Query 021541
Match_columns 311
No_of_seqs 146 out of 751
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 05:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fdia1 b.82.2.10 (A:15-214) A 99.9 6.6E-23 4.8E-27 181.6 12.7 149 142-311 1-159 (200)
2 d2iuwa1 b.82.2.10 (A:70-279) A 99.8 1.9E-19 1.4E-23 157.1 10.4 149 142-311 17-173 (210)
3 d2a1xa1 b.82.2.9 (A:43-338) Ph 20.8 36 0.0026 27.5 3.8 42 106-170 7-48 (296)
4 d1v70a_ b.82.1.9 (A:) Hypothet 17.7 37 0.0027 23.3 2.7 42 255-299 34-75 (105)
5 d1sfna_ b.82.1.11 (A:) Hypothe 17.0 63 0.0046 26.4 4.5 47 250-299 166-212 (245)
6 d2uuyb1 g.8.1.3 (B:24-74) Tryp 15.3 23 0.0017 22.7 0.8 8 33-40 5-12 (51)
7 d1yhfa1 b.82.1.9 (A:1-112) Hyp 14.4 41 0.003 23.9 2.2 42 254-299 42-83 (112)
8 d2b8ma1 b.82.1.18 (A:1-108) Hy 10.5 1.1E+02 0.0078 21.6 3.6 46 250-299 27-73 (108)
9 d1fu9a_ g.37.1.2 (A:) U-shaped 9.4 37 0.0027 20.8 0.3 9 2-10 8-16 (36)
10 d2fcta1 b.82.2.9 (A:3-310) Syr 9.1 99 0.0072 25.0 3.2 25 144-168 16-40 (308)
No 1
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
Probab=99.88 E-value=6.6e-23 Score=181.60 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=109.9
Q ss_pred ccCceEEEcCcCCHHHHHHHHHHHHhhhhcccccccccccccCCCcccCCCCceEEe---cCC-----cccccCCCCCCC
Q 021541 142 ILAGLELHEGIFSAAEQKRIVDFVHTLNEMGTKGELKEKTYSAPKKWMRGKGRITIQ---FGC-----CYNYATDKNGNP 213 (311)
Q Consensus 142 vi~GL~li~dFIT~~EE~~Ll~~I~el~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~h---fG~-----~y~Y~~~~~~~~ 213 (311)
+.||++++++|++ +||++||+.|+++....++-.. .+...+.|+. ++.+ ||| .|.|......
T Consensus 1 lapG~v~l~~f~~-~~~~~ll~~~~~~~~~~p~r~~----~~p~g~~msv---~~~~~g~~gW~~d~~~Yry~~~~~~-- 70 (200)
T d2fdia1 1 LAAGAVILRRFAF-NAAEQLIRDINDVASQSPFRQM----VTPGGYTMSV---AMTNCGHLGWTTHRQGYLYSPIDPQ-- 70 (200)
T ss_dssp CCTTEEEETTTTT-TTHHHHHHHHHHHHHHSCCBCC----BCTTSCBCSS---EEEEESSBEEEEETTEEEEESBCTT--
T ss_pred CCCCEEEECCcCC-HHHHHHHHHHHHHHhhCCceee----ecCCCCcceE---EEEeccccccccCCcCcccccccCC--
Confidence 4689999999986 4677899999987664332111 1112344432 3333 333 5788766543
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeecCCCCCCCCCCCC--CCCCCCeEEEecCCceeEEeccc
Q 021541 214 PGILQNEPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDN--HDFVRPFCTVSFLSECNIVFGSN 291 (311)
Q Consensus 214 p~~~~~~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y~PG~GI~PHvD~--~~F~~pIvsLSLGS~cvM~Fg~~ 291 (311)
...+|++||++|..|+++++....++ ...||+||||+|.+|++|++|.|. +.|+.||+|||||++|+|.|+..
