Query 021542
Match_columns 311
No_of_seqs 131 out of 1309
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.5E-57 7.6E-62 419.1 25.3 253 36-311 1-265 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 6.7E-56 1.5E-60 404.7 23.1 262 32-311 8-281 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 6.5E-53 1.4E-57 396.4 25.9 259 35-311 12-288 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 9.9E-53 2.2E-57 390.9 25.7 256 38-311 1-272 (317)
5 COG0656 ARA1 Aldo/keto reducta 100.0 4.5E-53 9.8E-58 379.3 19.4 218 35-311 2-222 (280)
6 PRK10625 tas putative aldo-ket 100.0 3.3E-52 7.1E-57 391.8 25.8 256 36-311 1-295 (346)
7 PLN02587 L-galactose dehydroge 100.0 1.2E-50 2.5E-55 376.6 23.7 246 38-311 1-252 (314)
8 KOG1577 Aldo/keto reductase fa 100.0 1.3E-48 2.9E-53 350.7 17.8 219 38-311 6-243 (300)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 1.7E-47 3.6E-52 350.1 24.1 238 38-311 1-243 (285)
10 PRK10376 putative oxidoreducta 100.0 4.7E-46 1E-50 341.9 22.1 222 39-311 10-244 (290)
11 PRK14863 bifunctional regulato 100.0 3.1E-46 6.6E-51 343.2 20.6 234 45-311 2-238 (292)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.9E-46 1.3E-50 337.5 21.7 206 46-311 1-210 (267)
13 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.1E-46 6.8E-51 341.4 19.7 234 50-311 1-239 (283)
14 COG4989 Predicted oxidoreducta 100.0 8.2E-47 1.8E-51 326.3 14.7 237 36-311 1-249 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-44 2.4E-49 330.4 20.8 213 38-311 6-220 (275)
16 KOG1576 Predicted oxidoreducta 100.0 1.1E-42 2.4E-47 302.9 15.9 246 33-311 19-277 (342)
17 COG1453 Predicted oxidoreducta 100.0 6.9E-40 1.5E-44 297.7 17.5 229 36-311 1-238 (391)
18 KOG3023 Glutamate-cysteine lig 98.2 3.1E-06 6.7E-11 73.9 6.0 139 109-254 52-228 (285)
19 PRK08392 hypothetical protein; 92.9 5.1 0.00011 35.0 14.2 187 75-307 14-209 (215)
20 PRK00164 moaA molybdenum cofac 91.7 7.6 0.00016 36.2 14.7 160 70-250 47-227 (331)
21 PRK13361 molybdenum cofactor b 91.4 9.8 0.00021 35.5 15.0 132 71-221 44-188 (329)
22 cd03319 L-Ala-DL-Glu_epimerase 91.2 4.7 0.0001 37.3 12.7 156 74-258 135-291 (316)
23 PRK13796 GTPase YqeH; Provisio 91.0 4.6 0.0001 38.4 12.6 144 49-209 34-180 (365)
24 cd03315 MLE_like Muconate lact 88.7 11 0.00024 33.9 12.6 156 75-258 87-243 (265)
25 TIGR02666 moaA molybdenum cofa 87.9 21 0.00046 33.2 14.4 132 71-221 42-187 (334)
26 PRK07945 hypothetical protein; 87.7 25 0.00053 33.1 16.5 162 75-250 111-288 (335)
27 PRK09856 fructoselysine 3-epim 87.6 4.7 0.0001 36.2 9.6 52 237-304 94-145 (275)
28 PRK08609 hypothetical protein; 87.4 19 0.00041 36.5 14.5 161 77-250 351-522 (570)
29 cd03316 MR_like Mandelate race 86.9 17 0.00036 34.2 13.2 159 74-254 140-299 (357)
30 PRK07535 methyltetrahydrofolat 84.2 21 0.00045 32.3 11.8 138 142-309 22-159 (261)
31 cd00423 Pterin_binding Pterin 84.2 29 0.00064 31.1 12.8 144 142-309 21-171 (258)
32 PF07021 MetW: Methionine bios 83.9 4.9 0.00011 34.6 7.2 153 79-259 5-172 (193)
33 KOG0023 Alcohol dehydrogenase, 83.2 2.8 6.1E-05 39.0 5.7 154 31-249 169-324 (360)
34 PRK13209 L-xylulose 5-phosphat 83.0 13 0.00029 33.5 10.3 51 237-303 103-153 (283)
35 cd04728 ThiG Thiazole synthase 82.9 35 0.00076 30.6 15.0 105 140-251 71-180 (248)
36 TIGR03597 GTPase_YqeH ribosome 82.0 31 0.00067 32.7 12.6 144 49-209 28-174 (360)
37 cd00740 MeTr MeTr subgroup of 81.9 33 0.00072 30.8 12.2 108 142-258 23-131 (252)
38 COG1748 LYS9 Saccharopine dehy 81.6 7.7 0.00017 37.2 8.3 80 75-173 79-158 (389)
39 PRK05588 histidinol-phosphatas 81.4 39 0.00084 30.1 16.3 170 75-257 16-220 (255)
40 TIGR01928 menC_lowGC/arch o-su 81.0 45 0.00099 31.0 13.2 152 75-258 134-286 (324)
41 cd00739 DHPS DHPS subgroup of 80.1 45 0.00098 30.1 14.1 143 142-309 21-171 (257)
42 PRK13210 putative L-xylulose 5 79.3 20 0.00044 32.2 10.1 51 237-303 98-148 (284)
43 cd01965 Nitrogenase_MoFe_beta_ 78.0 27 0.00059 33.8 11.1 106 110-222 66-188 (428)
44 TIGR02668 moaA_archaeal probab 77.7 56 0.0012 29.8 14.0 130 71-220 39-181 (302)
45 COG4464 CapC Capsular polysacc 77.6 37 0.0008 29.9 10.3 32 71-102 16-47 (254)
46 PLN02951 Molybderin biosynthes 77.6 67 0.0015 30.6 14.9 135 71-230 89-240 (373)
47 cd01973 Nitrogenase_VFe_beta_l 77.4 67 0.0015 31.5 13.6 115 94-221 64-193 (454)
48 PRK06740 histidinol-phosphatas 77.3 31 0.00067 32.4 10.8 101 149-251 156-289 (331)
49 PRK09058 coproporphyrinogen II 76.8 44 0.00094 32.7 12.2 105 141-262 226-335 (449)
50 TIGR02370 pyl_corrinoid methyl 76.5 11 0.00024 32.5 7.1 150 72-247 9-164 (197)
51 cd03325 D-galactonate_dehydrat 76.1 68 0.0015 30.2 13.0 158 75-253 125-285 (352)
52 TIGR01496 DHPS dihydropteroate 75.2 63 0.0014 29.1 13.6 143 142-309 20-169 (257)
53 cd03174 DRE_TIM_metallolyase D 74.4 15 0.00033 32.6 7.8 105 142-253 16-135 (265)
54 COG1149 MinD superfamily P-loo 74.4 7.2 0.00016 35.5 5.4 93 154-257 155-250 (284)
55 cd06543 GH18_PF-ChiA-like PF-C 74.4 52 0.0011 30.3 11.3 190 45-258 67-265 (294)
56 PRK00912 ribonuclease P protei 74.0 60 0.0013 28.6 11.4 145 75-251 16-172 (237)
57 COG0159 TrpA Tryptophan syntha 73.7 44 0.00096 30.3 10.3 124 145-304 2-150 (265)
58 PF00682 HMGL-like: HMGL-like 73.3 53 0.0011 28.8 10.8 128 72-217 11-151 (237)
59 PRK14017 galactonate dehydrata 72.8 68 0.0015 30.5 12.2 84 163-254 203-287 (382)
60 PRK00208 thiG thiazole synthas 72.8 72 0.0016 28.7 15.1 106 140-252 71-181 (250)
61 TIGR03822 AblA_like_2 lysine-2 72.8 82 0.0018 29.3 15.9 136 72-220 119-262 (321)
62 PF05690 ThiG: Thiazole biosyn 72.5 14 0.0003 33.0 6.6 169 49-254 9-183 (247)
63 COG2896 MoaA Molybdenum cofact 72.2 71 0.0015 29.9 11.5 128 71-221 42-185 (322)
64 cd01968 Nitrogenase_NifE_I Nit 72.0 89 0.0019 30.0 12.9 105 110-221 71-189 (410)
65 cd03322 rpsA The starvation se 72.0 90 0.002 29.5 13.5 145 75-254 128-273 (361)
66 cd03321 mandelate_racemase Man 71.9 45 0.00098 31.4 10.6 152 75-253 143-295 (355)
67 PF01261 AP_endonuc_2: Xylose 71.8 12 0.00026 31.5 6.2 88 203-304 27-128 (213)
68 PRK04452 acetyl-CoA decarbonyl 71.7 58 0.0013 30.4 10.9 95 154-256 84-185 (319)
69 TIGR00735 hisF imidazoleglycer 71.3 70 0.0015 28.6 11.3 88 154-249 163-253 (254)
70 cd03318 MLE Muconate Lactonizi 71.1 94 0.002 29.3 13.1 85 163-255 214-299 (365)
71 PRK07328 histidinol-phosphatas 70.7 81 0.0017 28.4 15.2 168 75-250 18-225 (269)
72 cd01974 Nitrogenase_MoFe_beta 70.7 50 0.0011 32.1 10.9 108 110-220 70-191 (435)
73 cd03327 MR_like_2 Mandelate ra 70.6 79 0.0017 29.6 11.9 158 74-253 121-280 (341)
74 TIGR01862 N2-ase-Ialpha nitrog 70.5 74 0.0016 31.1 12.0 105 110-221 102-222 (443)
75 cd03328 MR_like_3 Mandelate ra 69.7 81 0.0018 29.7 11.8 152 74-253 139-293 (352)
76 TIGR03822 AblA_like_2 lysine-2 68.6 78 0.0017 29.4 11.3 96 163-259 137-240 (321)
77 CHL00076 chlB photochlorophyll 68.5 1.2E+02 0.0027 30.2 13.3 105 110-221 70-198 (513)
78 TIGR02932 vnfK_nitrog V-contai 68.3 1.1E+02 0.0024 30.1 12.7 117 93-222 66-198 (457)
79 PRK07329 hypothetical protein; 68.2 88 0.0019 27.8 13.3 107 149-257 83-219 (246)
80 cd03329 MR_like_4 Mandelate ra 68.1 1.1E+02 0.0024 28.9 13.5 155 73-253 143-299 (368)
81 PRK02910 light-independent pro 68.0 1.2E+02 0.0025 30.4 13.0 105 110-222 70-194 (519)
82 cd03323 D-glucarate_dehydratas 67.6 1.1E+02 0.0023 29.4 12.3 82 164-255 239-321 (395)
83 TIGR00542 hxl6Piso_put hexulos 67.5 65 0.0014 28.9 10.4 52 237-304 98-149 (279)
84 cd02070 corrinoid_protein_B12- 67.4 42 0.00092 28.8 8.7 22 72-93 8-29 (201)
85 TIGR00381 cdhD CO dehydrogenas 67.2 95 0.0021 29.8 11.4 92 162-260 153-254 (389)
86 PRK14461 ribosomal RNA large s 65.5 60 0.0013 31.0 9.8 92 166-257 232-352 (371)
87 PRK05985 cytosine deaminase; P 65.3 1.3E+02 0.0027 28.6 12.4 171 75-258 98-277 (391)
88 cd00408 DHDPS-like Dihydrodipi 65.3 1.1E+02 0.0023 27.7 13.6 30 70-99 13-42 (281)
89 cd01981 Pchlide_reductase_B Pc 64.4 1.3E+02 0.0027 29.2 12.3 107 110-222 70-198 (430)
90 PRK15408 autoinducer 2-binding 64.2 1.2E+02 0.0027 28.1 12.5 89 126-222 23-111 (336)
91 COG1751 Uncharacterized conser 63.8 40 0.00086 28.0 7.1 90 166-258 2-95 (186)
92 PF00682 HMGL-like: HMGL-like 62.8 52 0.0011 28.8 8.5 102 142-249 11-124 (237)
93 cd00019 AP2Ec AP endonuclease 62.6 47 0.001 29.8 8.5 51 237-304 89-139 (279)
94 PF03102 NeuB: NeuB family; I 62.5 59 0.0013 29.1 8.8 121 72-208 53-188 (241)
95 TIGR02534 mucon_cyclo muconate 62.5 1.4E+02 0.0031 28.2 13.2 85 163-255 213-298 (368)
96 cd00308 enolase_like Enolase-s 61.9 29 0.00064 30.3 6.8 88 163-258 120-208 (229)
97 cd01967 Nitrogenase_MoFe_alpha 61.8 1.5E+02 0.0033 28.3 13.0 105 110-221 72-191 (406)
98 PRK05692 hydroxymethylglutaryl 61.5 22 0.00049 32.6 6.1 104 142-251 23-138 (287)
99 PF00148 Oxidored_nitro: Nitro 61.2 38 0.00082 32.3 7.9 107 110-222 59-177 (398)
100 PRK14459 ribosomal RNA large s 61.0 89 0.0019 29.9 10.2 93 165-257 241-359 (373)
101 cd03324 rTSbeta_L-fuconate_deh 61.0 1.6E+02 0.0036 28.5 12.8 151 75-253 198-352 (415)
102 cd07944 DRE_TIM_HOA_like 4-hyd 60.2 56 0.0012 29.6 8.4 103 140-251 15-127 (266)
103 cd01977 Nitrogenase_VFe_alpha 60.1 1.7E+02 0.0036 28.3 12.1 113 93-220 64-192 (415)
104 COG3623 SgaU Putative L-xylulo 59.8 27 0.00059 31.2 5.9 79 43-136 65-156 (287)
105 COG2159 Predicted metal-depend 59.6 63 0.0014 29.7 8.7 99 155-257 55-168 (293)
106 cd01321 ADGF Adenosine deamina 58.1 1E+02 0.0022 29.1 10.0 99 142-251 140-251 (345)
107 PRK13958 N-(5'-phosphoribosyl) 58.0 35 0.00076 29.7 6.4 65 155-226 17-83 (207)
108 cd03317 NAAAR N-acylamino acid 57.7 1.7E+02 0.0036 27.4 13.2 149 75-255 139-288 (354)
109 PRK09997 hydroxypyruvate isome 57.5 89 0.0019 27.7 9.2 51 237-303 89-139 (258)
110 TIGR01284 alt_nitrog_alph nitr 56.3 2.1E+02 0.0045 28.1 12.6 105 110-220 109-229 (457)
111 TIGR03821 AblA_like_1 lysine-2 56.2 1.7E+02 0.0037 27.2 11.4 96 163-259 143-246 (321)
112 CHL00162 thiG thiamin biosynth 55.7 1.6E+02 0.0035 26.7 10.1 105 141-252 80-195 (267)
113 COG2022 ThiG Uncharacterized e 55.4 1.6E+02 0.0034 26.4 10.0 109 140-255 78-191 (262)
114 TIGR01428 HAD_type_II 2-haloal 55.1 30 0.00065 29.2 5.5 63 147-210 61-127 (198)
115 PRK05283 deoxyribose-phosphate 54.9 96 0.0021 28.1 8.8 80 75-164 147-227 (257)
116 PF00809 Pterin_bind: Pterin b 54.7 1.4E+02 0.0031 25.8 12.0 89 157-255 30-125 (210)
117 PRK14463 ribosomal RNA large s 54.4 1E+02 0.0022 29.2 9.3 101 163-265 207-339 (349)
118 cd00739 DHPS DHPS subgroup of 54.4 1.4E+02 0.003 26.9 9.9 107 79-201 87-209 (257)
119 cd02069 methionine_synthase_B1 54.4 64 0.0014 28.2 7.5 22 72-93 12-33 (213)
120 TIGR01290 nifB nitrogenase cof 54.3 1.6E+02 0.0034 28.9 10.9 110 141-258 59-199 (442)
121 PF11242 DUF2774: Protein of u 54.1 7.6 0.00016 26.9 1.2 20 292-311 15-34 (63)
122 TIGR01283 nifE nitrogenase mol 53.9 1.8E+02 0.0039 28.4 11.4 105 110-221 106-228 (456)
123 cd04742 NPD_FabD 2-Nitropropan 53.7 50 0.0011 32.1 7.2 69 184-254 32-103 (418)
124 PF11020 DUF2610: Domain of un 53.3 10 0.00023 27.6 1.9 25 284-308 48-72 (82)
125 PLN02428 lipoic acid synthase 53.0 2.1E+02 0.0045 27.2 12.9 164 73-257 131-325 (349)
126 TIGR01278 DPOR_BchB light-inde 52.2 1.8E+02 0.004 28.9 11.2 106 110-222 70-194 (511)
127 PF13407 Peripla_BP_4: Peripla 51.9 48 0.001 28.8 6.5 74 144-222 13-86 (257)
128 PRK00730 rnpA ribonuclease P; 51.8 68 0.0015 26.2 6.6 61 126-189 47-110 (138)
129 cd01966 Nitrogenase_NifN_1 Nit 51.5 1.2E+02 0.0025 29.5 9.5 109 110-221 66-189 (417)
130 PRK13352 thiamine biosynthesis 51.5 26 0.00056 33.8 4.8 102 176-305 120-223 (431)
131 PRK15072 bifunctional D-altron 51.2 61 0.0013 31.2 7.5 85 162-254 231-316 (404)
132 PRK14466 ribosomal RNA large s 51.1 1.2E+02 0.0027 28.6 9.2 91 165-257 210-325 (345)
133 PRK09989 hypothetical protein; 51.0 1.3E+02 0.0027 26.7 9.1 52 237-304 89-140 (258)
134 cd00959 DeoC 2-deoxyribose-5-p 51.0 1.6E+02 0.0035 25.3 16.0 159 72-251 14-179 (203)
135 PLN02363 phosphoribosylanthran 50.9 55 0.0012 29.5 6.7 81 132-226 48-130 (256)
136 KOG1549 Cysteine desulfurase N 50.9 85 0.0018 30.5 8.2 73 179-253 144-218 (428)
137 PF03279 Lip_A_acyltrans: Bact 50.7 1.4E+02 0.0031 26.9 9.6 66 78-163 110-175 (295)
138 TIGR03234 OH-pyruv-isom hydrox 50.7 1.1E+02 0.0024 26.9 8.7 51 238-304 89-139 (254)
139 PLN02681 proline dehydrogenase 50.6 2.6E+02 0.0056 27.6 14.4 171 75-257 220-413 (455)
140 PRK05414 urocanate hydratase; 50.3 42 0.00091 33.3 6.0 101 108-226 149-267 (556)
141 TIGR03699 mena_SCO4550 menaqui 50.3 2.2E+02 0.0047 26.5 12.2 128 72-216 72-223 (340)
142 PRK14462 ribosomal RNA large s 50.1 1.7E+02 0.0037 27.8 10.1 89 167-257 225-338 (356)
143 TIGR01228 hutU urocanate hydra 49.9 41 0.00088 33.3 5.9 107 108-226 140-258 (545)
144 PRK14457 ribosomal RNA large s 49.5 2.1E+02 0.0046 27.0 10.6 139 110-257 164-330 (345)
145 PRK01222 N-(5'-phosphoribosyl) 49.0 49 0.0011 28.8 5.9 73 142-226 11-85 (210)
146 PRK09613 thiH thiamine biosynt 48.8 1.9E+02 0.0041 28.6 10.5 106 142-252 115-238 (469)
147 TIGR02082 metH 5-methyltetrahy 48.7 2.3E+02 0.0049 31.6 11.9 126 157-309 379-508 (1178)
148 PRK14464 ribosomal RNA large s 48.7 2.4E+02 0.0052 26.7 11.7 82 174-257 223-317 (344)
149 COG0820 Predicted Fe-S-cluster 48.4 1.4E+02 0.003 28.3 9.0 94 161-257 208-330 (349)
150 PF00101 RuBisCO_small: Ribulo 48.2 1.2E+02 0.0027 23.1 7.6 76 70-171 9-85 (99)
151 COG2200 Rtn c-di-GMP phosphodi 47.8 81 0.0018 28.2 7.3 132 110-254 69-214 (256)
152 TIGR00683 nanA N-acetylneurami 47.6 2.2E+02 0.0048 25.9 13.7 134 70-208 16-174 (290)
153 COG2062 SixA Phosphohistidine 47.4 1.1E+02 0.0025 25.6 7.5 79 110-204 34-113 (163)
154 cd01976 Nitrogenase_MoFe_alpha 47.4 2.7E+02 0.0059 26.9 12.8 105 110-221 83-203 (421)
155 COG0279 GmhA Phosphoheptose is 47.3 1.8E+02 0.0038 24.7 9.4 122 75-209 28-154 (176)
156 PF14871 GHL6: Hypothetical gl 47.2 27 0.00059 28.1 3.7 21 237-257 48-68 (132)
157 COG4130 Predicted sugar epimer 47.0 95 0.0021 27.4 7.1 85 200-303 49-137 (272)
158 PRK14460 ribosomal RNA large s 46.9 1.7E+02 0.0037 27.7 9.6 133 110-257 171-332 (354)
159 PRK03459 rnpA ribonuclease P; 46.8 84 0.0018 24.9 6.4 62 125-189 48-114 (122)
160 COG3215 PilZ Tfp pilus assembl 46.7 49 0.0011 25.5 4.7 72 74-157 19-106 (117)
161 COG1082 IolE Sugar phosphate i 46.4 1.9E+02 0.004 25.5 9.5 110 181-304 19-142 (274)
162 COG2040 MHT1 Homocysteine/sele 46.4 1.6E+02 0.0035 27.1 8.8 174 74-254 42-241 (300)
163 cd03527 RuBisCO_small Ribulose 46.4 1.3E+02 0.0029 23.0 9.5 74 71-170 11-85 (99)
164 TIGR00655 PurU formyltetrahydr 45.8 2.4E+02 0.0052 25.8 12.1 142 75-251 12-165 (280)
165 TIGR01502 B_methylAsp_ase meth 45.6 89 0.0019 30.3 7.6 87 163-255 264-357 (408)
166 PLN02746 hydroxymethylglutaryl 45.3 82 0.0018 29.8 7.1 99 146-252 68-181 (347)
167 TIGR01860 VNFD nitrogenase van 44.9 3.1E+02 0.0068 26.9 11.6 106 110-221 111-232 (461)
168 COG2069 CdhD CO dehydrogenase/ 44.7 2E+02 0.0044 26.7 9.1 93 156-258 161-263 (403)
169 PRK13753 dihydropteroate synth 44.7 2.5E+02 0.0055 25.7 13.8 143 142-309 22-172 (279)
170 TIGR01282 nifD nitrogenase mol 44.7 3E+02 0.0064 27.1 11.2 105 110-221 116-238 (466)
171 TIGR01501 MthylAspMutase methy 44.5 1.7E+02 0.0036 23.7 14.6 113 75-209 15-128 (134)
172 PRK09856 fructoselysine 3-epim 44.5 1.3E+02 0.0029 26.6 8.3 96 195-304 3-106 (275)
173 COG4943 Predicted signal trans 44.3 64 0.0014 31.9 6.2 72 111-191 342-415 (524)
174 PRK14476 nitrogenase molybdenu 44.2 1.2E+02 0.0026 29.7 8.4 108 110-220 77-199 (455)
175 cd04740 DHOD_1B_like Dihydroor 44.1 2.5E+02 0.0054 25.5 11.8 159 74-247 101-286 (296)
176 PRK03031 rnpA ribonuclease P; 43.8 98 0.0021 24.4 6.4 62 126-189 48-114 (122)
177 TIGR01212 radical SAM protein, 43.8 2.6E+02 0.0057 25.7 13.3 105 140-248 89-208 (302)
178 cd07945 DRE_TIM_CMS Leptospira 43.7 2.6E+02 0.0055 25.5 10.8 115 143-262 109-232 (280)
179 cd00405 PRAI Phosphoribosylant 43.6 2.1E+02 0.0045 24.4 10.3 41 162-205 73-113 (203)
180 TIGR00126 deoC deoxyribose-pho 43.6 2.2E+02 0.0048 24.8 9.3 73 75-162 132-205 (211)
181 TIGR03849 arch_ComA phosphosul 43.4 1.1E+02 0.0024 27.3 7.2 98 149-250 12-117 (237)
182 PF06506 PrpR_N: Propionate ca 43.3 35 0.00076 28.7 4.0 65 176-251 63-130 (176)
183 PRK09490 metH B12-dependent me 43.3 5.2E+02 0.011 29.0 16.3 123 157-308 395-523 (1229)
184 COG2987 HutU Urocanate hydrata 43.2 43 0.00093 32.7 4.8 105 110-226 151-267 (561)
185 PRK01313 rnpA ribonuclease P; 42.9 1.1E+02 0.0023 24.6 6.5 60 126-188 48-113 (129)
186 PRK00507 deoxyribose-phosphate 42.2 1.4E+02 0.003 26.3 7.7 27 73-99 134-160 (221)
187 cd03174 DRE_TIM_metallolyase D 42.1 2.4E+02 0.0052 24.8 13.7 26 72-97 16-41 (265)
188 PRK14455 ribosomal RNA large s 42.1 1.4E+02 0.003 28.4 8.2 90 166-257 223-337 (356)
189 TIGR02026 BchE magnesium-proto 42.0 3.2E+02 0.0069 27.1 11.1 21 142-162 222-242 (497)
190 cd03527 RuBisCO_small Ribulose 42.0 1E+02 0.0022 23.6 5.9 60 141-200 11-86 (99)
191 PRK14467 ribosomal RNA large s 42.0 3.1E+02 0.0067 26.0 11.3 97 161-257 207-329 (348)
192 COG1560 HtrB Lauroyl/myristoyl 41.9 2.7E+02 0.0058 25.9 9.9 88 75-192 109-196 (308)
193 TIGR01861 ANFD nitrogenase iro 41.7 3.8E+02 0.0081 26.9 12.0 106 110-221 112-233 (513)
194 PF01120 Alpha_L_fucos: Alpha- 41.7 1.1E+02 0.0024 28.7 7.5 34 223-256 125-161 (346)
195 cd01821 Rhamnogalacturan_acety 41.5 1.7E+02 0.0038 24.4 8.2 108 181-304 25-149 (198)
196 TIGR00048 radical SAM enzyme, 41.4 1.7E+02 0.0036 27.8 8.6 90 166-257 219-333 (355)
197 PRK00499 rnpA ribonuclease P; 41.3 1.1E+02 0.0025 23.6 6.4 61 126-189 39-104 (114)
198 PF01175 Urocanase: Urocanase; 41.3 75 0.0016 31.6 6.2 84 126-226 156-257 (546)
199 PRK11865 pyruvate ferredoxin o 41.0 2.3E+02 0.0049 26.3 9.2 115 78-212 165-288 (299)
200 PRK08195 4-hyroxy-2-oxovalerat 40.9 1.4E+02 0.0031 28.0 8.0 25 141-166 21-45 (337)
201 PRK00077 eno enolase; Provisio 40.9 1.4E+02 0.003 29.1 8.2 96 143-251 262-361 (425)
202 cd06300 PBP1_ABC_sugar_binding 40.8 2.4E+02 0.0053 24.4 9.6 73 144-220 14-89 (272)
203 PRK12331 oxaloacetate decarbox 40.7 1.4E+02 0.0031 29.3 8.2 97 151-250 31-140 (448)
204 cd00950 DHDPS Dihydrodipicolin 40.5 2.8E+02 0.006 25.0 14.1 26 70-95 16-41 (284)
205 TIGR03679 arCOG00187 arCOG0018 40.4 2.5E+02 0.0054 24.5 11.7 130 149-304 46-176 (218)
206 TIGR01496 DHPS dihydropteroate 40.3 2.8E+02 0.006 24.9 11.7 107 79-201 86-207 (257)
207 COG1801 Uncharacterized conser 40.2 2.9E+02 0.0062 25.1 11.2 80 81-173 29-114 (263)
208 COG1140 NarY Nitrate reductase 40.2 8.3 0.00018 36.6 -0.4 55 189-248 263-317 (513)
209 PF14606 Lipase_GDSL_3: GDSL-l 40.2 1.2E+02 0.0027 25.8 6.8 81 86-172 59-146 (178)
210 PLN00191 enolase 39.7 1.3E+02 0.0028 29.7 7.8 97 143-252 296-394 (457)
211 COG2179 Predicted hydrolase of 39.6 1.3E+02 0.0029 25.4 6.7 85 154-249 22-110 (175)
212 cd01948 EAL EAL domain. This d 39.5 1.7E+02 0.0037 24.9 8.0 117 127-254 82-210 (240)
213 PRK09061 D-glutamate deacylase 39.4 4E+02 0.0086 26.5 12.1 116 75-201 169-286 (509)
214 PRK05301 pyrroloquinoline quin 39.3 3.4E+02 0.0073 25.6 14.6 128 71-218 45-184 (378)
215 PRK04390 rnpA ribonuclease P; 39.2 1.4E+02 0.003 23.5 6.6 62 126-189 45-110 (120)
216 TIGR00190 thiC thiamine biosyn 38.8 3.7E+02 0.0081 26.0 11.2 86 140-250 135-220 (423)
217 COG4077 Uncharacterized protei 38.8 80 0.0017 25.5 5.0 81 127-211 34-114 (156)
218 smart00052 EAL Putative diguan 38.7 2.4E+02 0.0052 24.0 8.8 101 145-254 99-211 (241)
219 KOG2499 Beta-N-acetylhexosamin 38.7 1.1E+02 0.0023 30.4 6.8 66 149-217 198-264 (542)
220 PRK14477 bifunctional nitrogen 38.7 1.9E+02 0.004 31.3 9.4 109 110-221 556-676 (917)
221 PRK14478 nitrogenase molybdenu 38.6 2.5E+02 0.0054 27.7 9.7 105 110-221 104-222 (475)
222 PRK02261 methylaspartate mutas 38.3 2.1E+02 0.0046 23.0 14.0 112 75-208 17-129 (137)
223 PF01402 RHH_1: Ribbon-helix-h 38.0 39 0.00085 20.4 2.6 20 289-308 10-29 (39)
224 COG2873 MET17 O-acetylhomoseri 37.9 3.1E+02 0.0067 26.5 9.5 140 78-254 67-206 (426)
225 PRK07534 methionine synthase I 37.9 3.5E+02 0.0076 25.4 15.4 152 74-228 44-214 (336)
226 TIGR01927 menC_gamma/gm+ o-suc 37.9 1.3E+02 0.0028 27.8 7.1 87 163-259 183-270 (307)
227 TIGR03217 4OH_2_O_val_ald 4-hy 37.8 1.8E+02 0.0038 27.3 8.1 34 183-217 93-128 (333)
228 TIGR01182 eda Entner-Doudoroff 37.7 2.1E+02 0.0045 24.9 8.0 89 142-251 17-106 (204)
229 TIGR03821 AblA_like_1 lysine-2 37.6 3.4E+02 0.0074 25.2 13.5 132 74-217 127-265 (321)
230 COG0329 DapA Dihydrodipicolina 37.4 3.3E+02 0.0072 25.0 11.1 113 142-258 22-143 (299)
231 PLN02591 tryptophan synthase 37.4 3.1E+02 0.0067 24.6 10.2 13 161-173 28-40 (250)
232 PRK14465 ribosomal RNA large s 37.3 2.7E+02 0.0058 26.3 9.2 90 166-257 216-329 (342)
233 cd07943 DRE_TIM_HOA 4-hydroxy- 37.3 1.7E+02 0.0038 26.1 7.8 102 142-251 19-130 (263)
234 COG0135 TrpF Phosphoribosylant 37.2 99 0.0021 27.0 5.9 80 156-250 19-102 (208)
235 COG2355 Zn-dependent dipeptida 37.1 2E+02 0.0044 26.8 8.2 32 166-198 97-128 (313)
236 TIGR00238 KamA family protein. 37.0 3.5E+02 0.0077 25.2 11.0 111 149-260 145-264 (331)
237 TIGR01210 conserved hypothetic 36.9 1.8E+02 0.004 26.9 8.0 75 180-256 117-211 (313)
238 PF10668 Phage_terminase: Phag 36.9 26 0.00057 24.2 1.8 17 292-308 24-40 (60)
239 TIGR00640 acid_CoA_mut_C methy 36.8 2.2E+02 0.0048 22.8 12.4 108 75-210 16-125 (132)
240 TIGR01285 nifN nitrogenase mol 36.6 3.5E+02 0.0076 26.3 10.3 110 110-221 76-199 (432)
241 PF07994 NAD_binding_5: Myo-in 36.6 2E+02 0.0044 26.5 8.1 95 144-251 131-230 (295)
242 PLN02489 homocysteine S-methyl 36.3 3.7E+02 0.008 25.2 13.4 174 74-253 54-274 (335)
243 cd00952 CHBPH_aldolase Trans-o 36.2 3.5E+02 0.0076 24.9 12.9 133 70-208 24-180 (309)
244 COG0635 HemN Coproporphyrinoge 36.2 2.2E+02 0.0047 27.7 8.7 60 141-202 200-276 (416)
245 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.0 1.7E+02 0.0037 26.5 7.6 15 152-166 27-41 (275)
246 PRK08195 4-hyroxy-2-oxovalerat 36.0 3.7E+02 0.0081 25.2 17.1 24 72-95 22-45 (337)
247 cd08556 GDPD Glycerophosphodie 35.8 2.4E+02 0.0053 23.0 10.8 20 75-94 13-32 (189)
248 PRK10550 tRNA-dihydrouridine s 35.7 3.6E+02 0.0079 25.0 13.2 128 74-210 74-214 (312)
249 PRK09082 methionine aminotrans 35.5 3.8E+02 0.0082 25.1 12.3 150 75-254 46-204 (386)
250 TIGR02109 PQQ_syn_pqqE coenzym 35.5 3.7E+02 0.0079 25.1 10.0 13 178-190 69-81 (358)
251 TIGR00398 metG methionyl-tRNA 35.3 2.2E+02 0.0047 28.4 8.9 48 144-193 67-114 (530)
252 TIGR00126 deoC deoxyribose-pho 35.3 3E+02 0.0066 24.0 17.3 160 71-251 14-180 (211)
253 PRK12569 hypothetical protein; 35.3 1.5E+02 0.0033 26.6 6.8 74 52-158 14-98 (245)
254 PLN03186 DNA repair protein RA 34.9 3.8E+02 0.0083 25.2 9.9 61 149-210 110-179 (342)
255 cd07943 DRE_TIM_HOA 4-hydroxy- 34.9 3.3E+02 0.0072 24.3 16.2 24 72-95 19-42 (263)
256 PF14606 Lipase_GDSL_3: GDSL-l 34.8 2.1E+02 0.0045 24.4 7.3 70 84-169 29-100 (178)
257 PRK12928 lipoyl synthase; Prov 34.7 3.4E+02 0.0074 24.9 9.4 166 72-255 87-280 (290)
258 PRK08446 coproporphyrinogen II 34.7 3.2E+02 0.0069 25.6 9.4 118 79-201 99-230 (350)
259 PRK11613 folP dihydropteroate 34.7 3.6E+02 0.0079 24.7 12.9 142 143-309 36-184 (282)
260 PF07287 DUF1446: Protein of u 34.6 74 0.0016 30.3 5.0 94 180-309 12-105 (362)
261 PRK12268 methionyl-tRNA synthe 34.6 1.9E+02 0.0042 29.0 8.4 103 91-200 6-127 (556)
262 PF00101 RuBisCO_small: Ribulo 34.6 1.3E+02 0.0028 23.0 5.5 60 142-201 11-86 (99)
263 PRK15440 L-rhamnonate dehydrat 34.4 79 0.0017 30.4 5.3 69 179-252 247-318 (394)
264 PRK11059 regulatory protein Cs 34.4 2E+02 0.0044 29.3 8.7 104 142-254 495-611 (640)
265 KOG0053 Cystathionine beta-lya 34.3 2.6E+02 0.0057 27.1 8.7 103 150-261 104-207 (409)
266 cd07948 DRE_TIM_HCS Saccharomy 34.3 2.7E+02 0.006 25.0 8.6 96 148-252 24-131 (262)
267 PRK05406 LamB/YcsF family prot 34.2 1.6E+02 0.0034 26.5 6.7 74 52-158 13-95 (246)
268 PRK13478 phosphonoacetaldehyde 34.2 1.4E+02 0.0029 26.7 6.6 37 176-213 103-139 (267)
269 PF01904 DUF72: Protein of unk 34.1 2.6E+02 0.0056 24.6 8.2 88 89-189 19-113 (230)
270 PRK10551 phage resistance prot 34.1 1.6E+02 0.0034 29.4 7.6 116 128-254 349-475 (518)
271 cd00316 Oxidoreductase_nitroge 34.0 4E+02 0.0088 25.0 12.6 106 110-222 66-185 (399)
272 KOG0369 Pyruvate carboxylase [ 34.0 2.6E+02 0.0055 29.2 8.7 148 75-258 43-196 (1176)
273 KOG0922 DEAH-box RNA helicase 33.9 43 0.00093 34.3 3.4 38 154-193 414-451 (674)
274 TIGR01422 phosphonatase phosph 33.8 1.3E+02 0.0029 26.3 6.5 38 175-213 100-137 (253)
275 PRK09282 pyruvate carboxylase 33.6 1.8E+02 0.0039 29.7 7.9 97 151-250 31-140 (592)
276 PRK09485 mmuM homocysteine met 33.6 3.8E+02 0.0083 24.6 15.5 151 74-227 45-223 (304)
277 PTZ00081 enolase; Provisional 33.5 2.3E+02 0.0049 27.8 8.4 98 142-252 281-382 (439)
278 COG2185 Sbm Methylmalonyl-CoA 33.5 1.5E+02 0.0032 24.3 6.0 76 191-303 16-93 (143)
279 PRK14456 ribosomal RNA large s 33.3 2.4E+02 0.0053 26.9 8.4 90 166-257 238-353 (368)
280 PF02679 ComA: (2R)-phospho-3- 33.3 1.6E+02 0.0035 26.4 6.7 100 149-251 25-131 (244)
281 TIGR00542 hxl6Piso_put hexulos 33.2 3.5E+02 0.0076 24.1 11.3 23 75-97 16-38 (279)
282 PRK13210 putative L-xylulose 5 33.1 3.1E+02 0.0067 24.3 8.9 10 157-166 27-36 (284)
283 PRK09875 putative hydrolase; P 32.8 3.9E+02 0.0085 24.5 12.4 54 188-247 119-177 (292)
284 PRK01732 rnpA ribonuclease P; 32.8 2.1E+02 0.0045 22.3 6.6 61 126-189 46-111 (114)
285 PRK14477 bifunctional nitrogen 32.7 6.5E+02 0.014 27.2 12.3 104 110-220 97-214 (917)
286 PRK06015 keto-hydroxyglutarate 32.7 1.3E+02 0.0028 26.2 5.8 88 143-251 14-102 (201)
287 PRK04820 rnpA ribonuclease P; 32.4 2.1E+02 0.0047 23.4 6.8 62 126-189 49-114 (145)
288 PF03851 UvdE: UV-endonuclease 32.1 4E+02 0.0086 24.4 9.4 142 75-225 45-212 (275)
289 smart00481 POLIIIAc DNA polyme 32.1 1.1E+02 0.0024 20.8 4.5 38 179-217 17-55 (67)
290 cd04734 OYE_like_3_FMN Old yel 31.9 4.3E+02 0.0094 24.7 10.1 109 72-199 131-250 (343)
291 PRK00396 rnpA ribonuclease P; 31.9 1.9E+02 0.0042 23.2 6.4 61 126-189 47-112 (130)
292 PRK13352 thiamine biosynthesis 31.8 4.9E+02 0.011 25.3 11.2 91 140-259 138-228 (431)
293 TIGR03278 methan_mark_10 putat 31.7 4.2E+02 0.009 25.7 9.7 54 142-196 54-108 (404)
294 COG2874 FlaH Predicted ATPases 31.5 1.8E+02 0.004 25.8 6.5 136 38-200 18-168 (235)
295 PF13378 MR_MLE_C: Enolase C-t 31.5 26 0.00057 26.7 1.3 52 198-254 3-54 (111)
296 PRK00507 deoxyribose-phosphate 31.4 3.6E+02 0.0078 23.6 13.7 135 71-226 18-159 (221)
297 PRK05660 HemN family oxidoredu 31.3 2.5E+02 0.0054 26.7 8.2 89 73-201 141-242 (378)
298 PRK12323 DNA polymerase III su 31.1 1.3E+02 0.0028 31.2 6.4 72 142-214 104-177 (700)
299 PF10566 Glyco_hydro_97: Glyco 31.1 1E+02 0.0022 28.2 5.2 59 199-257 28-97 (273)
300 TIGR00238 KamA family protein. 31.1 4.4E+02 0.0096 24.6 13.1 133 74-217 144-282 (331)
301 PRK01492 rnpA ribonuclease P; 31.0 2.3E+02 0.0049 22.3 6.5 60 126-187 47-114 (118)
302 cd03770 SR_TndX_transposase Se 30.9 90 0.002 25.0 4.4 42 148-189 54-97 (140)
303 KOG1321 Protoheme ferro-lyase 30.7 77 0.0017 29.6 4.2 63 179-244 142-211 (395)
304 PF01081 Aldolase: KDPG and KH 30.6 1.5E+02 0.0032 25.6 5.9 89 142-251 17-106 (196)
305 cd06311 PBP1_ABC_sugar_binding 30.6 3.6E+02 0.0078 23.4 9.7 75 144-221 14-90 (274)
306 COG2102 Predicted ATPases of P 30.4 2.4E+02 0.0051 25.0 7.1 102 176-305 75-177 (223)
307 PRK02901 O-succinylbenzoate sy 30.4 4.6E+02 0.0099 24.5 17.2 24 67-90 46-69 (327)
308 PRK07003 DNA polymerase III su 30.4 1.6E+02 0.0034 31.3 6.8 69 142-211 99-169 (830)
309 TIGR00190 thiC thiamine biosyn 30.3 50 0.0011 31.8 3.1 86 196-305 133-220 (423)
310 TIGR01060 eno phosphopyruvate 30.2 3.1E+02 0.0068 26.6 8.7 82 162-251 277-362 (425)
311 TIGR00188 rnpA ribonuclease P 30.2 2.1E+02 0.0045 21.8 6.1 59 126-187 42-104 (105)
312 cd00954 NAL N-Acetylneuraminic 30.2 2.4E+02 0.0052 25.6 7.6 108 141-254 17-136 (288)
313 cd00954 NAL N-Acetylneuraminic 30.2 4.2E+02 0.009 24.0 13.9 134 70-208 16-174 (288)
314 cd03313 enolase Enolase: Enola 30.1 3.1E+02 0.0067 26.5 8.6 96 143-251 262-361 (408)
315 PF08734 GYD: GYD domain; Int 30.1 2.3E+02 0.005 21.0 6.6 65 145-209 19-90 (91)
316 PRK08776 cystathionine gamma-s 30.0 4.5E+02 0.0097 25.2 9.8 14 238-251 167-180 (405)
317 PRK15063 isocitrate lyase; Pro 29.9 3E+02 0.0066 26.8 8.3 73 146-221 263-344 (428)
318 KOG4175 Tryptophan synthase al 29.8 2.1E+02 0.0046 25.0 6.5 113 153-304 36-151 (268)
319 PLN03228 methylthioalkylmalate 29.7 2.9E+02 0.0062 27.7 8.4 109 142-256 103-232 (503)
320 PRK02901 O-succinylbenzoate sy 29.6 3.3E+02 0.0071 25.5 8.5 83 163-258 161-244 (327)
321 cd00338 Ser_Recombinase Serine 29.6 1E+02 0.0023 23.9 4.6 43 148-190 51-95 (137)
322 cd03314 MAL Methylaspartate am 29.6 3.2E+02 0.0069 26.1 8.5 85 165-254 229-320 (369)
323 KOG0059 Lipid exporter ABCA1 a 29.5 2.1E+02 0.0046 30.7 8.0 69 140-210 668-766 (885)
324 PF01118 Semialdhyde_dh: Semia 29.4 61 0.0013 25.2 3.1 27 74-100 76-102 (121)
325 PRK14468 ribosomal RNA large s 29.4 4.6E+02 0.01 24.7 9.5 91 165-257 206-321 (343)
326 cd01832 SGNH_hydrolase_like_1 29.4 3E+02 0.0065 22.4 7.6 53 237-304 96-148 (185)
327 PF13580 SIS_2: SIS domain; PD 29.4 94 0.002 24.8 4.3 115 74-198 21-137 (138)
328 PRK11840 bifunctional sulfur c 28.9 4.9E+02 0.011 24.4 12.9 70 140-210 145-216 (326)
329 COG2089 SpsE Sialic acid synth 28.9 5E+02 0.011 24.5 11.7 124 72-211 87-225 (347)
330 COG0422 ThiC Thiamine biosynth 28.8 5.4E+02 0.012 24.8 12.0 135 75-250 78-221 (432)
331 PF09989 DUF2229: CoA enzyme a 28.8 3.2E+02 0.0069 23.9 7.8 35 217-252 184-218 (221)
332 TIGR01856 hisJ_fam histidinol 28.7 4.1E+02 0.009 23.5 9.6 168 75-250 15-233 (253)
333 PRK05283 deoxyribose-phosphate 28.7 2.9E+02 0.0063 25.0 7.6 142 71-228 22-172 (257)
334 COG3113 Predicted NTP binding 28.4 1.1E+02 0.0023 23.5 4.0 62 147-211 28-89 (99)
335 PRK05826 pyruvate kinase; Prov 28.1 6E+02 0.013 25.1 11.1 92 78-192 176-274 (465)
336 cd02930 DCR_FMN 2,4-dienoyl-Co 28.1 4.9E+02 0.011 24.4 9.5 14 81-94 143-156 (353)
337 TIGR02090 LEU1_arch isopropylm 27.8 5.3E+02 0.011 24.4 9.9 25 72-96 19-43 (363)
338 cd06569 GH20_Sm-chitobiase-lik 27.8 79 0.0017 31.0 4.2 73 142-218 19-112 (445)
339 cd06568 GH20_SpHex_like A subg 27.7 59 0.0013 30.4 3.2 73 142-218 15-90 (329)
340 PF06415 iPGM_N: BPG-independe 27.6 1.9E+02 0.004 25.6 6.0 76 176-251 13-99 (223)
341 PRK06806 fructose-bisphosphate 27.6 2.1E+02 0.0046 26.1 6.7 118 181-304 8-131 (281)
342 cd06316 PBP1_ABC_sugar_binding 27.5 4.2E+02 0.0091 23.4 8.7 74 144-222 14-87 (294)
343 TIGR01286 nifK nitrogenase mol 27.3 3.9E+02 0.0085 26.8 9.0 108 110-221 127-252 (515)
344 PRK01060 endonuclease IV; Prov 27.0 3E+02 0.0064 24.5 7.6 53 194-248 3-62 (281)
345 PRK13803 bifunctional phosphor 27.0 3E+02 0.0064 28.2 8.3 76 142-227 11-88 (610)
346 cd01915 CODH Carbon monoxide d 27.0 2.2E+02 0.0047 29.2 7.1 22 180-201 413-438 (613)
347 TIGR03470 HpnH hopanoid biosyn 26.9 5.1E+02 0.011 23.9 13.8 51 176-226 148-201 (318)
348 smart00812 Alpha_L_fucos Alpha 26.6 4.1E+02 0.0089 25.5 8.7 32 223-254 115-149 (384)
349 PRK05628 coproporphyrinogen II 26.3 3.7E+02 0.008 25.4 8.4 88 79-170 109-199 (375)
350 TIGR03217 4OH_2_O_val_ald 4-hy 26.2 5.5E+02 0.012 24.1 16.7 179 72-262 21-229 (333)
351 PRK06294 coproporphyrinogen II 26.1 3.6E+02 0.0079 25.5 8.3 119 78-201 103-242 (370)
352 TIGR02109 PQQ_syn_pqqE coenzym 26.1 5.4E+02 0.012 23.9 13.7 128 71-218 36-175 (358)
353 PRK00588 rnpA ribonuclease P; 26.0 2.4E+02 0.0052 22.1 5.9 62 125-189 43-109 (118)
354 PRK10508 hypothetical protein; 25.8 91 0.002 29.2 4.1 43 142-188 286-328 (333)
355 PRK11194 ribosomal RNA large s 25.7 5.6E+02 0.012 24.5 9.4 88 167-256 221-336 (372)
356 PF04748 Polysacc_deac_2: Dive 25.7 4.5E+02 0.0097 22.9 8.6 52 72-135 71-127 (213)
357 PRK10060 RNase II stability mo 25.5 3.4E+02 0.0075 27.8 8.6 71 176-254 540-619 (663)
358 COG1387 HIS2 Histidinol phosph 25.5 4.7E+02 0.01 23.1 9.8 155 76-250 17-190 (237)
359 CHL00200 trpA tryptophan synth 25.4 5.1E+02 0.011 23.4 10.7 91 142-247 26-120 (263)
360 smart00857 Resolvase Resolvase 25.4 1.9E+02 0.0042 22.8 5.5 19 75-93 19-37 (148)
361 PLN02591 tryptophan synthase 25.4 5E+02 0.011 23.3 14.3 31 73-103 14-44 (250)
362 PRK14040 oxaloacetate decarbox 25.4 3.6E+02 0.0078 27.6 8.4 101 148-251 29-142 (593)
363 TIGR02637 RhaS rhamnose ABC tr 25.3 4.8E+02 0.011 23.1 10.3 74 144-221 13-86 (302)
364 PRK12267 methionyl-tRNA synthe 25.2 4.2E+02 0.0091 27.2 9.1 49 144-194 72-120 (648)
365 PRK09427 bifunctional indole-3 25.2 2.1E+02 0.0045 28.2 6.5 62 157-227 275-338 (454)
366 PRK13347 coproporphyrinogen II 25.2 2.7E+02 0.0059 27.2 7.4 87 73-200 186-289 (453)
367 PRK12738 kbaY tagatose-bisphos 25.1 2.2E+02 0.0049 26.1 6.3 109 181-304 8-131 (286)
368 TIGR02814 pfaD_fam PfaD family 25.1 2.8E+02 0.006 27.3 7.3 69 184-254 37-108 (444)
369 PLN02775 Probable dihydrodipic 25.0 4.5E+02 0.0099 24.2 8.3 57 150-209 67-123 (286)
370 PRK07764 DNA polymerase III su 24.8 2.5E+02 0.0053 30.0 7.3 59 142-201 100-160 (824)
371 PF10100 DUF2338: Uncharacteri 24.8 4.3E+02 0.0093 25.7 8.2 136 149-305 125-274 (429)
372 PRK00133 metG methionyl-tRNA s 24.7 3.7E+02 0.008 27.8 8.6 96 91-193 5-117 (673)
373 cd04733 OYE_like_2_FMN Old yel 24.7 5.7E+02 0.012 23.7 9.2 102 79-200 153-258 (338)
374 PRK07535 methyltetrahydrofolat 24.7 5.2E+02 0.011 23.3 9.4 109 79-201 80-200 (261)
375 PF12816 Vps8: Golgi CORVET co 24.6 56 0.0012 28.2 2.2 64 179-247 4-67 (196)
376 COG1167 ARO8 Transcriptional r 24.6 6.7E+02 0.014 24.5 11.8 151 73-251 105-265 (459)
377 TIGR02026 BchE magnesium-proto 24.6 3.6E+02 0.0077 26.7 8.2 77 175-254 223-305 (497)
378 PF00578 AhpC-TSA: AhpC/TSA fa 24.5 1.9E+02 0.0042 21.7 5.2 41 178-221 43-86 (124)
379 PRK00454 engB GTP-binding prot 24.5 4E+02 0.0086 21.8 9.7 59 128-190 138-196 (196)
380 PRK15108 biotin synthase; Prov 24.4 3.8E+02 0.0082 25.2 8.0 65 142-210 76-144 (345)
381 PF13289 SIR2_2: SIR2-like dom 24.4 1.8E+02 0.0039 22.7 5.1 69 176-250 73-143 (143)
382 PRK05301 pyrroloquinoline quin 24.4 6E+02 0.013 23.9 10.2 18 237-254 173-190 (378)
383 COG1121 ZnuC ABC-type Mn/Zn tr 24.3 2.7E+02 0.0058 25.2 6.5 47 160-208 155-205 (254)
384 PRK13010 purU formyltetrahydro 24.2 5.6E+02 0.012 23.5 13.7 142 75-251 21-174 (289)
385 PRK09061 D-glutamate deacylase 24.2 5E+02 0.011 25.8 9.2 25 203-227 262-286 (509)
386 PF00290 Trp_syntA: Tryptophan 24.1 2.1E+02 0.0046 25.8 5.9 73 177-254 72-148 (259)
