_pred cCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCce------EEecCCcccccCCCCCCCCCCCCCCCCC
Q 021540 150 EGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRI------TIQFGCCYNYATDKNGNPPGILQNEPVD 223 (311)
Q Consensus 150 ~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rr------v~hfG~~y~Y~~~~~~~~p~~~~~~~v~ 223 (311)
.+|+...+|..|++.+.+.....+|.+. +....|.+... |. -.--|+.|+|+..... ...+++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~~w~~~----~~~~gk~~~~p-r~~~~~l~W~~~g~~Y~ys~~~~~------~~~~~p 70 (169)
T TIGR00568 2 KRYFAFNAQEQLIRDINDVASQDPFRQY----VTPGGYTMSVA-MTNLGKLGWTTHGQGYLYSPKDPQ------TNKPWP 70 (169)
T ss_pred CCccChHHHHHHHHHHHHHhhcCCCcCe----EecCCeEeeeh-hhhcccceEEcCCCcccCCCcccC------CCCCCC
Confidence 5789999999999999998776544432 22223333211 21 1222889999877653 356788
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccceecCCCCCC
Q 021540 224 PLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLKVVGAGEFA 301 (311)
Q Consensus 224 PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~~~ 301 (311)
+||++|..|.+++...-.++ ...||+||||+|.+|++|++|+|.+. ++.||+|||||++|+|.|++.....
T Consensus 71 ~~P~~L~~L~~~v~~~~g~~-~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~------ 143 (169)
T TIGR00568 71 AMPQDLGDLCERVATAAGFP-DFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRND------ 143 (169)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcCCC------
Confidence 99999999999986533222 35899999999999999999999754 7799999999999999998753211
Q ss_pred cceeeeCCCC
Q 021540 302 GSIPIALPVG 311 (311)
Q Consensus 302 G~~~~~l~~g 311 (311)
=+.+|.|..|
T Consensus 144 ~~~~l~L~sG 153 (169)
T TIGR00568 144 PPKRLRLHSG 153 (169)
T ss_pred ceEEEEeCCC
Confidence 1366666654
No 6
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.3e-16 Score=144.26 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=95.0
Q ss_pred eccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCc-----ccccCCCCCCCCC
Q 021540 141 NILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCC-----YNYATDKNGNPPG 215 (311)
Q Consensus 141 nvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~-----y~Y~~~~~~~~p~ 215 (311)
...+|+.++++|+ -.++.++++.|..+....++ ....+....++|+... ++||. |.|......
T Consensus 12 ~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~---~~~~~~~~g~~~sV~r----~~~W~~d~~gy~y~~~~p~---- 79 (194)
T COG3145 12 QLAPGAVILPGFL-LLTQGALVAALLFLLSQAPW---FRPRRTPYGKPMSVPR----LLGWVTDRRGYRYSLRSPL---- 79 (194)
T ss_pred cCCCCeEEEeccc-ccchHHHHHHHHHhcccCcc---cceeecCCCcEeeeee----ccceecccccccccccccC----
Confidence 4688999999999 77778888877776543321 1123334455554321 56654 444444332
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--CCCCeEEEecCCceeEEecccce
Q 021540 216 ILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--FVRPFCTVSFLSECNIVFGSNLK 293 (311)
Q Consensus 216 ~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F~~pIvsLSLGS~cvM~Fg~~~~ 293 (311)
+..++++||..+..++. +.+.. ...||+||||+|.||++|++|+|... ...||+|||||++|+|.|++...
T Consensus 80 --~~~p~p~l~~~~~~~~~---~~g~~--~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r 152 (194)
T COG3145 80 --TGKPWPPLLALFHDLFG---AAGYP--FEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR 152 (194)
T ss_pred --CCCCCCccHHHHHHHHH---HhcCC--CCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC
Confidence 45667888888887775 33332 35889999999999999999999975 44579999999999999998743
No 7
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.37 E-value=1.8e-13 Score=127.00 Aligned_cols=123 Identities=21% Similarity=0.372 Sum_probs=106.4
Q ss_pred ccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCC
Q 021540 142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEP 221 (311)
Q Consensus 142 vi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~ 221 (311)
.+|||.++++|+|.+|+.+|+..|+.++|+- +.++||+|.||...+|.+.+. +...