T Consensus 71 ----~~~~wp~iP~~l~~L~~~~~~~~~~~-~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~pIvslSLG~~~~f~f~~~ 145 (200)
T d2fdia1 71 ----TNKPWPAMPQSFHNLCQRAATAAGYP-DFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGL 145 (200)
T ss_dssp ----TSSBCCCCCHHHHHHHHHHHHHHTCT-TCCCSEEEEEEECTTCCEEEECCCCSSCTTSCEEEEEEESCEEEEECCS
T ss_pred ----CCCCCCCccHHHHHHHHHHHHHcCCC-ccCCCeeEEEEecCCCCccccccCCccccCCCceEEEEeCCeeEEeccc
Confidence 46789999999999999998766554 357999999999999999999886 45999999999999999999875
Q ss_pred ceecCCCCCCcceeeeCCCC
Q 021541 292 LKVVGAGEFAGSIPIALPVG 311 (311)
Q Consensus 292 ~~~~~~g~~~G~~~~~l~~g 311 (311)
.. .....+|.|+.|
T Consensus 146 ~~------~~~~~~~~L~~G 159 (200)
T d2fdia1 146 KR------NDPLKRLLLEHG 159 (200)
T ss_dssp ST------TSCCEEEEECTT
T ss_pred cc------CCceEEEEcCCC
Confidence 22 224577777765
No 2
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=1.9e-19 Score=157.07 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=97.5
Q ss_pred ccCceEEEcCcCCHHHHHHHHHHHHhh-hhcccccccccccccCCCcccCCCCceEEecC-CcccccCCCCCCCCCCCCC
Q 021541 142 ILAGLELHEGIFSAAEQKRIVDFVHTL-NEMGTKGELKEKTYSAPKKWMRGKGRITIQFG-CCYNYATDKNGNPPGILQN 219 (311)
Q Consensus 142 vi~GL~li~dFIT~~EE~~Ll~~I~el-~~~~~~g~L~~~~~~~p~kw~~g~~Rrv~hfG-~~y~Y~~~~~~~~p~~~~~ 219 (311)
.++||.|++||||++|++.|++.|.+. .|.. . .+....++.. ..|.+..|| ..|.|.... .
T Consensus 17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~----~---~~~~~g~~~~-~pR~~~~~~d~~y~y~~~~---------~ 79 (210)
T d2iuwa1 17 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQ----R---TGIREDITYQ-QPRLTAWYGELPYTYSRIT---------M 79 (210)
T ss_dssp SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBC----C---EEESSSCEEE-CSSEEEEEECCCTTSCHHH---------H
T ss_pred CcceEEEECCcCCHHHHHHHHHHHHhhCCccc----c---ceeccCcccc-eeeeeEEecCcCccccccc---------c
Confidence 466899999999999999999999764 3321 1 1111111111 234443333 344444321 2
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCCCCCCCeEEEeec-CCCCCCCCCCCCCC-C--CCCeEEEecCCceeEEecccceec
Q 021541 220 EPVDPLPHLFKVIIRRLVKWHVLPPTCVPDSCIVNIY-EEGDCIPPHIDNHD-F--VRPFCTVSFLSECNIVFGSNLKVV 295 (311)
Q Consensus 220 ~~v~PIP~~L~~LidRLv~~~vip~~~~PDqciIN~Y-~PG~GI~PHvD~~~-F--~~pIvsLSLGS~cvM~Fg~~~~~~ 295 (311)
.+..++|++|..|.+++.+.... .+++|+||.| .+|++|++|.|... | +.+|++||||++|+|+|++.....