387 TIGR00035 asp_race aspartate r 24.1 3.5E+02 0.0076 23.6 7.3 63 142-205 14-89 (229)
388 COG1831 Predicted metal-depend 24.1 2.3E+02 0.005 25.9 6.0 43 179-221 147-189 (285)
389 PF00072 Response_reg: Respons 24.0 2.5E+02 0.0055 20.3 5.7 56 153-210 34-91 (112)
390 TIGR00538 hemN oxygen-independ 24.0 2.9E+02 0.0064 26.9 7.4 114 78-202 151-290 (455)
391 cd00885 cinA Competence-damage 23.9 2.8E+02 0.0061 23.2 6.3 81 80-189 23-104 (170)
392 PRK12677 xylose isomerase; Pro 23.9 3.2E+02 0.0069 26.2 7.4 53 237-301 118-170 (384)
393 cd00019 AP2Ec AP endonuclease 23.9 5.1E+02 0.011 23.0 8.5 51 237-303 49-100 (279)
394 PRK14454 ribosomal RNA large s 23.9 6.1E+02 0.013 23.8 9.4 90 165-256 211-325 (342)
395 PRK05672 dnaE2 error-prone DNA 23.9 1E+03 0.022 26.3 14.0 171 75-269 179-386 (1046)
396 PRK02842 light-independent pro 23.8 6.7E+02 0.014 24.2 9.9 102 110-220 81-195 (427)
397 CHL00200 trpA tryptophan synth 23.8 5.4E+02 0.012 23.2 14.0 127 73-211 27-166 (263)
398 cd06320 PBP1_allose_binding Pe 23.7 4.8E+02 0.01 22.6 10.0 14 237-250 143-157 (275)
399 PRK14470 ribosomal RNA large s 23.7 5.3E+02 0.011 24.2 8.7 90 166-257 208-322 (336)
400 PF01487 DHquinase_I: Type I 3 23.7 4.8E+02 0.01 22.5 9.3 109 73-198 73-181 (224)
401 TIGR01163 rpe ribulose-phospha 23.6 3.4E+02 0.0074 22.8 7.0 33 157-189 22-54 (210)
402 PRK07379 coproporphyrinogen II 23.6 4E+02 0.0087 25.5 8.1 119 78-201 115-254 (400)
403 cd06562 GH20_HexA_HexB-like Be 23.5 82 0.0018 29.7 3.3 70 142-218 15-85 (348)
404 PRK04147 N-acetylneuraminate l 23.4 5.6E+02 0.012 23.2 13.1 133 70-208 19-176 (293)
405 PF01619 Pro_dh: Proline dehyd 23.4 1.1E+02 0.0024 28.3 4.1 165 75-257 92-284 (313)
406 TIGR00221 nagA N-acetylglucosa 23.3 6.5E+02 0.014 24.0 9.4 125 73-211 75-211 (380)
407 PRK13561 putative diguanylate 23.2 1.6E+02 0.0034 30.0 5.6 73 177-254 534-612 (651)
408 cd01828 sialate_O-acetylestera 23.1 4E+02 0.0086 21.4 8.3 95 191-303 23-126 (169)
409 cd01834 SGNH_hydrolase_like_2 23.1 2.4E+02 0.0051 23.0 5.8 101 192-304 36-150 (191)
410 cd08557 PI-PLCc_bacteria_like 23.1 2.2E+02 0.0048 25.1 5.9 19 80-98 42-60 (271)
411 cd04731 HisF The cyclase subun 23.0 5.1E+02 0.011 22.6 13.5 53 155-210 158-213 (243)
412 TIGR00423 radical SAM domain p 23.0 5.9E+02 0.013 23.3 9.5 22 237-258 149-170 (309)
413 PRK12581 oxaloacetate decarbox 22.9 7.5E+02 0.016 24.5 12.2 155 74-247 104-263 (468)
414 TIGR02329 propionate_PrpR prop 22.9 2.9E+02 0.0063 27.7 7.2 76 163-251 74-150 (526)
415 cd01971 Nitrogenase_VnfN_like 22.9 6.9E+02 0.015 24.1 10.3 107 110-223 71-193 (427)
416 PRK06552 keto-hydroxyglutarate 22.7 3.1E+02 0.0066 23.9 6.5 89 142-251 22-114 (213)
417 PLN02417 dihydrodipicolinate s 22.6 5.7E+02 0.012 23.0 11.9 108 70-190 17-126 (280)
418 PF00809 Pterin_bind: Pterin b 22.6 3.5E+02 0.0076 23.3 6.9 107 79-199 83-205 (210)
419 KOG2965 Arginase [Amino acid t 22.6 3.4E+02 0.0074 24.8 6.7 45 151-198 194-238 (318)
420 PRK01222 N-(5'-phosphoribosyl) 22.6 2.9E+02 0.0063 23.9 6.4 49 142-200 64-112 (210)
421 PF13380 CoA_binding_2: CoA bi 22.5 1.3E+02 0.0027 23.4 3.7 15 237-251 93-107 (116)
422 cd03320 OSBS o-Succinylbenzoat 22.5 2.2E+02 0.0048 25.4 5.8 86 163-257 153-238 (263)
423 COG0826 Collagenase and relate 22.4 1.8E+02 0.0039 27.5 5.3 46 176-221 12-67 (347)
424 TIGR00674 dapA dihydrodipicoli 22.4 5.8E+02 0.013 23.0 14.3 25 70-94 14-38 (285)
425 PRK06027 purU formyltetrahydro 22.3 6E+02 0.013 23.2 11.5 142 75-251 18-170 (286)
426 PRK14469 ribosomal RNA large s 22.1 6.6E+02 0.014 23.5 10.3 89 166-256 212-324 (343)
427 PRK08419 lipid A biosynthesis 22.0 6E+02 0.013 23.0 9.6 18 237-254 214-231 (298)
428 PRK10200 putative racemase; Pr 21.8 3.9E+02 0.0084 23.4 7.1 66 142-208 14-92 (230)
429 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.8 6E+02 0.013 22.9 15.5 24 73-96 19-42 (275)
430 COG0710 AroD 3-dehydroquinate 21.7 5.7E+02 0.012 22.7 16.1 81 73-165 12-98 (231)
431 PRK13505 formate--tetrahydrofo 21.7 1.3E+02 0.0029 30.2 4.4 55 203-258 359-413 (557)
432 TIGR03700 mena_SCO4494 putativ 21.7 6.7E+02 0.014 23.5 10.4 47 142-190 79-125 (351)
433 COG0289 DapB Dihydrodipicolina 21.7 2.7E+02 0.0058 25.4 6.0 43 172-214 75-117 (266)
434 PRK00915 2-isopropylmalate syn 21.7 5.9E+02 0.013 25.4 9.1 98 148-250 28-137 (513)
435 TIGR00973 leuA_bact 2-isopropy 21.7 8E+02 0.017 24.4 10.6 71 142-214 110-186 (494)
436 PRK13015 3-dehydroquinate dehy 21.6 3.4E+02 0.0074 22.3 6.1 79 141-230 25-105 (146)
437 PRK09776 putative diguanylate 21.6 4.2E+02 0.0092 28.6 8.7 114 129-253 926-1051(1092)
438 TIGR01859 fruc_bis_ald_ fructo 21.5 3.5E+02 0.0077 24.7 6.9 118 181-304 6-131 (282)
439 KOG0259 Tyrosine aminotransfer 21.5 7.5E+02 0.016 24.0 16.4 164 75-261 81-275 (447)
440 COG2109 BtuR ATP:corrinoid ade 21.5 5.3E+02 0.011 22.4 7.4 119 75-211 43-175 (198)
441 PRK11359 cyclic-di-GMP phospho 21.5 6.8E+02 0.015 25.8 10.0 70 177-254 678-756 (799)
442 COG0145 HyuA N-methylhydantoin 21.4 5.4E+02 0.012 26.8 8.9 90 71-172 135-242 (674)
443 PRK08208 coproporphyrinogen II 21.2 4.6E+02 0.01 25.4 8.1 88 73-200 175-273 (430)
444 COG1168 MalY Bifunctional PLP- 21.2 7.5E+02 0.016 23.8 14.3 132 75-229 41-204 (388)
445 PTZ00124 adenosine deaminase; 21.0 7.2E+02 0.016 23.6 14.0 163 75-257 106-280 (362)
446 PRK10128 2-keto-3-deoxy-L-rham 20.9 6.3E+02 0.014 22.9 10.0 124 73-229 101-243 (267)
447 COG1603 RPP1 RNase P/RNase MRP 20.9 6E+02 0.013 22.6 8.9 44 142-197 61-104 (229)
448 COG1151 6Fe-6S prismane cluste 20.8 4.7E+02 0.01 26.5 7.9 51 145-196 360-412 (576)
449 cd06306 PBP1_TorT-like TorT-li 20.8 5.6E+02 0.012 22.2 9.9 74 143-221 13-86 (268)
450 PRK06361 hypothetical protein; 20.7 5.3E+02 0.011 21.9 17.1 185 75-308 10-197 (212)
451 PF01964 ThiC: ThiC family; I 20.7 35 0.00077 32.8 0.2 85 197-305 133-219 (420)
452 PF01297 TroA: Periplasmic sol 20.7 5.8E+02 0.013 22.4 10.2 58 193-257 173-233 (256)
453 cd04743 NPD_PKS 2-Nitropropane 20.6 2.4E+02 0.0052 26.4 5.6 62 188-252 25-88 (320)
454 PRK11864 2-ketoisovalerate fer 20.6 6.9E+02 0.015 23.1 8.8 116 77-211 160-284 (300)
455 PRK06256 biotin synthase; Vali 20.6 6.7E+02 0.015 23.1 12.5 126 71-216 90-229 (336)
456 cd05007 SIS_Etherase N-acetylm 20.5 6.2E+02 0.013 22.6 11.0 55 152-208 108-162 (257)
457 cd01017 AdcA Metal binding pro 20.5 6.3E+02 0.014 22.7 8.7 52 200-258 204-255 (282)
458 COG4981 Enoyl reductase domain 20.5 2.9E+02 0.0063 28.0 6.3 161 79-257 50-224 (717)
459 cd02072 Glm_B12_BD B12 binding 20.4 4.5E+02 0.0098 21.0 13.6 103 75-199 13-117 (128)
460 smart00633 Glyco_10 Glycosyl h 20.1 3.4E+02 0.0073 24.0 6.5 78 176-253 135-225 (254)
461 cd01320 ADA Adenosine deaminas 20.1 6.7E+02 0.014 22.8 12.0 157 74-250 72-238 (325)
462 PF03599 CdhD: CO dehydrogenas 20.1 7.9E+02 0.017 23.7 9.2 88 162-258 69-156 (386)
463 PLN02623 pyruvate kinase 20.0 9.5E+02 0.021 24.6 11.2 77 72-173 276-352 (581)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.5e-57 Score=419.06 Aligned_cols=253 Identities=37% Similarity=0.594 Sum_probs=225.4
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHH
Q 021542 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~ 115 (311)
|++|+||+||++||+||||||.||.. +.+.+++++.++|++|+|+||||||||+.||.|.+ |++||+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999974 23345678889999999999999999999999987 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHH
Q 021542 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (311)
Q Consensus 116 aL~~~~~~~~R~~~~i~tK~~~~~--------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l 186 (311)
||++++. |++++|+||++... .+.++++|+++++.||+||||||||+||+||||. .+.++++++|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999863 69999999998753 3468999999999999999999999999999998 7789999999999
Q ss_pred HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCC
Q 021542 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (311)
Q Consensus 187 ~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~ 266 (311)
+++||||+||+||++.+++.++.+.+ .+++++|.+||++++..+. +++++|+++||++++||||++|+|++++.+
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998873 4799999999999986665 499999999999999999999999999988
Q ss_pred CCCCCCCCC---CCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 267 QNPPTGPRG---RIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 267 ~~~p~~~~~---~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
. +.+.+. ..+..+..++..+.+..++++|+++|+||+|+||+|
T Consensus 220 ~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALaw 265 (316)
T COG0667 220 G--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAW 265 (316)
T ss_pred C--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5 333332 234445667888889999999999999999999998
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=6.7e-56 Score=404.65 Aligned_cols=262 Identities=35% Similarity=0.538 Sum_probs=227.6
Q ss_pred ccccceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHH
Q 021542 32 VKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSET 111 (311)
Q Consensus 32 ~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~ 111 (311)
....|+++++|++|++||++|||||.+.. .... .++++|++++++|+|+|+||||||++||++.+ |.
T Consensus 8 ~~~~~~~~~lg~~gl~Vs~lglG~m~~~~------~~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------E~ 74 (336)
T KOG1575|consen 8 TELGMLRRKLGNSGLKVSPLGLGCMGWTT------FGGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------EE 74 (336)
T ss_pred chhcceeeeccCCCceecceeecceeeec------cccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------HH
Confidence 34489999999999999999999983322 2234 68899999999999999999999999999887 99
Q ss_pred HHHHHHHhccCCCCCCcEEEEecCCCCC-----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHH
Q 021542 112 LLGRFIKERKQRDPEVEVTVATKFAALP-----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGD 185 (311)
Q Consensus 112 ~lg~aL~~~~~~~~R~~~~i~tK~~~~~-----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~ 185 (311)
++|++|++++. +|++++|+||++... +..+...+...++.||++|+++||||||+||+|+ .+.++++++|.+
T Consensus 75 llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~ 152 (336)
T KOG1575|consen 75 LLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTD 152 (336)
T ss_pred HHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHH
Confidence 99999999864 389999999998743 5567899999999999999999999999999998 889999999999
Q ss_pred HHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCC
Q 021542 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYT 265 (311)
Q Consensus 186 l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~ 265 (311)
++++|||++||+|+++.++|.++..+++ ++|.++|++||++.+..++.++++.|++.||++++||||++|+|||+|.
T Consensus 153 lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~ 229 (336)
T KOG1575|consen 153 LVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYK 229 (336)
T ss_pred HHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcc
Confidence 9999999999999999999999988854 6799999999999999888899999999999999999999999999998
Q ss_pred CCC-CCCCCCCCCcch--HhH---hhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 266 PQN-PPTGPRGRIYTA--EYL---RNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 266 ~~~-~p~~~~~~~~~~--~~~---~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
..+ .|.+.....+.. ... +.+++.++.+.++|+++|+|++|+||+|
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALaw 281 (336)
T KOG1575|consen 230 LGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAW 281 (336)
T ss_pred cccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 643 333322111110 011 5688889999999999999999999998
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=6.5e-53 Score=396.35 Aligned_cols=259 Identities=30% Similarity=0.441 Sum_probs=216.7
Q ss_pred cceeeecCCCCcccccceecccc-cCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCC--CCCCCCCchHH
Q 021542 35 AEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSET 111 (311)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglG~~~-~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~--g~~~~~~~sE~ 111 (311)
.|+||+||+||++||+||||||+ +|.. .+.+++.++|++|++.||||||||+.||+ |.+ |+
T Consensus 12 ~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------E~ 75 (346)
T PRK09912 12 QMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------EE 75 (346)
T ss_pred CcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------HH
Confidence 59999999999999999999996 4421 24578899999999999999999999995 666 99
Q ss_pred HHHHHHHhccCCCCCCcEEEEecCCCC--C----CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHH
Q 021542 112 LLGRFIKERKQRDPEVEVTVATKFAAL--P----WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (311)
Q Consensus 112 ~lg~aL~~~~~~~~R~~~~i~tK~~~~--~----~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~ 184 (311)
.||++|++... .+|+++||+||++.. + .+.+++.+++++++||++||+||||+|++|+|+. .+.+++|++|+
T Consensus 76 ~lG~~l~~~~~-~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~ 154 (346)
T PRK09912 76 NFGRLLREDFA-AYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALA 154 (346)
T ss_pred HHHHHHHhccc-CCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHH
Confidence 99999986421 128999999998641 1 2357999999999999999999999999999987 56889999999
Q ss_pred HHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCC
Q 021542 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (311)
Q Consensus 185 ~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~ 264 (311)
+|+++|||++||+|||++++++++.+.+...+++++++|++||++++..+..+++++|+++||++++|+||++|+|++++
T Consensus 155 ~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~ 234 (346)
T PRK09912 155 HAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKY 234 (346)
T ss_pred HHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCC
Confidence 99999999999999999999998888777777789999999999998765446999999999999999999999999998
Q ss_pred CCCCCCCCCCC-------CCcchHhH-hhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 265 TPQNPPTGPRG-------RIYTAEYL-RNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 265 ~~~~~p~~~~~-------~~~~~~~~-~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
.+.. |.+.+. +.+.+... ++.+++++.|.++|+++|+|++|+||+|
T Consensus 235 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w 288 (346)
T PRK09912 235 LNGI-PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSW 288 (346)
T ss_pred CCCC-CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6532 221110 11222221 3456677889999999999999999998
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=9.9e-53 Score=390.87 Aligned_cols=256 Identities=26% Similarity=0.374 Sum_probs=213.0
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL 117 (311)
||+||+||++||+||||||++.+. ..+++++.++|++|+++|||+||||++||.|.+ |++||+||
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 588999999999999999973221 145688999999999999999999999998887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCc
Q 021542 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (311)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~-----~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ 191 (311)
+.... +|++++|+||++.. ..+.+++.+++++++||++|||||||+|++|||+. .+.+++|++|++|+++||
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 86431 28999999998531 12357999999999999999999999999999987 567899999999999999
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcC-CCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCC
Q 021542 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPP 270 (311)
Q Consensus 192 ir~iGvs~~~~~~~~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p 270 (311)
||+||+|||+.+++.++...+..++ ++|+++|++||++++...+.+++++|+++||++++|+||++|+|++++.... |
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~-~ 222 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGI-P 222 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCC-C
Confidence 9999999999999998877666666 5789999999999987544469999999999999999999999999986532 2
Q ss_pred CCCCCC-----Ccch----HhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 271 TGPRGR-----IYTA----EYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 271 ~~~~~~-----~~~~----~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
.+.+.. ++.. ......++.++.|+++|+++|+|++|+||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w 272 (317)
T TIGR01293 223 PYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAW 272 (317)
T ss_pred CcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 222211 1111 1122356677789999999999999999998
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.5e-53 Score=379.27 Aligned_cols=218 Identities=34% Similarity=0.563 Sum_probs=194.5
Q ss_pred cceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHH
Q 021542 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (311)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg 114 (311)
.+.+.+|++ |.+||.||||||.++.. +.+.+.+.+|++.|+|+||||..||| |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 355678888 88899999999998764 44899999999999999999999998 99999
Q ss_pred HHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--C-cHHHHHHHHHHHHcCc
Q 021542 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGL 191 (311)
Q Consensus 115 ~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~-~~~~~~~l~~l~~~G~ 191 (311)
++|++.. .+|+++||+||++. .+.+++.+.+++++||++||+||||||+||||.+. . ..++|++||+|+++||
T Consensus 59 ~aI~~s~--v~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESG--VPREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcC--CCHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 9999944 35999999999976 55788999999999999999999999999999752 2 5799999999999999
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCC
Q 021542 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (311)
Q Consensus 192 ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~ 271 (311)
||+||||||+.++++++++. .++.|++||++||++.++.+ ++++|+++||.+.|||||+.|..
T Consensus 135 ir~IGVSNF~~~~L~~l~~~---~~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~----------- 197 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSL---AKVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGK----------- 197 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHh---cCCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCcccccc-----------
Confidence 99999999999999999876 44789999999999999876 99999999999999999997531
Q ss_pred CCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
.+.++ .|.+||++||.|++|++|+|
T Consensus 198 -----l~~~~----------~l~~Ia~k~g~t~AQv~L~W 222 (280)
T COG0656 198 -----LLDNP----------VLAEIAKKYGKTPAQVALRW 222 (280)
T ss_pred -----cccCh----------HHHHHHHHhCCCHHHHHHHH
Confidence 22222 89999999999999999999
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.3e-52 Score=391.81 Aligned_cols=256 Identities=27% Similarity=0.423 Sum_probs=214.2
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCC-------CCCCCCCc
Q 021542 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (311)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~-------g~~~~~~~ 108 (311)
|+||+||+||++||+||||||.||.. .+++++.++|+.|++.||||||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998853 34689999999999999999999999984 444
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-----
Q 021542 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (311)
Q Consensus 109 sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~----------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~----- 173 (311)
|..||++|+... +|++++|+||++... .+.+++.+++++++||++||+||||+|++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998643 289999999985311 1367899999999999999999999999999864
Q ss_pred -------------CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC-CeeEeeecCCccccCccccChh
Q 021542 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (311)
Q Consensus 174 -------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~ll 239 (311)
.+..++|++|++|+++|||++||+|||+.+++.++...+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 24579999999999999999999999999999988776666554 588999999999987543 599
Q ss_pred hHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCC---cchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 240 AACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRI---YTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 240 ~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
++|+++||++++|+||++|+|++++.....|.+.+... +........+++++.|.++|+++|+|++|+||+|
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w 295 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAF 295 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999986554443322111 1111123456677899999999999999999998
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-50 Score=376.56 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=205.4
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL 117 (311)
||+||+||++||+||||||+||.. |+ ..+++++.++|++|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~~-----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--FG-----PVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--CC-----CCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999999864 32 356689999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC----CCcHHHHHHHHHHHHcCc
Q 021542 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (311)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~--~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~G~ 191 (311)
++.+. +|+++||+||++... ...+++.+++++++||++||+||||+|+||+|+. ...+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 87542 389999999997532 3568999999999999999999999999999974 234689999999999999
Q ss_pred cceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCC
Q 021542 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPT 271 (311)
Q Consensus 192 ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~ 271 (311)
||+||+|||+++++.++.+......+.+.++|+.||+.++..+ +++++|+++||++++|+||++|+|++++.+..++.
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~ 223 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPA 223 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCCCCCCCC
Confidence 9999999999998888766433222355567899998876443 59999999999999999999999998753211110
Q ss_pred CCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 272 GPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
.+...++++.++++|+++|+|++|+||+|
T Consensus 224 -----------~~~~~~~~~~l~~~a~~~~~s~aq~al~~ 252 (314)
T PLN02587 224 -----------PPELKSACAAAATHCKEKGKNISKLALQY 252 (314)
T ss_pred -----------CHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 12345666789999999999999999998
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.3e-48 Score=350.68 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=192.2
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL 117 (311)
+.+|.+ |.+||.||||||+. +.+++.+.++.|++.|+||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 577877 99999999999972 2388999999999999999999999999 99999999
Q ss_pred HhccCC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----------------CcHH
Q 021542 118 KERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (311)
Q Consensus 118 ~~~~~~--~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-----------------~~~~ 178 (311)
+..-.+ .+|+++||+||++. ..+.++.++.++++||++||+||+|+|++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 976422 27999999999975 34789999999999999999999999999998552 2457
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccccccc
Q 021542 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
+|++||++++.|++|+||||||+..++++++..+ .++|.++|+++||+.++.. ++++|+++||.+.|||||+.+
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~---ki~P~vnQvE~HP~~~Q~~---L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLA---KIKPAVNQVECHPYLQQKK---LVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcC---CCCCccceeeccCCcChHH---HHHHHhhCCcEEEEecCCCCC
Confidence 9999999999999999999999999999998776 4899999999999998765 999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 259 ALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 259 ~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
-- + . ..+.++ .+.+||++||+||+|++|||
T Consensus 214 ~~-~-----------~-~ll~~~----------~l~~iA~K~~kt~aQIlLrw 243 (300)
T KOG1577|consen 214 GR-G-----------S-DLLEDP----------VLKEIAKKYNKTPAQILLRW 243 (300)
T ss_pred CC-c-----------c-ccccCH----------HHHHHHHHhCCCHHHHHHHH
Confidence 31 0 0 223332 89999999999999999998
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.7e-47 Score=350.09 Aligned_cols=238 Identities=42% Similarity=0.680 Sum_probs=207.8
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL 117 (311)
+|+||+||++||+||||||.++.. | .+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 588999999999999999998764 2 35689999999999999999999999999887 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-C-cHHHHHHHHHHHHcCcc
Q 021542 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (311)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~---~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~-~~~~~~~l~~l~~~G~i 192 (311)
+..+ +|++++|+||++... ...+++.+++++++||++|++||||+|+||+|+.. . ..++|++|++++++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9875 289999999998642 22689999999999999999999999999999873 3 78999999999999999
Q ss_pred ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCC
Q 021542 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTG 272 (311)
Q Consensus 193 r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~ 272 (311)
|+||+|||+++.+.++++.+ ..+|+++|++||++++.... +++++|+++||++++|+||++|.|++++.....+..
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~ 218 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPE 218 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCCCCCCh
Confidence 99999999999999987654 36899999999999998764 599999999999999999999999876654332110
Q ss_pred CCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 273 PRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
......+..++++++.|++|+||+|
T Consensus 219 --------------~~~~~~~~~~~~~~~~s~~q~al~~ 243 (285)
T cd06660 219 --------------GDLLEALKEIAEKHGVTPAQVALRW 243 (285)
T ss_pred --------------hhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 0033479999999999999999998
No 10
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-46 Score=341.93 Aligned_cols=222 Identities=22% Similarity=0.335 Sum_probs=187.9
Q ss_pred eecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHH
Q 021542 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (311)
Q Consensus 39 r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~ 118 (311)
+.|+ |++||+||||||+||...+|+. ..+++++.++|++|++.||||||||+.||++.+ |+.+|++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 3454 8999999999999987533432 235688999999999999999999999999877 999999996
Q ss_pred hccCCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCC------CCCcHHHHHHHHH
Q 021542 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLGD 185 (311)
Q Consensus 119 ~~~~~~~R~~~~i~tK~~~~-------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~------~~~~~~~~~~l~~ 185 (311)
.. |+++||+||++.. +...+++.+++++++||++|||||||+|++|+++ ..+.+++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 52 7999999998642 2346799999999999999999999999988742 2346789999999
Q ss_pred HHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCC
Q 021542 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYT 265 (311)
Q Consensus 186 l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~ 265 (311)
|+++||||+||+|||+++++.++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++..
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~~~----- 220 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGFTP----- 220 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCCCh-----
Confidence 99999999999999999999988765 478999999999997643 599999999999999999974310
Q ss_pred CCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 266 PQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 266 ~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
+. .+.+.++|+++|+|++|+||+|
T Consensus 221 ------------~~----------~~~l~~ia~~~~~t~aq~al~w 244 (290)
T PRK10376 221 ------------LQ----------SSTLSDVAASLGATPMQVALAW 244 (290)
T ss_pred ------------hh----------hHHHHHHHHHhCCCHHHHHHHH
Confidence 00 1378999999999999999998
No 11
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.1e-46 Score=343.16 Aligned_cols=234 Identities=20% Similarity=0.236 Sum_probs=189.7
Q ss_pred CcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCC
Q 021542 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (311)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~ 124 (311)
+++||+||||||+||..+.|....+..++++++.++|+.|++.||||||||+.||. ||+++|++|++..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--------SE~~lG~al~~~~--- 70 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--------AETVLGQLIPRPV--- 70 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--------HHHHHhhhhccCC---
Confidence 67899999999999863111111123467899999999999999999999999974 4999999997521
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCc-HHHHHHHHHHHHcCccceEeecCCc
Q 021542 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~-~~~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
|++++|+||. .+.+++.+++++++||++||+||||+|++|+|+. .+. +++|++|++|+++||||+||+|||+
T Consensus 71 -~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 71 -PFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred -ceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 4679999986 3457899999999999999999999999999976 233 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH
Q 021542 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (311)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~ 281 (311)
++++.++... .+|+++|++||++++..+..+++++|+++||++++|+||++|+|++.... .+ ..
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~--~~-----~~---- 209 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR--VP-----AQ---- 209 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc--Cc-----cc----
Confidence 9988876432 58999999999999876534699999999999999999999999753110 01 01
Q ss_pred hHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 282 YLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 282 ~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
+......+..+.+++.++++|++|+||+|
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~s~aqlalaw 238 (292)
T PRK14863 210 -LKGASGRLSRVRRMIAEGRSDPLQAALGF 238 (292)
T ss_pred -hhhhhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11223445678888989999999999998
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.9e-46 Score=337.47 Aligned_cols=206 Identities=27% Similarity=0.437 Sum_probs=180.7
Q ss_pred cccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 021542 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (311)
Q Consensus 46 ~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~ 125 (311)
.+||.||||||+++. +++.+++++|++.|||+||||+.||+ |+.+|++|+..+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997642 67899999999999999999999996 9999999986532 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CCcHHHHHHHHHHHHcCccceEeecCCcH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~ 202 (311)
|+++||+||++. ...+++.+++++++||++||+||||+|++|+|++ .+.+++|++|++|+++||||+||+|||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999854 3477899999999999999999999999999975 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchH
Q 021542 203 KRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAE 281 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~ 281 (311)
++++++++. .+. +|+++|++||++.+.. +++++|+++||++++|+||++|.+.. .
T Consensus 134 ~~l~~~~~~---~~~~~~~~~Q~~~~~~~~~~---~ll~~~~~~gi~v~a~spl~~G~~~~-----------------~- 189 (267)
T PRK11172 134 ALMKQAIAA---VGAENIATNQIELSPYLQNR---KVVAFAKEHGIHVTSYMTLAYGKVLK-----------------D- 189 (267)
T ss_pred HHHHHHHHh---cCCCCCeEEeeecCCCCCcH---HHHHHHHHCCCEEEEECCCCCCcccC-----------------C-
Confidence 999998654 233 6899999999998752 59999999999999999999986421 1
Q ss_pred hHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 282 YLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 282 ~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
..|.++|+++|+|++|+||+|
T Consensus 190 ---------~~l~~~a~~~~~s~aqval~w 210 (267)
T PRK11172 190 ---------PVIARIAAKHNATPAQVILAW 210 (267)
T ss_pred ---------HHHHHHHHHhCCCHHHHHHHH
Confidence 168999999999999999998
No 13
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.1e-46 Score=341.37 Aligned_cols=234 Identities=35% Similarity=0.577 Sum_probs=192.2
Q ss_pred cceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 021542 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (311)
Q Consensus 50 ~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~ 129 (311)
+||||||++|.. ..+++++.++|+.|++.|||+||||+.||+|.+ |+++|++|+..+. +|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~~--~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSRV--PRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTSS--TGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------ccccccccccccc--ccccc
Confidence 589999998862 367899999999999999999999999988877 9999999999332 38999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CC-cHHHHHHHHHHHHcCccceEeecCCcHHH
Q 021542 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (311)
Q Consensus 130 ~i~tK~~---~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~-~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 204 (311)
+|+||+. ......+++.+++++++||++||+||||+|+||+|+. .. ..++|++|++|+++|+||+||+|||+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1225689999999999999999999999999999988 55 79999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHh
Q 021542 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLR 284 (311)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~ 284 (311)
++++ .+...++|+++|++||++++.... +++++|+++||++++|+|+++|+|++++....++........