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~-----------------SQSGRRKQdyGPKvNFkk~Kl-------kt~~ 125 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQ-----------------SQSGRRKQDYGPKVNFKKKKL-------KTDT 125 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhh-----------------hcccccccccCCccchhhhhh-------ccCc
Confidence 4799999999999999999999999999842 226899999999999998876 3556
Q ss_pred CCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCC--CCCCCCCCCCCC-CCCCeEEEecCCceeEEec
Q 021540 222 VDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEE--GDCIPPHIDNHD-FVRPFCTVSFLSECNIVFG 289 (311)
Q Consensus 222 v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~P--G~GI~PHvD~~~-F~~pIvsLSLGS~cvM~Fg 289 (311)
...||.+..-|.+||....++.....++||-+. |.| |..|-||+|..| |+..++++.++++.++..-
T Consensus 126 F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLe-Yep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc 195 (306)
T KOG3959|consen 126 FVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLE-YEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLC 195 (306)
T ss_pred ccCCchHHHHHHHHhhccchhhccCcHHHcCcc-cccccCCccCccccchhhhhhheeehhhccHHHHHhh
Confidence 789999999999999887777555566999987 777 788999999999 9999999988888877766
No 8
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=96.65 E-value=0.025 Score=49.22 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=56.1
Q ss_pred CceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCCCCCCCC
Q 021540 144 AGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGILQNEPVD 223 (311)
Q Consensus 144 ~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~~~~~v~ 223 (311)
|++.++++|||++|.+.|++.+....+.. .. .. +.... .... .|.+... ......
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~---~~----~~-------~~~~~--~~~~--~~R~~~~-------~~l~~~ 55 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRG---EV----TR-------GDTNP--NHDS--KYRQSNG-------TWLELL 55 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccc---ee----ec-------CCCCc--cccC--CCEeecc-------eecCCC
Confidence 67899999999999999999997654311 11 00 00000 0000 1111110 000011
Q ss_pred CCcHHHHHHHHHHHhccCCC--CCCCCCeEEEeecCCCCCCCCCCCCCC
Q 021540 224 PLPHLFKVIIRRLVKWHVLP--PTCVPDSCIVNIYEEGDCIPPHIDNHD 270 (311)
Q Consensus 224 PIP~~L~~LidRLv~~~vip--~~~~PDqciIN~Y~PG~GI~PHvD~~~ 270 (311)
.-.+....|.+|+...-.++ ....-+.+.|..|.+|+...+|.|...
T Consensus 56 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~ 104 (178)
T smart00702 56 KGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFE 104 (178)
T ss_pred CCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCC
Confidence 01344555555554322222 023458899999999999999999964
No 9
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=96.26 E-value=0.044 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=21.7
Q ss_pred eEEEcCcCCHHHHHHHHHHHHhhhh
Q 021540 146 LELHEGIFSAAEQKRIVDFVHTLNE 170 (311)
Q Consensus 146 L~li~dFIT~~EE~~Ll~~I~el~~ 170 (311)
+.+++++||++|.++|++.+....|
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~ 26 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEW 26 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCC
Confidence 4679999999999999999987654
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=93.57 E-value=0.09 Score=52.23 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=65.2
Q ss_pred eEEecCCcccccCCCCCCCCCCCCCCCCCCCcHHHHHHHH-HHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCCC--C
Q 021540 195 ITIQFGCCYNYATDKNGNPPGILQNEPVDPLPHLFKVIIR-RLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHD--F 271 (311)
Q Consensus 195 rv~hfG~~y~Y~~~~~~~~p~~~~~~~v~PIP~~L~~Lid-RLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~~--F 271 (311)
|-+-.|..|++.+... + +.-......+|+++..+.+ +..+.--+.+...+.-+|+|+|.+++.++-|+|... .
T Consensus 166 Rw~T~G~~~dw~s~~~---~-~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~ 241 (378)
T KOG2731|consen 166 RWVTLGNQYDWSSKDI---F-IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDL 241 (378)
T ss_pred cccccccccCCccccc---c-ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhccc
Confidence 3444577777776551 1 1123345667777655554 332222222334556699999999999999999964 7
Q ss_pred CCCeEEEecCCceeEEecccceecC
Q 021540 272 VRPFCTVSFLSECNIVFGSNLKVVG 296 (311)
Q Consensus 272 ~~pIvsLSLGS~cvM~Fg~~~~~~~ 296 (311)
..|+++.|||-.|.+..|..-...+
T Consensus 242 ~~pf~s~s~g~~ai~lLg~m~l~e~ 266 (378)
T KOG2731|consen 242 SKPFYSPSLGQGAILLLGMMCLGEN 266 (378)
T ss_pred CCccccccccccceeeecccccCCC
Confidence 7889999999999999986544433
No 11
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=90.30 E-value=2.9 Score=40.87 Aligned_cols=100 Identities=20% Similarity=0.275 Sum_probs=58.8
Q ss_pred eeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCC--CcccCCCCceEEecCCcccccCCCCCCCCCCC
Q 021540 140 VNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAP--KKWMRGKGRITIQFGCCYNYATDKNGNPPGIL 217 (311)
Q Consensus 140 Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p--~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~ 217 (311)
+..-|=+.+|+||||.+|.+.|++....... ..++... .+-.. ...|+ ..|.-+.