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~----~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~ 155 (210)
T d2iuwa1 80 EPNPHWHPVLRTLKNRIEENTGH----TFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPE 155 (210)
T ss_dssp CCBSSCCHHHHHHHHHHHHHHSC----CCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC--
T ss_pred ccCCCCcHHHHHHHHhhhhhcCc----cchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccc
Confidence 33577899999999998765432 5677777777 55689999999975 5 567999999999999998765444
Q ss_pred CCCCCC--cceeeeCCCC
Q 021541 296 GAGEFA--GSIPIALPVG 311 (311)
Q Consensus 296 ~~g~~~--G~~~~~l~~g 311 (311)
..+... -.++|+|+.|
T Consensus 156 ~~~~~~~~~~~~i~L~~g 173 (210)
T d2iuwa1 156 ENGDYTYVERVKIPLDHG 173 (210)
T ss_dssp ------CCCEEEEEECTT
T ss_pred cCCccCCCceEEEEcCCC
Confidence 333333 3588999876
No 3
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.85 E-value=36 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=32.5
Q ss_pred CCCCCChhhhcceeeEeeeccccceeehhccCceeeccCceEEEcCcCCHHHHHHHHHHHHhhhh
Q 021541 106 QKPMLSREEREHMRFMHVRRKKDFICLEKIKGKIVNILAGLELHEGIFSAAEQKRIVDFVHTLNE 170 (311)
Q Consensus 106 ~~~~~~~~~~~~~r~~~v~~~k~F~~~e~v~g~~Vnvi~GL~li~dFIT~~EE~~Ll~~I~el~~ 170 (311)
+...||++|++.++ -.|..+++++|+.++.++|.+.+.++..
T Consensus 7 ~~~~Lt~eq~~~f~-----------------------~~Gyvvi~~~l~~~~~~~l~~~~~~~~~ 48 (296)
T d2a1xa1 7 DNNVLTLEQRKFYE-----------------------ENGFLVIKNLVPDADIQRFRNEFEKICR 48 (296)
T ss_dssp CC--CCSTHHHHHH-----------------------HHSEEEETTCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHH-----------------------HCCEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 56678888887541 2499999999999999999999987654
No 4
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}
Probab=17.70 E-value=37 Score=23.32 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=27.5
Q ss_pred ecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEecccceecCCCC
Q 021541 255 IYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299 (311)
Q Consensus 255 ~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~ 299 (311)
.+.||+.+++|.-... + -++.| |-..+.+.++.......+|+
T Consensus 34 ~~~PG~~~~~H~H~~~-~-e~~~v-l~G~~~~~~~~~~~~l~~Gd 75 (105)
T d1v70a_ 34 ALLPGQAQKVHVHEGS-D-KVYYA-LEGEVVVRVGEEEALLAPGM 75 (105)
T ss_dssp EECTTCEEEEECCSSC-E-EEEEE-EESCEEEEETTEEEEECTTC
T ss_pred EECCCCCCcceECCCC-e-EEEEE-EeeEEEEEEeeeEEEecceE
Confidence 3689999999953321 1 23333 56778888887777766655
No 5
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}
Probab=17.02 E-value=63 Score=26.39 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=33.0
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEecccceecCCCC
Q 021541 250 SCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299 (311)
Q Consensus 250 qciIN~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~ 299 (311)
++.|-.++||+.+++|. .|..+.-++.| ....++..+.......+|+
T Consensus 166 ~~~~~~~~PG~~~~~~~-~h~~ee~~~vl--~G~~~~~i~~~~~~v~~GD 212 (245)
T d1sfna_ 166 MVSTMSFAPGASLPYAE-VHYMEHGLLML--EGEGLYKLEENYYPVTAGD 212 (245)
T ss_dssp EEEEEEECTTCBCSSCB-CCSSCEEEEEE--ECEEEEEETTEEEEEETTC
T ss_pred EEEEEEEccCceeecee-cCCceEEEEEe--CCEEEEEECCEEEEecCCC
Confidence 34455699999999984 33445555554 5888888888777777766
No 6
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]}
Probab=15.30 E-value=23 Score=22.71 Aligned_cols=8 Identities=50% Similarity=0.492 Sum_probs=5.7
Q ss_pred CCCCCCCc
Q 021541 33 NGGSEPDQ 40 (311)
Q Consensus 33 ~~~~~~~~ 40 (311)
-||||||.