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~------ 213 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRD------ 213 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSST------
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcccccccch------
Confidence 8888 333446899999999999555444 699999999999999999999999998876554322211111
Q ss_pred hHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 285 NLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 285 ~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
.++....+.++++++|+|++|+||+|
T Consensus 214 -~~~~~~~l~~~a~~~g~s~~q~al~~ 239 (283)
T PF00248_consen 214 -AQELADALRELAEEHGVSPAQLALRW 239 (283)
T ss_dssp -HGGGHHHHHHHHHHHTSSHHHHHHHH
T ss_pred -hhhhhhhhhhhhhhcccccchhhhhh
Confidence 33445589999999999999999998
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=8.2e-47 Score=326.35 Aligned_cols=237 Identities=22% Similarity=0.418 Sum_probs=212.0
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHH
Q 021542 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~ 115 (311)
|++.+|++.|+++|+|.+|+|++.. |+ .+..+..+.|+.|++.|||+||-|+.||++.- |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 6789999889999999999999865 44 34478999999999999999999999999776 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCC----------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHH
Q 021542 116 FIKERKQRDPEVEVTVATKFAAL----------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (311)
Q Consensus 116 aL~~~~~~~~R~~~~i~tK~~~~----------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~ 184 (311)
+|+..+.- |+++.|.||++.. .++.+.++|.+++|+||++|+|||+|+++||+||+ .+.+|+-+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987754 8999999999962 36789999999999999999999999999999999 78999999999
Q ss_pred HHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCC
Q 021542 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKY 264 (311)
Q Consensus 185 ~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~ 264 (311)
.|++.||||++|||||++.+++.+.+... .+.++||++.|+++.....++.+++|+++.|.+++||||++|.+
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~---- 216 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGL---- 216 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCcc----
Confidence 99999999999999999999999977632 46888999999999988888999999999999999999999843
Q ss_pred CCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcC-CChhHhhhcC
Q 021542 265 TPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS-KTSTQASTGY 311 (311)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g-~s~~q~al~w 311 (311)
|.. .++.+++..+|..+|+++| +|..+++++|
T Consensus 217 -------------F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiAW 249 (298)
T COG4989 217 -------------FLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIAW 249 (298)
T ss_pred -------------ccC--CcchHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 221 2345666779999999999 7999999998
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-44 Score=330.37 Aligned_cols=213 Identities=25% Similarity=0.416 Sum_probs=184.0
Q ss_pred eeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (311)
Q Consensus 38 ~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL 117 (311)
+..| ++|++||+||||||+++ ++++.++|++|++.|+||||||+.||+ |+.+|++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al 61 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKAL 61 (275)
T ss_pred eEEc-CCCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHHH
Confidence 4567 46999999999999753 378999999999999999999999986 99999999
Q ss_pred HhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--CcHHHHHHHHHHHHcCccceE
Q 021542 118 KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAV 195 (311)
Q Consensus 118 ~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~l~~l~~~G~ir~i 195 (311)
+..+. +|++++|+||++ ..+++.+++++++||++|++||||+|++|+|+.. ...++|++|++|+++|+||+|
T Consensus 62 ~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 62 KEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred HHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 97542 389999999984 3567899999999999999999999999999762 367999999999999999999
Q ss_pred eecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCC
Q 021542 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (311)
Q Consensus 196 Gvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~ 275 (311)
|+|||++++++++.. ..+++|.++|++||++.+.. +++++|+++||++++|+||++|.-
T Consensus 136 GvSn~~~~~l~~~~~---~~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~~--------------- 194 (275)
T PRK11565 136 GVCNFQIHHLQRLID---ETGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGGK--------------- 194 (275)
T ss_pred eeccCCHHHHHHHHH---hCCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCCc---------------
Confidence 999999999998854 34567999999999998753 599999999999999999997731
Q ss_pred CCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 276 RIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 276 ~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
..+.. +.|.++|++||+|++|+||+|
T Consensus 195 ~~~~~----------~~l~~ia~~~g~s~aq~aL~w 220 (275)
T PRK11565 195 GVFDQ----------KVIRDLADKYGKTPAQIVIRW 220 (275)
T ss_pred ccccC----------HHHHHHHHHhCCCHHHHHHHH
Confidence 01111 278999999999999999998
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-42 Score=302.88 Aligned_cols=246 Identities=22% Similarity=0.288 Sum_probs=209.2
Q ss_pred cccceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHH
Q 021542 33 KTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL 112 (311)
Q Consensus 33 ~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~ 112 (311)
.+.|.||.+|+||++||+||||+..++.. +.+.++++....|..|++.|||+|||++.||.+++ |++
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s------e~~ 85 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS------EEG 85 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh------HHH
Confidence 34899999999999999999999998876 44567788888888899999999999999999998 999
Q ss_pred HHHHHHhccCCCCCCcEEEEecCCCCC------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHH
Q 021542 113 LGRFIKERKQRDPEVEVTVATKFAALP------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFID 181 (311)
Q Consensus 113 lg~aL~~~~~~~~R~~~~i~tK~~~~~------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~ 181 (311)
+|.++++.| |+.+||+||++... ++++++.+|+++++||+||++||+|++++|+.++.+ ..|++.
T Consensus 86 lg~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp 161 (342)
T KOG1576|consen 86 LGLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLP 161 (342)
T ss_pred HHHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHH
Confidence 999999987 99999999999842 578999999999999999999999999999988742 579999
Q ss_pred HHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEee--ecCCccccCccccChhhHHHhcCceEEEcccccccc
Q 021542 182 GLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 182 ~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
+|++||++||||+||++.++.+.+.++++. .....+++- ..|++.+..-- ..+++.+++|++|+.-++++.|+
T Consensus 162 ~Le~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~AsalsmgL 236 (342)
T KOG1576|consen 162 ALEELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASALSMGL 236 (342)
T ss_pred HHHHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhhHHHHH
Confidence 999999999999999999999999998643 223466654 66666554433 37888899999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhhcC
Q 021542 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 260 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al~w 311 (311)
|+.+..++++|..+. ..+....-.++|++.|+.+..+|+.|
T Consensus 237 Lt~~gp~~wHPaS~E-----------lk~~a~~aa~~Cq~rnv~l~kLA~~Y 277 (342)
T KOG1576|consen 237 LTNQGPPPWHPASDE-----------LKEAAKAAAEYCQSRNVELGKLAMYY 277 (342)
T ss_pred hhcCCCCCCCCCCHH-----------HHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 999999888886432 33334456788899999999998865
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=6.9e-40 Score=297.73 Aligned_cols=229 Identities=22% Similarity=0.300 Sum_probs=198.2
Q ss_pred ceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHH
Q 021542 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 36 m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~ 115 (311)
|.||++|+||.++|.||||||++... |. +.+|++.+.++|++|++.|||+||||..|..|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998876 33 4578899999999999999999999999987777 999999
Q ss_pred HHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHHHHHHcC
Q 021542 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLGDAVEQG 190 (311)
Q Consensus 116 aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~~l~~~G 190 (311)
+|++.. |++++++||+..++ -.+++.+++-++++|++|++||+|+|+||..+... ..++++.+++++++|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999876 89999999998632 26789999999999999999999999999976511 224799999999999
Q ss_pred ccceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc-cChhhHHHhcCceEEEcccccccccCCCCCCCC
Q 021542 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (311)
Q Consensus 191 ~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (311)
|||++|+|.| +.+.+.+++.. .+++++|++||.++..... .+.+++|.++|++|+.++|+.+|-|..+.
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v---- 214 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV---- 214 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC----
Confidence 9999999999 56778888765 6899999999999976432 25899999999999999999999875422
Q ss_pred CCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcC--CChhHhhhcC
Q 021542 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS--KTSTQASTGY 311 (311)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g--~s~~q~al~w 311 (311)
|. +++++++++. .||+..++||
T Consensus 215 -----------P~----------~~~~l~~~~~~~~sP~~wa~R~ 238 (391)
T COG1453 215 -----------PE----------KLEELCRPASPKRSPAEWALRY 238 (391)
T ss_pred -----------CH----------HHHHHHHhcCCCCCcHHHHHHH
Confidence 11 7889998885 7899999987
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.18 E-value=3.1e-06 Score=73.90 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=97.9
Q ss_pred hHHHHHHHHHhcc-----CCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----CccceE------Eee----
Q 021542 109 SETLLGRFIKERK-----QRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELY------QLH---- 169 (311)
Q Consensus 109 sE~~lg~aL~~~~-----~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~----d~iDl~------~lh---- 169 (311)
+|++-+....... ....++++=+..|... -++.-+.+++.+++.++-+-. .-||.+ ++|
T Consensus 52 ~eelh~cvq~~lnEssq~~~d~~~E~si~vklf~--ndh~~e~in~~eeelmkVf~~lh~v~~id~~st~~v~~~~~~~l 129 (285)
T KOG3023|consen 52 NEELHICVQVPLNESSQKLDDKQEEYSIIVKLFF--NDHENEDINKREEELMKVFYNLHMVFGIDFVSTLVVSFPHITFL 129 (285)
T ss_pred hHHHHHHHHHhhccccccCcccccccceeeEEee--cccchhhhcHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccceee
Confidence 4777666654431 1114778888888865 445666677776666665421 111111 111
Q ss_pred -----------cCC--CC------CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 170 -----------WAG--IW------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 170 -----------~p~--~~------~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
.+. .. ...+.|+.||+++.+|+|..||+|.|+..++++++..++ +.|.++|++..-++
T Consensus 130 ~v~~lssv~ia~~sied~~n~~~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cC 206 (285)
T KOG3023|consen 130 KVSGLSSVNIAYDSIEDIPNQEIESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCC 206 (285)
T ss_pred cccCccchhccCChhhhcchhhHHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccc
Confidence 110 00 135789999999999999999999999999999988765 89999999999888
Q ss_pred cCccccChhhHHHhcCceEEEccc
Q 021542 231 RKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
.-+. ++.++|..++|.++..+-
T Consensus 207 vvPp--dLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 207 VVPP--DLQAFADRHDIQLLTHSD 228 (285)
T ss_pred cCCH--HHHHHhhhcceeeeecCC
Confidence 8776 599999999999988764
No 19
>PRK08392 hypothetical protein; Provisional
Probab=92.87 E-value=5.1 Score=34.98 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
....++++.|.+.|++.|=.+++..-... ..-+..+.+ ++...+. .+=++++..-+... ++. ....++.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~---~~~~~y~~~-i~~l~~~-~~i~il~GiE~~~~-----~~~-~~~~~~~ 82 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTP---SKFNAYINE-IRQWGEE-SEIVVLAGIEANIT-----PNG-VDITDDF 82 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccch---hhHHHHHHH-HHHHhhc-cCceEEEeEEeeec-----CCc-chhHHHH
Confidence 44678899999999999866666532110 000122211 2222211 01223333333211 111 2333344
Q ss_pred HHHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeecC-------C-cHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-------Y-SEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 155 L~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~-------~-~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
++. .||+ +..+| +.+....++..+.+.++.+.+.+.-+|=-. + ..+.++++++.+.+.|..+.+|- .
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-~ 158 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-R 158 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-C
Confidence 443 4555 56678 443333456778888888888876665221 1 23577888888888887777764 1
Q ss_pred CCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChh
Q 021542 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 226 ~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~ 305 (311)
+ +.+.. .+++.|++.|+.++. +.-+.. +..... .+...+++++.|.++.
T Consensus 159 ~----~~p~~-~~l~~~~~~G~~~~i-gSDAH~---------------------~~~vg~----~~~a~~~~~~~g~~~~ 207 (215)
T PRK08392 159 Y----RVPDL-EFIRECIKRGIKLTF-ASDAHR---------------------PEDVGN----VSWSLKVFKKAGGKKE 207 (215)
T ss_pred C----CCCCH-HHHHHHHHcCCEEEE-eCCCCC---------------------hHHCCc----HHHHHHHHHHcCCCHH
Confidence 2 12222 489999999987543 332321 111111 2256788889998887
Q ss_pred Hh
Q 021542 306 QA 307 (311)
Q Consensus 306 q~ 307 (311)
++
T Consensus 208 ~~ 209 (215)
T PRK08392 208 DL 209 (215)
T ss_pred He
Confidence 65
No 20
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=91.72 E-value=7.6 Score=36.16 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=90.2
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (311)
...+.++..++++.+.+.|++.|.-.. |.+.. ..-+-+.++......+-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll------~~~l~~li~~i~~~~~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTG--GEPLL------RKDLEDIIAALAALPGIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcC------ccCHHHHHHHHHhcCCCceEEEEcCchh---------HHH
Confidence 346678999999999999998886432 22111 1112233332211000136777777521 112
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcC
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~~~~~~~~~~~~~ 216 (311)
. -+.|...|.+.|- +.||..+. ...+.++++++.+++.|. |..+-+-+.+.+++.++++.++..+
T Consensus 110 ~-~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 R-AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred H-HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 2 2334455555442 44454432 236789999999999985 3345555677789999999888776
Q ss_pred CCeeEeeecCCccccCc--------cccChhhHHHhcCceEE
Q 021542 217 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLI 250 (311)
Q Consensus 217 ~~~~~~q~~~n~~~~~~--------~~~~ll~~~~~~gi~v~ 250 (311)
+.+. -++|.++.... ...++++..+++|+.+.
T Consensus 188 v~v~--~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 188 IQLR--FIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred CeEE--EEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 5433 33444433211 11146777777765443
No 21
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=91.40 E-value=9.8 Score=35.53 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|.-+ | |+-.-+..=++++.. +++... ..++.|+|-... +.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~---l~~i~itTNG~l---------l~~- 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPG---LEELSLTTNGSR---------LAR- 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCC---CceEEEEeChhH---------HHH-
Confidence 4667899999999999999887643 3 211000011222222 232220 125667776521 222
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
.-+.|+..|+++|. +.|+..++ ...+.+++.++.+++.|. |..+-+...+.+++.++++.+.+.++
T Consensus 106 ~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 106 FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 34556667777665 45555443 125789999999999985 33445556788999999999888776
Q ss_pred CeeE
Q 021542 218 PLAS 221 (311)
Q Consensus 218 ~~~~ 221 (311)
.+.+
T Consensus 185 ~~~~ 188 (329)
T PRK13361 185 DIAF 188 (329)
T ss_pred eEEE
Confidence 5443
No 22
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.24 E-value=4.7 Score=37.29 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
.++..+.++.+++.|++.|+.-- |.... .-.+.+ +++++.. + ++-|.-+.. ..++.+... .+-+
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~--g~~~~----~d~~~v-~~lr~~~---g--~~~l~vD~n---~~~~~~~A~-~~~~ 198 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKL--GGDLE----DDIERI-RAIREAA---P--DARLRVDAN---QGWTPEEAV-ELLR 198 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe--CCChh----hHHHHH-HHHHHhC---C--CCeEEEeCC---CCcCHHHHH-HHHH
Confidence 46677788888899999998632 22100 002222 2333321 1 445566653 224444332 2223
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccC
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (311)
.|+.+ ++.++..|-. .+-++.+.+|++.-.|. ..|-+-++.+.+.++++. ...+++|...+.+-.-
T Consensus 199 ~l~~~-----~l~~iEeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~GGi 265 (316)
T cd03319 199 ELAEL-----GVELIEQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTGGL 265 (316)
T ss_pred HHHhc-----CCCEEECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccCCH
Confidence 34444 4455555432 23467788888887775 455666788888888664 3577777775554321
Q ss_pred ccccChhhHHHhcCceEEEccccccc
Q 021542 233 PEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 233 ~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
.....+..+|+++||.++..+-+..+
T Consensus 266 ~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 266 TEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEECchhhH
Confidence 12224899999999999987655443
No 23
>PRK13796 GTPase YqeH; Provisional
Probab=91.00 E-value=4.6 Score=38.39 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=95.2
Q ss_pred ccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCC---CCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 021542 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (311)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~G---in~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~ 125 (311)
..+|--|..+-+ |+.......+.++..++++..-+.- +-.+|..+.-+.- ...+.+.+.+
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~~------ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVGN------ 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhCC------
Confidence 467777887665 4433233455577777777776544 4456765543321 2333333321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
+.-++|.+|.-..+.....+.+...++...+.+|....|++.+........+++++.+.++.+.+.+--+|.+|..-..+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 35788999986543334556677777777777887656888887766677889999998888888899999999976665
Q ss_pred HHHH
Q 021542 206 RNAY 209 (311)
Q Consensus 206 ~~~~ 209 (311)
-..+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 5443
No 24
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=88.69 E-value=11 Score=33.91 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+.++.+++.|++.|..=- |.. . ..+.-+=+++++.- ..++-|..... ..++.+...+-++ .
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKv--g~~-~----~~d~~~v~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~~-~ 151 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKV--GRD-P----ARDVAVVAALREAV----GDDAELRVDAN---RGWTPKQAIRALR-A 151 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEec--CCC-H----HHHHHHHHHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 5666777888899999887521 111 0 00112223344332 13444444442 2245544433332 3
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
|+.+ ++.++..|-+. +-++.+.+|++.-.+. ..|-+-++.+.+.++++. ..++++|+..+..-.-.
T Consensus 152 l~~~-----~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 152 LEDL-----GLDYVEQPLPA---DDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGLT 218 (265)
T ss_pred HHhc-----CCCEEECCCCc---ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCHH
Confidence 3443 44555655332 2357777788776554 556666788888887654 35777887766554321
Q ss_pred cccChhhHHHhcCceEEEccccccc
Q 021542 234 EENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
+-..+.+.|+++|+.++..+.+..+
T Consensus 219 ~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHcCCcEEecCccchH
Confidence 2224899999999999987665543
No 25
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=87.88 E-value=21 Score=33.19 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|..+ | |+-.-+..-.+++.. ++.... -.++.|+|-... +.+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~l---------l~~- 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGLL---------LAR- 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCchh---------HHH-
Confidence 4567999999999999999887642 3 211000111233332 232210 136778886521 111
Q ss_pred HHHHHHHhCCCccceEEeecCCC----------CCcHHHHHHHHHHHHcCcc----ceEeecCCcHHHHHHHHHHHHhcC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~----------~~~~~~~~~l~~l~~~G~i----r~iGvs~~~~~~~~~~~~~~~~~~ 216 (311)
.-+.|++.|.++|- +.++..++ ...+.+++.++.+++.|.- ..+-+.+.+.+++.++++.+.+.+
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERG 182 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 23446666665443 33444332 1357899999999999852 233445678889999999988877
Q ss_pred CCeeE
Q 021542 217 IPLAS 221 (311)
Q Consensus 217 ~~~~~ 221 (311)
+.+.+
T Consensus 183 v~~~~ 187 (334)
T TIGR02666 183 VTLRF 187 (334)
T ss_pred CeEEE
Confidence 65544
No 26
>PRK07945 hypothetical protein; Provisional
Probab=87.71 E-value=25 Score=33.08 Aligned_cols=162 Identities=12% Similarity=0.064 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHH---hccCCCCCC-cEEEEecCCCCCCCCCHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~---~~~~~~~R~-~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
....++++.|.+.|+..+=.+++...... ....+..-+-..+. ..++.. ++ ++++..-+...+ +.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~-~~~~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTV-ANGLSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccC-CCCCCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcchh---
Confidence 55778999999999998866666432100 00001222222221 111111 12 233333332221 1223323
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC------------CcHHHHHHHHHHHHhcCCC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~------------~~~~~~~~~~~~~~~~~~~ 218 (311)
++.|+. .||+ +..+|+....+.++..+.|.++.+.+++.-||=-. .....+.++++.+.+.+..
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~ 260 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTA 260 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCE
Confidence 333333 4665 67778864445566778888888888887777321 1112346666767777777
Q ss_pred eeEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 219 LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
+.+|--... ..+.. .+++.|++.|+.++
T Consensus 261 lEINt~~~r---~~P~~-~il~~a~e~G~~vt 288 (335)
T PRK07945 261 VEINSRPER---RDPPT-RLLRLALDAGCLFS 288 (335)
T ss_pred EEEeCCCCC---CCChH-HHHHHHHHcCCeEE
Confidence 777643322 22222 49999999999753
No 27
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=87.65 E-value=4.7 Score=36.23 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=35.6
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..+++|+..|...+...|...|.. .-..+.+....+.++.+.++|+++|+++
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL----------------TPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 367899999999887766443311 0123345667778888999999998754
No 28
>PRK08609 hypothetical protein; Provisional
Probab=87.44 E-value=19 Score=36.48 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred HHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHH---HHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF---IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 77 a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~a---L~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
..++++.|.+.|+.+|=.++++....- ....+...+-.. ++......+.=++++..-+... ++....-.++
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~-~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~-----~~g~~d~~~~ 424 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKV-ANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDIL-----PDGSLDYDDE 424 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccc-cCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeec-----CCcchhhcHH
Confidence 455999999999999987777632100 000113322222 2222211101134444333321 1222233333
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC------C--cHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~------~--~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
.|+. .||+ +.-+|++-..+.+++++.+.++.+.|.+.-||=-. + -...++++++.+.+.|..+.+|-
T Consensus 425 ~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa-- 499 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNA-- 499 (570)
T ss_pred HHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcC--
Confidence 5554 4666 77778764455678889999999999887666332 1 23556777777777776555543
Q ss_pred CCccccCccccChhhHHHhcCceEE
Q 021542 226 YSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 226 ~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
+.+..... ..++..|.+.|+.++
T Consensus 500 -~~~r~~~~-~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 500 -NPNRLDLS-AEHLKKAQEAGVKLA 522 (570)
T ss_pred -CccccCcc-HHHHHHHHHcCCEEE
Confidence 33322222 258999999999753
No 29
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.87 E-value=17 Score=34.20 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
.++..+.++.+.+.|++.|-.--..+...........+.+ +++++.- -.++.|..... ..++.+...+-
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v-~~ir~~~----g~~~~l~vDaN---~~~~~~~a~~~--- 208 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARV-RAVREAV----GPDVDLMVDAN---GRWDLAEAIRL--- 208 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHH-HHHHHhh----CCCCEEEEECC---CCCCHHHHHHH---
Confidence 4666777788889999988642211110000000002233 3334321 14555555553 23455443332
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccC
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (311)
+++|. ..++.+++.|-+. +-++.+.+|++.-.+. ..|-+-++++.+.++++. -.++++|+....+-.-
T Consensus 209 -~~~l~--~~~i~~iEqP~~~---~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 277 (357)
T cd03316 209 -ARALE--EYDLFWFEEPVPP---DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDVTKVGGI 277 (357)
T ss_pred -HHHhC--ccCCCeEcCCCCc---cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 23332 2355566666432 3567778888876564 555666788888888654 2477777775554321
Q ss_pred ccccChhhHHHhcCceEEEccc
Q 021542 233 PEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 233 ~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
.....+...|+++|+.++..+.
T Consensus 278 ~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 278 TEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHHcCCeEeccCC
Confidence 1222589999999999887654
No 30
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=84.18 E-value=21 Score=32.34 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
.+.+.+.....+.. .-|.|+||+-.= .+.....+.+...++.+++.-. .-|.+-+++++.++.+++.++ | ++.+
T Consensus 22 ~d~~~i~~~A~~~~-~~GAdiIDVg~~-~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~--G-~~iI 95 (261)
T PRK07535 22 KDAAFIQKLALKQA-EAGADYLDVNAG-TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAK--G-PPLI 95 (261)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCC-CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCC--C-CCEE
Confidence 34444554444433 568899998642 1111223345555566655422 348899999999999987633 2 3333
Q ss_pred eeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcC
Q 021542 222 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS 301 (311)
Q Consensus 222 ~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g 301 (311)
|-+. ......+ ++++.++++|+.++...--..|. | ...+...+.++++.+.|.++|
T Consensus 96 NsIs--~~~~~~~--~~~~l~~~~g~~vv~m~~~~~g~----------P----------~t~~~~~~~l~~~v~~a~~~G 151 (261)
T PRK07535 96 NSVS--AEGEKLE--VVLPLVKKYNAPVVALTMDDTGI----------P----------KDAEDRLAVAKELVEKADEYG 151 (261)
T ss_pred EeCC--CCCccCH--HHHHHHHHhCCCEEEEecCCCCC----------C----------CCHHHHHHHHHHHHHHHHHcC
Confidence 3322 2211112 48999999999999765332331 1 011122344556677788888
Q ss_pred CChhHhhh
Q 021542 302 KTSTQAST 309 (311)
Q Consensus 302 ~s~~q~al 309 (311)
+++.++.+
T Consensus 152 I~~~~Iil 159 (261)
T PRK07535 152 IPPEDIYI 159 (261)
T ss_pred CCHhHEEE
Confidence 88777653
No 31
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=84.16 E-value=29 Score=31.15 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CCc----HHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGN----EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~--~~~----~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ .-|.|.||+-. --+|+. .+. +.+...++.+++.-.+ -|.+.+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHh---
Confidence 45666666665554 56889999853 344543 222 3355566666655333 389999999999999876
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~ 294 (311)
..+.+|- .+..... .++++.++++|..++.+..-..|.- -... ..| +...+...+.+++..
T Consensus 96 --g~~iINd--is~~~~~---~~~~~l~~~~~~~vV~m~~~~~~~~----~~~~-------~~~-~~~~~~~~~~~~~~i 156 (258)
T cd00423 96 --GADIIND--VSGGRGD---PEMAPLAAEYGAPVVLMHMDGTPQT----MQNN-------PYY-ADVVDEVVEFLEERV 156 (258)
T ss_pred --CCCEEEe--CCCCCCC---hHHHHHHHHcCCCEEEECcCCCCcc----cccC-------CCc-chHHHHHHHHHHHHH
Confidence 2333332 2222211 2589999999999998764333210 0000 011 112233444455666
Q ss_pred HHHHhcCCChhHhhh
Q 021542 295 ELGENYSKTSTQAST 309 (311)
Q Consensus 295 ~iA~~~g~s~~q~al 309 (311)
+.+.+.|++..++.+
T Consensus 157 ~~~~~~Gi~~~~Iil 171 (258)
T cd00423 157 EAATEAGIPPEDIIL 171 (258)
T ss_pred HHHHHcCCCHHHEEE
Confidence 677788887776643
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=83.88 E-value=4.9 Score=34.63 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=93.7
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH--
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF-- 156 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~-- 156 (311)
++|..-++-|-+.+|-....| + +-..|+... + ++.-. ...+.+.+.+++++-+.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG----------~--LL~~L~~~k------~----v~g~G--vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG----------E--LLAYLKDEK------Q----VDGYG--VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch----------H--HHHHHHHhc------C----CeEEE--EecCHHHHHHHHHcCCCEE
Confidence 467777888999999743332 2 335555431 1 11100 23566666666655444
Q ss_pred ---------HhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 157 ---------RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 157 ---------~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
...-+.+|.+.|...-. ......+.|+++..=|+---|++.||.-|....-+-. .|-.|..-.++|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ-~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ-AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH-hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh---cCCCCCCCCCCCc
Confidence 34444444444433110 1122334466667778888899999988887755332 3445777888888
Q ss_pred ccccCccc----cChhhHHHhcCceEEEcccccccc
Q 021542 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 228 ~~~~~~~~----~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
-++...-. .+..++|++.||.|.-..++..+.
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 77764322 147889999999999999988764
No 33
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.23 E-value=2.8 Score=39.02 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=91.1
Q ss_pred cccccceeeecCCCCcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCC--eEECCcccCCCCCCCCCc
Q 021542 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (311)
Q Consensus 31 ~~~~~m~~r~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin--~~Dta~~Yg~g~~~~~~~ 108 (311)
|+..+|++..++ .|..|-.+|+|. +|+. .+++|-..|.+ .||++..- .
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~~k----k----- 218 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSSKK----K----- 218 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCchh----H-----
Confidence 667799999999 599999999998 6764 46677777766 56664211 1
Q ss_pred hHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHH
Q 021542 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (311)
Q Consensus 109 sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~ 188 (311)
|+ +++.+.. +.+++++|- ++ +.+++..++. .+.+.+--+ ....+-..++-||.
T Consensus 219 -ee----a~~~LGA----d~fv~~~~d--------~d-~~~~~~~~~d-g~~~~v~~~--------a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 219 -EE----AIKSLGA----DVFVDSTED--------PD-IMKAIMKTTD-GGIDTVSNL--------AEHALEPLLGLLKV 271 (360)
T ss_pred -HH----HHHhcCc----ceeEEecCC--------HH-HHHHHHHhhc-Ccceeeeec--------cccchHHHHHHhhc
Confidence 43 4566662 344444433 22 3334443332 222222212 22234456677899
Q ss_pred cCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceE
Q 021542 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (311)
Q Consensus 189 ~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v 249 (311)
.|++-.+|+-+.. ..+.-+. .-+-...+..|.+-...+.+|.+++|.+++|..
T Consensus 272 ~Gt~V~vg~p~~~-~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEKP-LKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCCc-ccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 9999999998862 2222211 112334445556655555567999999998753
No 34
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=83.04 E-value=13 Score=33.46 Aligned_cols=51 Identities=24% Similarity=0.170 Sum_probs=30.9
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
..++.|++.|+..+...+...+ + . .-.........+.++.+.++|+++|+.
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~-----~-------~----~~~~~~~~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVY-----Y-------E----QANNETRRRFIDGLKESVELASRASVT 153 (283)
T ss_pred HHHHHHHHcCCCEEEECCcccc-----c-------c----ccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 3678899999988875311000 0 0 001233455666777888889988874
No 35
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.85 E-value=35 Score=30.60 Aligned_cols=105 Identities=10% Similarity=-0.114 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
..++.++-.+..+-..+.++++.|-|=.+..+.. .+..+++++.++|+++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4478888888888888888999988888877765 56889999999999999664 44566677776666543
Q ss_pred CeeEeeecCCccccCc--cccChhhHHHh-cCceEEE
Q 021542 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIA 251 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~ll~~~~~-~gi~v~a 251 (311)
.+++++..-.++.... ...++++..++ .++.|++
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 4555543223333221 01135555555 4788876
No 36
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=82.00 E-value=31 Score=32.69 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=92.0
Q ss_pred ccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHC---CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCC
Q 021542 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN---GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (311)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~---Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~ 125 (311)
..+|--|..+-+ |+.......+.++..+++....+. =+-.+|..+..+.. ...+-+.+..
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~~------ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVGG------ 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhCC------
Confidence 567888887655 443223344567777777666532 22356765444332 1222233321
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
..-++|.+|+-..+.....+.+...+.+.++.++....|++.+..-.....+++++.|.++.+.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35688999996544444566777777777788876555777776655577889999998887777899999999976555
Q ss_pred HHHH
Q 021542 206 RNAY 209 (311)
Q Consensus 206 ~~~~ 209 (311)
-..+
T Consensus 171 iN~l 174 (360)
T TIGR03597 171 INKL 174 (360)
T ss_pred HHHH
Confidence 4443
No 37
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=81.92 E-value=33 Score=30.82 Aligned_cols=108 Identities=12% Similarity=0.021 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHH-HHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGL-GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l-~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
.+.+.+.+..++.++ -|.|+||+-. .|...+.++-+..+ ..+.+.-. .-|.+-+++++.++++++.+. | ..-
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~--G-~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ--G-KCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC--C-CcE
Confidence 566777777777765 4999999854 23333333333333 33332212 348899999999999977532 2 233
Q ss_pred EeeecCCccccCccccChhhHHHhcCceEEEccccccc
Q 021542 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 221 ~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
+| ..+....+.....+++.++++|..++.+..-..|
T Consensus 96 IN--sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 96 VN--SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EE--eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 33 2232221111124778999999999987654333
No 38
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.57 E-value=7.7 Score=37.23 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
.....++++|++.|++++||+.+... ..-+....+ +..+.+..-+|..| ..+.-.....+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~dP-Gi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFDP-GITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcCc-chHHHHHHHHHHHh
Confidence 34457999999999999999977654 222222222 35666666666433 23333334444433
Q ss_pred HHHhCCCccceEEeecCCC
Q 021542 155 LFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~ 173 (311)
-+ .+++||+|..+.|+.
T Consensus 142 ~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 142 FD--EIESIDIYVGGLGEH 158 (389)
T ss_pred hc--cccEEEEEEecCCCC
Confidence 33 588999999998876
No 39
>PRK05588 histidinol-phosphatase; Provisional
Probab=81.43 E-value=39 Score=30.14 Aligned_cols=170 Identities=10% Similarity=0.125 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCC---chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~---~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
....+.++.|.+.|+..+ .+++..-....... .-+..+ +.++.++ ..++++..-++ +.++ ....+
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~~ 83 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEEN 83 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHHH
Confidence 456789999999999998 77774221000000 001222 2223332 13454444443 2222 34566
Q ss_pred HHHHHHhCCCccceEEeecCCCC-----------CcHH----HHHHHHHHHH-cCccceEe---ec-------C------
Q 021542 152 KDSLFRLGLSSVELYQLHWAGIW-----------GNEG----FIDGLGDAVE-QGLVKAVG---VS-------N------ 199 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~~-----------~~~~----~~~~l~~l~~-~G~ir~iG---vs-------~------ 199 (311)
++.|++...||+ +..+|+.+.. +.++ .++.+.++.+ .|++.-|| +- .
T Consensus 84 ~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~ 162 (255)
T PRK05588 84 KELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYD 162 (255)
T ss_pred HHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccHH
Confidence 777887777777 7888974321 2223 3467777776 46554444 21 0
Q ss_pred CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
.-...++++++.+.+.+..+.+|--.+...........+++.|++.|+.++..+.-+.
T Consensus 163 ~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH 220 (255)
T PRK05588 163 EFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAH 220 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCC
Confidence 1135567777777777777777643221110010111378889999988655554443
No 40
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=81.03 E-value=45 Score=30.98 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+.+...++.|++.|=.-- +. .. +.-+=+++++.. |.-++.|=.-. .++.+..+ .
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~---~~~~l~vDaN~-----~~~~~~a~-~---- 191 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF---PQIPLVIDANE-----SYDLQDFP-R---- 191 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC---CCCcEEEECCC-----CCCHHHHH-H----
Confidence 5566677777889999874321 11 11 222234444432 11233333322 24454432 1
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
++.|. ..++.++..|- ..+-++.+.+|+++-.+. ..|-|.++.+.+..+++. --++++|.....+-.-.
T Consensus 192 ~~~l~--~~~~~~iEeP~---~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGit 261 (324)
T TIGR01928 192 LKELD--RYQLLYIEEPF---KIDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGLT 261 (324)
T ss_pred HHHHh--hCCCcEEECCC---ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCHH
Confidence 33332 24666666663 234467788888876664 778888899999888654 24777777765443211
Q ss_pred cccChhhHHHhcCceEEEccccccc
Q 021542 234 EENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
.-..+...|+++||.++..+.+..|
T Consensus 262 ~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 262 EVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHHHcCCeEEEcceEccc
Confidence 2224899999999999886665554
No 41
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.12 E-value=45 Score=30.06 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEE-eecCCC--CCcHHHH----HHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEGFI----DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~-lh~p~~--~~~~~~~----~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ +-|.|+||+-. --+|+. .+.++-| ..++.+++.-.+. |.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 35555555555444 45889999853 334544 2333333 3456666553443 89999999999999775
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCC-CCcchHhHhhHHHHHHHH
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG-RIYTAEYLRNLQPLLNRI 293 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~l~~l 293 (311)
| ...+| ..+..... .++++.++++|..++.+.. .|. |..... ..|.+ ........+++.
T Consensus 96 -G-~~iIN--disg~~~~---~~~~~l~~~~~~~vV~m~~--~g~----------p~~~~~~~~~~~-~~~~~~~~~~~~ 155 (257)
T cd00739 96 -G-ADIIN--DVSGGSDD---PAMLEVAAEYGAPLVLMHM--RGT----------PKTMQENPYYED-VVDEVLSFLEAR 155 (257)
T ss_pred -C-CCEEE--eCCCCCCC---hHHHHHHHHcCCCEEEECC--CCC----------CcccccCCCccc-HHHHHHHHHHHH
Confidence 2 22233 22333211 2589999999999999443 221 111000 11211 223334445566
Q ss_pred HHHHHhcCCChhHhhh
Q 021542 294 KELGENYSKTSTQAST 309 (311)
Q Consensus 294 ~~iA~~~g~s~~q~al 309 (311)
.+.|+++|++..++.+
T Consensus 156 i~~~~~~Gi~~~~Ii~ 171 (257)
T cd00739 156 LEAAESAGVARNRIIL 171 (257)
T ss_pred HHHHHHcCCCHHHEEE
Confidence 7788899988777643
No 42
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.31 E-value=20 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=29.1
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
..++.|++.|+..+....... +.. + -....+....+.++++.++|+++|+.
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~------~~~---~-------~~~~~~~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDV------YYE---E-------KSEETRQRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHhCCCEEEECCccc------ccc---c-------ccHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 477888888888876421100 000 0 01233455666677778888888764
No 43
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=78.00 E-value=27 Score=33.81 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-----CccceEEeecCCCCC-----cHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-----SSVELYQLHWAGIWG-----NEGF 179 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-----d~iDl~~lh~p~~~~-----~~~~ 179 (311)
|+-|-++|++.....+.+=++|.|=+... . +-..++...++++. .-+.++.++.|++.. ...+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~~---l----iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLTE---T----IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcchh---h----cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 77777888765433223456666666431 2 22233333344432 236688888887732 2334
Q ss_pred HHHHHHH-------HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 180 IDGLGDA-------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 180 ~~~l~~l-------~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
+++|-+. ++.++|.-||-++.....+.++.+..+..|+++.++
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 4444332 234668888877764444556655577777765553
No 44
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=77.70 E-value=56 Score=29.80 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|.- .| |+-.-+..-.+++. .+++.. -.++.|+|.... + ..
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv~-~l~~~g----~~~v~i~TNG~l---------l-~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEIIR-RIKDYG----IKDVSMTTNGIL---------L-EK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHHH-HHHhCC----CceEEEEcCchH---------H-HH
Confidence 456788899999999999988764 23 22110111122332 233322 136777776521 1 22
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHhcCC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
.-..|.+.|.+.|- +.++..++ ...+.+++.++.+++.|. |..+.+.+.+.+++.++++.+.+.++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 23345666665543 33454432 236789999999999984 23455555788899999998887775
Q ss_pred Cee
Q 021542 218 PLA 220 (311)
Q Consensus 218 ~~~ 220 (311)
.+.
T Consensus 179 ~~~ 181 (302)
T TIGR02668 179 ILQ 181 (302)
T ss_pred EEE
Confidence 433
No 45
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=77.64 E-value=37 Score=29.93 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCC
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRA 102 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~ 102 (311)
..+.++..++++.|.++|++-+=..++|-+|+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~ 47 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGR 47 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCc
Confidence 45679999999999999999887666766643
No 46
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=77.61 E-value=67 Score=30.63 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHH----HHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL----LGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~----lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 146 (311)
..+.++..++++.+.+.|++.|-. .| | |-. +-+.++.......-..+.|+|-...
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~---tG-G--------EPllr~dl~eli~~l~~~~gi~~i~itTNG~l--------- 147 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRL---TG-G--------EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT--------- 147 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEE---EC-C--------CCcchhhHHHHHHHHHhcCCCceEEEeeCcch---------
Confidence 356789999999999999987753 23 2 222 2233332211000124667765521
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCc--c--ceEeecCCcHHHHHHHHHHHH
Q 021542 147 VLAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~--i--r~iGvs~~~~~~~~~~~~~~~ 213 (311)
+.+.+ ..|+..|++.|- +.|+..++ ...+.+++.++.+++.|+ | ..+-+-+++.+++.++++.++
T Consensus 148 L~~~~-~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~ 225 (373)
T PLN02951 148 LSRKL-PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTR 225 (373)
T ss_pred HHHHH-HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHH
Confidence 11222 234455655433 23343332 224789999999999985 2 233445678889999999888
Q ss_pred hcCCCeeEeeecCCccc
Q 021542 214 KRGIPLASNQVNYSLIY 230 (311)
Q Consensus 214 ~~~~~~~~~q~~~n~~~ 230 (311)
+.++. +.-++|.++.