T Consensus 50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~--------~S~v~~~~~g~~~~-s~~RT-S~~~~l~------------- 106 (310)
T PLN00052 50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQ--------RSMVADNKSGKSVM-SEVRT-SSGMFLD------------- 106 (310)
T ss_pred ecCCCCEEEECCcCCHHHHHHHHHhcccccc--------cceeecCCCCcccc-CCCEE-ecceeec-------------
Confidence 4456899999999999999999988754211 0011100 00000 01111 1111000
Q ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC
Q 021540 218 QNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN 268 (311)
Q Consensus 218 ~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~ 268 (311)
. .--+.+..|.+|+..+..+|... -+.+-|=.|.+|+...||.|.
T Consensus 107 -~----~~dpvv~~I~~Ria~~t~lp~~~-~E~lQVlrY~~Gq~Y~~H~D~ 151 (310)
T PLN00052 107 -K----RQDPVVSRIEERIAAWTFLPEEN-AENIQILRYEHGQKYEPHFDY 151 (310)
T ss_pred -C----CCCHHHHHHHHHHHHHhCCCccc-CcceEEEecCCCCCCCCCCCc
Confidence 0 00236788888988776665322 256777779999999999996
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=83.05 E-value=0.38 Score=37.65 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCeEEEeecC---CCCCCCCCCCCCCCCCCeEEEecC-CceeEEeccc
Q 021540 248 PDSCIVNIYE---EGDCIPPHIDNHDFVRPFCTVSFL-SECNIVFGSN 291 (311)
Q Consensus 248 PDqciIN~Y~---PG~GI~PHvD~~~F~~pIvsLSLG-S~cvM~Fg~~ 291 (311)
++++.||.|. .+.++++|.|.. ..+++|-+. ...-+.|...
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~ 45 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDD 45 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEET
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheecccc
Confidence 4789999999 788999999995 345555554 5555555543
No 13
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=79.05 E-value=10 Score=36.89 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=58.1
Q ss_pred ceeeccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEecCCcccccCCCCCCCCCCC
Q 021540 138 KIVNILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQFGCCYNYATDKNGNPPGIL 217 (311)
Q Consensus 138 ~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG~~y~Y~~~~~~~~p~~~ 217 (311)
..+..-|-+.+|.|||+.+|.+.|++....-... ..+..-+......+..+ .+.
T Consensus 91 E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~----------------------stv~~~~~~~~~~~~~~----R~S 144 (289)
T KOG1591|consen 91 EELSWDPRVVLYHDFLSDEECDHLISLAKPKLER----------------------STVVADKGTGHSTTSAV----RTS 144 (289)
T ss_pred hhcccCCceEeehhcCCHHHHHHHHHhhhhhhhc----------------------eeeeccCCcccccceee----Eec
Confidence 3445668899999999999999888776542211 11111110000000000 000
Q ss_pred CCCCCC-CCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC
Q 021540 218 QNEPVD-PLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH 269 (311)
Q Consensus 218 ~~~~v~-PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~ 269 (311)
.+.-+. .=.+.+..|-+|+...-.++.. .-+.+-|=-|..|+.=.||.|--
T Consensus 145 ~~t~l~~~~~~~~~~i~~ri~~~T~l~~e-~~E~lqVlnYg~Gg~Y~~H~D~~ 196 (289)
T KOG1591|consen 145 SGTFLPDGASPVVSRIEQRIADLTGLPVE-NGESLQVLNYGLGGHYEPHYDYF 196 (289)
T ss_pred ceeEecCCCCHHHHHHHHHHHhccCCCcc-cCccceEEEecCCcccccccccc
Confidence 000011 1244666677777776666542 23666666699999999998763
No 14
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=70.21 E-value=1.6 Score=34.15 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.1
Q ss_pred EEEeecCCCCCCCCCCCCCC
Q 021540 251 CIVNIYEEGDCIPPHIDNHD 270 (311)
Q Consensus 251 ciIN~Y~PG~GI~PHvD~~~ 270 (311)
|-||.|.+|+.+.||.|...