T Consensus 5 igwsepvk 12 (51)
T d2uuyb1 5 IGWSEPVK 12 (51)
T ss_dssp TTCCCCCC
T ss_pred ccccchhh
Confidence 36888875
No 7
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}
Probab=14.44 E-value=41 Score=23.94 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=28.2
Q ss_pred eecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEecccceecCCCC
Q 021541 254 NIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKVVGAGE 299 (311)
Q Consensus 254 N~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~~~~~~~g~ 299 (311)
-.+.||+.+++|. |.++. ++.| |-..+.+..+.......+|+
T Consensus 42 ~~~~~G~~~~~H~--h~~~~-~~~v-l~G~~~~~~~~~~~~l~~Gd 83 (112)
T d1yhfa1 42 FSLDKGQEIGRHS--SPGDA-MVTI-LSGLAEITIDQETYRVAEGQ 83 (112)
T ss_dssp EEECTTCEEEEEC--CSSEE-EEEE-EESEEEEEETTEEEEEETTC
T ss_pred EEECCCCCcceEE--CCCCE-EEEE-EeCEEEEEEccEEEEecCCE
Confidence 3468999999995 44444 3333 56788888887666666654
No 8
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.50 E-value=1.1e+02 Score=21.55 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=28.7
Q ss_pred eEEEeecCCCCCCCCCCCCCCCCCCeEEEecCCceeEEeccc-ceecCCCC
Q 021541 250 SCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSN-LKVVGAGE 299 (311)
Q Consensus 250 qciIN~Y~PG~GI~PHvD~~~F~~pIvsLSLGS~cvM~Fg~~-~~~~~~g~ 299 (311)
++..-...||+.+++|.- ..+.-++ | |-....|..+.. ....++|+
T Consensus 27 ~v~~~~l~pG~~~p~H~H--~~~e~~~-V-l~G~~~~~v~~~e~~~v~~Gd 73 (108)
T d2b8ma1 27 QINHIVLPRGEQMPKHYS--NSYVHLI-I-IKGEMTLTLEDQEPHNYKEGN 73 (108)
T ss_dssp EEEEEEEETTCBCCCEEC--SSCEEEE-E-EESEEEEEETTSCCEEEETTC
T ss_pred EEEEEEECCCCcChhhcc--cccEEEE-E-EeeeEEEEEecccEEEeecce
Confidence 455555789999999974 3443333 3 567778877653 33455554
No 9
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.36 E-value=37 Score=20.78 Aligned_cols=9 Identities=33% Similarity=1.036 Sum_probs=6.2
Q ss_pred CCCCCCcCC
Q 021541 2 NDNCDNCDT 10 (311)
Q Consensus 2 ~~~~~~~~~ 10 (311)
.-+|.+||-
T Consensus 8 ~rYC~~CDI 16 (36)
T d1fu9a_ 8 KKYCSTCDI 16 (36)
T ss_dssp CSEETTTTE
T ss_pred hhHHhhCCc
Confidence 457888873
No 10
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=9.14 E-value=99 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=21.4
Q ss_pred CceEEEcCcCCHHHHHHHHHHHHhh
Q 021541 144 AGLELHEGIFSAAEQKRIVDFVHTL 168 (311)
Q Consensus 144 ~GL~li~dFIT~~EE~~Ll~~I~el 168 (311)
.|..+++++||++|..+|.+.+...
T Consensus 16 ~Gyl~i~~~~s~~ei~~i~~~~~~~ 40 (308)
T d2fcta1 16 NGFIGPFDAYSPEEMKETWKRTRLR 40 (308)
T ss_dssp HSEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEECcCccCHHHHHHHHHHHHHH
Confidence 3888999999999999998887654
Done!