T Consensus 226 ~~gi~--vr~ie~mP~~ 240 (373)
T PLN02951 226 DKPIN--VRFIEFMPFD 240 (373)
T ss_pred hCCCe--EEEEEcccCC
Confidence 76643 3334444443
No 47
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=77.38 E-value=67 Score=31.52 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCcccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---C-ccceEEe
Q 021542 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---S-SVELYQL 168 (311)
Q Consensus 94 ta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d-~iDl~~l 168 (311)
..-.||. |+-|-++|++.....| .+=++|.|-+... .-.|.+..-+++.-++++- + .+.++.+
T Consensus 64 ~d~VfGG---------~~~L~~~I~~~~~~~~~p~~I~V~tTC~~e---iIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 64 DSAVFGG---------AKRVEEGVLVLARRYPDLRVIPIITTCSTE---IIGDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCchHh---hhccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 3445776 7788888877554332 2346777776431 2222333333332222211 1 4788999
Q ss_pred ecCCCCC--cHHHHHHHHHHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 169 HWAGIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 169 h~p~~~~--~~~~~~~l~~l~~--------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
|-|++.. ......+++.+.+ +++|.-||-.+ ++..+.++.+..+..|+++.+
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~ 193 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANI 193 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEE
Confidence 9998843 2223333333332 46688887443 356677777767777776544
No 48
>PRK06740 histidinol-phosphatase; Validated
Probab=77.29 E-value=31 Score=32.38 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=62.3
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-----CC-------------cHHHHHHHHHHHHcCccceEeec------CCc---
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGI-----WG-------------NEGFIDGLGDAVEQGLVKAVGVS------NYS--- 201 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~-----~~-------------~~~~~~~l~~l~~~G~ir~iGvs------~~~--- 201 (311)
..+++.|.....||+ +..+|+.+. .. .+...+.+.++.+.|++..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 345566666777777 777887531 01 12255778888899988777722 121
Q ss_pred ---HHHHHHHHHHHHhcCCCeeEeee-cCC--ccccCccccChhhHHHhcCceEEE
Q 021542 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 202 ---~~~~~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
...++++++.+.+.+..+.+|-. .+. ..+.-+.. .+++.|++.|+.++.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEE
Confidence 24677777778888877777753 221 11111111 488999999998643
No 49
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=76.84 E-value=44 Score=32.74 Aligned_cols=105 Identities=25% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeec-CCCCCcHHHHHHHHHHHHcCccceEeecCCcHHH----HHHHHHHHHhc
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR----LRNAYEKLKKR 215 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~-p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~----~~~~~~~~~~~ 215 (311)
..+.+.++..++..++ |+.++|++|.+.- |.. + |.+.+++|++..- .+.+. ...+.+.....
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT-~-------l~~~~~~g~l~~~----~~~~~~~~my~~~~~~L~~~ 292 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGT-P-------LAKAVEKGKLPPP----ATPAERADMYAYGVEFLAKA 292 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCC-H-------HHHHHHcCCCCCC----CCHHHHHHHHHHHHHHHHHC
Confidence 4678888888877664 8999999988764 321 1 2234556654310 01122 22223333333
Q ss_pred CCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCC
Q 021542 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~ 262 (311)
|+ .|.+.+-+.+...+..+....-..+..+++.++-+.|.+.+
T Consensus 293 Gy----~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~ 335 (449)
T PRK09058 293 GW----RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGG 335 (449)
T ss_pred CC----eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCC
Confidence 43 44444444443221124555556688889999988888765
No 50
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=76.47 E-value=11 Score=32.46 Aligned_cols=150 Identities=12% Similarity=-0.021 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
.|++.+.++++.+++.|++..|. | +..+..+++.....-.+.++++.-= ....+.++..+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i---~-----------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL---I-----------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH---H-----------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHH
Confidence 45799999999999999876653 3 4555566554331111233333111 13345566666
Q ss_pred HHHHHHhCCC----c-cceEEeecCCCCCcHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 152 KDSLFRLGLS----S-VELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 152 ~~sL~~L~~d----~-iDl~~lh~p~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
+.....+..+ . --+++.--++..-.-...-.-.-|+..|. |.++|. +-+.+.+.+.+.. .+|+++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHH-----cCCCEEEEc
Confidence 5555555421 1 11122222221111222333334566776 677774 4455666666443 467777777
Q ss_pred CCccccCccccChhhHHHhcCc
Q 021542 226 YSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 226 ~n~~~~~~~~~~ll~~~~~~gi 247 (311)
+........-.++++.+++.+.
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 6655543333358888888854
No 51
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.12 E-value=68 Score=30.16 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCC-CC-chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG-AI-NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~-~~-~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
++..+.+..+++.|++.|=.--....+...+ .. ..+.-.=+++++.- -.++-|..=.. ..++.+...
T Consensus 125 ~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~----g~~~~l~vDaN---~~~~~~~A~---- 193 (352)
T cd03325 125 SDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAV----GPDIDIGVDFH---GRVSKPMAK---- 193 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhh----CCCCEEEEECC---CCCCHHHHH----
Confidence 5556667777889999886532111000000 00 00222223444322 12333333331 124444322
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
+.++.|. ..++.++..|-. .+-++.+.+|+++.-+. ..|=|.++.+.+..+++. --++++|.....+--
T Consensus 194 ~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GG 263 (352)
T cd03325 194 DLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGG 263 (352)
T ss_pred HHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCC
Confidence 2333342 345666666643 22477888888886664 667777888898888653 246777777554432
Q ss_pred CccccChhhHHHhcCceEEEcc
Q 021542 232 KPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 232 ~~~~~~ll~~~~~~gi~v~a~s 253 (311)
-..-..+.+.|+++||.++..+
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 1122258999999999998665
No 52
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=75.16 E-value=63 Score=29.10 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceE-EeecCCC--CCcH-H---HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~-~lh~p~~--~~~~-~---~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+++.+.+..++.+ .-|.++||+- .--.|+. .+.+ | +...++.+++.-.+ -|.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHc---
Confidence 45666666666554 4588999993 2223443 2223 2 45555566655222 488999999999999764
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~ 294 (311)
| ...+|-+. ... . .++++.++++|..++.+.-- |. .... .....|.+ ........+++..
T Consensus 95 -G-~~iINsis--~~~--~--~~~~~l~~~~~~~vV~m~~~--g~-p~~~--------~~~~~~~~-~~~~~~~~~~~~i 154 (257)
T TIGR01496 95 -G-ADIINDVS--GGQ--D--PAMLEVAAEYGVPLVLMHMR--GT-PRTM--------QENPHYED-VVEEVLRFLEARA 154 (257)
T ss_pred -C-CCEEEECC--CCC--C--chhHHHHHHcCCcEEEEeCC--CC-Cccc--------ccCCCccc-HHHHHHHHHHHHH
Confidence 3 23333332 221 1 25899999999999985432 21 0000 00001111 1222333444556
Q ss_pred HHHHhcCCChhHhhh
Q 021542 295 ELGENYSKTSTQAST 309 (311)
Q Consensus 295 ~iA~~~g~s~~q~al 309 (311)
+.+.+.|+...++.|
T Consensus 155 ~~~~~~Gi~~~~iil 169 (257)
T TIGR01496 155 EELVAAGVAAERIIL 169 (257)
T ss_pred HHHHHcCCCHHHEEE
Confidence 667888887666543
No 53
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.45 E-value=15 Score=32.64 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcC-ccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~~~~~~~~~~~~~~~~ 219 (311)
++.+...+-++ .|..+|+++|++-..-.+.. .-..+.++.++++++.+ .++...++.-..+.++.+.+ .+ +
T Consensus 16 ~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~----~g--~ 88 (265)
T cd03174 16 FSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALE----AG--V 88 (265)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHh----CC--c
Confidence 55555555444 47788999888877655422 12356788888899888 56666666655555555533 23 4
Q ss_pred eEeeecCCccc--------cCc-----cccChhhHHHhcCceEEEcc
Q 021542 220 ASNQVNYSLIY--------RKP-----EENGVKAACDELGITLIAYC 253 (311)
Q Consensus 220 ~~~q~~~n~~~--------~~~-----~~~~ll~~~~~~gi~v~a~s 253 (311)
+.+++.+..-+ +.. .-...+++++++|+.+...-
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444443331 000 00146788899998876544
No 54
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=74.40 E-value=7.2 Score=35.47 Aligned_cols=93 Identities=23% Similarity=0.283 Sum_probs=63.5
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC---CcHHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
+|++..-+..|++.++.|--.. ..++++ ++..-+ .|=|+. +....++.+++..+.+++++.++-+.||+.+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~g-CpVi~s---l~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGTG-CPVIAS---LKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCCC-ChHHHh---hccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 3444444448899998874311 223322 333332 333333 4567788888888999999999999997765
Q ss_pred cCccccChhhHHHhcCceEEEcccccc
Q 021542 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
. ++.++|++.|+.+++.-|+..
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 4 499999999999999888775
No 55
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.37 E-value=52 Score=30.32 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=98.6
Q ss_pred CcccccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCC
Q 021542 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR 123 (311)
Q Consensus 45 g~~vs~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~ 123 (311)
|.+| .|.||++.-+. +.. ...+.++..+.+...++. |.+.||--.-|+.... ..+-..+-++|+.....
T Consensus 67 G~kV-iiS~GG~~g~~---~~~---~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 67 GGDV-IVSFGGASGTP---LAT---SCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKE 136 (294)
T ss_pred CCeE-EEEecCCCCCc---ccc---CcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHH
Confidence 4443 45788776322 111 223345555555555544 9999998666654211 11236677888776543
Q ss_pred CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCCC---C-cHHHHHHHHHHHHcCccceEee
Q 021542 124 DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIW---G-NEGFIDGLGDAVEQGLVKAVGV 197 (311)
Q Consensus 124 ~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~~---~-~~~~~~~l~~l~~~G~ir~iGv 197 (311)
. ..+.|+.-+...+...+.+.+ .+-+..+..| +|+|.++-+..-... + -..+..+.+.++.+=+--+=+
T Consensus 137 ~--p~l~vs~Tlp~~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~- 211 (294)
T cd06543 137 Y--PDLKISFTLPVLPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK- 211 (294)
T ss_pred C--CCcEEEEecCCCCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC-
Confidence 2 356666666544444444332 2333334444 466777666554321 2 245566666666552222212
Q ss_pred cCCcHHHHHHHHHHHHhcCCCeeEeeecCC--ccccCccccChhhHHHhcCceEEEccccccc
Q 021542 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 198 s~~~~~~~~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
++..++-..+ ++.|.+=++... ++...... .++++++++||+.+.|..+.+-
T Consensus 212 --~s~~~~~~~i------g~TpMiG~nD~~~e~ft~~da~-~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 212 --LSDAELWAMI------GVTPMIGVNDVGSEVFTLADAQ-TLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred --CCHHHHHHHc------cccccccccCCCCceeeHHHHH-HHHHHHHhCCCCeEeeeeccCC
Confidence 2223222221 234444333322 22222222 5999999999999999988763
No 56
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=73.99 E-value=60 Score=28.60 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
....+++..|.+.|+..|=.+++...... .+. ..+.+++ =+++...-+. ....+.+...+
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~~~~~~--- 75 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSKLRGLV--- 75 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHHHHHHH---
Confidence 67788999999999998866555422100 011 1111211 1333333331 23344433333
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC---cHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~---~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
++ -.+.+|++.+| |.. +++. ..+.+.+.|.-||--.. ....-..+++.+.+.++.+.+ +++.+..
T Consensus 76 -~~-~~~~~d~v~v~-~~~---~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEI---n~s~~~~ 143 (237)
T PRK00912 76 -GK-FRKKVDVLAVH-GGD---EKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEF---NLRDILK 143 (237)
T ss_pred -Hh-ccCcccEEEEe-CCC---HHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEE---EchHhhh
Confidence 33 22357888888 221 2222 35788888887775532 111123444556666665554 3433321
Q ss_pred Cc---------cccChhhHHHhcCceEEE
Q 021542 232 KP---------EENGVKAACDELGITLIA 251 (311)
Q Consensus 232 ~~---------~~~~ll~~~~~~gi~v~a 251 (311)
.. ....++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11 001489999999988865
No 57
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=73.73 E-value=44 Score=30.34 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCc-cceEeec---------------------CCcH
Q 021542 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVS---------------------NYSE 202 (311)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~-ir~iGvs---------------------~~~~ 202 (311)
..+...+++.-.+-+---|-.+.+-+| +.+.+.+.|..|.+.|- +-.+|+- +++.
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP---~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~ 78 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDP---DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTL 78 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCC---CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCH
Q ss_pred HHHHHHHHHHHhcCCC-eeEeeecCCccccCccccChhhHHHhcCc--eEEEcccccccccCCCCCCCCCCCCCCCCCcc
Q 021542 203 KRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGI--TLIAYCPIAQGALTGKYTPQNPPTGPRGRIYT 279 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~ll~~~~~~gi--~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~ 279 (311)
+...++++..+..+.. |.+.+..||++.+...+. .++.|++.|+ -+++=-|+-...
T Consensus 79 ~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~-F~~~~~~~GvdGlivpDLP~ee~~-------------------- 137 (265)
T COG0159 79 EDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEK-FLRRAKEAGVDGLLVPDLPPEESD-------------------- 137 (265)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHH-HHHHHHHcCCCEEEeCCCChHHHH--------------------
Q ss_pred hHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 280 AEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 280 ~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.+.+.|++||+.+
T Consensus 138 ------------~~~~~~~~~gi~~ 150 (265)
T COG0159 138 ------------ELLKAAEKHGIDP 150 (265)
T ss_pred ------------HHHHHHHHcCCcE
No 58
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.27 E-value=53 Score=28.76 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
.+.++..++++.-.+.||..|+.....-... ..+.+.+..+... . .-+.+.+ ....+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~----~--~~~~~~~-----~~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALP----N--ARLQALC-----RANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHH----S--SEEEEEE-----ESCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhc----c--cccceee-----eehHHHHHHHH
Confidence 4558888899998899999999982222211 1445555554443 1 2222222 13455566666
Q ss_pred HHHHHHhCCCccceEEeecCCC------CC----cHHHHHHHHHHHHcCccceEeecC---CcHHHHHHHHHHHHhcCC
Q 021542 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~------~~----~~~~~~~l~~l~~~G~ir~iGvs~---~~~~~~~~~~~~~~~~~~ 217 (311)
+.. +..|.+.+.++.--++-. .+ .+.+.+.++.+++.|....+++-. ++++.+.++.+.+.+.+.
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 533 466777666554322200 11 334556666667778777777643 456666666665555443
No 59
>PRK14017 galactonate dehydratase; Provisional
Probab=72.80 E-value=68 Score=30.55 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=56.8
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
+++.++..|-. .+-++.+.+|++...+. ..|=|-++.+.+..+++. --++++|...+.+---..-..+.++
T Consensus 203 ~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~~~GGit~~~~ia~~ 274 (382)
T PRK14017 203 YRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLSHAGGITECRKIAAM 274 (382)
T ss_pred cCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCccccCCHHHHHHHHHH
Confidence 56666666632 12257788888887665 677788888888888664 2467777776554321112248999
Q ss_pred HHhcCceEEEccc
Q 021542 242 CDELGITLIAYCP 254 (311)
Q Consensus 242 ~~~~gi~v~a~s~ 254 (311)
|+++||.+...+.
T Consensus 275 A~~~gi~~~~h~~ 287 (382)
T PRK14017 275 AEAYDVALAPHCP 287 (382)
T ss_pred HHHcCCeEeecCC
Confidence 9999999987754
No 60
>PRK00208 thiG thiazole synthase; Reviewed
Probab=72.77 E-value=72 Score=28.69 Aligned_cols=106 Identities=10% Similarity=-0.117 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
.-++.++..+..+-..+-++++.|=|=.+.++.. .+..+++++.++|+++|.+- +=+++-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 4477888888888888888999888877777665 56889999999999999665 44566677776666543
Q ss_pred CeeEeeecCCccccCc--cccChhhHHHh-cCceEEEc
Q 021542 218 PLASNQVNYSLIYRKP--EENGVKAACDE-LGITLIAY 252 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~--~~~~ll~~~~~-~gi~v~a~ 252 (311)
.+++++..-.++-... ...++++...+ .++.|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 4555533223333221 01135666666 47888773
No 61
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=72.77 E-value=82 Score=29.32 Aligned_cols=136 Identities=18% Similarity=0.078 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
.+.++..+++++..+. ||+.+--+. |.+-. .+...+.+.++..........+-|.|+... ..+..+...
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~----~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~e 188 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLV----LSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTPA 188 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCccc----CCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCHH
Confidence 3557788888877655 887553211 22110 112333333333221101234567777632 223334444
Q ss_pred HHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCccce----E--eecCCcHHHHHHHHHHHHhcCCCee
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKA----V--GVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~----i--Gvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
+-+.|++.|.. ..+.+|.... .-.++++++++.|++.|..-. + |+ |.+.+.+.++.+.+.+.++.+-
T Consensus 189 ll~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 189 LIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred HHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeE
Confidence 44566666632 3577777543 225789999999999995221 1 33 5778888888887777776443
No 62
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=72.51 E-value=14 Score=32.96 Aligned_cols=169 Identities=10% Similarity=-0.005 Sum_probs=88.1
Q ss_pred ccceecccccCCCCCCCCCcCChhhHHHHHHHHHHHHH-CCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCC
Q 021542 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV 127 (311)
Q Consensus 49 s~lglG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~-~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~ 127 (311)
|+|-+||..+.+. +++..|++ .|...+=.|=---+... ...+.-+-+.| +++
T Consensus 9 SRL~lGTgky~s~-----------------~~m~~ai~aSg~evvTvalRR~~~~~---~~~~~~~~~~i-------~~~ 61 (247)
T PF05690_consen 9 SRLILGTGKYPSP-----------------EVMREAIEASGAEVVTVALRRVNLGS---KPGGDNILDYI-------DRS 61 (247)
T ss_dssp -SEEEE-STSSSH-----------------HHHHHHHHHTT-SEEEEECCGSTTTS----TTCHHCCCCT-------TCC
T ss_pred cceEEecCCCCCH-----------------HHHHHHHHHhCCcEEEEEEecccCCC---CCCCccHHHHh-------ccc
Confidence 6889999876543 35555654 37776654422222110 00011221222 234
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 128 ~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
++.+--... .-++.++-.+..+-..+.++++.|-|=.+..+.. .++.+++++-+.|+++|-+- +=-++-++-..
T Consensus 62 ~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~V-lPY~~~D~v~a 137 (247)
T PF05690_consen 62 GYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLA 137 (247)
T ss_dssp TSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EE-EEEE-S-HHHH
T ss_pred CCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEE-eecCCCCHHHH
Confidence 554443332 3478888888888888889999888777766655 56889999999999999653 22334444444
Q ss_pred HHHHHHHHhcCCCeeEeeecCCccccCccc---cChhhHHHhcCceEEEccc
Q 021542 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~ll~~~~~~gi~v~a~s~ 254 (311)
+++.+ ....+++.--+|+-....- .-+--.+++.+|.++.-.-
T Consensus 138 krL~d------~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAG 183 (247)
T PF05690_consen 138 KRLED------AGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAG 183 (247)
T ss_dssp HHHHH------TT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES-
T ss_pred HHHHH------CCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCC
Confidence 55543 2456666665665542210 0134446666888887443
No 63
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=72.16 E-value=71 Score=29.93 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=87.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEecCCCCCCCCCHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSV 147 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~---~R~~~~i~tK~~~~~~~~~~~~i 147 (311)
..+.|+...+++.|.+.|++=|=-+ |. |-.+-+-|....... .-.++-++|-. ..
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VL 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcccceEEEecch----------hh
Confidence 3467999999999999999876432 32 444433332211100 02567777776 35
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCc----cceEeecCCcHHHHHHHHHHHHh
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~----ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.......|+.-|.+.|.+ .||..|+ .....+++.+++.++.|. |..+=+.+.+..++..+++++..
T Consensus 100 L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 100 LARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Confidence 566677788888877763 4555443 125789999999999986 45677778899999999999988
Q ss_pred cCCCeeE
Q 021542 215 RGIPLAS 221 (311)
Q Consensus 215 ~~~~~~~ 221 (311)
.+..+.+
T Consensus 179 ~~~~lrf 185 (322)
T COG2896 179 RGAQLRF 185 (322)
T ss_pred cCCceEE
Confidence 8765444
No 64
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=71.98 E-value=89 Score=30.04 Aligned_cols=105 Identities=23% Similarity=0.166 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|++.....+.+=++|.|-+... .-.+.+...+++.-++. .+.++.+|-|.+.. .+.++++|-
T Consensus 71 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~~---~iGdDi~~v~~~~~~~~---~~~vi~v~t~gf~g~~~~G~~~a~~~l~ 144 (410)
T cd01968 71 EKKLYKAILEIIERYHPKAVFVYSTCVVA---LIGDDIDAVCKTASEKF---GIPVIPVHSPGFVGNKNLGNKLACEALL 144 (410)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCchh---hhccCHHHHHHHHHHhh---CCCEEEEECCCcccChhHHHHHHHHHHH
Confidence 88888888765443334567777766432 22223333333332333 36789999887632 233454544
Q ss_pred HHHH---------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 185 DAVE---------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 ~l~~---------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+... ++.|.-||-.++. ..+.++.+..+..|+++.+
T Consensus 145 ~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 145 DHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 3331 4678888855443 3345555556677776554
No 65
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=71.98 E-value=90 Score=29.47 Aligned_cols=145 Identities=12% Similarity=0.011 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+.++.+++.|++.|=.=- .+.+ +++++.- -.++.|..-.. ..++.+...+ .
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv-------------~~~v-~avre~~----G~~~~l~vDaN---~~w~~~~A~~----~ 182 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL-------------PKLF-EAVREKF----GFEFHLLHDVH---HRLTPNQAAR----F 182 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH-------------HHHH-HHHHhcc----CCCceEEEECC---CCCCHHHHHH----H
Confidence 5566677777888998774200 1122 2333321 13444443331 2245543322 2
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
++.|. .+++.++..|-+ .+-++.+.+|++...+. ..|-+-++...+..+++. -.++++|.....+-.--
T Consensus 183 ~~~l~--~~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGit 252 (361)
T cd03322 183 GKDVE--PYRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGIT 252 (361)
T ss_pred HHHhh--hcCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCHH
Confidence 23332 357777777643 23377788888887775 777888888998888764 34777777765543211
Q ss_pred cccChhhHHHhcCceEEEccc
Q 021542 234 EENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s~ 254 (311)
+-..+.+.|+++||.+...+.
T Consensus 253 ~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 253 PARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHHHHHcCCeeeccCC
Confidence 222589999999999987643
No 66
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.90 E-value=45 Score=31.38 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+.+...++.|++.|=.=-....... +.-.=+++++.. -.++.|..-.. ..++.+...+.++ .
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~------d~~~v~air~~~----g~~~~l~vDaN---~~~~~~~A~~~~~-~ 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADE------DLAVVRSIRQAV----GDGVGLMVDYN---QSLTVPEAIERGQ-A 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHh------HHHHHHHHHHhh----CCCCEEEEeCC---CCcCHHHHHHHHH-H
Confidence 45555666667788876643111111100 222223444432 13444444442 2355554333332 2
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
|+. .++.++..|-.. +-++.+.+|++.--| -..|-+.++.+.+..+++. -.++++|...+.+----
T Consensus 209 l~~-----~~i~~iEeP~~~---~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQ-----EGLTWIEEPTLQ---HDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHc-----CCCCEEECCCCC---cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 233 355666666432 245667777777544 3567777888888888664 24777777765543211
Q ss_pred cccChhhHHHhcCceEEEcc
Q 021542 234 EENGVKAACDELGITLIAYC 253 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s 253 (311)
+...+.++|+.+|+.++...
T Consensus 276 ~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 276 GWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 22248899999999986543
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.79 E-value=12 Score=31.54 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCCeeEeeecCCccccCc-----c---------ccChhhHHHhcCceEEEcccccccccCCCCCCCC
Q 021542 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-----E---------ENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~-----~---------~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (311)
..++++.+.+++.++.+..+....+...... . -...++.|++.|+..+...+-..+..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~-------- 98 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG-------- 98 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccc--------
Confidence 3566676777778877655544444444211 0 01478899999999887665421000
Q ss_pred CCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.........+...+.++.+.++|+++|+++
T Consensus 99 ------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 99 ------PEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp ------TTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred ------cCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 012233556777888889999999999753
No 68
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=71.71 E-value=58 Score=30.45 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=54.9
Q ss_pred HHHHhCCCccceEEee-cCCC--CCcHHHHHHHHHHHHcCcc-ceEeecCC---cHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 154 SLFRLGLSSVELYQLH-WAGI--WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh-~p~~--~~~~~~~~~l~~l~~~G~i-r~iGvs~~---~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
.-+.+|.|+||+-+.- .|+. ...++....++...+.=.+ -.|..|.. +++.+++.++.++.. ++-++-...
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat~ 161 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAEE 161 (319)
T ss_pred HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECCH
Confidence 3457888888876532 2432 1234444444544433233 22555533 788899988775422 344333321
Q ss_pred CccccCccccChhhHHHhcCceEEEccccc
Q 021542 227 SLIYRKPEENGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 227 n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~ 256 (311)
. + .+ .+.+.|+++|..+++.+|..
T Consensus 162 e----n-~~-~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 162 D----N-YK-KIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H----H-HH-HHHHHHHHhCCeEEEEcHHH
Confidence 1 1 22 49999999999999988644
No 69
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=71.29 E-value=70 Score=28.55 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=47.9
Q ss_pred HHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 154 SLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
.|+.+| +|.+.+|..+. ....--|+.+.++++.-.+.-|...+. +++.+.+++.. . ..+.+.+.--+..
T Consensus 163 ~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~---g--~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK---G--KADAALAASVFHY 234 (254)
T ss_pred HHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---C--CcceeeEhHHHhC
Confidence 334555 56666776544 112223566666676656666666654 66788877553 1 1333322211122
Q ss_pred cCccccChhhHHHhcCceE
Q 021542 231 RKPEENGVKAACDELGITL 249 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v 249 (311)
......++.+.|+++||.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 2222225889999999864
No 70
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.12 E-value=94 Score=29.29 Aligned_cols=85 Identities=12% Similarity=-0.013 Sum_probs=55.0
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.++.++..|-+ .+-++.+.+|+++..|. ..|-+-++.+.+.++++. -.++++|+....+-.-..-..+..+
T Consensus 214 ~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~ 285 (365)
T cd03318 214 AGVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAI 285 (365)
T ss_pred cCcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHH
Confidence 34556666532 23467788888876664 667777788888888764 2466777665444321122248899
Q ss_pred HHhcCceEEEcccc
Q 021542 242 CDELGITLIAYCPI 255 (311)
Q Consensus 242 ~~~~gi~v~a~s~l 255 (311)
|+++||.++..+..
T Consensus 286 a~~~gi~~~~~~~~ 299 (365)
T cd03318 286 AEAAGIALYGGTML 299 (365)
T ss_pred HHHcCCceeecCcc
Confidence 99999998865433
No 71
>PRK07328 histidinol-phosphatase; Provisional
Probab=70.71 E-value=81 Score=28.38 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCC----CCCCC--chHHHHHHHH---HhccCCCCCCcEEEEecCCCCCCCCCHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRA----SFGAI--NSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQ 145 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~----~~~~~--~sE~~lg~aL---~~~~~~~~R~~~~i~tK~~~~~~~~~~~ 145 (311)
....++++.|.+.|+..+=.+++..... ..... -+..-+-..+ +...+..++=++++..-+... +
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-----~- 91 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-----P- 91 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----C-
Confidence 3466889999999999886555533200 00000 0011111221 111111012244555444332 1
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC--C------------CcHHHH----HHHHHHHHcCccceEeecCC-------
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGI--W------------GNEGFI----DGLGDAVEQGLVKAVGVSNY------- 200 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~------------~~~~~~----~~l~~l~~~G~ir~iGvs~~------- 200 (311)
.....+++.|++...||+ +..+|+.+. . +.++++ +.+.++.+.|.+.-||=-+.
T Consensus 92 ~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~ 170 (269)
T PRK07328 92 GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHR 170 (269)
T ss_pred CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCC
Confidence 133555566777677777 777897542 1 112233 35777788888776662221
Q ss_pred ----cHHHHHHHHHHHHhcCCCeeEeeecC--CccccCccccChhhHHHhcCceEE
Q 021542 201 ----SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 201 ----~~~~~~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
....++++++.+.+.+..+.+|-..+ ..-+..+. ..+++.|++.|+.++
T Consensus 171 ~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~-~~il~~~~~~g~~it 225 (269)
T PRK07328 171 PREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPS-PALLRACRERGIPVV 225 (269)
T ss_pred CchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCC-HHHHHHHHHcCCCEE
Confidence 12445777777888887777764322 11111111 148999999998754
No 72
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=70.68 E-value=50 Score=32.11 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCCCCC-----cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lh~p~~~~-----~~~~~~~l 183 (311)
|+-|-++|++..+..+.+=++|.|-+.. ..-.+.+...+++.-++... ..+.++.++-|++.. .+.++++|
T Consensus 70 ~~~L~~ai~~~~~~~~p~~I~v~ttC~~---~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al 146 (435)
T cd01974 70 QNNLIDGLKNAYAVYKPDMIAVSTTCMA---EVIGDDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGI 146 (435)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCchH---hhhhccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHH
Confidence 7888888876554332345666666632 12223333333332223211 147899999887632 23344444
Q ss_pred HH-HHH-------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 184 GD-AVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~-l~~-------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
-+ +.. .++|.-||-.+...+.+.++.+..+..|+++.
T Consensus 147 ~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 147 LTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYT 191 (435)
T ss_pred HHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEE
Confidence 32 222 33466665333222225666666777777664
No 73
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=70.62 E-value=79 Score=29.60 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRAS-FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~-~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
.++..+.++.+++.|++.|=.--..+.... .+.....+.+ +++++.- -.++-|..-.. ..++.+...+
T Consensus 121 ~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~----g~~~~l~vDan---~~~~~~~A~~--- 189 (341)
T cd03327 121 LDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAV----GYDVDLMLDCY---MSWNLNYAIK--- 189 (341)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHh----CCCCcEEEECC---CCCCHHHHHH---
Confidence 355667778888999998864211111000 0000112223 2333321 02333332221 2245544332
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
.+++|. ..|+.++..|-+ .+-++.+.+|+++..|. ..|=+.++.+.+.++++. -.++++|...+..--
T Consensus 190 -~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~GG 258 (341)
T cd03327 190 -MARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVGG 258 (341)
T ss_pred -HHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccCC
Confidence 223332 346666666543 23466777788887775 777778888988888664 347777777655432
Q ss_pred CccccChhhHHHhcCceEEEcc
Q 021542 232 KPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 232 ~~~~~~ll~~~~~~gi~v~a~s 253 (311)
-.+-..+.+.|+++|+.+...+
T Consensus 259 it~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 259 ITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHHHHHHHHHHHcCCeecccc
Confidence 2222258999999999988764
No 74
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=70.46 E-value=74 Score=31.06 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------cHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~ 182 (311)
|+-|-++|++..+..++ +=++|.+=+.. ..-.+.+...+++.-++++ +.++.+|-|++.. ...+.++
T Consensus 102 ~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 102 EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQSKGHHIANIA 175 (443)
T ss_pred HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccchHHHHHHHH
Confidence 77888888765544333 55667766642 1223334444444333443 7899999988733 1222332
Q ss_pred -HHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 183 -l~~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
++.+. +.++|.-||-.++ +..++++.+..+..|+++.+
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVVA 222 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEEE
Confidence 33443 2467888886555 34455666667777776654
No 75
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=69.68 E-value=81 Score=29.69 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
.++..+-...+++.|++.|=.-- |... ....+.+ +++++.-- +++-|..-.. ..++.+...+-+ +
T Consensus 139 ~e~~~~~a~~~~~~Gf~~~Kikv--g~~~----~~d~~~v-~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~-~ 203 (352)
T cd03328 139 DDRLREQLSGWVAQGIPRVKMKI--GRDP----RRDPDRV-AAARRAIG----PDAELFVDAN---GAYSRKQALALA-R 203 (352)
T ss_pred HHHHHHHHHHHHHCCCCEEEeec--CCCH----HHHHHHH-HHHHHHcC----CCCeEEEECC---CCCCHHHHHHHH-H
Confidence 35555666777789999875311 2110 0012223 34443220 2333332221 124554433222 2
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc--Ccc-ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
.|+. +++.++..|-+ .+-++.+.+|+++ -.| -..|-+-++.+.+.++++. --.+++|....-+-
T Consensus 204 ~l~~-----~~~~~~EeP~~---~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~G 270 (352)
T cd03328 204 AFAD-----EGVTWFEEPVS---SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRCG 270 (352)
T ss_pred HHHH-----hCcchhhCCCC---hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 2333 45555555532 2346777888887 333 3677788899999988764 34778887766543
Q ss_pred cCccccChhhHHHhcCceEEEcc
Q 021542 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v~a~s 253 (311)
---+...+.++|+.+|+.+...+
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 21122258999999999998764
No 76
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=68.57 E-value=78 Score=29.45 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=51.7
Q ss_pred cceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecC----CcHHHH-HHHHHHHHhcCCCeeEeeecCCccc-cCcc
Q 021542 163 VELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRL-RNAYEKLKKRGIPLASNQVNYSLIY-RKPE 234 (311)
Q Consensus 163 iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~~-~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~ 234 (311)
|.-+.|-.-|+ .+...+.+.++.+++-|.|..|.+.+ .++..+ .++++..++.+.. ..+-+..|-.. ....
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h~~el~~~ 215 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANHARELTAE 215 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCChhhcCHH
Confidence 44455655555 23467788888888888776555543 122221 2333333444433 22333333111 0111
Q ss_pred ccChhhHHHhcCceEEEcccccccc
Q 021542 235 ENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 235 ~~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
-...++.+++.||.+...+++..|.
T Consensus 216 ~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 216 ARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 1146777888999999988888774
No 77
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=68.50 E-value=1.2e+02 Score=30.22 Aligned_cols=105 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCCCCCc--HHHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWGN--EGFIDGLGDA 186 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lh~p~~~~~--~~~~~~l~~l 186 (311)
++.+-+.|++..+..+.+=++|.|-+.. +-|-..++...++++. .-++++.+|-|.+... ...-.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~~-------eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCTS-------SILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCch-------hhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 5566666665432222344555555532 2333333333333321 2368999999977321 1111222222
Q ss_pred H------------------HcCccceEeecCC---cHHHHHHHHHHHHhcCCCeeE
Q 021542 187 V------------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 187 ~------------------~~G~ir~iGvs~~---~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+ ..++|.-||.++. ++..+.++.+..+..|+.+.+
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~ 198 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQ 198 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEE
Confidence 2 2366889987742 345566666667777766543
No 78
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=68.25 E-value=1.1e+02 Score=30.10 Aligned_cols=117 Identities=9% Similarity=0.096 Sum_probs=64.6
Q ss_pred ECCcccCCCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccceEE
Q 021542 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQ 167 (311)
Q Consensus 93 Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d----~iDl~~ 167 (311)
+..-.||. |+-|-++|++.....+ .+=++|.|-+.. ..-.|.|..-+++.-+++.-+ .+.++.
T Consensus 66 E~dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~~---eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~ 133 (457)
T TIGR02932 66 EESAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCST---ETIGDDIEGSIRKVNRALKKEFPDRKIKLVP 133 (457)
T ss_pred CCceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCchH---HhhcCCHHHHHHHHHhhhhhhcCCCCCeEEE
Confidence 33446776 8888888877544321 244667666643 122333444444332222211 478899
Q ss_pred eecCCCCC-----cHHHHHHHHHHH-H-----cCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 168 LHWAGIWG-----NEGFIDGLGDAV-E-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 168 lh~p~~~~-----~~~~~~~l~~l~-~-----~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
++-|++.. .+.++++|-+.. + +++|.-||-.+ ++..+.++.++.+..|+++.++
T Consensus 134 v~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 134 VHTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eeCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEEE
Confidence 99998842 334444444322 1 36687776443 3455666666677777766553
No 79
>PRK07329 hypothetical protein; Provisional
Probab=68.18 E-value=88 Score=27.81 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=63.0
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC----------CCcHHHH----HHHHHHHHcC-ccceEeecC----------Cc--
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGI----------WGNEGFI----DGLGDAVEQG-LVKAVGVSN----------YS-- 201 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~----------~~~~~~~----~~l~~l~~~G-~ir~iGvs~----------~~-- 201 (311)
..+++.|.+...||+ +..+|+.+. .+.++++ +.+.++.+.+ .+.-+|=-. .+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 455666667777888 788897532 1223444 7788888876 655444111 11
Q ss_pred --HHHHHHHHHHHHhcCCCeeEeeecCC-ccccCccccChhhHHHhcCceEEEcccccc
Q 021542 202 --EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 202 --~~~~~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
...++++++.+.+.+..+.+|-..+. ....... ..+++.|++.|+..+..+.=+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~gSDAH 219 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSIGSDAH 219 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEecCCCC
Confidence 24456777777877777777654331 1111111 2478999999987666555443
No 80
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=68.10 E-value=1.1e+02 Score=28.92 Aligned_cols=155 Identities=8% Similarity=-0.066 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+.++..+.++.+.+.|++.|-.- .++...- ....+.+ +++++.-- .++-|..-.. ..++.+...+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~---~~di~~i-~~vR~~~G----~~~~l~vDan---~~~~~~~A~~~~- 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV---RRDLKAC-LAVREAVG----PDMRLMHDGA---HWYSRADALRLG- 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH---HHHHHHH-HHHHHHhC----CCCeEEEECC---CCcCHHHHHHHH-
Confidence 34667778888899999988652 1211000 0001222 33443210 2333333221 224444333222
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCc-HHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~-~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
+.|+. .++.++..|- +..+ ++.+.+|+++-.|. ..|=+-++ .+++.++++. -..+++|...+.+-
T Consensus 210 ~~l~~-----~~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEE-----LGFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhh-----cCCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 22333 3555666553 2233 47777888875554 34445556 7888888664 24777887766543
Q ss_pred cCccccChhhHHHhcCceEEEcc
Q 021542 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v~a~s 253 (311)
.--....+...|+++||.+...+
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 22122258999999999997654
No 81
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=68.04 E-value=1.2e+02 Score=30.45 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+.|-++|++...+.+.+-++|.+-+ ..+-|-..++...+.++.+ ++++.++-|.+.. ...++++|-
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~~-~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGLP-IPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCCC-CCEEEEecCCcccccchHHHHHHHHHH
Confidence 66677777665432212344555544 3344455555555566653 6799999987722 222333222
Q ss_pred H-HH-----------HcCccceEeecCC---cHHHHHHHHHHHHhcCCCeeEe
Q 021542 185 D-AV-----------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 185 ~-l~-----------~~G~ir~iGvs~~---~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
+ +. +.++|.-||.++. ++..+.++.+..+..|+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v 194 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVV 194 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 1 11 2256888887652 4566777777777777766554
No 82
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=67.57 E-value=1.1e+02 Score=29.45 Aligned_cols=82 Identities=11% Similarity=-0.030 Sum_probs=56.4
Q ss_pred ceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHH
Q 021542 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (311)
Q Consensus 164 Dl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~ 242 (311)
++.++..|-. -++.+.+|++...+. ..|-|-++.+++.++++. --++++|.....+----+-..+.++|
T Consensus 239 ~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~GGit~~~kia~~A 308 (395)
T cd03323 239 VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWGGMRGSVRVAQVC 308 (395)
T ss_pred CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeeccccccCHHHHHHHHHHH
Confidence 6777777743 477888888887665 667677777888877653 24777777765443211222588999
Q ss_pred HhcCceEEEcccc
Q 021542 243 DELGITLIAYCPI 255 (311)
Q Consensus 243 ~~~gi~v~a~s~l 255 (311)
+++||.+...+..
T Consensus 309 ~~~gi~~~~h~~~ 321 (395)
T cd03323 309 ETWGLGWGMHSNN 321 (395)
T ss_pred HHcCCeEEEecCc
Confidence 9999999887654
No 83
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=67.50 E-value=65 Score=28.93 Aligned_cols=52 Identities=19% Similarity=0.096 Sum_probs=31.8
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..++.|++.|...+.... +. +... . .....+....+.+.++.++|+++|+++
T Consensus 98 ~~i~~a~~lG~~~v~~~~---~~----~~~~--------~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l 149 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG---YD----VYYE--------E-HDEETRRRFREGLKEAVELAARAQVTL 149 (279)
T ss_pred HHHHHHHHhCCCEEEecC---cc----cccC--------c-CCHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 478889999998886431 10 0000 0 013334556677778889999988753
No 84
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.41 E-value=42 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.207 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEE
Q 021542 72 RKMKAAKAAFDTSLDNGITFFD 93 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~D 93 (311)
.|++.+.+++..+++.|+...|
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~ 29 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQD 29 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 3568999999999999976544
No 85
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=67.18 E-value=95 Score=29.78 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=58.2
Q ss_pred ccceEEeecCCC------CCcHHHHHHHHHHHHcCcc-ceEeec---CCcHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 162 SVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 162 ~iDl~~lh~p~~------~~~~~~~~~l~~l~~~G~i-r~iGvs---~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
..|++.||.-.. .+.+++.+.+++..+.=.+ --|+=| ..+++.+++.++.+.. -++-++-.....