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~ 20 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY 20 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC
T ss_pred CEEEEECcCCEEeeeECCCC
Confidence 56899999999999999943
No 15
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=64.90 E-value=2.5 Score=42.35 Aligned_cols=49 Identities=29% Similarity=0.473 Sum_probs=40.7
Q ss_pred CCCCeEEEeecCCCCCCCCCCCCCC------CCCCeEEEecCCceeEEecccceec
Q 021540 246 CVPDSCIVNIYEEGDCIPPHIDNHD------FVRPFCTVSFLSECNIVFGSNLKVV 295 (311)
Q Consensus 246 ~~PDqciIN~Y~PG~GI~PHvD~~~------F~~pIvsLSLGS~cvM~Fg~~~~~~ 295 (311)
..||-|++|.|.+-..++.|+|... -+=||+++|.+. +.|.+|.....+
T Consensus 312 plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~d~~ 366 (378)
T KOG2731|consen 312 PLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQRDED 366 (378)
T ss_pred CCcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchhhhh
Confidence 3799999999999999999999853 345899999999 999888654433
No 16
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=61.31 E-value=39 Score=31.58 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=16.2
Q ss_pred EEeecCCCCCCCCCCCCC
Q 021540 252 IVNIYEEGDCIPPHIDNH 269 (311)
Q Consensus 252 iIN~Y~PG~GI~PHvD~~ 269 (311)
+-|.|..|...++|+|+.
T Consensus 85 ~Fn~Y~eg~~f~fHvDga 102 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGA 102 (229)
T ss_pred hhhhccCCCcccccccCc
Confidence 468899999999999994
No 17
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=56.51 E-value=53 Score=30.97 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=24.5
Q ss_pred CceEEEcCcCCHHHHHHHHHHHHhhhh
Q 021540 144 AGLELHEGIFSAAEQKRIVDFVHTLNE 170 (311)
Q Consensus 144 ~GL~li~dFIT~~EE~~Ll~~I~el~~ 170 (311)
.|..+++++|+++|.++|.+.++++..
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~ 54 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTR 54 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHh
Confidence 599999999999999999999988764
No 18
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=34.27 E-value=52 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.3
Q ss_pred CceEEEcCcCCHHHHHHHHHHHHhh
Q 021540 144 AGLELHEGIFSAAEQKRIVDFVHTL 168 (311)
Q Consensus 144 ~GL~li~dFIT~~EE~~Ll~~I~el 168 (311)
.|..+++++|++++.++|.+.+.++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 3899999999999999999999987
No 19
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=32.53 E-value=22 Score=31.67 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=18.8
Q ss_pred ccCCCCCCChhhhhhccchhhhhh
Q 021540 55 AETPSPRMSWADMAQEDELEEEGE 78 (311)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~ 78 (311)
......++|+||++..||+|||.+
T Consensus 23 p~~~d~~ls~~~~~~~deldEEfD 46 (156)
T PF08372_consen 23 PPHMDTKLSHADSAHPDELDEEFD 46 (156)
T ss_pred CCCCCccccccccCCcchhhhhhc
Confidence 335677999999999999887643
No 20
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=25.17 E-value=1.4e+02 Score=27.24 Aligned_cols=53 Identities=26% Similarity=0.257 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCCC--C-CCCCeEEEecCCce
Q 021540 225 LPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNH--D-FVRPFCTVSFLSEC 284 (311)
Q Consensus 225 IP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~~--~-F~~pIvsLSLGS~c 284 (311)
.|+.+...+++..+.|- .+|..+ |..|.+|+..+.|+|.- . | |+=.+=|+|+-
T Consensus 43 yP~~~~~fl~~ch~aGQ----~rptpl-llrY~~gdyn~LHqdlyGe~vF--PlQvv~lLs~P 98 (173)
T PF09859_consen 43 YPATLAEFLARCHAAGQ----TRPTPL-LLRYGPGDYNCLHQDLYGEHVF--PLQVVILLSEP 98 (173)
T ss_pred CCccHHHHHHHHHhccC----CCCchh-hheeCCCCccccccCCCCCccc--CeEEEEEcCCC
Confidence 35556666666655553 355444 55599999999999983 2 4 44444455553
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=2.5e+02 Score=26.33 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=33.3
Q ss_pred CCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC---CCCCCCeEE
Q 021540 224 PLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN---HDFVRPFCT 277 (311)
Q Consensus 224 PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~---~~F~~pIvs 277 (311)
+.|+.+...+++.-+.|- .+|.-+++. |.||+.=..|+|. +.|-=-|++
T Consensus 104 r~P~tlad~L~~CHaAGQ----~RpTpLlLq-YgpgD~NcLHQDLYGelvFPLQvai 155 (236)
T COG3826 104 RYPATLADFLARCHAAGQ----VRPTPLLLQ-YGPGDYNCLHQDLYGELVFPLQVAI 155 (236)
T ss_pred CCchhHHHHHHHHHhccC----ccCCceeEE-ecCCccchhhhhhhhceeeeeeEEE
Confidence 346666666666656654 366777776 9999999999998 336444444
Done!