T Consensus 153 ~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G--~kpLL~SAt~e~--- 227 (389)
T TIGR00381 153 GADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG--ERCLLASANLDL--- 227 (389)
T ss_pred CCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC--CCcEEEecCchh---
Confidence 478888886432 2345777777776444332 344444 5588999999777542 134443222211
Q ss_pred CccccChhhHHHhcCceEEEccccccccc
Q 021542 232 KPEENGVKAACDELGITLIAYCPIAQGAL 260 (311)
Q Consensus 232 ~~~~~~ll~~~~~~gi~v~a~s~l~~G~L 260 (311)
..+ .+.+.|+++|..+++++|..-|.+
T Consensus 228 -Ny~-~ia~lAk~yg~~Vvv~s~~Din~a 254 (389)
T TIGR00381 228 -DYE-KIANAAKKYGHVVLSWTIMDINMQ 254 (389)
T ss_pred -hHH-HHHHHHHHhCCeEEEEcCCcHHHH
Confidence 122 489999999999999998876653
No 86
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=65.50 E-value=60 Score=31.03 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=63.6
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhc----CCCeeEee
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKR----GIPLASNQ 223 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~~~~~~~~~~~~----~~~~~~~q 223 (311)
+.||.|+. ++.+++++++.+..++ |+ +-|+=+. |.+++++.++.+.++.. +.+.-+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 78998864 3578899998888654 32 2233333 66789999998877633 11678999
Q ss_pred ecCCccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 224 VNYSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 224 ~~~n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
++||+........ ...+.++++||.+......+.
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999976432221 466778899999998876654
No 87
>PRK05985 cytosine deaminase; Provisional
Probab=65.32 E-value=1.3e+02 Score=28.59 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
..+...+..++..|++++-+-..+..+.. -.+-..+-++.++... |-.+-+..-... ...........+++.
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--g~~~~~~~~~ll~~~ 169 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAG---LRHLEAVLAARETLRG---LIDIQIVAFPQS--GVLSRPGTAELLDAA 169 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCcc---cchHHHHHHHHHHhhC---cccEEEEeccCc--cccCCcCHHHHHHHH
Confidence 55777799999999998733111111100 0012334444444321 223333332211 112221123445555
Q ss_pred HHHhCCCccceEEe---ecCCCCCcHHHHHHHHHHHHcCccceEeecCC---cHHHHHHHHHHHHhcCCC--eeEeeecC
Q 021542 155 LFRLGLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIP--LASNQVNY 226 (311)
Q Consensus 155 L~~L~~d~iDl~~l---h~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~---~~~~~~~~~~~~~~~~~~--~~~~q~~~ 226 (311)
|+.. . |+..- |.++....+.+-+.++.+.+.|+.-.+=+... ....+.++++.+...+.. ..+....
T Consensus 170 l~~g-~---~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~- 244 (391)
T PRK05985 170 LRAG-A---DVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAF- 244 (391)
T ss_pred HHcC-C---CEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhh-
Confidence 5543 2 33222 23332223444445566677776553333332 234555555555444432 2221111
Q ss_pred CccccCc-cccChhhHHHhcCceEEEccccccc
Q 021542 227 SLIYRKP-EENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 227 n~~~~~~-~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
.+-.... +..++++.+++.|+.++.-.++..|
T Consensus 245 ~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~~ 277 (391)
T PRK05985 245 CLGDLPEREVDRLAERLAEAGVAIMTNAPGSVP 277 (391)
T ss_pred hhhcCCHHHHHHHHHHHHHcCCeEEEeCCCCCC
Confidence 1101111 1114688888999988654444433
No 88
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=65.26 E-value=1.1e+02 Score=27.65 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEECCcccC
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYG 99 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg 99 (311)
..+|.+...+.++..++.|++-|-..-.-|
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 467889999999999999999875444433
No 89
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=64.35 E-value=1.3e+02 Score=29.17 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--cHHHHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~l~~l~ 187 (311)
++-+-++|.+.....+.+-++|.|-+.. ..-.+.+...+++.-+++ -+.++.+|.|.+.. ....-.+++.+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~~---~iIGdDi~~v~~~~~~~~---~~~vi~v~t~gf~g~~~~g~~~al~~l~ 143 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCTS---SILQEDLQNFVRAAGLSS---KSPVLPLDVNHYRVNELQAADETFEQLV 143 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccH---HHHhhCHHHHHHHhhhcc---CCCeEEecCCCccchHHHHHHHHHHHHH
Confidence 3444455544332221345666665532 122233333333322232 26789999987732 122222222222
Q ss_pred -----------------HcCccceEeecCCc---HHHHHHHHHHHHhcCCCeeEe
Q 021542 188 -----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 188 -----------------~~G~ir~iGvs~~~---~~~~~~~~~~~~~~~~~~~~~ 222 (311)
++.+|.-||.++.+ +..+.++.+..+..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~ 198 (430)
T cd01981 144 RFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVV 198 (430)
T ss_pred HHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEE
Confidence 22568888887543 566667766677778776553
No 90
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=64.23 E-value=1.2e+02 Score=28.15 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=63.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
++.+.++.|.... .-...+...+++..+.+| +++.+ ..+...+.....+.++.+..+| +..|-++..++..+
T Consensus 23 ~~~i~~v~k~~~~---pf~~~~~~Gi~~aa~~~G---~~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGV---GFFTSGGNGAKEAGKELG---VDVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCC---HHHHHHHHHHHHHHHHhC---CEEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 5788899987532 224578889999999998 44443 3444345566678899999876 88899988887777
Q ss_pred HHHHHHHHhcCCCeeEe
Q 021542 206 RNAYEKLKKRGIPLASN 222 (311)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (311)
...++.+...++++.++
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777777777765553
No 91
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=63.76 E-value=40 Score=28.04 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=59.3
Q ss_pred EEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc----cccChhhH
Q 021542 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EENGVKAA 241 (311)
Q Consensus 166 ~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~ll~~ 241 (311)
+++..|.....+++++..-+--++.-|++|=|.+-+.....++++..+.. +++.++ -|+.-.... .+.++-+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvV--thh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVV--THHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEE--EeecccccCCceecCHHHHHH
Confidence 45666766667778887766667777999999888888888887765422 334443 333333322 22368888
Q ss_pred HHhcCceEEEccccccc
Q 021542 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~G 258 (311)
.+++|..++.-|-...|
T Consensus 79 L~erGa~v~~~sHalSg 95 (186)
T COG1751 79 LKERGAKVLTQSHALSG 95 (186)
T ss_pred HHHcCceeeeehhhhhc
Confidence 99999999875544443
No 92
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.76 E-value=52 Score=28.82 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
++.+.. ..+-+.|.++|+++|++- .|.. ....+.++.+.+.... .+-.+++......++..++.+...+....
T Consensus 11 ~~~~~k-~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEK-LEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHH-HHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHH-HHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 455544 445556999999999988 3321 2233445555555555 45556666777888887766666666554
Q ss_pred EeeecCCccccCc-----------cccChhhHHHhcCceE
Q 021542 221 SNQVNYSLIYRKP-----------EENGVKAACDELGITL 249 (311)
Q Consensus 221 ~~q~~~n~~~~~~-----------~~~~ll~~~~~~gi~v 249 (311)
-+-...|...... .-.+.+++++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4555555522110 0014788899999988
No 93
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.59 E-value=47 Score=29.81 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=29.0
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..+++|++.|+..+...+-... .......+....+.+.++.++|+++|+++
T Consensus 89 ~~i~~A~~lG~~~v~~~~g~~~-----------------~~~~~~~~~~~~~~l~~l~~~a~~~gi~l 139 (279)
T cd00019 89 DEIERCEELGIRLLVFHPGSYL-----------------GQSKEEGLKRVIEALNELIDKAETKGVVI 139 (279)
T ss_pred HHHHHHHHcCCCEEEECCCCCC-----------------CCCHHHHHHHHHHHHHHHHHhccCCCCEE
Confidence 3778888888887655332110 01122334555666667777777777643
No 94
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=62.46 E-value=59 Score=29.07 Aligned_cols=121 Identities=19% Similarity=0.129 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCC---------CC---CCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS---------RA---SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP 139 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~---------g~---~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~ 139 (311)
.+.++..++.+++-+.||.||=|...... .. +++--++-.+|- .+.+. ...++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~-~~A~t-----gkPvIlSTG~---- 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLE-YIAKT-----GKPVILSTGM---- 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHH-HHHTT------S-EEEE-TT----
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHH-HHHHh-----CCcEEEECCC----
Confidence 45789999999999999999976533211 00 000000111221 11111 2567777755
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--c-HHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--N-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~-~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~ 208 (311)
.+.++|.++++-..++- .-|+.+||-...+| . +--+..|..|++.=- --||.|.|+.....-+
T Consensus 123 --stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 123 --STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPI 188 (241)
T ss_dssp ----HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHH
T ss_pred --CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHH
Confidence 56677877777664443 46899999765533 3 334666777775522 6789999986433333
No 95
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=62.46 E-value=1.4e+02 Score=28.16 Aligned_cols=85 Identities=9% Similarity=-0.083 Sum_probs=55.7
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.++.++..|-+. +-++.+.+|++...+. ..|-+-++.+++.++++. ..++++|+....+-.-..-..+...
T Consensus 213 ~~~~~iEeP~~~---~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~l 284 (368)
T TIGR02534 213 AGVELIEQPTPA---ENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAI 284 (368)
T ss_pred cChhheECCCCc---ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHH
Confidence 455666666432 2366777788876664 778888888888888654 3467777765543321111248889
Q ss_pred HHhcCceEEEcccc
Q 021542 242 CDELGITLIAYCPI 255 (311)
Q Consensus 242 ~~~~gi~v~a~s~l 255 (311)
|+.+|+.+...+.+
T Consensus 285 A~~~gi~~~~~~~~ 298 (368)
T TIGR02534 285 AEAAGIALYGGTML 298 (368)
T ss_pred HHHcCCceeeecch
Confidence 99999998876443
No 96
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=61.89 E-value=29 Score=30.31 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=56.4
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.++.++..|-+. +-++.+.+|.+...+. ..+-|-++.+.+.++++. ..++++|+..+.+-.-.+-..+.++
T Consensus 120 ~~i~~iEeP~~~---~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCAP---DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCCc---cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 567777766432 2356677788877665 445555677777666543 2477777776554321111248899
Q ss_pred HHhcCceEEEccccccc
Q 021542 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~G 258 (311)
|+++|+.+...+.+..+
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999998776543
No 97
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=61.78 E-value=1.5e+02 Score=28.26 Aligned_cols=105 Identities=22% Similarity=0.210 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~l 183 (311)
|+-|-++|++.....+.+=++|.|=+.. ..-.+.+...+++.-++.+ +.++.+|-|.+.. ...++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 7777777776543222345666666643 1222334333333333433 7899999886622 34455555
Q ss_pred HHHH---------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~~l~---------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
-+.. +.+.|.-||..++. ..+.++.+..+..|+++..
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEEE
Confidence 4443 23568888987663 3455555556667765543
No 98
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=61.48 E-value=22 Score=32.57 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
++.+ -+..+-+.|.++|+++|++-.+..|... ...+.++.+..+.+...++...+. .+...++.+++. +....
T Consensus 23 ~s~e-~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTA-DKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 4444 3455666799999999999866666532 233446666666554446655555 477778777543 33322
Q ss_pred EeeecCCcccc------Ccc-----ccChhhHHHhcCceEEE
Q 021542 221 SNQVNYSLIYR------KPE-----ENGVKAACDELGITLIA 251 (311)
Q Consensus 221 ~~q~~~n~~~~------~~~-----~~~ll~~~~~~gi~v~a 251 (311)
.+-...|..+. ..+ -...+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 22223322211 000 01488999999998864
No 99
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=61.16 E-value=38 Score=32.27 Aligned_cols=107 Identities=19% Similarity=0.232 Sum_probs=60.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-----CcHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-----~~~~~~~~l~ 184 (311)
|+-+-+++++.......+=++|.|=+.. ..-.+.+..-+++.-++.+. .++.+|-+... +.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 7777777765432221366777766532 12222333444444444543 88899987762 2445666655
Q ss_pred HHH-H------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 185 ~l~-~------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
+.. + .+.|.-||.++.....+.++.+..+..|+++.++
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~ 177 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAV 177 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEE
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEE
Confidence 544 2 2678889999887677777777777777654443
No 100
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=61.03 E-value=89 Score=29.92 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=64.3
Q ss_pred eEEeecCCC------------CCcHHHHHHHHHHH-HcCc---cceEeecC--CcHHHHHHHHHHHHhcC-CCeeEeeec
Q 021542 165 LYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSN--YSEKRLRNAYEKLKKRG-IPLASNQVN 225 (311)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~l~~l~-~~G~---ir~iGvs~--~~~~~~~~~~~~~~~~~-~~~~~~q~~ 225 (311)
.+.||.++. ++.+++++++.+.. +.|+ |+++=+.+ .+.++++++.+.++... .+..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 477898875 23688999987776 4464 45666664 46777888877766442 256889999
Q ss_pred CCccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 226 ~n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
||++.....+. ...+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99976432221 367778899999988776654
No 101
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.98 E-value=1.6e+02 Score=28.45 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+..+.+++.|++.|=.-- |.... ...+.+ +++++.- -.++-|..-.. ..++.+...+.+
T Consensus 198 ~~~~~~a~~~~~~Gf~~~KiKv--g~~~~----~d~~~v-~avRe~v----G~~~~L~vDaN---~~w~~~~A~~~~--- 260 (415)
T cd03324 198 EKLRRLCKEALAQGFTHFKLKV--GADLE----DDIRRC-RLAREVI----GPDNKLMIDAN---QRWDVPEAIEWV--- 260 (415)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CCCHH----HHHHHH-HHHHHhc----CCCCeEEEECC---CCCCHHHHHHHH---
Confidence 5555667777788999875321 11000 001222 3344321 12333333331 224555433333
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC----ccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G----~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (311)
++| +..++.++..|-.. +-++.+.+|++.. .--..|=+-++.+.+.++++. -..+++|....-.-
T Consensus 261 -~~L--~~~~l~~iEEP~~~---~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~G 329 (415)
T cd03324 261 -KQL--AEFKPWWIEEPTSP---DDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRLG 329 (415)
T ss_pred -HHh--hccCCCEEECCCCC---CcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCccccC
Confidence 333 23466677776432 2355666666653 334566677888888888654 35778887765543
Q ss_pred cCccccChhhHHHhcCceEEEcc
Q 021542 231 RKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 231 ~~~~~~~ll~~~~~~gi~v~a~s 253 (311)
---+...+.+.|+.+|+.+...+
T Consensus 330 Git~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 330 GVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcC
Confidence 21122258899999999998864
No 102
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=60.20 E-value=56 Score=29.57 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-------CCcHHHHHHHHHHHHcCccceEeecCCc---HHHHHHHH
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAY 209 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-------~~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~~~~~~ 209 (311)
+.++.+.. ..+-+.|.++|+|+|++-+...... ....+.|+.+.++.+ +..+..+++... .+.++.+
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a- 91 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA- 91 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH-
Confidence 34566544 4555569999999999987654321 123566666666553 234444444433 2333332
Q ss_pred HHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
...++...-+....|-++.- .+.+++++++|+.+..
T Consensus 92 ---~~~gv~~iri~~~~~~~~~~---~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 92 ---SGSVVDMIRVAFHKHEFDEA---LPLIKAIKEKGYEVFF 127 (266)
T ss_pred ---hcCCcCEEEEecccccHHHH---HHHHHHHHHCCCeEEE
Confidence 22333221122222222211 1367777777776554
No 103
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=60.06 E-value=1.7e+02 Score=28.28 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=62.6
Q ss_pred ECCcccCCCCCCCCCchHHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 021542 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (311)
Q Consensus 93 Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 171 (311)
++.-.||. |+-|-++|++.....|+ +=++|.|=+.. ..-.+.+...+++.-++.+ .++++.+|-|
T Consensus 64 E~d~VfGg---------~~~L~~aI~~~~~~~p~p~~i~V~~tc~~---~liGdDi~~v~~~~~~~~~--~~~vi~v~tp 129 (415)
T cd01977 64 ESHVVFGG---------EKKLKKNIIEAFKEFPDIKRMTVYTTCTT---ALIGDDIKAVAKEVMEELP--DVDIFVCNAP 129 (415)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCcEEEEECCCch---hhhcCCHHHHHHHHHHhcC--CCeEEEEeCC
Confidence 34456776 77888888765543333 33677776643 2233444444444333432 2789999998
Q ss_pred CCCCc--H-H---HHH-HHHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 172 GIWGN--E-G---FID-GLGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 172 ~~~~~--~-~---~~~-~l~~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
++.+. . . +.+ .++++. +.+.|.-||-.++ +..++++.+..+..|+++.
T Consensus 130 gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 130 GFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQVL 192 (415)
T ss_pred CcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeEE
Confidence 87431 1 1 122 233343 1467888885443 3445555555777777664
No 104
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=59.83 E-value=27 Score=31.16 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=50.5
Q ss_pred CCCcccccceecccc---cCCCCCCCCCcCChhhHHHHHHHHHHH----HHCCCCeEECCcc---cCCCCCCCCCchHHH
Q 021542 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAEV---YGSRASFGAINSETL 112 (311)
Q Consensus 43 ~tg~~vs~lglG~~~---~g~~~~~~~~~~~~~~~~~a~~~l~~A----l~~Gin~~Dta~~---Yg~g~~~~~~~sE~~ 112 (311)
.||+.+|.+||.+.+ ||.. .+..++++.+++..| .+.|||.|-.|.. |.. .+ |+-
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~-~d------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEE-AD------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeecc-CC------HHH
Confidence 479999999999874 4432 345567777776665 4789999987643 333 22 666
Q ss_pred HHHHHHhccCCC---CCCcEEEEecCC
Q 021542 113 LGRFIKERKQRD---PEVEVTVATKFA 136 (311)
Q Consensus 113 lg~aL~~~~~~~---~R~~~~i~tK~~ 136 (311)
..+++.+..... .|..+.++.-+.
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeeec
Confidence 666655432100 256777777774
No 105
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=59.55 E-value=63 Score=29.70 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=60.0
Q ss_pred HHHhCCCccceEEeec-CCCCCcHHH-----HHHHHHHHHcCccceEeecCCcHHHHH----HHHHHHHhcCCCeeEeee
Q 021542 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKRLR----NAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~-p~~~~~~~~-----~~~l~~l~~~G~ir~iGvs~~~~~~~~----~~~~~~~~~~~~~~~~q~ 224 (311)
++-++-.++|++.+.. .......+. -+.+-+...+--=|++|+.+.++..-+ ++-+..++ .-++++
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~----~gf~g~ 130 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE----LGFVGV 130 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh----cCceEE
Confidence 7788889999999984 222122222 256777777766799999988765322 33333332 333444
Q ss_pred cCCccccCc--cc---cChhhHHHhcCceEEEcccccc
Q 021542 225 NYSLIYRKP--EE---NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 225 ~~n~~~~~~--~~---~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
..++..+.. .. ..++++|+++|+.++.+.....
T Consensus 131 ~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~ 168 (293)
T COG2159 131 KLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGP 168 (293)
T ss_pred EecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 444444321 11 2589999999999988554443
No 106
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=58.11 E-value=1e+02 Score=29.10 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccc-eEEee--cCCC--CCcHHHHHHHHHHHHcC--c--cceEeecCC----cHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVE-LYQLH--WAGI--WGNEGFIDGLGDAVEQG--L--VKAVGVSNY----SEKRLRNA 208 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iD-l~~lh--~p~~--~~~~~~~~~l~~l~~~G--~--ir~iGvs~~----~~~~~~~~ 208 (311)
.+.+...+.++...+.-. ++-+ ++=+. ..+. .+....+..+..+++.| . +-|.|-++. .++.+.++
T Consensus 140 ~~~e~~~e~~~~a~~~~~-~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~a 218 (345)
T cd01321 140 FNDSEIKESMEQCLNLKK-KFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDA 218 (345)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHH
Confidence 455666666666655211 1122 22222 2221 34566777777777777 2 345564432 23455555
Q ss_pred HHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
+.. . +.=+.-.+++.. ...+++++++++|.+-.
T Consensus 219 l~l-g-----~~RIGHG~~~~~----dp~ll~~l~~~~I~lEv 251 (345)
T cd01321 219 LLL-N-----TKRIGHGFALPK----HPLLMDLVKKKNIAIEV 251 (345)
T ss_pred HHh-C-----CCcCccccccCc----CHHHHHHHHHcCCeEEE
Confidence 421 1 111111122211 12599999999998865
No 107
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=58.04 E-value=35 Score=29.68 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=43.3
Q ss_pred HHHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 155 L~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
+..+|.||+=+++.. .|...+.+.+-+....+ .+.++.+||. |-+++.+.++++. ..++++|+.-
T Consensus 17 ~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 17 ASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 446999999987544 33334444443333332 3568889986 7788888888665 5789999874
No 108
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=57.74 E-value=1.7e+02 Score=27.44 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..+.+..+++.|++.|=.=- +.... .+.+ +++++.. +.-++.|=.- ..++.+... .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~---g~~~l~lDaN-----~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF---PDIPLMADAN-----SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC---CCCeEEEECC-----CCCCHHHHH-----H
Confidence 5566777888899999874311 11111 3333 3344332 1112333222 124444432 2
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
+++| +..++.++..|-. .+-++.+.+|++.-.+ -..|-|-++.+.+..+++. --++++|+..+.+-.-.
T Consensus 197 ~~~l--~~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRL--DEYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHh--hcCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 3444 2346777776632 2236667777766443 4677778888888888654 24677777765543211
Q ss_pred cccChhhHHHhcCceEEEcccc
Q 021542 234 EENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s~l 255 (311)
.-..+..+|+.+||.++..+..
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcc
Confidence 1224889999999999775544
No 109
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=57.53 E-value=89 Score=27.69 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=30.8
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
..+++|++.|...+... .|.... ..-..+.+....+.+.++.++|+++|+.
T Consensus 89 ~~i~~a~~lga~~i~~~---~g~~~~-------------~~~~~~~~~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 89 AAIRYARALGNKKINCL---VGKTPA-------------GFSSEQIHATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHhCCCEEEEC---CCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 47889999999876431 111100 0112233455667777888888888874
No 110
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=56.30 E-value=2.1e+02 Score=28.12 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC---cHHH---HHH
Q 021542 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGF---IDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~---~~~~---~~~ 182 (311)
|+-|-++|.+..+..|+ +-++|.+=+.. ..-.+.+...+++.-++.+ .+.++.+|-|++.. .... .++
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 88888888776443322 33666666642 1223333333333333321 27899999988733 1222 222
Q ss_pred -HHHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 183 -l~~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
+++++ ..++|.-||-.+. +..+.++.+..+..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 2367888885554 3456666666777777664
No 111
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=56.21 E-value=1.7e+02 Score=27.20 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=54.7
Q ss_pred cceEEeecCCCC--CcHHHHHHHHHHHHcCccceEeecC----CcHHHHH-HHHHHHHhcCCCeeEeeecCCcc-ccCcc
Q 021542 163 VELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLR-NAYEKLKKRGIPLASNQVNYSLI-YRKPE 234 (311)
Q Consensus 163 iDl~~lh~p~~~--~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~~~-~~~~~~~~~~~~~~~~q~~~n~~-~~~~~ 234 (311)
|.-+.+-.-|+. ....+.+.++.+..-..++.+|+.+ ..+..+. ++++..+..+.+. ++++.+|-. +-..+
T Consensus 143 i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~ 221 (321)
T TIGR03821 143 INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAE 221 (321)
T ss_pred CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHH
Confidence 444555554552 2233667777777777888888764 4444443 4444444443322 223344422 11122
Q ss_pred ccChhhHHHhcCceEEEcccccccc
Q 021542 235 ENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 235 ~~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
..+.++.+++.||.+...+++..|.
T Consensus 222 ~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 222 VADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred HHHHHHHHHHcCCEEEecceeeCCC
Confidence 2247888899999999999998874
No 112
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=55.71 E-value=1.6e+02 Score=26.68 Aligned_cols=105 Identities=11% Similarity=-0.125 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHh------CCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHH
Q 021542 141 RLGRQSVLAALKDSLFRL------GLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L------~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~ 212 (311)
-++.++-.+..+-..+-+ +++.|-|=.+-.+.. .++.|++++-+.|+++|-+-. =-++-++-..+++.+
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed-- 156 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLED-- 156 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHH--
Confidence 356665555554444444 566555555545444 568899999999999996532 223334444444433
Q ss_pred HhcCCCeeEeeecCCccccCcc--ccChhhH-HHhcCceEEEc
Q 021542 213 KKRGIPLASNQVNYSLIYRKPE--ENGVKAA-CDELGITLIAY 252 (311)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~--~~~ll~~-~~~~gi~v~a~ 252 (311)
....+++.--+|+-.... ....++. ++.-+|.++.-
T Consensus 157 ----~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivd 195 (267)
T CHL00162 157 ----IGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIID 195 (267)
T ss_pred ----cCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEe
Confidence 245566655555553221 0112333 34456777764
No 113
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=55.42 E-value=1.6e+02 Score=26.43 Aligned_cols=109 Identities=12% Similarity=-0.042 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCC
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
.-++.++-.+..+-..+.+++++|-+=.+-.++. .+.-+++++-|.|+++|-+-.- -++-++-..+++.+ .
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee------~ 150 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEE------A 150 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHh------c
Confidence 3477787777888888899999999888877665 5688999999999999965421 22333333344433 2
Q ss_pred CeeEeeecCCccccCccc---cChhhHHHhcCceEEEcccc
Q 021542 218 PLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~---~~ll~~~~~~gi~v~a~s~l 255 (311)
...+++---.++-....- .-+.-..++.+++++.=.-+
T Consensus 151 GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGi 191 (262)
T COG2022 151 GCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGI 191 (262)
T ss_pred CceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCC
Confidence 344444444444322100 01333445558888764433
No 114
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=55.06 E-value=30 Score=29.17 Aligned_cols=63 Identities=24% Similarity=0.201 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCc----cceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHH
Q 021542 147 VLAALKDSLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~----iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~ 210 (311)
.+..++..++.+|.+. ++.+.-.+.......++.+.|+.|++.| ++-.-+||.+...+...++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH
Confidence 3556666777777651 1111111112234567888999999988 5556688888777776644
No 115
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=54.90 E-value=96 Score=28.06 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCC-CCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g-~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
++..+..+.++++|..|+=|+..|+.+ .+ ...-+++-+.++++.. ..+ +.-|... .-.+.+....-++.
T Consensus 147 e~i~~a~~~a~~aGADFVKTSTGf~~~gAt---~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~a 216 (257)
T PRK05283 147 ALIRKASEIAIKAGADFIKTSTGKVPVNAT---LEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLAL 216 (257)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCCCCCCC---HHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHH
Confidence 357889999999999999999999742 22 1334455555544321 122 4445532 33788899999999
Q ss_pred HHHHhCCCccc
Q 021542 154 SLFRLGLSSVE 164 (311)
Q Consensus 154 sL~~L~~d~iD 164 (311)
.-+.||.++++
T Consensus 217 g~~~lg~~~~~ 227 (257)
T PRK05283 217 ADEILGADWAD 227 (257)
T ss_pred HHHHhChhhcC
Confidence 99999999887
No 116
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=54.72 E-value=1.4e+02 Score=25.79 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=54.3
Q ss_pred HhCCCccceEEee-cCCC--CCcHH----HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcc
Q 021542 157 RLGLSSVELYQLH-WAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (311)
Q Consensus 157 ~L~~d~iDl~~lh-~p~~--~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~ 229 (311)
.-|.++||+=--- +|.. .+.++ +...++.+++..-=--|.+-+++++.++++++. +.++..+...+..
T Consensus 30 ~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~~- 104 (210)
T PF00809_consen 30 EAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFED- 104 (210)
T ss_dssp HTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTSS-
T ss_pred HhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEecccccc-
Confidence 4588999985332 3433 22333 344444444411114578889999999999764 4555444333322
Q ss_pred ccCccccChhhHHHhcCceEEEcccc
Q 021542 230 YRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 230 ~~~~~~~~ll~~~~~~gi~v~a~s~l 255 (311)
..++++.++++|..++++..-
T Consensus 105 -----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 -----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp -----STTHHHHHHHHTSEEEEESES
T ss_pred -----cchhhhhhhcCCCEEEEEecc
Confidence 225999999999999987665
No 117
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.44 E-value=1e+02 Score=29.21 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=64.9
Q ss_pred cce-EEeecCCC------------CCcHHHHHHHHHHHHcC--c--cceEeec--CCcHHHHHHHHHHHHhcCCCeeEee
Q 021542 163 VEL-YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 163 iDl-~~lh~p~~------------~~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q 223 (311)
+-+ +-||.++. .+.+++++++.+..+.+ + |+++=+. |.+.+.++++.+.++.. +..++-
T Consensus 207 ~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnl 284 (349)
T PRK14463 207 VNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNL 284 (349)
T ss_pred eEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEE
Confidence 444 66888764 22467788877776654 2 3444444 55679999998887654 456777
Q ss_pred ecCCccccCccc----c---ChhhHHHhcCceEEEccccc------ccccCCCCC
Q 021542 224 VNYSLIYRKPEE----N---GVKAACDELGITLIAYCPIA------QGALTGKYT 265 (311)
Q Consensus 224 ~~~n~~~~~~~~----~---~ll~~~~~~gi~v~a~s~l~------~G~L~~~~~ 265 (311)
++||+....... . .+.+..+++||.+......+ .|.|..+..
T Consensus 285 IPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~ 339 (349)
T PRK14463 285 IPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKLD 339 (349)
T ss_pred EecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCccccccc
Confidence 999997642211 1 35667888999999887665 355554433
No 118
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=54.44 E-value=1.4e+02 Score=26.87 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=58.0
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCC--------CCHHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~--------~~~~~i~~~ 150 (311)
+.+++|++.|...|..-..-.. ...+.+.++++. -.+++...-+. +.. .-.+.+...
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGT-PKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCC-CcccccCCCcccHHHHHHHH
Confidence 4677888889888864322211 134456667664 45666544321 111 012344444
Q ss_pred HHHH---HHHhCCC----ccceEEeecCCC-CCcHHHHHHHHHHHHcCccceEeecCCc
Q 021542 151 LKDS---LFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 151 l~~s---L~~L~~d----~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
+++. +++.|++ ++|-..- .... ...-++++.++.+++.|.=-.+|+||-+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 5543 4445665 4443210 0000 1234678888888888877789999864
No 119
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.39 E-value=64 Score=28.16 Aligned_cols=22 Identities=0% Similarity=-0.102 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEE
Q 021542 72 RKMKAAKAAFDTSLDNGITFFD 93 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~D 93 (311)
.|++.+.++++.|++.|+...|
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~ 33 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLE 33 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4578999999999999866444
No 120
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=54.30 E-value=1.6e+02 Score=28.89 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCC-C-CcHHHHHHHHHHHHcCccceEeecCCc---HHHHHHHHHHHHhc
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-W-GNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYEKLKKR 215 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~-~~~~~~~~l~~l~~~G~ir~iGvs~~~---~~~~~~~~~~~~~~ 215 (311)
..+++++.+.+++....+. .++.+-|-.+.. . ..+.+++.|..++++..=..+.+++-. ++.+++++..
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~---- 132 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDL---- 132 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHC----
Confidence 3678888888888777652 456777777543 2 235688899999988211245665543 5667766543
Q ss_pred CCCeeEeeecCCccccCccc--------------------------cChhhHHHhcCceEEEccccccc
Q 021542 216 GIPLASNQVNYSLIYRKPEE--------------------------NGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~--------------------------~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
.++.+.+.++-+++.... .+-++.+.+.|+.+....++-.|
T Consensus 133 --gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 133 --GVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred --CCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 244455555544322110 01245577888888777777765
No 121
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=54.05 E-value=7.6 Score=26.88 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCChhHhhhcC
Q 021542 292 RIKELGENYSKTSTQASTGY 311 (311)
Q Consensus 292 ~l~~iA~~~g~s~~q~al~w 311 (311)
-+.+||+++|+++.++|..|
T Consensus 15 ~FveIAr~~~i~a~e~a~~w 34 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAW 34 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHH
Confidence 47899999999999999887
No 122
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=53.94 E-value=1.8e+02 Score=28.43 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|.+.....+.+=++|.|=+.. ..-.+.+...+++.-++.+ +.++.++-|.+.. ...++++|-
T Consensus 106 ~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~g~~~~G~~~a~~al~ 179 (456)
T TIGR01283 106 EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFYGSKNLGNKLACDALL 179 (456)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCCCccchhHHHHHHHHHHH
Confidence 8888888876544333456777776643 1222333333333333333 6788999887622 233455544
Q ss_pred HHHH-------------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 185 DAVE-------------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 ~l~~-------------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+... .+.|.-||-.+.. ..+.++.+..+..|+++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gl~v~~ 228 (456)
T TIGR01283 180 KHVIGTREPEPIPVGTTVHDINLIGEFNVA-GEFWHVKPLLEKLGIRVLA 228 (456)
T ss_pred HHHhccCCcccccccCCCCcEEEEcCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 3321 3568888855532 2333444446666766554
No 123
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=53.71 E-value=50 Score=32.10 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=50.4
Q ss_pred HHHHHcCccceEeecCCcHHHHHHHHHHHHhc---CCCeeEeeecCCccccCccccChhhHHHhcCceEEEccc
Q 021542 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 184 ~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
..+-+.|-+..||..+.+++++++.++.++.. +-+|-+|-+ .++-++..+ .++++.|.++||.++..+.
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e-~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELE-EGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhH-HHHHHHHHHcCCCEEEecc
Confidence 34567899999999999999999998888763 456777654 333222222 2589999999998876554
No 124
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=53.34 E-value=10 Score=27.62 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhcCCChhHhh
Q 021542 284 RNLQPLLNRIKELGENYSKTSTQAS 308 (311)
Q Consensus 284 ~~~~~~l~~l~~iA~~~g~s~~q~a 308 (311)
++..+.+.+|.++|++.|++.++++
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc 72 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELC 72 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4688889999999999999999886
No 125
>PLN02428 lipoic acid synthase
Probab=52.99 E-value=2.1e+02 Score=27.17 Aligned_cols=164 Identities=14% Similarity=0.198 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHCCCCeEECC-c---ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTA-E---VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta-~---~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (311)
+.++..++.+.+.+.|++++=.. . .|.++. -..+.+.++...... -.+.|..=.. ++..+
T Consensus 131 d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~p----df~~d--- 194 (349)
T PLN02428 131 DPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVP----DFRGD--- 194 (349)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCc----cccCC---
Confidence 45677778888888899866321 1 232221 345555555543211 1333333211 11111
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC------------CCcHHHHHHHHHHHHc--Cccc----eEeecCCcHHHHHHHHH
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK----AVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~------------~~~~~~~~~l~~l~~~--G~ir----~iGvs~~~~~~~~~~~~ 210 (311)
++.|+.|.-.-+|.+. |+++. ...++.++.|+.+++. |..- -+|+ +-+.+++.+.+.
T Consensus 195 ---~elL~~L~eAG~d~i~-hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDVFA-HNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCEEc-cCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 3344444333466644 55543 1246789999999988 7653 3677 567788888888
Q ss_pred HHHhcCCCeeEe-e--------ecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 211 KLKKRGIPLASN-Q--------VNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 211 ~~~~~~~~~~~~-q--------~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
.+++.++.+..+ | ++++.+....+-..+-+++.+.|...++.+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 877766433222 2 2222222221112477788888999999888875
No 126
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=52.15 E-value=1.8e+02 Score=28.95 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--cHHHHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~l~~l~ 187 (311)
++.|-++|++.....+.+-++|.+-+ ..+-|-..++...+.++.+.++++.++-|++.. ....-.+|+.++
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 77777887765433223445555544 334444555555666665568899999988732 122222222222
Q ss_pred --------------HcCccceEeecCC---cHHHHHHHHHHHHhcCCCeeEe
Q 021542 188 --------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 188 --------------~~G~ir~iGvs~~---~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
+.++|.-||.++. .+..+.++.+..+..|+.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 2456888998763 4566677777777777766544
No 127
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=51.94 E-value=48 Score=28.82 Aligned_cols=74 Identities=30% Similarity=0.368 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
...+.+.+++.++.+|.+ +.++ .+...+.....+.++++.++| +..|=++..++..+...++.+...|+|+..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~---~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV---FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE---EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe---CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 456888999999999864 3333 222345688889999999888 8888888887766666767677777765553
No 128
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=51.78 E-value=68 Score=26.15 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC-CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++ ....+..|++.+.++++... ....|++++..+.. .+..++...|..+.++
T Consensus 47 RlG~sVSKKvg---~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFG---KAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccc---cchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 67889999986 35788889999999988763 34689999988765 4555666666665544
No 129
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.53 E-value=1.2e+02 Score=29.46 Aligned_cols=109 Identities=9% Similarity=0.042 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCCCC-----cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~-~d~iDl~~lh~p~~~~-----~~~~~~~l 183 (311)
|+-+-++|++.....+.+=++|.|-+... .-.+.+...+++.-++.- ...+.++.+|-|++.. .+.++++|
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~e---iIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLTE---TRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccc---ccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 77777777665432224567777776432 222233333333222210 0147789999998742 23333333
Q ss_pred HH-H--------HHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 184 GD-A--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~~-l--------~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
-+ + ++.++|.-||-++.++..+.++.+..+..|+++.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 21 2 23466888886666677778887778888877644
No 130
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.53 E-value=26 Score=33.79 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHh--cCceEEEcc
Q 021542 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE--LGITLIAYC 253 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~--~gi~v~a~s 253 (311)
.-.+.+++.+..++++ ++.+.+++.+.+.++.--+.|+.|..+....|. +.++.+++ +=++++.+
T Consensus 120 TVPiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~--------~~~~~~~~~~R~~giVSR- 186 (431)
T PRK13352 120 TVPIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTR--------ETLERLKKSGRIMGIVSR- 186 (431)
T ss_pred ChhHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH--------HHHHHHHhcCCccCeecC-
Confidence 3456666666655543 677888888887777655566667665444322 36666664 33455543
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChh
Q 021542 254 PIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 254 ~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~ 305 (311)
++.+++.+..... -.++ ..+..+.|-+|+++|++|++
T Consensus 187 --GGs~~~~WM~~n~---------~ENP----lye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 187 --GGSFLAAWMLHNN---------KENP----LYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred --CHHHHHHHHHHcC---------CcCc----hHHHHHHHHHHHHHhCeeee
Confidence 3334443332210 0011 12223378889999988754
No 131
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=51.15 E-value=61 Score=31.17 Aligned_cols=85 Identities=9% Similarity=-0.089 Sum_probs=57.6
Q ss_pred ccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhh
Q 021542 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKA 240 (311)
Q Consensus 162 ~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~ 240 (311)
..++.++..|-+. +-++.+.+|++.-.|. ..|-|-++.+.+.++++. --++++|....-.----.-..+.+
T Consensus 231 ~~~l~~iEeP~~~---~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~ 302 (404)
T PRK15072 231 PYRLFWLEDPTPA---ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIAD 302 (404)
T ss_pred ccCCcEEECCCCc---cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHH
Confidence 3577777776432 2367778888876665 777788889999888664 247777776655432111124888
Q ss_pred HHHhcCceEEEccc
Q 021542 241 ACDELGITLIAYCP 254 (311)
Q Consensus 241 ~~~~~gi~v~a~s~ 254 (311)
+|+.+|+.+..++.
T Consensus 303 lA~~~gi~~~~h~~ 316 (404)
T PRK15072 303 FAALYQVRTGSHGP 316 (404)
T ss_pred HHHHcCCceeeccC
Confidence 99999999987654
No 132
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.05 E-value=1.2e+02 Score=28.63 Aligned_cols=91 Identities=18% Similarity=0.098 Sum_probs=61.8
Q ss_pred eEEeecCCC------------CCcHHHHHHHHHHHHc--Ccc--ceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLV--KAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~l~~l~~~--G~i--r~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
.+.||.|+. ++.+++++++.+..+. ++| -++=+. |.+.+++.++.+.++ +++..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 478898764 3467888888886544 332 344443 667888999988775 34677899999
Q ss_pred CccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
|+........ ...+..+++||.+......+.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 9865422111 356667889999988766553
No 133
>PRK09989 hypothetical protein; Provisional
Probab=51.01 E-value=1.3e+02 Score=26.70 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=30.0
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..++.|++.|...+... .|.+.. . ...........+.+.++.++|+++|+++
T Consensus 89 ~~i~~A~~lg~~~v~v~---~g~~~~---------~----~~~~~~~~~~~~~l~~l~~~a~~~gv~l 140 (258)
T PRK09989 89 LALEYALALNCEQVHVM---AGVVPA---------G----EDAERYRAVFIDNLRYAADRFAPHGKRI 140 (258)
T ss_pred HHHHHHHHhCcCEEEEC---ccCCCC---------C----CCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 47888899999876321 121110 0 0012233445666778888888888754
No 134
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=50.96 E-value=1.6e+02 Score=25.25 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
.+.++..++++.+.+.|+.-+=+.+.+ -+...+.+++ ..+.+.+=++........+.....+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~ev 75 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEA 75 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHH
Confidence 456899999999999776554332211 2222233332 3455555554432335566677778
Q ss_pred HHHHHHhCCCccceEEeecCC-CCCcHHHHHHHHHHHHc--Cccc--eEeecCCcHHHHHHHHHHHHhcCCCeeEeeec-
Q 021542 152 KDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~-~~~~~~~~~~l~~l~~~--G~ir--~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~- 225 (311)
++.++ +|.|-||++.--..- ....+++++.|.++++. |+.- -+...-.+.+.+..+.+.+.+.|. +++...
T Consensus 76 e~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga--D~IKTsT 152 (203)
T cd00959 76 REAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA--DFIKTST 152 (203)
T ss_pred HHHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEcCC
Confidence 88876 699999987654321 12345677778777776 4432 234444567888888888777654 445554
Q ss_pred -CCccccCccccChhhHHHhcCceEEE
Q 021542 226 -YSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 226 -~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
|..-....+.-.++...-+..++|.+
T Consensus 153 G~~~~~at~~~v~~~~~~~~~~v~ik~ 179 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVGGRVGVKA 179 (203)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCceEEE
Confidence 64333222211233222224567766
No 135
>PLN02363 phosphoribosylanthranilate isomerase
Probab=50.92 E-value=55 Score=29.55 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=49.1
Q ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHH
Q 021542 132 ATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAY 209 (311)
Q Consensus 132 ~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~~~~~~ 209 (311)
..|+.. -.+.+.++.+. ++|.|+|=+++.. .|...+.+.+-+.. +......+..+||. |-+++.+.+++
T Consensus 48 ~VKICG---it~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a~~I~-~~l~~~~~~~VgVfv~~~~~~I~~~~ 118 (256)
T PLN02363 48 LVKMCG---ITSARDAAMAV-----EAGADFIGMILWPKSKRSISLSVAKEIS-QVAREGGAKPVGVFVDDDANTILRAA 118 (256)
T ss_pred eEEECC---CCcHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHHHHHH-HhccccCccEEEEEeCCCHHHHHHHH
Confidence 356642 24556565555 4899999987543 23334444433333 33332236779985 67888888886
Q ss_pred HHHHhcCCCeeEeeecC
Q 021542 210 EKLKKRGIPLASNQVNY 226 (311)
Q Consensus 210 ~~~~~~~~~~~~~q~~~ 226 (311)
+. ..++++|+.-
T Consensus 119 ~~-----~~ld~VQLHG 130 (256)
T PLN02363 119 DS-----SDLELVQLHG 130 (256)
T ss_pred Hh-----cCCCEEEECC
Confidence 65 5789999874
No 136
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=50.88 E-value=85 Score=30.55 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCC-eeEeeecCCccccCccccChhhHHHhcCceEEEcc
Q 021542 179 FIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (311)
Q Consensus 179 ~~~~l~~l~~~G~-ir~iGvs~~~~~~~~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s 253 (311)
+.+..+.|+++|. |+++.+.+-....+.++.+..+.. .+ +.+.-+...+.-..+.+ ++...|++.||.++.=.
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~Vnn~~gv~~Pv~-EI~~icr~~~v~v~~Da 218 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHVNNEIGVLQPVK-EIVKICREEGVQVHVDA 218 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEecccCccccccHH-HHHHHhCcCCcEEEeeh
Confidence 4455555666664 366666654444444443332211 11 22222222222222222 46777777777665433
No 137
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=50.69 E-value=1.4e+02 Score=26.95 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (311)
.+.++.|++.|=-.|=.+.+||| =++++.+|.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 45677777777666667778887 567777777654 344444443 2234556666666666
Q ss_pred hCCCcc
Q 021542 158 LGLSSV 163 (311)
Q Consensus 158 L~~d~i 163 (311)
.|.+.|
T Consensus 170 ~g~~~i 175 (295)
T PF03279_consen 170 FGIELI 175 (295)
T ss_pred cCCeEe
Confidence 665433
No 138
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.67 E-value=1.1e+02 Score=26.89 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=29.7
Q ss_pred hhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 238 VKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 238 ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.++.|++.|...+...+ |... . .....+......+.++++.++|+++|+++
T Consensus 89 ~i~~a~~lg~~~i~~~~---g~~~---------~----~~~~~~~~~~~~~~l~~l~~~A~~~gi~l 139 (254)
T TIGR03234 89 AIAYARALGCPQVNCLA---GKRP---------A----GVSPEEARATLVENLRYAADALDRIGLTL 139 (254)
T ss_pred HHHHHHHhCCCEEEECc---CCCC---------C----CCCHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 78889999998775221 2110 0 00112334455566777888888888653
No 139
>PLN02681 proline dehydrogenase
Probab=50.63 E-value=2.6e+02 Score=27.56 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHCCCC-eEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin-~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
+...+++++|.+.|+. +||.=+.|=+... ..+.-+..+.+.+...+.-++++--.- -..+.+.+...++.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~ 290 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHH
Confidence 4566789999999999 5787555544322 333333334432100023455554441 23566777777776
Q ss_pred HHHH---hCC-----Cccce-----EEeecCCC-CC-c----HHHHHHHHHHHH---cCccceEeecCCcHHHHHHHHHH
Q 021542 154 SLFR---LGL-----SSVEL-----YQLHWAGI-WG-N----EGFIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 154 sL~~---L~~-----d~iDl-----~~lh~p~~-~~-~----~~~~~~l~~l~~---~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
+.+. +|+ -|+|- -.+.||++ .+ . .-.-+.++.+.+ .|. .++.+.+|+.+.+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHH
Confidence 6543 121 23332 12223333 11 1 122333444444 344 4889999999999999888
Q ss_pred HHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
.++.++++.-..++|-.+..-.+ ++-....+.|-.+.-|.|+|.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 88777654322222222222222 355566677888888888774
No 140
>PRK05414 urocanate hydratase; Provisional
Probab=50.29 E-value=42 Score=33.31 Aligned_cols=101 Identities=11% Similarity=0.020 Sum_probs=68.4
Q ss_pred chHHHHHHHHHhccCCCCCCcEEEEecCCCCCC----------------CCCHHHHHHHHHHHHHHhCCCccceEEeecC
Q 021542 108 NSETLLGRFIKERKQRDPEVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (311)
Q Consensus 108 ~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~----------------~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p 171 (311)
+-|.++.-+=+..... -+.++||++-+|.+.. ..+++ ..-+|+.+.|+|.+-
T Consensus 149 TyeT~~~a~rk~f~g~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~-------ri~kR~~~gyld~~~---- 216 (556)
T PRK05414 149 TYETFAEAARQHFGGD-LAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDES-------RIDKRLRTGYLDEKA---- 216 (556)
T ss_pred HHHHHHHHHHHhcCCC-CceeEEEEecCCccccccHHHHHhcCceEEEEEECHH-------HHHHHHhCCcceeEc----
Confidence 3355554443333211 2578999999886421 12333 334578889998542
Q ss_pred CCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE--eeecC
Q 021542 172 GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (311)
Q Consensus 172 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~--~q~~~ 226 (311)
.+.+++++..++.+++|+..+||+-.--.+.+.++++. ++.|++ .|...
T Consensus 217 --~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~----~i~pDlvtDQTSa 267 (556)
T PRK05414 217 --DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR----GIRPDLVTDQTSA 267 (556)
T ss_pred --CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc----CCCCCccCcCccc
Confidence 56889999999999999999999999888888887543 565554 56654
No 141
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=50.28 E-value=2.2e+02 Score=26.54 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH---
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL--- 148 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~--- 148 (311)
.+.++..+.++.+.+.|++.|-.......... .+.+-+.++.... ...-+ ++ +..++..+.
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~----~~~~i--~~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKA----RFPHI--HI----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHH----HCCCc--CC----CCCCHHHHHHHh
Confidence 56688888899999999987765322211111 3333333333210 10011 11 112332221
Q ss_pred -------HHHHHHHHHhCCCccceE--E-ee-------cCCCCCcHHHHHHHHHHHHcCccc----eEeecCCcHHHHHH
Q 021542 149 -------AALKDSLFRLGLSSVELY--Q-LH-------WAGIWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRN 207 (311)
Q Consensus 149 -------~~l~~sL~~L~~d~iDl~--~-lh-------~p~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~~~~ 207 (311)
+..-+.|++.|++.++.. . ++ .|...+.++.+++++.+++.|.-- -+|+ +.+.+++.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 344455667788877631 1 10 011124667899999999998532 2454 566777776
Q ss_pred HHHHHHhcC
Q 021542 208 AYEKLKKRG 216 (311)
Q Consensus 208 ~~~~~~~~~ 216 (311)
.+..+++.+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666666554
No 142
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=50.11 E-value=1.7e+02 Score=27.82 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=59.4
Q ss_pred EeecCCC------------CCcHHHHHHHHHHH-HcCc---cceEeecCC--cHHHHHHHHHHHHhcCCCeeEeeecCCc
Q 021542 167 QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 167 ~lh~p~~------------~~~~~~~~~l~~l~-~~G~---ir~iGvs~~--~~~~~~~~~~~~~~~~~~~~~~q~~~n~ 228 (311)
-||.++. ++.+++++++.++. +.|+ |+++=+.++ +.++++++.+.++.. +..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l--~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGI--KAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCC
Confidence 4888775 23467888887554 4454 466666654 688888888876643 56789999998
Q ss_pred cccCccc----c---ChhhHHHhcCceEEEcccccc
Q 021542 229 IYRKPEE----N---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 229 ~~~~~~~----~---~ll~~~~~~gi~v~a~s~l~~ 257 (311)
+...... . ...+..+++||.+......+.
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 7643211 1 245567778999988766553
No 143
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=49.94 E-value=41 Score=33.27 Aligned_cols=107 Identities=10% Similarity=0.003 Sum_probs=68.7
Q ss_pred chHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH----------HHHHHHHHHhCCCccceEEeecCCCCCcH
Q 021542 108 NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL----------AALKDSLFRLGLSSVELYQLHWAGIWGNE 177 (311)
Q Consensus 108 ~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~----------~~l~~sL~~L~~d~iDl~~lh~p~~~~~~ 177 (311)
+-|.++.-+=+.....- +.++||++-+|.+... .+..+. -.-...-+|+.+.|+|.+. .+.+
T Consensus 140 TyeT~~~aark~f~~~L-~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ld 211 (545)
T TIGR01228 140 TYETFAELARQHFGGSL-KGKWVLTAGLGGMGGA-QPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLD 211 (545)
T ss_pred HHHHHHHHHHHhcCCCC-ceeEEEEeCCCccccc-cHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHH
Confidence 33555544433333221 6789999998864211 111100 1112334578888998542 4688
Q ss_pred HHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE--eeecC
Q 021542 178 GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (311)
Q Consensus 178 ~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~--~q~~~ 226 (311)
++++..++.+++|+..+||+-.--.+.+.++++. ++.|++ .|...
T Consensus 212 eal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSa 258 (545)
T TIGR01228 212 EALARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSA 258 (545)
T ss_pred HHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCcc
Confidence 9999999999999999999999888888887543 565554 56654
No 144
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.49 E-value=2.1e+02 Score=26.98 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccC--CCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCccceEEeecCCC------------C
Q 021542 110 ETLLGRFIKERKQ--RDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI------------W 174 (311)
Q Consensus 110 E~~lg~aL~~~~~--~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~-~d~iDl~~lh~p~~------------~ 174 (311)
-+.+-++++.... ..+...+.|+| +|. .+.+++-.+..+++|+ .+....+.||.++. +
T Consensus 164 ~~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~ 236 (345)
T PRK14457 164 IDEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNY 236 (345)
T ss_pred HHHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCC
Confidence 3445566655421 01123566666 321 1223333333333332 34457789998875 2
Q ss_pred CcHHHHHHHHH-HHHcCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc----c---ChhhH
Q 021542 175 GNEGFIDGLGD-AVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----N---GVKAA 241 (311)
Q Consensus 175 ~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~---~ll~~ 241 (311)
+.+++++++.+ +.+.|+ |+++=+. |.+.+.++++.+.++.. +..++-++||++...... . .+.+.
T Consensus 237 ~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l--~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~ 314 (345)
T PRK14457 237 PIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGF--QSHVNLIPYNPIDEVEFQRPSPKRIQAFQRV 314 (345)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcC--CCeEEEecCCCCCCCCCCCCCHHHHHHHHHH
Confidence 35677777755 455563 4666565 45678888888876543 457888999997643221 1 34566
Q ss_pred HHhcCceEEEcccccc
Q 021542 242 CDELGITLIAYCPIAQ 257 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~ 257 (311)
.+++||.+......+.
T Consensus 315 L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 315 LEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHCCCeEEEeCCCCC
Confidence 7778999887666553
No 145
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=49.01 E-value=49 Score=28.82 Aligned_cols=73 Identities=22% Similarity=0.181 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCe
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~~~~~~~~~~~~~~~~ 219 (311)
.+.+.++.+ ..+|.|++=+++.. .|...+.+.+-+....+ .+.+..+||. |-+++.+.++++. ..+
T Consensus 11 ~~~eda~~~-----~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~ 78 (210)
T PRK01222 11 TTPEDAEAA-----AELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPL 78 (210)
T ss_pred CcHHHHHHH-----HHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCC
Confidence 344544443 35899999887433 33333333333332222 3568899987 5578888888654 578
Q ss_pred eEeeecC
Q 021542 220 ASNQVNY 226 (311)
Q Consensus 220 ~~~q~~~ 226 (311)
+++|+.-
T Consensus 79 d~vQLHg 85 (210)
T PRK01222 79 DLLQLHG 85 (210)
T ss_pred CEEEECC
Confidence 9999864
No 146
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=48.78 E-value=1.9e+02 Score=28.65 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHH----cCccceEeec--CCcHHHHHHHHHHHHhc
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE----QGLVKAVGVS--NYSEKRLRNAYEKLKKR 215 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~----~G~ir~iGvs--~~~~~~~~~~~~~~~~~ 215 (311)
.+.+.|.+.++. ++..|...+-|+.=..|...+.+.+.+.++.+++ .|.|+.|+++ ..+.++++++.+ .
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke----a 189 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE----A 189 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH----c
Confidence 467888888875 5678877776643233333566777777777775 4677766664 446677777644 3
Q ss_pred CC-CeeEeeecCCccc-----cCc------cccChhhHHHhcCceEEEc
Q 021542 216 GI-PLASNQVNYSLIY-----RKP------EENGVKAACDELGITLIAY 252 (311)
Q Consensus 216 ~~-~~~~~q~~~n~~~-----~~~------~~~~ll~~~~~~gi~v~a~ 252 (311)
|+ ...++|--||.-. +.. .+-+.++.+.+.||.-+..
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 54 4666777765311 110 1114788888999874443
No 147
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=48.69 E-value=2.3e+02 Score=31.63 Aligned_cols=126 Identities=6% Similarity=-0.016 Sum_probs=73.5
Q ss_pred HhCCCccceEEeecCCCCCcHHHHHHHHHHHHc-Ccc--ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc
Q 021542 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (311)
Q Consensus 157 ~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~-G~i--r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (311)
+-|.+.||+-.= .+ ..+.++.+..+..+..+ -.+ --|-+-+++++.++.+++.+. .++.+|-+..--.+...
T Consensus 379 e~GA~iIDVn~~-~~-~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~---G~~IINsIs~~~g~~~~ 453 (1178)
T TIGR02082 379 ENGAQILDINVD-YG-MLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQ---GKCIVNSISLKDGEERF 453 (1178)
T ss_pred HCCCCEEEECCC-CC-CCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcC---CCCEEEeCCCCCCCccH
Confidence 458899998642 11 13444555555544443 223 347888999999999977632 24555544321121111
Q ss_pred cccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHh-cCCChhHhhh
Q 021542 234 EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGEN-YSKTSTQAST 309 (311)
Q Consensus 234 ~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~-~g~s~~q~al 309 (311)
+ ++++.|+++|..++.+.--..|. +...++-.+.++++.+.+.+ +|+++.++.+
T Consensus 454 ~--~~~~l~~~yga~vV~m~~de~G~--------------------p~t~e~r~~i~~~~~~~~~~~~Gi~~edIi~ 508 (1178)
T TIGR02082 454 I--ETAKLIKEYGAAVVVMAFDEEGQ--------------------ARTADRKIEICKRAYNILTEKVGFPPEDIIF 508 (1178)
T ss_pred H--HHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 1 48999999999999986444442 00111123344456666665 9999888754
No 148
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.68 E-value=2.4e+02 Score=26.66 Aligned_cols=82 Identities=13% Similarity=0.078 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHHHc-Cc---cceEee--cCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCcccc-------Chhh
Q 021542 174 WGNEGFIDGLGDAVEQ-GL---VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN-------GVKA 240 (311)
Q Consensus 174 ~~~~~~~~~l~~l~~~-G~---ir~iGv--s~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~-------~ll~ 240 (311)
++.+++++++.+..+. |+ +-++=+ -|.+++++.++.+.++ +.++.++-++||+........ .+.+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4677888888777644 42 123323 3678899988877754 356788999999876532211 4667
Q ss_pred HHHhcCceEEEcccccc
Q 021542 241 ACDELGITLIAYCPIAQ 257 (311)
Q Consensus 241 ~~~~~gi~v~a~s~l~~ 257 (311)
..+++||.+......+.
T Consensus 301 ~L~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHHHCCceEEEECCCCC
Confidence 78889999988777654
No 149
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=48.39 E-value=1.4e+02 Score=28.31 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=62.7
Q ss_pred Cccce---EEeecCCC------------CCcHHHHHHHHHHHHcCccceEee-------cCCcHHHHHHHHHHHHhcCCC
Q 021542 161 SSVEL---YQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGV-------SNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 161 d~iDl---~~lh~p~~------------~~~~~~~~~l~~l~~~G~ir~iGv-------s~~~~~~~~~~~~~~~~~~~~ 218 (311)
+.+|+ +.||.|+. ++.++.+++.+...+... +.|-+ -|.+.++.+++++..+ +++
T Consensus 208 ~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~ 284 (349)
T COG0820 208 EQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIP 284 (349)
T ss_pred hcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCC
Confidence 44554 77898864 346788888877776544 44433 2566888888877654 345
Q ss_pred eeEeeecCCccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 219 LASNQVNYSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
..++-++||++.....+. ...+...++||.+.....-+.
T Consensus 285 ~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 285 CKVNLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred ceEEEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 589999999998765332 245556677888887766554
No 150
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=48.15 E-value=1.2e+02 Score=23.13 Aligned_cols=76 Identities=16% Similarity=0.027 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHHHHHCCCCe-EECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021542 70 DDRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~-~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (311)
++.+.++..+-|++.+..|.+. ++-++.- + +|...+-..|++.. ...+++.+.
T Consensus 9 P~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r---------------------~----~r~~~W~mW~~p~~-~~~~~~~Vl 62 (99)
T PF00101_consen 9 PPLTDEEIAKQVRYLLSQGWIIGIEHADPR---------------------R----FRTSYWQMWKLPMF-GCTDPAQVL 62 (99)
T ss_dssp S---HHHHHHHHHHHHHTT-EEEEEEESCG---------------------G----STSSS-EEESSEBT-TBSSHHHHH
T ss_pred CCCCHHHHHHHHHhhhhcCceeeEEecCCC---------------------C----CCCCEeecCCCCCc-CCCCHHHHH
Confidence 3466799999999999999874 4422111 1 15666777777653 346889999
Q ss_pred HHHHHHHHHhCCCccceEEeecC
Q 021542 149 AALKDSLFRLGLSSVELYQLHWA 171 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p 171 (311)
..|++.++.---+||=|+-+...
T Consensus 63 ~el~~c~~~~p~~yVRlig~D~~ 85 (99)
T PF00101_consen 63 AELEACLAEHPGEYVRLIGFDNK 85 (99)
T ss_dssp HHHHHHHHHSTTSEEEEEEEETT
T ss_pred HHHHHHHHhCCCceEEEEEEcCc
Confidence 99999999999899988777653
No 151
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.84 E-value=81 Score=28.20 Aligned_cols=132 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccCCCCCC--cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CCcHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEV--EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~--~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~l~ 184 (311)
+.++.++++..... +. .+.++..+.. .......+...+.+.+++.+.+.- -+.+.-.+. ...+.+...+.
T Consensus 69 ~~v~~~a~~~~~~~--~~~~~~~l~iNis~--~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~ 143 (256)
T COG2200 69 RWVLEEACRQLRTW--PRAGPLRLAVNLSP--VQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLR 143 (256)
T ss_pred HHHHHHHHHHHHhh--hhcCCceEEEEcCH--HHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHH
Confidence 66777777665421 12 3777777754 223344566678888888876543 444443333 23446888999
Q ss_pred HHHHcCccceEeecCCc--HHHHHHHHHHHHhcCCCeeEeeecCCccccCccc-------cChhhHHHhcCceEEEccc
Q 021542 185 DAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 185 ~l~~~G~ir~iGvs~~~--~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~ll~~~~~~gi~v~a~s~ 254 (311)
+|++.| -.|.+.+|. -..+..+.+ .+|+++-+.-+.+..-... ..++..|++.|+.++|-+.
T Consensus 144 ~L~~~G--~~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV 214 (256)
T COG2200 144 QLRELG--VRIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV 214 (256)
T ss_pred HHHHCC--CeEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec
Confidence 999999 345566663 233444432 4777776666655532211 1488999999999998554
No 152
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.63 E-value=2.2e+02 Score=25.94 Aligned_cols=134 Identities=8% Similarity=0.041 Sum_probs=62.7
Q ss_pred ChhhHHHHHHHHHHHHHCC-CCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-----------
Q 021542 70 DDRKMKAAKAAFDTSLDNG-ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA----------- 137 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~G-in~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~----------- 137 (311)
..+|.+...+.++..++.| ++-|=..-..|-+.+-....-++++-.+.+... .|-.+++.+-...
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHHHHHHHH
Confidence 3577888888888888888 876644333332111001112333333443332 1233343332211
Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHH
Q 021542 138 -------------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (311)
Q Consensus 138 -------------~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 204 (311)
.....+.+.+...+++..+. ++.+++++-|.|......-..+.+.+|.+...|..|=-|+.+..+
T Consensus 93 ~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~--~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~ 170 (290)
T TIGR00683 93 TELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE--TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYL 170 (290)
T ss_pred HHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhh--CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 00123445555555555543 334666666666543333233444445544444443344444455
Q ss_pred HHHH
Q 021542 205 LRNA 208 (311)
Q Consensus 205 ~~~~ 208 (311)
+.++
T Consensus 171 ~~~~ 174 (290)
T TIGR00683 171 LERL 174 (290)
T ss_pred HHHH
Confidence 4444
No 153
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=47.41 E-value=1.1e+02 Score=25.58 Aligned_cols=79 Identities=11% Similarity=-0.051 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeec-CCCCCcHHHHHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVE 188 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~-p~~~~~~~~~~~l~~l~~ 188 (311)
-+.+|+||++..... +.++.|+++ ..+...+...+.++.+. ...+-+- |+ .+...+++.++.+.+
T Consensus 34 a~~~a~~L~~~~~~~--D~VL~Spa~----------Ra~QTae~v~~~~~~~~-~~~~~~l~p~-~d~~~~l~~l~~~~d 99 (163)
T COG2062 34 AELVAAWLAGQGVEP--DLVLVSPAV----------RARQTAEIVAEHLGEKK-VEVFEELLPN-GDPGTVLDYLEALGD 99 (163)
T ss_pred HHHHHHHHHhcCCCC--CEEEeChhH----------HHHHHHHHHHHhhCccc-ceeccccCCC-CCHHHHHHHHHHhcc
Confidence 456899999887532 567777776 45566666677777332 2222111 21 356677777777777
Q ss_pred cCccceEeecCCcHHH
Q 021542 189 QGLVKAVGVSNYSEKR 204 (311)
Q Consensus 189 ~G~ir~iGvs~~~~~~ 204 (311)
-+..+.+.+|+|.-
T Consensus 100 --~v~~vllVgH~P~l 113 (163)
T COG2062 100 --GVGSVLLVGHNPLL 113 (163)
T ss_pred --cCceEEEECCCccH
Confidence 58899999998753
No 154
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.37 E-value=2.7e+02 Score=26.91 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------cHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~ 182 (311)
|+-|-++|++.....+. +-++|.|-+... .=.+.+..-+++.-++++ ++++.++-|.+.. .....++
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~---iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPVG---LIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCChHH---HhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 77788888776544323 557777766431 222233333444333443 6889999888633 1222222
Q ss_pred HH-HHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 183 LG-DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 183 l~-~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+. .+. +.++|.-||-.++. ..+.++.+..+..|+++.+
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~-~d~~el~~lL~~~Gi~v~~ 203 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIG-GDAWASRILLEEMGLRVVA 203 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCC-ccHHHHHHHHHHcCCeEEE
Confidence 22 222 13568888865553 3344444556667766543
No 155
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=47.31 E-value=1.8e+02 Score=24.68 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCC-CC-CchHHHHHHHHHhccCCCCCCcEEEEecCCC---CCCCCCHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF-GA-INSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVLA 149 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~-~~-~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~---~~~~~~~~~i~~ 149 (311)
+.+..+|-.++..|-..+ ..|||.|- ++ +-+++++|++-++++.. --+-|+|-... ...++.++.+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl----~cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~v-- 98 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVL----ACGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEV-- 98 (176)
T ss_pred HHHHHHHHHHHHcCCEEE----EECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHH--
Confidence 667778888899998888 45777662 12 46788888888776532 45666655543 1245666654
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~ 209 (311)
+.+..+.+|. .=|+++==.+.- -..-++++++..++.| +.-||+++-+--.+..+.
T Consensus 99 -FsRqveA~g~-~GDvLigISTSG-NS~nVl~Ai~~Ak~~g-m~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 99 -FSRQVEALGQ-PGDVLIGISTSG-NSKNVLKAIEAAKEKG-MTVIALTGKDGGKLAGLL 154 (176)
T ss_pred -HHHHHHhcCC-CCCEEEEEeCCC-CCHHHHHHHHHHHHcC-CEEEEEecCCCccccccc
Confidence 4555567775 357766555432 4567999999999999 566899988877777764
No 156
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=47.16 E-value=27 Score=28.13 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred ChhhHHHhcCceEEEcccccc
Q 021542 237 GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~ 257 (311)
++++.|+++||.+++|-.+..
T Consensus 48 e~v~a~h~~Girv~ay~~~~~ 68 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFSW 68 (132)
T ss_pred HHHHHHHHCCCEEEEEEeeec
Confidence 689999999999999988874
No 157
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=47.02 E-value=95 Score=27.44 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHHhcCCCeeEe--eecCCccccCc--cccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCC
Q 021542 200 YSEKRLRNAYEKLKKRGIPLASN--QVNYSLIYRKP--EENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRG 275 (311)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~--q~~~n~~~~~~--~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~ 275 (311)
.++.+++.+ +++.|+.+..+ -.+||.|.... +..++.++++..|-.-+...|+..|--.+
T Consensus 49 ~p~a~vka~---Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~------------- 112 (272)
T COG4130 49 TPAAEVKAL---AEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPG------------- 112 (272)
T ss_pred CCHHHHHHH---HHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCC-------------
Confidence 356667766 66667654432 23455555422 22369999999999999999998752111
Q ss_pred CCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 276 RIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 276 ~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
.. ...+....++..|+.|.++||++
T Consensus 113 ~~---vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 113 TA---VRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred cc---cchHHHHHHHHHhhHHHHHhCcc
Confidence 11 11233566677888999999865
No 158
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.93 E-value=1.7e+02 Score=27.68 Aligned_cols=133 Identities=19% Similarity=0.115 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCC----CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC------------
Q 021542 110 ETLLGRFIKERKQR----DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI------------ 173 (311)
Q Consensus 110 E~~lg~aL~~~~~~----~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~------------ 173 (311)
-+.+-++++..... .+..++.|+|-. . . ..++ .|...+...+++ -||.++.
T Consensus 171 ~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G----~---~----~~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~ 237 (354)
T PRK14460 171 LDEVMRSLRTLNNEKGLNFSPRRITVSTCG----I---E----KGLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAAR 237 (354)
T ss_pred HHHHHHHHHHHhhhhccCCCCCeEEEECCC----C---h----HHHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCcccc
Confidence 44455666654311 011257777744 1 1 2233 344555544444 5777664
Q ss_pred CCcHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCcccc-------Chhh
Q 021542 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEEN-------GVKA 240 (311)
Q Consensus 174 ~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~-------~ll~ 240 (311)
.+.+++++++.+...+ |+ |+++=+. |.+.++++++.+.++.. +..++-++||++....... .+.+
T Consensus 238 ~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~--~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~ 315 (354)
T PRK14460 238 WPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT--KCKLNLIVYNPAEGLPYSAPTEERILAFEK 315 (354)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC--CCcEEEEcCCCCCCCCCCCCCHHHHHHHHH
Confidence 2356788887765443 22 3333333 55678888888877643 4567888999875432111 3566
Q ss_pred HHHhcCceEEEcccccc
Q 021542 241 ACDELGITLIAYCPIAQ 257 (311)
Q Consensus 241 ~~~~~gi~v~a~s~l~~ 257 (311)
..+++||.+......+.
T Consensus 316 ~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 316 YLWSKGITAIIRKSKGQ 332 (354)
T ss_pred HHHHCCCeEEEeCCCCC
Confidence 67788999887766553
No 159
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=46.77 E-value=84 Score=24.91 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=47.2
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC---ccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d---~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
+|=-+.|+-|+|. ...+..+++.|.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 3778999999873 577888999998888887654 369999988765 4566777777776654
No 160
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.67 E-value=49 Score=25.48 Aligned_cols=72 Identities=25% Similarity=0.162 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-CC-------------
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LP------------- 139 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~-~~------------- 139 (311)
+.-....---++++|.-|+-|-..|--|+ |.++---|-+.+ +++++++|+.- .+
T Consensus 19 ~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~p-----ekl~vagkVaWitP~gt~sr~~GiGv~ 86 (117)
T COG3215 19 MALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDFP-----EKLPVAGKVAWITPVGTQSRPAGIGVQ 86 (117)
T ss_pred HHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCch-----hhccccceEEEEccCCCCCCCCceeee
Confidence 34444555556799999999999998774 777766666655 78888888741 11
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q 021542 140 --WRLGRQSVLAALKDSLFR 157 (311)
Q Consensus 140 --~~~~~~~i~~~l~~sL~~ 157 (311)
.+..-..+|.+||..|-.
T Consensus 87 f~d~e~g~~vr~~IE~~Lg~ 106 (117)
T COG3215 87 FTDGENGLKVRNQIETLLGG 106 (117)
T ss_pred ccCCCchhhHHHHHHHHHHh
Confidence 112335688888887754
No 161
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=46.44 E-value=1.9e+02 Score=25.50 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=59.9
Q ss_pred HHHHHHHHcCccceEeecC--CcHH---HHHHHHHHHHhcCCCeeEeeecCC-ccccCccc--------cChhhHHHhcC
Q 021542 181 DGLGDAVEQGLVKAVGVSN--YSEK---RLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEE--------NGVKAACDELG 246 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvs~--~~~~---~~~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~--------~~ll~~~~~~g 246 (311)
+.++..++.| ...+.+.. .-.. .+.++.+.++..|+.+...+...+ .+...... ...++.|++.|
T Consensus 19 ~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg 97 (274)
T COG1082 19 EILRKAAELG-FDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG 97 (274)
T ss_pred HHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcC
Confidence 3445556666 66666663 2111 255665556677777666555555 34433210 02788899999
Q ss_pred ceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 247 ITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 247 i~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
+..+...+-....- .... . .........+.+.++.++|+++++.+
T Consensus 98 ~~~vv~~~g~~~~~---~~~~-~---------~~~~~~~~~~~l~~l~~~a~~~~i~l 142 (274)
T COG1082 98 AKVVVVHPGLGAGA---DDPD-S---------PEEARERWAEALEELAEIAEELGIGL 142 (274)
T ss_pred CCeEEeecccCCcC---CCCC-C---------CcccHHHHHHHHHHHHHHHHHhCCce
Confidence 88766555332210 0000 0 01111446667778999998887644
No 162
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=46.40 E-value=1.6e+02 Score=27.15 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhc-------cCCCCCCcEEEEecCCCC--------
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-------KQRDPEVEVTVATKFAAL-------- 138 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~-------~~~~~R~~~~i~tK~~~~-------- 138 (311)
++..+++-..++++|-+.++|+..=-....+....+++-+.+.++.. +...-++...|+.-+|+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~Ey 121 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADEY 121 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChhh
Confidence 47788888889999999999875433322211112233332222211 000013455566666652
Q ss_pred --CCCCCHHHHHHHHHHHHHHhCCCccceEEeecC-CCCCcHHHHHHHHHHHHcCccceEeecCCc------HHHHHHHH
Q 021542 139 --PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAY 209 (311)
Q Consensus 139 --~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p-~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~------~~~~~~~~ 209 (311)
.+..+.+.+.+-...-++.|+-.-+|++...-- +....+.+.+.+++. +|=-+|+++-.+ ...+.+++
T Consensus 122 ~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa 198 (300)
T COG2040 122 RGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAA 198 (300)
T ss_pred cCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHH
Confidence 123455655566666777777777999998763 333445556665555 888889988652 35567776
Q ss_pred HHHHhcCCCeeEeeecCCccccCccccChhhHH--HhcCceEEEccc
Q 021542 210 EKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 254 (311)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~--~~~gi~v~a~s~ 254 (311)
++.+.. -.+..+-++ =..++... .+++.. ...|+++++|--
T Consensus 199 ~~~~~~-~~iaa~gvN--C~~p~~~~-a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 199 AILAGL-PNIAALGVN--CCHPDHIP-AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHhcC-cchhheeec--cCChhhhH-HHHHHHHhcCCCCceEEcCC
Confidence 665433 123333333 33333222 266666 444888888865
No 163
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=46.39 E-value=1.3e+02 Score=22.99 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCe-EECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~-~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (311)
+.+.++..+-|++.++.|.+. ++ |.+ . .+ +|...+-+.|+... ...+...|..
T Consensus 11 ~lt~~~i~~QI~yll~qG~~~~lE----~ad----------~-------~~----~~~~yW~mwklP~f-~~~d~~~Vl~ 64 (99)
T cd03527 11 PLTDEQIAKQIDYIISNGWAPCLE----FTE----------P-------EH----YDNRYWTMWKLPMF-GCTDPAQVLR 64 (99)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEE----ccc----------C-------CC----CCCCEEeeccCCCC-CCCCHHHHHH
Confidence 356789999999999999762 22 211 0 11 26788888888763 2367899999
Q ss_pred HHHHHHHHhCCCccceEEeec
Q 021542 150 ALKDSLFRLGLSSVELYQLHW 170 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~ 170 (311)
.|++.++.---+||=|+=+..
T Consensus 65 ei~~C~~~~p~~YVRliG~D~ 85 (99)
T cd03527 65 EIEACRKAYPDHYVRVVGFDN 85 (99)
T ss_pred HHHHHHHHCCCCeEEEEEEeC
Confidence 999999999888888776654
No 164
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=45.85 E-value=2.4e+02 Score=25.79 Aligned_cols=142 Identities=18% Similarity=0.169 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH-
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD- 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~- 153 (311)
.-..++-....++|+|..|....--.. .+.+++..-+.......+.+.++..++.
T Consensus 12 GIVA~Vt~~La~~g~NI~d~sq~~~~~------------------------~~~F~mr~~v~~~~~~~~~~~l~~~l~~~ 67 (280)
T TIGR00655 12 GLVAAISTFIAKHGANIISNDQHTDPE------------------------TGRFFMRVEFQLEGFRLEESSLLAAFKSA 67 (280)
T ss_pred ChHHHHHHHHHHCCCCEEeeeEEEcCC------------------------CCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 334456666779999999977665320 1344443333221123577888888888
Q ss_pred HHHHhCCCccceEEeecCCC--------CCcHHHHHHHHHHHHcCcc--c-eEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 154 SLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--K-AVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~l~~l~~~G~i--r-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
.-+.++.+ +.+|..+. .....-+++|-+..+.|.+ . ..=+||++ .+..+ +++.|+++.+.
T Consensus 68 ~~~~~~l~----i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~---A~~~gIp~~~~ 138 (280)
T TIGR00655 68 LAEKFEMT----WELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHE--DLRSL---VERFGIPFHYI 138 (280)
T ss_pred HHHHhCCE----EEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHH---HHHhCCCEEEc
Confidence 88888865 46666544 1245667777777888864 2 22356764 22333 66677766544
Q ss_pred eecCCccccCccccChhhHHHhcCceEEE
Q 021542 223 QVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 223 q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
... ...+...+..+++.++++++.++.
T Consensus 139 ~~~--~~~~~~~e~~~~~~l~~~~~Dliv 165 (280)
T TIGR00655 139 PAT--KDNRVEHEKRQLELLKQYQVDLVV 165 (280)
T ss_pred CCC--CcchhhhHHHHHHHHHHhCCCEEE
Confidence 322 122222223578888888887764
No 165
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=45.58 E-value=89 Score=30.29 Aligned_cols=87 Identities=7% Similarity=-0.064 Sum_probs=58.2
Q ss_pred cceEEeecCCCC-CcHHHHHHHHHHHHc------CccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc
Q 021542 163 VELYQLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE 235 (311)
Q Consensus 163 iDl~~lh~p~~~-~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~ 235 (311)
+++ ++..|-.. +.++-++.+.+|+++ ..--..+-+-++.+.+.++++. --.+++|+..+-+---.+.
T Consensus 264 ~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a 337 (408)
T TIGR01502 264 FHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNI 337 (408)
T ss_pred CCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHH
Confidence 344 77777542 224567778888766 3334666777788888888664 3467777776654332222
Q ss_pred cChhhHHHhcCceEEEcccc
Q 021542 236 NGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 236 ~~ll~~~~~~gi~v~a~s~l 255 (311)
..+.++|+++||.+...+..
T Consensus 338 ~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 338 ARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 35899999999999986654
No 166
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=45.28 E-value=82 Score=29.84 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCC----CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGIW----GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
.-+..+-+.|.++|+++|++-..-.|... +.+++++.+. +...++..++. .+...++.+++. +.....
T Consensus 68 e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~----g~~~v~ 139 (347)
T PLN02746 68 SVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAA----GAKEVA 139 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHc----CcCEEE
Confidence 35566777799999999999765555432 2345555554 33335555554 477888888664 232222
Q ss_pred eeecCCccccC------ccc-----cChhhHHHhcCceEEEc
Q 021542 222 NQVNYSLIYRK------PEE-----NGVKAACDELGITLIAY 252 (311)
Q Consensus 222 ~q~~~n~~~~~------~~~-----~~ll~~~~~~gi~v~a~ 252 (311)
+-+..|..+.. .++ .+++++++++|+.+.++
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 22222222111 111 14788999999988533
No 167
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=44.94 E-value=3.1e+02 Score=26.90 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCc---HH---HHHH
Q 021542 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN---EG---FIDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~---~~---~~~~ 182 (311)
|+-|-++|++.....| .+-++|.|-+.. ..-.+.+...+++.-++. .-++++.+|-|++.+. .. +.++
T Consensus 111 ~~kL~~aI~~~~~~~~~p~~I~V~tTC~~---elIGDDi~~v~~~~~~~~--~~~~vi~v~tpgf~g~s~~~G~~~a~~~ 185 (461)
T TIGR01860 111 EKQLEKSIHEAFDEFPDIKRMIVYTTCPT---ALIGDDIKAVAKKVQKEL--PDVDIFTVECPGFAGVSQSKGHHVLNIG 185 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCch---hhhcCCHHHHHHHHHHhc--CCCcEEEEeCCCcCCcccchHHHHHHHH
Confidence 8888888877654332 244677775532 122233333333332222 1368999999987431 11 2222
Q ss_pred H-HHHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 183 L-GDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 183 l-~~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+ +++. ..+.|.-||-.++ +..+.++.++.+..|+++.+
T Consensus 186 ~~~~~v~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gi~v~~ 232 (461)
T TIGR01860 186 WINEKVGTLEPEITSEYTINVIGDYNI-QGDTQVLQKYWDKMGIQVIA 232 (461)
T ss_pred HHHHHhcccCCCCCCCCcEEEECCCCC-cccHHHHHHHHHHcCCcEEE
Confidence 1 2211 2467888884444 23455555557777777654
No 168
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=44.69 E-value=2e+02 Score=26.67 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred HHhCCCccceEEeecC--CC----CCcHHHHHHHHHHHHcCcc-ceEeecCC---cHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 156 FRLGLSSVELYQLHWA--GI----WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 156 ~~L~~d~iDl~~lh~p--~~----~~~~~~~~~l~~l~~~G~i-r~iGvs~~---~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
++.| .|++-+|-. |+ .+.+|..+.||++.+.=+| --||=|+. +++.++++.++++-. ++-.-..+
T Consensus 161 k~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclLaSan 235 (403)
T COG2069 161 KKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLLASAN 235 (403)
T ss_pred HHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEeeccc
Confidence 4566 578888853 22 5678999999999988777 46788876 577788887765421 22222222
Q ss_pred CCccccCccccChhhHHHhcCceEEEccccccc
Q 021542 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 226 ~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
.++ . .+ .+.+.+.++|=.+++|+++.-.
T Consensus 236 ldl---D-y~-~ia~AA~ky~H~VLswt~~D~N 263 (403)
T COG2069 236 LDL---D-YE-RIAEAALKYDHVVLSWTQMDVN 263 (403)
T ss_pred ccc---C-HH-HHHHHHHhcCceEEEeeccChH
Confidence 211 1 11 3889999999999999988765
No 169
>PRK13753 dihydropteroate synthase; Provisional
Probab=44.67 E-value=2.5e+02 Score=25.72 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEe-ecCCC--CCcHH----HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~--~~~~~----~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+.+.+.+..++.+ .-|.|-||+--- ..|.. .+.++ +...++.+++.+ ..|.+-++.++.++++++.
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~--~~ISIDT~~~~va~~al~a--- 95 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQM--HRVSIDSFQPETQRYALKR--- 95 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCC--CcEEEECCCHHHHHHHHHc---
Confidence 35565666655544 447888888543 34654 23222 346777788775 3489999999999998754
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccccc-ccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHH
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA-QGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRI 293 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~-~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l 293 (311)
|..+ +| ..+-+. .. .+.+.|.+.+++++.+-..+ .|.- + ......| .........-++.-
T Consensus 96 -Gadi-IN--DVsg~~--d~--~~~~vva~~~~~vVlmH~~~~~~~~---------~-~~~~~~~-~dv~~ev~~~l~~~ 156 (279)
T PRK13753 96 -GVGY-LN--DIQGFP--DP--ALYPDIAEADCRLVVMHSAQRDGIA---------T-RTGHLRP-EDALDEIVRFFEAR 156 (279)
T ss_pred -CCCE-EE--eCCCCC--ch--HHHHHHHHcCCCEEEEecCCCCCCC---------C-cccCCCc-chHHHHHHHHHHHH
Confidence 3322 12 222221 11 47888999999998876544 1210 0 0000112 11223333344445
Q ss_pred HHHHHhcCCChhHhhh
Q 021542 294 KELGENYSKTSTQAST 309 (311)
Q Consensus 294 ~~iA~~~g~s~~q~al 309 (311)
.+.|.+.|+...++.|
T Consensus 157 i~~~~~~Gi~~~~Iil 172 (279)
T PRK13753 157 VSALRRSGVAADRLIL 172 (279)
T ss_pred HHHHHHcCCChhhEEE
Confidence 5667777887777654
No 170
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=44.66 E-value=3e+02 Score=27.14 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHHHHHHHhccCCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------cHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R-~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~ 182 (311)
|+-|-++|++.....+. +-++|.|-+... .=.+.+..-+++.-+++ -++++.+|-|.+.. ...+.++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~~---lIGDDi~av~~~~~~~~---~~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPVG---LIGDDIEAVAKKASKEL---GKPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChHH---HhccCHHHHHHHHhhhc---CCcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 77788888775544323 557777776431 11222333333333333 36899999988743 1222333
Q ss_pred HHH-HHH----------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 183 LGD-AVE----------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 183 l~~-l~~----------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+.+ +.. .++|.-||-.|+. ..+.++.++++..|+++.+
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~-gd~~eik~lL~~~Gi~v~~ 238 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIG-GDAWESRILLEEIGLRVVA 238 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 332 221 3678888865542 3344444446667766543
No 171
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.53 E-value=1.7e+02 Score=23.66 Aligned_cols=113 Identities=13% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al-~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
+-...++..++ ++|+..+|+...-.. |+++..+.+..+ +=+-+|+-.+ .+... .+.+-+
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~---------e~~v~aa~~~~a-----diVglS~l~~-----~~~~~-~~~~~~ 74 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQ---------EEFIKAAIETKA-----DAILVSSLYG-----HGEID-CKGLRQ 74 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----cCHHH-HHHHHH
Confidence 56667888887 569999998765554 888888877643 4445566553 23333 344566
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~ 209 (311)
.|++-|.+.+ .+++=..-..+.++.-+.-++|++.|--+-+|=+. +++++...+
T Consensus 75 ~l~~~gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt-~~~~iv~~l 128 (134)
T TIGR01501 75 KCDEAGLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT-PPEVVIADL 128 (134)
T ss_pred HHHHCCCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC-CHHHHHHHH
Confidence 6777776533 23333321233344444446678888434444333 555554443
No 172
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.52 E-value=1.3e+02 Score=26.64 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=50.6
Q ss_pred EeecCCcHH--HHHHHHHHHHhcCCCeeEeeecCCc---cccC---ccccChhhHHHhcCceEEEcccccccccCCCCCC
Q 021542 195 VGVSNYSEK--RLRNAYEKLKKRGIPLASNQVNYSL---IYRK---PEENGVKAACDELGITLIAYCPIAQGALTGKYTP 266 (311)
Q Consensus 195 iGvs~~~~~--~~~~~~~~~~~~~~~~~~~q~~~n~---~~~~---~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~ 266 (311)
||+|++... .+.+.++.+++.|+ +.+++..+. +... ....++.+.++++||.+.++.+...+.-. ++.
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~--~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~-~~~- 78 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGY--DGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPY-NMM- 78 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCC--CEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCc-ccc-
Confidence 566665433 36666666666553 444432110 1111 01124788999999999988875543200 000
Q ss_pred CCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 267 QNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.-.+.......+.+....++|++.|...
T Consensus 79 ----------~~~~~~r~~~~~~~~~~i~~a~~lGa~~ 106 (275)
T PRK09856 79 ----------LGDEHMRRESLDMIKLAMDMAKEMNAGY 106 (275)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 0012223344555667778888887643
No 173
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=44.30 E-value=64 Score=31.90 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHH
Q 021542 111 TLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (311)
Q Consensus 111 ~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~ 188 (311)
+-+|.+|+.+ .+++|+..+.. .+.....+..-+.+.+++-++. ---+.|.--+. .+.......+..+++
T Consensus 342 ~dlG~~L~~~------~~l~VsINl~a--~Dl~s~rli~~~~~~l~~~~v~-pqQI~lElTER~f~D~~~~~~iI~r~Re 412 (524)
T COG4943 342 RDLGDLLRQH------RDLHVSINLSA--SDLASPRLIDRLNRKLAQYQVR-PQQIALELTERTFADPKKMTPIILRLRE 412 (524)
T ss_pred HHhHHHHHhC------cceEEEEeeee--hhhcCchHHHHHHHHHHhcCcC-hHHheeehhhhhhcCchhhhHHHHHHHh
Confidence 4467777765 47888888765 4455556677777777776653 33333333222 455666777777777
Q ss_pred cCc
Q 021542 189 QGL 191 (311)
Q Consensus 189 ~G~ 191 (311)
.|.
T Consensus 413 aG~ 415 (524)
T COG4943 413 AGH 415 (524)
T ss_pred cCC
Confidence 774
No 174
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=44.21 E-value=1.2e+02 Score=29.74 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCCC-----cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L-~~d~iDl~~lh~p~~~~-----~~~~~~~l 183 (311)
|+-|-++|++.....+.+=++|.|=+-.. .-.+.+...+++.-++. ...-+.++.++-|++.. .+.++++|
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~~e---iIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al 153 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGLTE---TRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAI 153 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcchHh---hhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 77888888765432223456666555321 11222222222222221 11136789999998732 22333333
Q ss_pred HH-HH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 184 GD-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~-l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
-+ +. +.++|.-||-+++.+..+.++.++.+..|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 154 VEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred HHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 22 22 345688888666655666777776777777653
No 175
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.11 E-value=2.5e+02 Score=25.48 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCC--CchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGA--INSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~--~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
.++..+..+.+.+.|+..||.--...+....+. ..+.+.+-+.++..... -++-|..|+... . +.+. .+
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl~~~---~--~~~~-~~ 171 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKLTPN---V--TDIV-EI 171 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEeCCC---c--hhHH-HH
Confidence 467777888888889999986211111000000 12366666666665421 267788898531 1 1222 33
Q ss_pred HHHHHHhCCCccceEE------eecCCCC--------------CcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHH
Q 021542 152 KDSLFRLGLSSVELYQ------LHWAGIW--------------GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~------lh~p~~~--------------~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~ 210 (311)
-+.+...|.|.|+++- +|..... ...-.++.+.++++.=.|.-||..+. +++.+.+++.
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~ 251 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLM 251 (296)
T ss_pred HHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 3456678887776631 1211000 01235677788887666889999886 7888888865
Q ss_pred HHHhcCCCeeEeeecCCccc----cCccccChhhHHHhcCc
Q 021542 211 KLKKRGIPLASNQVNYSLIY----RKPEENGVKAACDELGI 247 (311)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~~~----~~~~~~~ll~~~~~~gi 247 (311)
. ..+.+|+-=-++. ......++.++.+++|.
T Consensus 252 ~------GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 252 A------GASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred c------CCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 3 2455654433332 11122246666666664
No 176
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=43.83 E-value=98 Score=24.39 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. ....+..+++.+.+.++.+.. ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 667788888653 357788899999999987643 3589999998865 5677888888877765
No 177
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=43.83 E-value=2.6e+02 Score=25.67 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCc-c-ceEeecCCcH------------HHH
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYSE------------KRL 205 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~-i-r~iGvs~~~~------------~~~ 205 (311)
.....+.+++-++..++ + .+-+.+-.--.|+. -.++.++.|.++++.|. + -.+|+=+++. +.+
T Consensus 89 t~l~~~~L~~l~~~i~~-~-~~~~~isi~trpd~-l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~ 165 (302)
T TIGR01212 89 TYAPVEVLKEMYEQALS-Y-DDVVGLSVGTRPDC-VPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACY 165 (302)
T ss_pred CCCCHHHHHHHHHHHhC-C-CCEEEEEEEecCCc-CCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHH
Confidence 33566777776666654 2 11122211123443 35667888888888887 5 4678776654 345
Q ss_pred HHHHHHHHhcCCCeeEeeecCCccccCc-cccChhhHHHhcCce
Q 021542 206 RNAYEKLKKRGIPLASNQVNYSLIYRKP-EENGVKAACDELGIT 248 (311)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~~~~ll~~~~~~gi~ 248 (311)
.++++.+++.++.+.+ .+.+.+=.... .-.+.++++.+.++.
T Consensus 166 ~~ai~~l~~~gi~v~~-~lI~GlPget~e~~~~t~~~l~~l~~d 208 (302)
T TIGR01212 166 VDAVKRARKRGIKVCS-HVILGLPGEDREEMMETAKIVSLLDVD 208 (302)
T ss_pred HHHHHHHHHcCCEEEE-eEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 5555556666654332 33333322111 111356666666544
No 178
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=43.67 E-value=2.6e+02 Score=25.51 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHH---hCCCccceEEeecCC--CCCcHHHHHHHHHHHHcCccceEeecCC----cHHHHHHHHHHHH
Q 021542 143 GRQSVLAALKDSLFR---LGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLK 213 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~---L~~d~iDl~~lh~p~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~----~~~~~~~~~~~~~ 213 (311)
+++++...+.+..+. .|. ++.+...+... ..+.+.+.+..+++.+.| +..|.++.- .|+++.++++..+
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 445554444444443 343 46666665332 246677788888888887 677887763 6888888877654
Q ss_pred hcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCC
Q 021542 214 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~ 262 (311)
+. .+ . +.+.+|.=+...-.-.-.-.+-+.|+..+--+..+.|--+|
T Consensus 187 ~~-~~-~-~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aG 232 (280)
T cd07945 187 KR-YP-N-LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAG 232 (280)
T ss_pred hh-CC-C-CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 32 11 1 11222221111000012334567788887766666664443
No 179
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=43.64 E-value=2.1e+02 Score=24.42 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred ccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 162 ~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
.+|.+|||..+. .+..+.+.+......++.||+++.....+
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478999998752 23344443333346788999998865443
No 180
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=43.62 E-value=2.2e+02 Score=24.82 Aligned_cols=73 Identities=18% Similarity=0.336 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCC-CCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~-g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
++.....+.+.++|..|+=|+..|+. |.+ ...-+.+-+.+++ + +-.|... .-.+.+....-++.
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf~~~gat---~~dv~~m~~~v~~--------~--v~IKaaG--Girt~~~a~~~i~a 196 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGFGAGGAT---VEDVRLMRNTVGD--------T--IGVKASG--GVRTAEDAIAMIEA 196 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCCC---HHHHHHHHHHhcc--------C--CeEEEeC--CCCCHHHHHHHHHH
Confidence 66778999999999999999988873 322 0112334444432 1 2334332 22578889999999
Q ss_pred HHHHhCCCc
Q 021542 154 SLFRLGLSS 162 (311)
Q Consensus 154 sL~~L~~d~ 162 (311)
--.|+|++.
T Consensus 197 Ga~riGts~ 205 (211)
T TIGR00126 197 GASRIGASA 205 (211)
T ss_pred hhHHhCcch
Confidence 899999875
No 181
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.40 E-value=1.1e+02 Score=27.30 Aligned_cols=98 Identities=11% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHH-HHcCccceEeecCC-----cHHHHHHHHHHHHhcCCCeeE
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA-VEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l-~~~G~ir~iGvs~~-----~~~~~~~~~~~~~~~~~~~~~ 221 (311)
..+++.|+-.| +|||++=+-|-.. .-++++++..-++ ++-|.--+.| .++ ....+++.++.|+..| |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 56667777777 6888888877544 2233344443333 3334334444 111 1133444444444332 444
Q ss_pred eeecCCccccCccc-cChhhHHHhcCceEE
Q 021542 222 NQVNYSLIYRKPEE-NGVKAACDELGITLI 250 (311)
Q Consensus 222 ~q~~~n~~~~~~~~-~~ll~~~~~~gi~v~ 250 (311)
+.+.-..+.-..+. ..+++.++++|..++
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 44443333322211 135555555555544
No 182
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=43.34 E-value=35 Score=28.66 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHcC-ccceEeecCCc--HHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 176 NEGFIDGLGDAVEQG-LVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G-~ir~iGvs~~~--~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
..+++++|.++++.| +|..+|..|.. ...+.+++ ...+.+..|+-.+ +-...+..+++.|+.++.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--------~~~i~~~~~~~~~---e~~~~i~~~~~~G~~viV 130 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--------GVDIKIYPYDSEE---EIEAAIKQAKAEGVDVIV 130 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--------T-EEEEEEESSHH---HHHHHHHHHHHTT--EEE
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--------CCceEEEEECCHH---HHHHHHHHHHHcCCcEEE
Confidence 457788888877665 45555555553 34444442 2344444443222 112477778888888877
No 183
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=43.30 E-value=5.2e+02 Score=29.01 Aligned_cols=123 Identities=7% Similarity=0.013 Sum_probs=72.9
Q ss_pred HhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcC-cc--ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 157 RLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG-LV--KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 157 ~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G-~i--r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
+-|.+.||+- ++. .+.++.+..+..+...- .+ --|-+-+++++.++.+++.++ .++.+|-+. ....
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~---G~~IINSIs--~~~~ 465 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ---GKGIVNSIS--LKEG 465 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC---CCCEEEeCC--CCCC
Confidence 3588999985 333 34445554444444321 11 347888899999999977632 345555443 3321
Q ss_pred CccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHH-hcCCChhHhh
Q 021542 232 KPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGE-NYSKTSTQAS 308 (311)
Q Consensus 232 ~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~-~~g~s~~q~a 308 (311)
...-.++++.|+++|..++++.--..|. +...++-.+.++++-+++. ++|+++..+.
T Consensus 466 ~~~~~~~~~l~~kyga~vV~m~~de~G~--------------------~~t~e~r~~ia~r~~~~~~~~~Gi~~~dIi 523 (1229)
T PRK09490 466 EEKFIEHARLVRRYGAAVVVMAFDEQGQ--------------------ADTRERKIEICKRAYDILTEEVGFPPEDII 523 (1229)
T ss_pred CccHHHHHHHHHHhCCCEEEEecCCCCC--------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 1111148999999999999986544442 1112333444556666665 5999988764
No 184
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.20 E-value=43 Score=32.72 Aligned_cols=105 Identities=11% Similarity=-0.028 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH----------HHHHHHHHHHHhCCCccceEEeecCCCCCcHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS----------VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGF 179 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~----------i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~ 179 (311)
|.++.-+-+.+.-.- +.+++|++-++.+.... +-. +.-.-...-+||.+.|+|.. ....+|.
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQ-plA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeA 222 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQ-PLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEA 222 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccc-hHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHH
Confidence 444444333332222 57889998887642111 000 00111223357788899832 1568899
Q ss_pred HHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe--eecC
Q 021542 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNY 226 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~--q~~~ 226 (311)
+...++..++|+-.+||+-.--.+.+.++++. +++|+++ |...
T Consensus 223 l~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~vtDQTsa 267 (561)
T COG2987 223 LALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLVTDQTSA 267 (561)
T ss_pred HHHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCceecccccc
Confidence 99999999999999999999887877777553 5666664 5443
No 185
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=42.91 E-value=1.1e+02 Score=24.60 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----CccceEEeecCCC--CCcHHHHHHHHHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~----d~iDl~~lh~p~~--~~~~~~~~~l~~l~~ 188 (311)
|=-+.|+-|++ ....+..+++.|.++++.+.. ...|++++..+.. .+..++-+.|+.+.+
T Consensus 48 RvG~~VSKKvG---~AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNG---NAVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccC---cchHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 67888888986 357888899999999987754 4589999998865 456667777766655
No 186
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=42.22 E-value=1.4e+02 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccC
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYG 99 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg 99 (311)
++++..++.+.+++.|..|+=|+..|+
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~ 160 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFS 160 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 346677888888888888888888875
No 187
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.06 E-value=2.4e+02 Score=24.77 Aligned_cols=26 Identities=4% Similarity=-0.008 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcc
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEV 97 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~ 97 (311)
.+.++..++++...+.|+..|+....
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~ 41 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSG 41 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 35699999999999999999997543
No 188
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.06 E-value=1.4e+02 Score=28.36 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=60.7
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHHcCc----cceEee--cCCcHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGV--SNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~~G~----ir~iGv--s~~~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+-||.++. .+.++++++++++.+.+. |+++=+ -|.+.++++++.+.++.. +..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l--~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGI--KCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcC--CCcEEEEecC
Confidence 66787764 235889999998877542 344444 455678888888877543 4667888999
Q ss_pred ccccCccc----c---ChhhHHHhcCceEEEcccccc
Q 021542 228 LIYRKPEE----N---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~~~~----~---~ll~~~~~~gi~v~a~s~l~~ 257 (311)
++...... . .+.+.++++|+.+......+.
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 87643211 1 356668899999987766543
No 189
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=42.03 E-value=3.2e+02 Score=27.08 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 021542 142 LGRQSVLAALKDSLFRLGLSS 162 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~ 162 (311)
.+++.|.+.++...++.|+.+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~ 242 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF 242 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE
Confidence 467888888888777777554
No 190
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=42.00 E-value=1e+02 Score=23.59 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHHh---CCCccce------EEeec--CC--CCCcHHHHHHHHHHHHc---CccceEeecCC
Q 021542 141 RLGRQSVLAALKDSLFRL---GLSSVEL------YQLHW--AG--IWGNEGFIDGLGDAVEQ---GLVKAVGVSNY 200 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L---~~d~iDl------~~lh~--p~--~~~~~~~~~~l~~l~~~---G~ir~iGvs~~ 200 (311)
+.+.+.|.++|+..|..- +++|-|- ++--| |. ..+..+++.++++++++ ..||-||+.+.
T Consensus 11 ~lt~~~i~~QI~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~~ 86 (99)
T cd03527 11 PLTDEQIAKQIDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFDNY 86 (99)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 477889999999999873 4444442 22211 22 24577999999999877 66899999886
No 191
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.98 E-value=3.1e+02 Score=25.96 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=60.2
Q ss_pred Cccce-EEeecCCC------------CCcHHHHHHHHHHH-HcCc---cceEeecCC--cHHHHHHHHHHHHhcCCCeeE
Q 021542 161 SSVEL-YQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 161 d~iDl-~~lh~p~~------------~~~~~~~~~l~~l~-~~G~---ir~iGvs~~--~~~~~~~~~~~~~~~~~~~~~ 221 (311)
.++|+ +-||.++. .+.+++.+++.+.. +.|+ |+++=+.++ +.+.++++.+.++.......+
T Consensus 207 ~~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~V 286 (348)
T PRK14467 207 PEVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKV 286 (348)
T ss_pred cCeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEE
Confidence 34555 56787765 12355666666554 3343 456656554 578888888776643223567
Q ss_pred eeecCCccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 222 NQVNYSLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 222 ~q~~~n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
+-++||++....... .+.+..+++|+.+......+.
T Consensus 287 nLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 329 (348)
T PRK14467 287 NLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGV 329 (348)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 889999876432211 355667778999988876654
No 192
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=41.93 E-value=2.7e+02 Score=25.89 Aligned_cols=88 Identities=18% Similarity=0.112 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
-+..+.+..+++.|-.+|=++.++|+ -++.+.+|..+. ..+...- .......+...+.+.
T Consensus 109 v~g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~y------rp~~np~ld~~i~~~ 168 (308)
T COG1560 109 VEGLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMY------RPPKNPLLDWLITRG 168 (308)
T ss_pred ecCHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEe------cCCCCHHHHHHHHHH
Confidence 45567788888888888888888888 888888887764 2222222 225566788889999
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCcc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~i 192 (311)
.++.|...++ ...+-++.|-+..++|.+
T Consensus 169 R~r~~~~~~~----------~~~~~ir~li~~Lk~G~~ 196 (308)
T COG1560 169 RERFGGRLLP----------RKGEGIRQLIKALKQGEA 196 (308)
T ss_pred HHhcCCcccC----------CCchhHHHHHHHHhcCCe
Confidence 9999887665 222445555555566633
No 193
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=41.72 E-value=3.8e+02 Score=26.88 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC------cHHHHHH
Q 021542 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~-R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~------~~~~~~~ 182 (311)
|+-|-++|++.....+ .+-++|.|-+.. ..-.|.|..-+++.-++.. -++++.+|-|++.. ...+.++
T Consensus 112 e~kL~~~I~ea~~~~~~p~~I~V~tTC~t---~lIGDDi~av~k~~~~~~~--~~pVi~v~tpGF~G~~~~gg~~~a~~a 186 (513)
T TIGR01861 112 EKLLKQNIIEAFKAFPHIKRMTIYQTCAT---ALIGDDIAAIAKEVMEEMP--DVDIFVCNSPGFAGPSQSGGHHKINIA 186 (513)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEccCch---hhccCCHHHHHHHHHHhcC--CCcEEEEeCCCccCccccchHHHHHHH
Confidence 7755555544332221 356888887753 2334455555555444431 27899999998833 2222323
Q ss_pred -HHHHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 183 -LGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 183 -l~~l~~--------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+++++. .++|.-||-.|.. ..+.++..+++..|+++.+
T Consensus 187 li~~~v~~~~~~~~~~~~VNliG~~n~~-gD~~eik~lLe~~Gl~v~~ 233 (513)
T TIGR01861 187 WINQKVGTVEPEIKGKHVINYVGEYNIQ-GDQEVMVDYFQRMGIQVLS 233 (513)
T ss_pred HHHHhhcccCcccCCCCeEEEeCCCCCc-cCHHHHHHHHHHCCCeEEE
Confidence 233331 2568888866652 2334444446667776654
No 194
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=41.68 E-value=1.1e+02 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=21.7
Q ss_pred eecCCccccCcccc---ChhhHHHhcCceEEEccccc
Q 021542 223 QVNYSLIYRKPEEN---GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 223 q~~~n~~~~~~~~~---~ll~~~~~~gi~v~a~s~l~ 256 (311)
...||..+....++ ++.+.|+++||.+-.|-...
T Consensus 125 ~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~ 161 (346)
T PF01120_consen 125 YTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW 161 (346)
T ss_dssp T-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS
T ss_pred CCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch
Confidence 45566665433332 68999999999997766554
No 195
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=41.54 E-value=1.7e+02 Score=24.38 Aligned_cols=108 Identities=17% Similarity=0.079 Sum_probs=57.1
Q ss_pred HHHHHHHHcC-ccceEeecCCcHHHHH---HHHHHHHhc-CCCeeEeeecCCccccCc------cc------cChhhHHH
Q 021542 181 DGLGDAVEQG-LVKAVGVSNYSEKRLR---NAYEKLKKR-GIPLASNQVNYSLIYRKP------EE------NGVKAACD 243 (311)
Q Consensus 181 ~~l~~l~~~G-~ir~iGvs~~~~~~~~---~~~~~~~~~-~~~~~~~q~~~n~~~~~~------~~------~~ll~~~~ 243 (311)
..|.+...++ .|...|+++.+..++. .+-...... .....++++..|=..... .+ ..+++.++
T Consensus 25 ~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~ 104 (198)
T cd01821 25 QALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEAR 104 (198)
T ss_pred HHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3344433333 5677888888766543 222222221 224555666655544431 00 15788899
Q ss_pred hcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 244 ELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 244 ~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
++|+.++..+|....-+. . . . .......+..+.++++|+++|+..
T Consensus 105 ~~~~~~il~tp~~~~~~~----~-----~---~----~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 105 AKGATPILVTPVTRRTFD----E-----G---G----KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HCCCeEEEECCccccccC----C-----C---C----cccccchhHHHHHHHHHHHhCCCE
Confidence 999999888775421110 0 0 0 011122333457889999998754
No 196
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=41.44 E-value=1.7e+02 Score=27.78 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=59.3
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHH-cCc---cceEeecCC--cHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~-~G~---ir~iGvs~~--~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+.||.++. .+.+++++++.++.+ .|+ |+++=+.++ +.+++.++.+.++. +++.++-++||
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn 296 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPWN 296 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEecc
Confidence 77898874 235788888876654 442 355555444 56888888777664 34677888999
Q ss_pred ccccCccc----c---ChhhHHHhcCceEEEcccccc
Q 021542 228 LIYRKPEE----N---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~~~~----~---~ll~~~~~~gi~v~a~s~l~~ 257 (311)
++...... . .+.++.+++|+.+......+.
T Consensus 297 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 297 PFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 87643221 1 245667778999988776654
No 197
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=41.35 E-value=1.1e+02 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=46.1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. ...+..+++.+.+.++.... ...|++++-.+.. .+..++-+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 678888888863 57788899999998887643 3579999998865 4566777777777655
No 198
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.25 E-value=75 Score=31.58 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=53.3
Q ss_pred CCcEEEEecCCCCCC----------------CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPW----------------RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~----------------~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~ 189 (311)
+.++||++-+|.+.. ..+++.+ -+|+.+.|+|.+. .+.+++++..++.+++
T Consensus 156 ~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri-------~kR~~~g~ld~~~------~~ldea~~~~~ea~~~ 222 (546)
T PF01175_consen 156 AGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRI-------EKRLEQGYLDEVT------DDLDEALARAKEARAK 222 (546)
T ss_dssp TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHH-------HHHHHTTSSSEEE------SSHHHHHHHHHHHHHT
T ss_pred cceEEEEecccccccchHHHHHhcCceEEEEEECHHHH-------HHHHhCCCeeEEc------CCHHHHHHHHHHhhcc
Confidence 689999999986421 1344434 4577788999653 4688999999999999
Q ss_pred CccceEeecCCcHHHHHHHHHHHHhcCCCeeE--eeecC
Q 021542 190 GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNY 226 (311)
Q Consensus 190 G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~--~q~~~ 226 (311)
|+..+||+-.--.+.+.++++. ++.|++ .|...
T Consensus 223 ~~~~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 223 KEPLSIGLLGNAADLWEELVER----GIIPDLVTDQTSA 257 (546)
T ss_dssp T--EEEEEES-HHHHHHHHHHT----T---SEE---SST
T ss_pred CCeeEEEEeccHHHHHHHHHHc----CCCCCcccCCCcc
Confidence 9999999999877877777543 555544 56665
No 199
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=41.02 E-value=2.3e+02 Score=26.29 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecC-CCCCCCCCHHHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF-AALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~-~~~~~~~~~~~i~~~l~~sL~ 156 (311)
.++...|...|+.++-++..+-.... .+.|.++++- +.--||..+. ....|.++++ +.++....
T Consensus 165 kd~~~Ia~a~g~~YVA~~~~~~~~~l------~~~i~~A~~~------~Gps~I~v~sPC~~~~~~~~~---~~~~~~kl 229 (299)
T PRK11865 165 KNMPLIMAAHGIPYVATASIGYPEDF------MEKVKKAKEV------EGPAYIQVLQPCPTGWGFPPE---KTIEIGRL 229 (299)
T ss_pred CCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhC------CCCEEEEEECCCCCCCCCCHH---HHHHHHHH
Confidence 45666777789999998877633211 4444444432 2334444443 2333555554 44444444
Q ss_pred HhCCCccceEEeecCCC---CCcHH-----HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHH
Q 021542 157 RLGLSSVELYQLHWAGI---WGNEG-----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 157 ~L~~d~iDl~~lh~p~~---~~~~~-----~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~ 212 (311)
...+.|.-||-+..-.. ..... -..--+-|+.+|+.+++ ++++++++-+..
T Consensus 230 Avetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v 288 (299)
T PRK11865 230 AVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYI 288 (299)
T ss_pred HHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHH
Confidence 55577888877764221 00000 11223457789999988 667777765553
No 200
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.93 E-value=1.4e+02 Score=28.01 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceE
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELY 166 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~ 166 (311)
.++.+.+..-+ +.|.+.|+++|.+-
T Consensus 21 ~f~~~~~~~i~-~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIA-RALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHH-HHHHHcCCCEEEee
Confidence 34555444333 34677777777765
No 201
>PRK00077 eno enolase; Provisional
Probab=40.93 E-value=1.4e+02 Score=29.07 Aligned_cols=96 Identities=17% Similarity=0.085 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC--ccceEeecC--CcHHHHHHHHHHHHhcCCC
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN--YSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~~~~~~~~~~~~~~~ 218 (311)
+++.....+.+.++. .++++|..|-.... |+.+.+|.++- ++.-+|=-. .+++.+.++++. --
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~D---~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLDEND---WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCCCcc---HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 455555555544444 56778888754333 55556666653 455444332 368888888664 24
Q ss_pred eeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
.+++|+..|-+-.--+..++..+|+.+|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 667777766544322223588999999998664
No 202
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=40.76 E-value=2.4e+02 Score=24.45 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHh---CCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 144 RQSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L---~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
...+...+++.++++ |. .++++..... .+.....+.++.+..+ ++..|=+...+...+...+..++..++|+.
T Consensus 14 ~~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv 89 (272)
T cd06300 14 RAQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPASPTALNPVIEEACEAGIPVV 89 (272)
T ss_pred HHHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCCChhhhHHHHHHHHHCCCeEE
Confidence 345666666666666 52 1355544332 2334455666666665 455555544433333333333444445433
No 203
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=40.68 E-value=1.4e+02 Score=29.31 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCccceEE---eecCCCCCcHHHHHHHHHHHHcC-ccc---------eEeecCCcHHHHHHHHHHHHhcCC
Q 021542 151 LKDSLFRLGLSSVELYQ---LHWAGIWGNEGFIDGLGDAVEQG-LVK---------AVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~---lh~p~~~~~~~~~~~l~~l~~~G-~ir---------~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
+-+.|.++|.+.|++.- ++.--+.-.++-|+.++.+++.. .++ .+|.++++.+.+.+.++.+...|+
T Consensus 31 ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 31 ILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGI 110 (448)
T ss_pred HHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCC
Confidence 44446677777777730 00000111223455565555541 222 245556655555655555555554
Q ss_pred CeeEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
...-+=...|-.. +.. +.+++++++|+.+.
T Consensus 111 d~irif~~lnd~~-n~~--~~v~~ak~~G~~v~ 140 (448)
T PRK12331 111 DIIRIFDALNDVR-NLE--TAVKATKKAGGHAQ 140 (448)
T ss_pred CEEEEEEecCcHH-HHH--HHHHHHHHcCCeEE
Confidence 3222222222222 111 36777777776554
No 204
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=40.55 E-value=2.8e+02 Score=24.99 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEECC
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dta 95 (311)
..+|.+...+.+++.++.|++-+-..
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~ 41 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVC 41 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 46788999999999999999877543
No 205
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=40.40 E-value=2.5e+02 Score=24.46 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+.++..-+.||+.+. ++-+.+......+...++|.+++++| +..|-.... +..+-...-..+...++++..
T Consensus 46 ~~~~~~A~~lgip~~-~i~~~~~~~~~~~~l~~~l~~~~~~g-~~~vv~G~i~sd~~~~~~e~v~~~~gl~~~~------ 117 (218)
T TIGR03679 46 ELTRLQAEALGIPLV-KIETSGEKEKEVEDLKGALKELKREG-VEGIVTGAIASRYQKSRIERICEELGLKVFA------ 117 (218)
T ss_pred HHHHHHHHHhCCCEE-EEECCCCChHHHHHHHHHHHHHHHcC-CCEEEECCcccHhHHHHHHHHHHhCCCeEEe------
Confidence 344555677887532 22232211223455778888888885 665554433 333333333445555544322
Q ss_pred ccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 228 LIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 228 ~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
|+-..... ++++.+.+.|+..+.-+.-+.|+ ...+.. +.+. .+.++.|.++.+++|+.|
T Consensus 118 PLw~~~~~-el~~~~~~~G~~~~i~~v~~~~l-~~~~lG---------~~~~-------~~~~~~l~~l~~~~~~~~ 176 (218)
T TIGR03679 118 PLWGRDQE-EYLRELVERGFRFIIVSVSAYGL-DESWLG---------REID-------EKYIEKLKALNKRYGINP 176 (218)
T ss_pred ehhcCCHH-HHHHHHHHCCCEEEEEEEecCCC-ChHHCC---------CccC-------HHHHHHHHHHHhhcCccc
Confidence 33322222 59999999999887766655552 211111 1121 234457888888888765
No 206
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=40.26 E-value=2.8e+02 Score=24.93 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCC--------CCHHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR--------LGRQSVLAA 150 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~--------~~~~~i~~~ 150 (311)
+.++.|++.|...|.....-.. ++++ ..++++. -.+++...-+. +.. ...+.+...
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~-p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGT-PRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCC-CcccccCCCcccHHHHHHHH
Confidence 4577788888888864433221 3333 4455554 45666543332 111 112334444
Q ss_pred HHHH---HHHhCCCccceEEeecCCC----CCcHHHHHHHHHHHHcCccceEeecCCc
Q 021542 151 LKDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 151 l~~s---L~~L~~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
+++. +++.|++.-|+++=-...+ ...-++++.++++++.|.=-.+|+||-+
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 4444 4556776445443211122 1234677888888888866789999864
No 207
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=40.18 E-value=2.9e+02 Score=25.07 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=52.3
Q ss_pred HHHHHHCCCCeEEC-CcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC--CCCCCH---HHHHHHHHHH
Q 021542 81 FDTSLDNGITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL--PWRLGR---QSVLAALKDS 154 (311)
Q Consensus 81 l~~Al~~Gin~~Dt-a~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~--~~~~~~---~~i~~~l~~s 154 (311)
....+....|.+.. +.+|... +++.+-+|.+..+ +++..+.|+... .+.... ..+.+.+.+.
T Consensus 29 ~L~~y~~~f~~VEiN~TFYa~p-------~~~t~~~W~~~~p-----~~FrFsvK~~~~iTH~~~l~~~~~~~~~~~~~~ 96 (263)
T COG1801 29 FLAYYASHFNTVEINSTFYAPP-------SPETVLRWAEETP-----DDFRFSVKAPRAITHQRRLKECDFELWEFFLEP 96 (263)
T ss_pred HHHHHhccCCEEEECCcccCCC-------CHHHHHHHHHhCC-----CCeEEEEEecccccchhhhccchHHHHHHHHHH
Confidence 34455666777763 2345442 3888999998776 899999999652 111222 3455555555
Q ss_pred HHHhCCCccceEEeecCCC
Q 021542 155 LFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~ 173 (311)
++.|+ +++..+++.-|-.
T Consensus 97 ~~~L~-~klg~il~Q~Pps 114 (263)
T COG1801 97 LAPLG-ERLGPILFQLPPS 114 (263)
T ss_pred HHhhh-cccceEEEecCCc
Confidence 66777 4899999998865
No 208
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=40.17 E-value=8.3 Score=36.60 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=34.1
Q ss_pred cCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCce
Q 021542 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (311)
Q Consensus 189 ~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~ 248 (311)
-|+||++||--++.+++.++.+.-++ -+..+.+..++... .+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e----~dly~~Q~~ifLDP-~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE----KDLYERQLDVFLDP-HDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH----HHHHHHHHhhhcCC-CCHHHHHHHHHcCCc
Confidence 49999999999999999998664221 12222222222221 122477777777775
No 209
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.17 E-value=1.2e+02 Score=25.75 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=41.9
Q ss_pred HCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCC------CCCHHHHHHHHHHHHHHh-
Q 021542 86 DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW------RLGRQSVLAALKDSLFRL- 158 (311)
Q Consensus 86 ~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~------~~~~~~i~~~l~~sL~~L- 158 (311)
+.-+-.+|...+.....- ++.+-.+++..+..-|..-+++++.+..... .......++.+++..+.|
T Consensus 59 ~a~~~~ld~~~N~~~~~~------~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 59 DADLIVLDCGPNMSPEEF------RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp --SEEEEEESHHCCTTTH------HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCCHHHH------HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 555666676666433222 4555556655443334678888887765322 234567777788887777
Q ss_pred CCCccceEEeecCC
Q 021542 159 GLSSVELYQLHWAG 172 (311)
Q Consensus 159 ~~d~iDl~~lh~p~ 172 (311)
.-..-+|++++..+
T Consensus 133 ~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 133 KEGDKNLYYLDGEE 146 (178)
T ss_dssp HTT-TTEEEE-HHH
T ss_pred HcCCCcEEEeCchh
Confidence 22356888888765
No 210
>PLN00191 enolase
Probab=39.70 E-value=1.3e+02 Score=29.66 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEe-ec-CCcHHHHHHHHHHHHhcCCCee
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iG-vs-~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
+++.+.+-+.+.+ +..++.+|..|-.. +-|+.+.+|.++.++.-+| =+ ..+++.+.++++. --.+
T Consensus 296 s~~e~i~~~~~L~-----~~y~I~~IEDPl~~---~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad 362 (457)
T PLN00191 296 SGDELIDLYKEFV-----SDYPIVSIEDPFDQ---DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACN 362 (457)
T ss_pred CHHHHHHHHHHHh-----hcCCcEEEECCCCc---ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCC
Confidence 4444444444333 33467788877432 3366777777777777666 22 2568888888664 2356
Q ss_pred EeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 221 ~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
++++..|-+-.--+..++.++|+++|+.++.-
T Consensus 363 ~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 363 ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 66666654443223335889999999999763
No 211
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.65 E-value=1.3e+02 Score=25.37 Aligned_cols=85 Identities=26% Similarity=0.326 Sum_probs=55.9
Q ss_pred HHHHhCCCc----cceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcc
Q 021542 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (311)
Q Consensus 154 sL~~L~~d~----iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~ 229 (311)
.|++.|+.- +|==++-|.++...+++.+.+.+++++| ++-+=+||-+..++..+.+. .++++.. -
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~---l~v~fi~-------~ 90 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK---LGVPFIY-------R 90 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh---cCCceee-------c
Confidence 455666432 4445666766677899999999999999 56666999999998888543 2232221 1
Q ss_pred ccCccccChhhHHHhcCceE
Q 021542 230 YRKPEENGVKAACDELGITL 249 (311)
Q Consensus 230 ~~~~~~~~ll~~~~~~gi~v 249 (311)
...+....+-.++++.++..
T Consensus 91 A~KP~~~~fr~Al~~m~l~~ 110 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLPP 110 (175)
T ss_pred ccCccHHHHHHHHHHcCCCh
Confidence 22333335777777777654
No 212
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=39.50 E-value=1.7e+02 Score=24.91 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=70.2
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CCcHHHHHHHHHHHHcCccceEeecCCc--
Q 021542 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS-- 201 (311)
Q Consensus 127 ~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~-- 201 (311)
....+.-.+.. ....-+.....+...|+..+... +-+.+--++. .....+.+.+..|++.| -.+++.+|.
T Consensus 82 ~~~~l~ini~~--~~l~~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G--~~l~ld~~g~~ 156 (240)
T cd01948 82 PDLRLSVNLSA--RQLRDPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALG--VRIALDDFGTG 156 (240)
T ss_pred CCeEEEEECCH--HHhCCcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCC--CeEEEeCCCCc
Confidence 34445555532 22333456677888888888764 2333332222 34556899999999999 457777763
Q ss_pred HHHHHHHHHHHHhcCCCeeEeeecCCccccCcc-------ccChhhHHHhcCceEEEccc
Q 021542 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~ll~~~~~~gi~v~a~s~ 254 (311)
...+..+.. ++|+++-+..+.+..-.. -..++..|+..|+.+++-+.
T Consensus 157 ~~~~~~l~~------~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 157 YSSLSYLKR------LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HhhHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 333434322 467777666655543221 11478899999999998543
No 213
>PRK09061 D-glutamate deacylase; Validated
Probab=39.39 E-value=4e+02 Score=26.51 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
++..++++.|++.|...|=+...|-.+.+ ...+-+.++... +.+..|......... .+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHHH
Confidence 45778889999999999977655644333 555666665554 346677777643110 1222233444444
Q ss_pred HHHhCCCccceEEeecCC--CCCcHHHHHHHHHHHHcCccceEeecCCc
Q 021542 155 LFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
++.....-.-+...|-.. .....+.++.+++++++|.--..-++.|.
T Consensus 238 i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 238 IAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 443322223355556532 23457889999999999854444444443
No 214
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.28 E-value=3.4e+02 Score=25.61 Aligned_cols=128 Identities=10% Similarity=0.026 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|... | |+-.=+..-.+++.. +++.. -.+.|.|-.. ..+.+.+
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPll~~~~~~il~~-~~~~g-----~~~~i~TNG~----ll~~~~~--- 107 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS---G-GEPLLRKDLEELVAH-ARELG-----LYTNLITSGV----GLTEARL--- 107 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE---C-CccCCchhHHHHHHH-HHHcC-----CcEEEECCCc----cCCHHHH---
Confidence 4667889999999999999888642 3 211100111222222 22221 2456777652 2444332
Q ss_pred HHHHHHHhCCCccceEEeecCCC---------C-CcHHHHHHHHHHHHcCcc--ceEeecCCcHHHHHHHHHHHHhcCCC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI---------W-GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~---------~-~~~~~~~~l~~l~~~G~i--r~iGvs~~~~~~~~~~~~~~~~~~~~ 218 (311)
+.|...|.++|- +.|+..+. . ..+.++++++.|++.|.- -..-++..+.+++.++++.+.+.|++
T Consensus 108 --~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 108 --AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred --HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 234555654432 23343321 1 256788999999998842 12335667889999999988888765
No 215
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=39.21 E-value=1.4e+02 Score=23.49 Aligned_cols=62 Identities=10% Similarity=0.045 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC--CccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL--SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~--d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. ....+..+++.+.++++.... .-.|++++..+.. .+..++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 677888888643 347788888999888876532 3579999998865 4566666666666544
No 216
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=38.80 E-value=3.7e+02 Score=26.04 Aligned_cols=86 Identities=12% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~ 219 (311)
.+.+.+.+.+.|++..+ |=+|++-+|-- -..+.++.++++| |..|+.+-...-+...+..
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~-------- 194 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG------VLLEYVERLKRSG--RITGIVSRGGAILAAWMLH-------- 194 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhCC--CccCeecCcHHHHHHHHHH--------
Confidence 45778888888887766 45899999975 3578888999999 5566666654444443222
Q ss_pred eEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 220 ASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
...=||+...-+ .+++.|+++++.+-
T Consensus 195 ---~~~ENPlye~fD--~lLeI~~~yDVtlS 220 (423)
T TIGR00190 195 ---HHKENPLYKNFD--YILEIAKEYDVTLS 220 (423)
T ss_pred ---cCCcCchHHHHH--HHHHHHHHhCeeee
Confidence 123345554433 48888888888763
No 217
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.75 E-value=80 Score=25.48 Aligned_cols=81 Identities=10% Similarity=-0.008 Sum_probs=53.0
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHH
Q 021542 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLR 206 (311)
Q Consensus 127 ~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~ 206 (311)
.++.|.--+.. .+.+.+....-++.+++++++..+|....... ...+++=+...+.++-++=.-|+...|.-++++
T Consensus 34 ~e~LiVrGmsR--ed~d~Dd~~~el~s~ie~~~v~~ld~es~Eg~--elI~e~De~vr~~vei~te~~i~~d~~GfeRlK 109 (156)
T COG4077 34 DEMLIVRGMSR--EDMDADDEEVELYSSIEDYLVKKLDKESFEGV--ELIKEIDEFVRRIVEILTENPIYPDTFGFERLK 109 (156)
T ss_pred cceEEEecccc--cccCcchHHHHHHHHHHHhhHHHhCccCHHHH--HHHHHHHHHHHHHHHhhhcCCCccCcchHHHHH
Confidence 34444433333 45677888899999999999999884322221 112333333455666677778888888888888
Q ss_pred HHHHH
Q 021542 207 NAYEK 211 (311)
Q Consensus 207 ~~~~~ 211 (311)
+-++.
T Consensus 110 eslE~ 114 (156)
T COG4077 110 ESLEM 114 (156)
T ss_pred HHHHH
Confidence 87665
No 218
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.72 E-value=2.4e+02 Score=23.97 Aligned_cols=101 Identities=14% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC---CCcHHHHHHHHHHHHcCccceEeecCCcH--HHHHHHHHHHHhcCCCe
Q 021542 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~~~~~~~~~~~~~~~~~ 219 (311)
..+...+.+.|+..+... +-+.+--.+. .......+.+..|++.| -.+.+.+|.. ..+..+.. .+|
T Consensus 99 ~~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G--~~ialddfg~~~~~~~~l~~------l~~ 169 (241)
T smart00052 99 PDLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELG--VRIALDDFGTGYSSLSYLKR------LPV 169 (241)
T ss_pred chHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCC--CEEEEeCCCCcHHHHHHHHh------CCC
Confidence 445566777777776642 3344433332 23445558999999999 3466776642 33333322 467
Q ss_pred eEeeecCCccccCcc-------ccChhhHHHhcCceEEEccc
Q 021542 220 ASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 220 ~~~q~~~n~~~~~~~-------~~~ll~~~~~~gi~v~a~s~ 254 (311)
+.+-+.-+++..... -..++..|+..|+.+++-+.
T Consensus 170 d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 211 (241)
T smart00052 170 DLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV 211 (241)
T ss_pred CeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 776666555433211 11478899999999998543
No 219
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=38.72 E-value=1.1e+02 Score=30.40 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCC
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~~~~~~~~~~~~~~ 217 (311)
+.|.+.|+.|-...+.++.-|-.|..+..-..-..-+|...| +++.+. |+++.+.+++++++.+|+
T Consensus 198 ~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kG---aYs~~~vYT~eDv~evV~yarlRGI 264 (542)
T KOG2499|consen 198 KVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKG---AYSPRHVYTREDVSEVVEYARLRGI 264 (542)
T ss_pred HHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcC---CCCcceeecHHHHHHHHHHHHhccc
Confidence 556666778888889999999877633221122233455555 222222 355666666665555554
No 220
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=38.69 E-value=1.9e+02 Score=31.30 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=62.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCccceEEeecCCCCC-----cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L-~~d~iDl~~lh~p~~~~-----~~~~~~~l 183 (311)
|+-|-++|++.....+.+=++|.|-+... .-.|.|...+++.-++. ...-+.++.++-|++.. ...++++|
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~e---iIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLTE---TMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchHh---hhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 77777777664322224567777766431 22223333333322221 11237899999998843 22333333
Q ss_pred H-HHH-----HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 184 G-DAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~-~l~-----~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
- ++. ..++|.-||-++..+..+.++.+.++..|+++.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 222 3467888887776677788888878888887654
No 221
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=38.62 E-value=2.5e+02 Score=27.72 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|.+.....+.+=++|.|=+... .-.+.+..-+++.-++++ +.++.++-+++.. ...++++|-
T Consensus 104 ~~kL~~~I~ei~~~~~P~~I~V~tTC~~~---lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 104 EKKLFKAIDEIIEKYAPPAVFVYQTCVVA---LIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGNKNLGNKLAGEALL 177 (475)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCChHH---HhccCHHHHHHHHHHhhC---CCEEEEECCCcccchhhhHHHHHHHHH
Confidence 77888887765433223556676666431 222223333333323343 6888888887632 233344443
Q ss_pred H-HH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 185 D-AV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 ~-l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+ +. +.+.|.-||-.++. ..+.++.+..+..|+++.+
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~-gd~~elk~lL~~~Gl~v~~ 222 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLA-GELWQVKPLLDRLGIRVVA 222 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCC-CCHHHHHHHHHHcCCeEEE
Confidence 2 33 23568888866654 2334444446666766553
No 222
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=38.34 E-value=2.1e+02 Score=23.01 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=60.4
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al-~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
+-...++..++ +.|+..+|....-.. |+++..+.+..+ +=+.||+-.+ .....+ +.+-+
T Consensus 17 ~lG~~iv~~~lr~~G~eVi~LG~~vp~---------e~i~~~a~~~~~-----d~V~lS~~~~-----~~~~~~-~~~~~ 76 (137)
T PRK02261 17 AVGNKILDRALTEAGFEVINLGVMTSQ---------EEFIDAAIETDA-----DAILVSSLYG-----HGEIDC-RGLRE 76 (137)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCccc-----cCHHHH-HHHHH
Confidence 55666777777 559999986544433 666666655443 4455555553 333334 33345
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~ 208 (311)
.|++.+...+- +++=..-..+....-+..++|++.| +..+=-++-+.+++...
T Consensus 77 ~L~~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G-~~~vf~~~~~~~~i~~~ 129 (137)
T PRK02261 77 KCIEAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMG-FDRVFPPGTDPEEAIDD 129 (137)
T ss_pred HHHhcCCCCCe-EEEECCCCCCccChHHHHHHHHHcC-CCEEECcCCCHHHHHHH
Confidence 56666665442 3333322223333334456788889 55444444455554444
No 223
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=38.02 E-value=39 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCChhHhh
Q 021542 289 LLNRIKELGENYSKTSTQAS 308 (311)
Q Consensus 289 ~l~~l~~iA~~~g~s~~q~a 308 (311)
..+.|.++|++.|+|.+++.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 44589999999999998874
No 224
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=37.87 E-value=3.1e+02 Score=26.45 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (311)
.+-=-+|+|-|+--+-||. | ...+--++-..... =+.++-++++ +..+. ..+..+|++
T Consensus 67 lE~RiAaLEGG~aa~a~aS--G----------~AA~~~ai~~la~a--GD~iVss~~L----YGGT~----~lf~~tl~~ 124 (426)
T COG2873 67 LEERIAALEGGVAALAVAS--G----------QAAITYAILNLAGA--GDNIVSSSKL----YGGTY----NLFSHTLKR 124 (426)
T ss_pred HHHHHHHhhcchhhhhhcc--c----------hHHHHHHHHHhccC--CCeeEeeccc----cCchH----HHHHHHHHh
Confidence 3334478899987765542 2 22333344333322 2778888888 44555 466778999
Q ss_pred hCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccC
Q 021542 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (311)
Q Consensus 158 L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (311)
+|++ +-++... +.+++-+++.+=-+.=.+..||=-..+.-.++.+.++|.+++++..|.-..-.++
T Consensus 125 ~Gi~---v~fvd~~---d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy-------- 190 (426)
T COG2873 125 LGIE---VRFVDPD---DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY-------- 190 (426)
T ss_pred cCcE---EEEeCCC---CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce--------
Confidence 9954 4444333 2233322222211222233444444566778888888999998877754443332
Q ss_pred hhhHHHhcCceEEEccc
Q 021542 238 VKAACDELGITLIAYCP 254 (311)
Q Consensus 238 ll~~~~~~gi~v~a~s~ 254 (311)
+=.+-+||-.|+.+|.
T Consensus 191 -l~rP~~hGADIVvHS~ 206 (426)
T COG2873 191 -LCRPIEHGADIVVHSA 206 (426)
T ss_pred -ecchhhcCCCEEEEee
Confidence 2234466777766654
No 225
>PRK07534 methionine synthase I; Validated
Probab=37.85 E-value=3.5e+02 Score=25.41 Aligned_cols=152 Identities=14% Similarity=0.040 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCC----CchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCC------
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGA----INSETLLGRFIK---ERKQRDPEVEVTVATKFAALPW------ 140 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~----~~sE~~lg~aL~---~~~~~~~R~~~~i~tK~~~~~~------ 140 (311)
++...++=+..+++|-++|=|..+..+...-.. +..++++-.+.+ +..... +.+++|+.=+++...
T Consensus 44 Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~-~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 44 PDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKA-GRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhc-CCccEEEEecCCCccccCCCC
Confidence 477777778889999999987665443110000 012333333332 111000 135788888887421
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCc------HHHHHHHHHHHHh
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNAYEKLKK 214 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~------~~~~~~~~~~~~~ 214 (311)
..+.+.+.......++.|--.-+|++++.-. ....|+...++.+++.++--.+.++-.. ...+.++++.++.
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~--p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~ 200 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKAGGADVLWVETI--SAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLVEK 200 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHHHh
Confidence 1456778888888888885456999999853 2456666666666666765555554321 2335555555443
Q ss_pred cCCCeeEeeecCCc
Q 021542 215 RGIPLASNQVNYSL 228 (311)
Q Consensus 215 ~~~~~~~~q~~~n~ 228 (311)
.+..++++-+++..
T Consensus 201 ~~~~~~avGvNC~~ 214 (336)
T PRK07534 201 LGEPPLAFGANCGV 214 (336)
T ss_pred cCCCceEEEecCCC
Confidence 33345676666653
No 226
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=37.85 E-value=1.3e+02 Score=27.80 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=53.5
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.++.++..|-+ .. +.+..|.++-.+ -..|-|-++.+.+..+++. .-.+++|+.....-.-..-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 46666666642 12 566666666433 4666666777777777543 2356666665543321111258999
Q ss_pred HHhcCceEEEcccccccc
Q 021542 242 CDELGITLIAYCPIAQGA 259 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~G~ 259 (311)
|+.+||.++..+.+..|+
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999877666654
No 227
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.85 E-value=1.8e+02 Score=27.35 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHHHHHcCccceEeecCC--cHHHHHHHHHHHHhcCC
Q 021542 183 LGDAVEQGLVKAVGVSNY--SEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 183 l~~l~~~G~ir~iGvs~~--~~~~~~~~~~~~~~~~~ 217 (311)
++.+.+.| |+.|-+..+ ..+.+.+.++.+++.|.
T Consensus 93 l~~a~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~ 128 (333)
T TIGR03217 93 LKAAYDAG-ARTVRVATHCTEADVSEQHIGMARELGM 128 (333)
T ss_pred HHHHHHCC-CCEEEEEeccchHHHHHHHHHHHHHcCC
Confidence 44444444 333333332 23444555555555553
No 228
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.67 E-value=2.1e+02 Score=24.91 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~ 220 (311)
.+.+.... +-+.|-+-|++.+.+= +. ....++.+++++++..=-.||..+. +.++++++++. |-.|.
T Consensus 17 ~~~e~a~~-~~~al~~~Gi~~iEit---~~----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fi 84 (204)
T TIGR01182 17 DDVDDALP-LAKALIEGGLRVLEVT---LR----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFI 84 (204)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEEe---CC----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEE
Confidence 34444433 3445566676555433 22 2356677777776643356888886 78888887654 34554
Q ss_pred EeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 221 SNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 221 ~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
+ +|.. ..+++++|+++||.+++
T Consensus 85 v-----sP~~----~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 V-----SPGL----TPELAKHAQDHGIPIIP 106 (204)
T ss_pred E-----CCCC----CHHHHHHHHHcCCcEEC
Confidence 3 2222 12599999999998885
No 229
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=37.62 E-value=3.4e+02 Score=25.22 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 74 ~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
.++..+++++.-+. |++.+--+- |.+-. .++..+-+.+........=+.+-|.||.. ...+..+...+-
T Consensus 127 ~~~~~~~i~~i~~~~~i~~VvltG--GEPL~----~~d~~L~~ll~~l~~i~~~~~iri~tr~~----~~~p~rit~el~ 196 (321)
T TIGR03821 127 KAQWKEALEYIAQHPEINEVILSG--GDPLM----AKDHRLDWLLNLLEQIPHLKRLRIHTRLP----VVIPDRITSGLC 196 (321)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC--ccccc----CCchHHHHHHHHHHhCCCCcEEEEecCcc----eeeHHHhhHHHH
Confidence 35666666665534 787654332 32211 11333444443221110014566777763 234445655555
Q ss_pred HHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCccceEe-ec----CCcHHHHHHHHHHHHhcCC
Q 021542 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVG-VS----NYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~iG-vs----~~~~~~~~~~~~~~~~~~~ 217 (311)
+.|++.+.+.+ +.+|--.+ .-.+++.++++.|++.|..-.+= +- |.+.+.+.++.+.+...|+
T Consensus 197 ~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv 265 (321)
T TIGR03821 197 DLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGV 265 (321)
T ss_pred HHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC
Confidence 66666654433 22354221 33467888888899888532111 11 3366777777776655555
No 230
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.37 E-value=3.3e+02 Score=25.01 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCC-C---CCcHHHHHHHHHHHHc--Ccc-ceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~-~---~~~~~~~~~l~~l~~~--G~i-r~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+.+.+++.++..++. -+|-+++-.-. . ...+|-.+.++..++. |+| --.|++..+.....++.+.+++
T Consensus 22 vD~~a~~~lv~~li~~----Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIAA----GVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHHc----CCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 5666666666644443 36655554432 1 4466767777777754 666 6788999988888888888898
Q ss_pred cCCC-eeEeeecCCccccCccccChhhHHHhcCceEEEcc-ccccc
Q 021542 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQG 258 (311)
Q Consensus 215 ~~~~-~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s-~l~~G 258 (311)
.|.. +.++--.|+-..+..-..-....|++-+++++.|. |...|
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg 143 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTG 143 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 8864 55555555555432211113344666699999998 54444
No 231
>PLN02591 tryptophan synthase
Probab=37.37 E-value=3.1e+02 Score=24.63 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=9.5
Q ss_pred CccceEEeecCCC
Q 021542 161 SSVELYQLHWAGI 173 (311)
Q Consensus 161 d~iDl~~lh~p~~ 173 (311)
..+|++-|--|-+
T Consensus 28 ~Gad~iElGiPfS 40 (250)
T PLN02591 28 CGADVIELGVPYS 40 (250)
T ss_pred CCCCEEEECCCCC
Confidence 4688888887754
No 232
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.28 E-value=2.7e+02 Score=26.31 Aligned_cols=90 Identities=9% Similarity=0.103 Sum_probs=59.6
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+.||.|+. ++.+++++++.++.++ |+ |+++=+. |.+.++++++.+.++..+ ..++-++||
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~--~kVnLIPyN 293 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLD--CKINVIPLN 293 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCC--CcEEEEccC
Confidence 77898764 2457899999877644 32 2354454 456788888888877543 567788888
Q ss_pred ccccC---ccc---cChhhHHHhcCceEEEcccccc
Q 021542 228 LIYRK---PEE---NGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 228 ~~~~~---~~~---~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
+.... +.. ....+..+++||.+......+.
T Consensus 294 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 294 TEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 84321 111 1356667888999988876654
No 233
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.28 E-value=1.7e+02 Score=26.11 Aligned_cols=102 Identities=17% Similarity=0.103 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCC-----C-CCcHHHHHHHHHHHHc-CccceEeec---CCcHHHHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAG-----I-WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEK 211 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~-----~-~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~~~~~~~~ 211 (311)
++.+.. ..+-+.|.++|+++|++-+..... . .....-|+.++.+++. +..+...++ ..+...++.+.+
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~- 96 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD- 96 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH-
Confidence 455444 444445778888888887542211 0 1112245555555433 235554443 223444444432
Q ss_pred HHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 212 LKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
.++ +.+.+.++.-+.... .+.+++++++|+.+..
T Consensus 97 ---~g~--~~iri~~~~s~~~~~-~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 97 ---LGV--DVVRVATHCTEADVS-EQHIGAARKLGMDVVG 130 (263)
T ss_pred ---cCC--CEEEEEechhhHHHH-HHHHHHHHHCCCeEEE
Confidence 222 333322222111111 1367777777776544
No 234
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=37.22 E-value=99 Score=27.03 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCc-cceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCCccccC
Q 021542 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 156 ~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (311)
..+|.||+=+++.- +|...+.+.+-+ +.+.-. +..+||..- +.+.+.++++. ..++++|+.-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a~~----i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQARE----IASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHHHH----HHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 35889998887765 555444444333 333333 789998754 77888888766 67999998743
Q ss_pred ccccChhhHHHhcC-ceEE
Q 021542 233 PEENGVKAACDELG-ITLI 250 (311)
Q Consensus 233 ~~~~~ll~~~~~~g-i~v~ 250 (311)
+..+.++..+++. +.++
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 2223555555543 4443
No 235
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.11 E-value=2e+02 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=22.4
Q ss_pred EEeecCCCCCcHHHHHHHHHHHHcCccceEeec
Q 021542 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 166 ~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs 198 (311)
.++|.-+..+.++-+..|+.+.+.| +|++|+.
T Consensus 97 ~~l~~ega~~~~~dl~~L~~~~~~G-vR~lglt 128 (313)
T COG2355 97 AVLHMEGAEPLGDDLDKLELFHALG-VRSLGLT 128 (313)
T ss_pred EEEeccCcccccccHHHHHHHHHhC-ceEEEee
Confidence 3445544456666688888888888 8888765
No 236
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=37.01 E-value=3.5e+02 Score=25.22 Aligned_cols=111 Identities=10% Similarity=-0.010 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCC-CccceEEeecCCCC--CcHHHHHHHHHHHHcCccceEeecCC----cHHHH-HHHHHHHHhcCCCee
Q 021542 149 AALKDSLFRLGL-SSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRL-RNAYEKLKKRGIPLA 220 (311)
Q Consensus 149 ~~l~~sL~~L~~-d~iDl~~lh~p~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~----~~~~~-~~~~~~~~~~~~~~~ 220 (311)
+.+++.++.+.. .-+.-+.|-.-|+. +...+.+.++.+.+-+.++.|.++.- .+..+ .++++..+..+.+..
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~ 224 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLM 224 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEE
Confidence 444444444421 12223344433442 23346666777777666655554332 11111 233333444444332
Q ss_pred EeeecCCcc-ccCccccChhhHHHhcCceEEEccccccccc
Q 021542 221 SNQVNYSLI-YRKPEENGVKAACDELGITLIAYCPIAQGAL 260 (311)
Q Consensus 221 ~~q~~~n~~-~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L 260 (311)
.+- ..|.- +....-.+.++.+++.||.+..-+++..|.-
T Consensus 225 ~vs-h~nh~~Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvn 264 (331)
T TIGR00238 225 LVT-HINHCNEITEEFAEAMKKLRTVNVTLLNQSVLLRGVN 264 (331)
T ss_pred EEc-cCCChHhCCHHHHHHHHHHHHcCCEEEeecceECCcC
Confidence 221 12221 1111112466778899999999999998853
No 237
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=36.90 E-value=1.8e+02 Score=26.90 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCc-c-ceEeecCCcHHHHH-------------HHHHHHHhcCCCeeEeeecCCccccCcc---c--cChh
Q 021542 180 IDGLGDAVEQGL-V-KAVGVSNYSEKRLR-------------NAYEKLKKRGIPLASNQVNYSLIYRKPE---E--NGVK 239 (311)
Q Consensus 180 ~~~l~~l~~~G~-i-r~iGvs~~~~~~~~-------------~~~~~~~~~~~~~~~~q~~~n~~~~~~~---~--~~ll 239 (311)
-+.|+.|++.|. + -.||+=+++.+.++ ++++.++..|+.+.+ .+.+.+-..... + ...+
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~-~~i~G~P~~se~ea~ed~~~ti 195 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKA-YLLFKPPFLSEKEAIADMISSI 195 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEE-EEEecCCCCChhhhHHHHHHHH
Confidence 345566777887 3 67898887765553 556666667765333 222222111110 0 0246
Q ss_pred hHHHhcCceEEEccccc
Q 021542 240 AACDELGITLIAYCPIA 256 (311)
Q Consensus 240 ~~~~~~gi~v~a~s~l~ 256 (311)
+.+.+.+ ..+...|+.
T Consensus 196 ~~~~~l~-~~vs~~~l~ 211 (313)
T TIGR01210 196 RKCIPVT-DTVSINPTN 211 (313)
T ss_pred HHHHhcC-CcEEEECCE
Confidence 6666665 555555544
No 238
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=36.86 E-value=26 Score=24.21 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCChhHhh
Q 021542 292 RIKELGENYSKTSTQAS 308 (311)
Q Consensus 292 ~l~~iA~~~g~s~~q~a 308 (311)
.+.+||+++|+++.+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999999874
No 239
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.78 E-value=2.2e+02 Score=22.76 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al-~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
+...+++..++ ++|+..+|+...-.. |+++-.+.+... +=+.|++-.+ ... ...+.+-+
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~---------e~~v~aa~e~~a-----dii~iSsl~~-----~~~-~~~~~~~~ 75 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP---------EEIARQAVEADV-----HVVGVSSLAG-----GHL-TLVPALRK 75 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEcCchh-----hhH-HHHHHHHH
Confidence 66778888888 459999998655433 877777766543 3344444432 223 33455555
Q ss_pred HHHHhCCCccce-EEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHH
Q 021542 154 SLFRLGLSSVEL-YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 154 sL~~L~~d~iDl-~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~ 210 (311)
.|+..+.+ |+ +++..- .+. +..++|++.|.-+.|+..+--.+.+..+.+
T Consensus 76 ~L~~~g~~--~i~vivGG~--~~~----~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 76 ELDKLGRP--DILVVVGGV--IPP----QDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHhcCCC--CCEEEEeCC--CCh----HhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 56666654 44 344321 111 124568999999999988855455554433
No 240
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=36.64 E-value=3.5e+02 Score=26.31 Aligned_cols=110 Identities=8% Similarity=0.009 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|++..+..+.+=++|.|-+-..-..-+.+.+-+.+++-.. +..-+.++.++-|++.. ...++++|-
T Consensus 76 ~~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p--~~~~~pvi~v~tpgf~g~~~~G~~~a~~al~ 153 (432)
T TIGR01285 76 DEHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHP--QHKGTAVVTVNTPDFKGSLEDGYAAAVESII 153 (432)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhcc--cccCCeEEEecCCCcCCchHHHHHHHHHHHH
Confidence 77777777765433224557777766431112233333333322111 11236788899888732 333444442
Q ss_pred -HHH--------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 185 -DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 185 -~l~--------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
++. +.++|.-||-++..+..+.++.+..+..|+++.+
T Consensus 154 ~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~ 199 (432)
T TIGR01285 154 EAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPII 199 (432)
T ss_pred HHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEE
Confidence 222 1456888887777666677777777778877643
No 241
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=36.59 E-value=2e+02 Score=26.53 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCC-----CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCC
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~ 218 (311)
.+.+++.|.+-+++.++|++=++..-..++ .+..+.+++|++..+++.-. .++..+...... ..|
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl--~~g-- 200 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAAL--EAG-- 200 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHH--HTT--
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHH--HCC--
Confidence 567889999999999999777776666544 23456899999999886322 222222222221 122
Q ss_pred eeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
..++ ++.|-..... .++.+.++++|+.+..
T Consensus 201 ~~fv--N~tP~~~a~~-P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 201 VPFV--NGTPSNIADD-PALVELAEEKGVPIAG 230 (295)
T ss_dssp EEEE--E-SSSTTTTS-HHHHHHHHHHTEEEEE
T ss_pred CCeE--eccCccccCC-HHHHHHHHHcCCCeec
Confidence 2222 2222222211 1599999999998764
No 242
>PLN02489 homocysteine S-methyltransferase
Probab=36.34 E-value=3.7e+02 Score=25.22 Aligned_cols=174 Identities=12% Similarity=0.061 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCC-CC----chHHHHHHHHHh---ccC----------------CCCCCcE
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFG-AI----NSETLLGRFIKE---RKQ----------------RDPEVEV 129 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~-~~----~sE~~lg~aL~~---~~~----------------~~~R~~~ 129 (311)
++...++=+..+++|-+.|-|..+-.+..... .. ..+++.-.+++- ... ...+.++
T Consensus 54 Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (335)
T PLN02489 54 PHLIRKVHLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRPI 133 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEecccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCCc
Confidence 46777777888899999998876654421100 00 113344333321 100 0013468
Q ss_pred EEEecCCCCC------------C--CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC--ccc
Q 021542 130 TVATKFAALP------------W--RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVK 193 (311)
Q Consensus 130 ~i~tK~~~~~------------~--~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G--~ir 193 (311)
+|+.=+++.. + ..+.+.++......++.|--.-+|++.+.-. ....|+..+++.+++.+ +--
T Consensus 134 ~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~--~~l~E~~a~~~~~~~~~~~~p~ 211 (335)
T PLN02489 134 LVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI--PNKLEAQAYVELLEEENIKIPA 211 (335)
T ss_pred EEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc--CChHHHHHHHHHHHHcCCCCeE
Confidence 8888887632 1 1456888888888888875566999999754 24566666666666664 444
Q ss_pred eEeecCC------cHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhc-CceEEEcc
Q 021542 194 AVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYC 253 (311)
Q Consensus 194 ~iGvs~~------~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~-gi~v~a~s 253 (311)
.|.++.. +...+.++++.++.. ..++++-+++. .+..-. .+++..+.. ++.+++|-
T Consensus 212 ~iS~t~~~~~~l~~G~~~~~~~~~~~~~-~~~~~iGiNC~--~p~~~~-~~l~~l~~~~~~pl~vyP 274 (335)
T PLN02489 212 WISFNSKDGVNVVSGDSLLECASIADSC-KKVVAVGINCT--PPRFIH-GLILSIRKVTSKPIVVYP 274 (335)
T ss_pred EEEEEeCCCCccCCCCcHHHHHHHHHhc-CCceEEEecCC--CHHHHH-HHHHHHHhhcCCcEEEEC
Confidence 5555531 123355555554322 24566666664 222111 355555544 66666653
No 243
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.21 E-value=3.5e+02 Score=24.92 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=65.5
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC------------
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------ 137 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~------------ 137 (311)
..+|.+...++++..++.|++-|=..-..|-..+--...-++++-.+.+.... |-.+++.+-...
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g---rvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG---RVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHHH
Confidence 45788999999999999999866444333332110111223444455544431 333444333211
Q ss_pred ----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 138 ----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 138 ----------~~--~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
.| +..+.+.+...++...+.. +.+.+++-|.|......-..+.+.+|.+-.-|..|=-|+ +..++
T Consensus 101 ~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~--~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~ 177 (309)
T cd00952 101 DLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV--PEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGAL 177 (309)
T ss_pred HhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC--CCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHH
Confidence 01 1234455666666555542 136666666665433222234444444334444444444 44444
Q ss_pred HHH
Q 021542 206 RNA 208 (311)
Q Consensus 206 ~~~ 208 (311)
.++
T Consensus 178 ~~~ 180 (309)
T cd00952 178 LSD 180 (309)
T ss_pred HHH
Confidence 443
No 244
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=36.18 E-value=2.2e+02 Score=27.66 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEee-cCCC-----------CC-c---HHHHHHHH-HHHHcCccceEeecCCcH
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WG-N---EGFIDGLG-DAVEQGLVKAVGVSNYSE 202 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~-----------~~-~---~~~~~~l~-~l~~~G~ir~iGvs~~~~ 202 (311)
..+.+.+...+++.+ .|+.|+|.+|.+- -|.. .+ . .+.++... .|.+.|. +.+|+|||..
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 477888888888776 4779999999984 3322 11 1 13445444 4556666 9999999975
No 245
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.02 E-value=1.7e+02 Score=26.49 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=8.8
Q ss_pred HHHHHHhCCCccceE
Q 021542 152 KDSLFRLGLSSVELY 166 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~ 166 (311)
-..|.++|+++|++-
T Consensus 27 a~~L~~~Gv~~iE~G 41 (275)
T cd07937 27 AEALDEAGFFSLEVW 41 (275)
T ss_pred HHHHHHcCCCEEEcc
Confidence 455556666666554
No 246
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.99 E-value=3.7e+02 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta 95 (311)
.+.++..++++..-++|+..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 345888999999999999999985
No 247
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.84 E-value=2.4e+02 Score=23.03 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCCeEEC
Q 021542 75 KAAKAAFDTSLDNGITFFDT 94 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dt 94 (311)
|...+.++.|++.|.++|++
T Consensus 13 ent~~a~~~a~~~g~~~iE~ 32 (189)
T cd08556 13 ENTLAAFRKALEAGADGVEL 32 (189)
T ss_pred chHHHHHHHHHHcCCCEEEE
Confidence 77888999999999998864
No 248
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=35.70 E-value=3.6e+02 Score=24.97 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHCCCCeEEC---Cc-----ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dt---a~-----~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~ 145 (311)
.++..+....+.+.|+..||- ++ .||.|.. --..-+.+.+.++...... -.++-|+.|+... ++ +.+
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~--Ll~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~~ 148 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGAT--LLKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SGE 148 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchH--hhcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cch
Confidence 366666667778889999993 22 2333210 0011344555555432111 1246788887531 22 122
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCC---CcHH-HHHHHHHHHHcCccceEeecCC-cHHHHHHHHH
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGIW---GNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~---~~~~-~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~ 210 (311)
.. ..+-+.|+..| +|.+.+|..... .... -|+.+.++++.-.|--||..+. +++++.++++
T Consensus 149 ~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~ 214 (312)
T PRK10550 149 RK-FEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMA 214 (312)
T ss_pred HH-HHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHh
Confidence 22 34555566666 677788865331 1111 3788888888877888888776 7777777764
No 249
>PRK09082 methionine aminotransferase; Validated
Probab=35.54 E-value=3.8e+02 Score=25.15 Aligned_cols=150 Identities=13% Similarity=0.019 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhc-cCCCCCC-cEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-KQRDPEV-EVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~-~~~~~R~-~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+...+.+..+++.+.+ .|+... |...-++.+.+.+... ......+ ++++ |-.+ . .++.
T Consensus 46 ~~~~~~~~~~~~~~~~------~Y~~~~--G~~~lr~~~a~~l~~~~~~~~~~~~~i~~-t~G~-------~----~al~ 105 (386)
T PRK09082 46 PYLVEALAYAMAAGHN------QYPPMT--GVAALREAIAAKTARLYGRQYDADSEITV-TAGA-------T----EALF 105 (386)
T ss_pred HHHHHHHHHHHHcCCC------CCCCCC--CcHHHHHHHHHHHHHHhCCCCCCCCcEEE-eCCH-------H----HHHH
Confidence 4566777777775542 454422 1112245566666543 2111112 3444 3231 1 2333
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeec--CC--cHHHHHHHHHHHHhcCCCeeEeeecCCc
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS--NY--SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~--~~~~~~~~~~~~~~~~~~~~~~q~~~n~ 228 (311)
..+..+ ++.=|-+++..|........+ +. ..+++..+-+. ++ +.+.+++.+. .+.+..++..+.|+
T Consensus 106 ~~~~~~-~~~gd~Vli~~p~y~~~~~~~---~~--~g~~~~~~~~~~~~~~~d~~~l~~~~~----~~~~~v~l~~p~NP 175 (386)
T PRK09082 106 AAILAL-VRPGDEVIVFDPSYDSYAPAI---EL--AGGRAVRVALQPPDFRVDWQRFAAAIS----PRTRLIILNTPHNP 175 (386)
T ss_pred HHHHHH-cCCCCEEEEeCCCchhhHHHH---HH--cCCEEEEEecCcccccCCHHHHHHhcC----ccceEEEEeCCCCC
Confidence 333333 233466777766543322222 21 13556666553 22 3345544432 12334444444555
Q ss_pred cccC---ccccChhhHHHhcCceEEEccc
Q 021542 229 IYRK---PEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 229 ~~~~---~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
.-.. .+..+++++|+++|+.++.=..
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~ 204 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEV 204 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehh
Confidence 4321 1222578888888888875333
No 250
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.49 E-value=3.7e+02 Score=25.07 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHcC
Q 021542 178 GFIDGLGDAVEQG 190 (311)
Q Consensus 178 ~~~~~l~~l~~~G 190 (311)
++.+.++.+++.|
T Consensus 69 ~~~~ii~~~~~~g 81 (358)
T TIGR02109 69 DLVELVAHARRLG 81 (358)
T ss_pred cHHHHHHHHHHcC
Confidence 3444444455544
No 251
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=35.34 E-value=2.2e+02 Score=28.38 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
.+...+.+++.+++||++ +|.+. ...+..-...+.+.+++|+++|.|-
T Consensus 67 ~~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 356778899999999997 57432 1111122456889999999999983
No 252
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.33 E-value=3e+02 Score=23.97 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..++++..++++.|.+.|+.-+=..+.| -....+.|++ .++-|+|=+++.......+.-...
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E 75 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYE 75 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHH
Confidence 3567999999999999987655443333 3444555542 356777777653333444444455
Q ss_pred HHHHHHHhCCCccceEEeecC-CCCCcHHHHHHHHHHHHc--Ccc-ce-EeecCCcHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 151 LKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ--GLV-KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p-~~~~~~~~~~~l~~l~~~--G~i-r~-iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
+++.+ ++|.|-||+++--.. ..-..+.+.+.|.+.++. |+. +- +-.+-.+.+++..+.+.+.+.| .+++...
T Consensus 76 ~~~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaG--ADfvKTs 152 (211)
T TIGR00126 76 TKEAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAG--ADFVKTS 152 (211)
T ss_pred HHHHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC--CCEEEeC
Confidence 55555 479999999876542 113456677777777764 542 22 2222245577777777766655 4555555
Q ss_pred --CCccccCccccChhhHHHhcCceEEE
Q 021542 226 --YSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 226 --~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
|..-.-..+.-.++...-...+++.+
T Consensus 153 TGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 153 TGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHhccCCeEEE
Confidence 65433332221233222223566666
No 253
>PRK12569 hypothetical protein; Provisional
Probab=35.26 E-value=1.5e+02 Score=26.56 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=51.9
Q ss_pred eecccccCC--CCCCCCCcCChhhHHHHHHHHHHH-HHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCc
Q 021542 52 GVGAWSWGD--TSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVE 128 (311)
Q Consensus 52 glG~~~~g~--~~~~~~~~~~~~~~~~a~~~l~~A-l~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~ 128 (311)
+||.|.+|. + ++...+|..| +.+|. +.|+ ...+-+.++-.. ...
T Consensus 14 sfG~~~~g~~~D-------------~~lmp~ItsaNIACG~-------HAGD---------p~~M~~tv~lA~----~~~ 60 (245)
T PRK12569 14 GFGPWRIGDGVD-------------EALMPLISSANIATGF-------HAGD---------PNIMRRTVELAK----AHG 60 (245)
T ss_pred CCCCcCCCCccH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcC
Confidence 778888876 4 7777888877 46675 5676 777888887665 367
Q ss_pred EEEEecCCCC--------CCCCCHHHHHHHHHHHHHHh
Q 021542 129 VTVATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (311)
Q Consensus 129 ~~i~tK~~~~--------~~~~~~~~i~~~l~~sL~~L 158 (311)
+-|-..-+.. ....++++++..+...+..|
T Consensus 61 V~IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL 98 (245)
T PRK12569 61 VGIGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGAL 98 (245)
T ss_pred CEeccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 7777776642 23467788888777776666
No 254
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=34.90 E-value=3.8e+02 Score=25.23 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHH---HH--H---HcCccceEeecC-CcHHHHHHHHH
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLG---DA--V---EQGLVKAVGVSN-YSEKRLRNAYE 210 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~---~l--~---~~G~ir~iGvs~-~~~~~~~~~~~ 210 (311)
..+|+.|.- |...-++..+..+...+-..++-.+- .+ . ..|++-||-.-+ |+++++.++++
T Consensus 110 ~~LD~lL~G-G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 110 RELDKILEG-GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred HHHHHhhcC-CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 456655543 77888899998864433322222211 11 1 236888888776 68888888844
No 255
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.87 E-value=3.3e+02 Score=24.28 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECC
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta 95 (311)
.+.++..++++.-.+.|+..|+..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 345888899999999999999986
No 256
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=34.77 E-value=2.1e+02 Score=24.40 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcc
Q 021542 84 SLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSV 163 (311)
Q Consensus 84 Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~i 163 (311)
+-..|..++.-+ +-|+++- |..+++.|.+.+ .++++.-=. .+.+++.+++.+...++.+.-.+.
T Consensus 29 aR~l~~~~iNLG-fsG~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~hP 92 (178)
T PF14606_consen 29 ARRLGLDVINLG-FSGNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAHP 92 (178)
T ss_dssp HHHHT-EEEEEE--TCCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-S
T ss_pred HHHcCCCeEeee-ecCcccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhCC
Confidence 445588888754 4566776 999999999986 566665544 347888999999999999977764
Q ss_pred c--eEEee
Q 021542 164 E--LYQLH 169 (311)
Q Consensus 164 D--l~~lh 169 (311)
| ++++-
T Consensus 93 ~tPIllv~ 100 (178)
T PF14606_consen 93 DTPILLVS 100 (178)
T ss_dssp SS-EEEEE
T ss_pred CCCEEEEe
Confidence 4 55554
No 257
>PRK12928 lipoyl synthase; Provisional
Probab=34.75 E-value=3.4e+02 Score=24.87 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccC---CCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYG---SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg---~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (311)
.+.++..+.++.+.+.|++++-...... .... -..+.+.++... ...-.+..++ .+++.+.
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g------~~~~~ell~~Ik----~~~p~~~I~~------ltp~~~~ 150 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGG------AAHFVATIAAIR----ARNPGTGIEV------LTPDFWG 150 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccC------HHHHHHHHHHHH----hcCCCCEEEE------ecccccc
Q ss_pred HHHHHHHHHhCCCccceEEe---------ecCCC-CCcHHHHHHHHHHHHcC---ccc---eEeecCCcHHHHHHHHHHH
Q 021542 149 AALKDSLFRLGLSSVELYQL---------HWAGI-WGNEGFIDGLGDAVEQG---LVK---AVGVSNYSEKRLRNAYEKL 212 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~l---------h~p~~-~~~~~~~~~l~~l~~~G---~ir---~iGvs~~~~~~~~~~~~~~ 212 (311)
+ .++.|+.|.-...|++.. ....+ ...++.++.++.+++.| .+. -+|+ +=+.+++.+.+..+
T Consensus 151 ~-~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~L 228 (290)
T PRK12928 151 G-QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDL 228 (290)
T ss_pred C-CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHH
Q ss_pred HhcCCCeeEe---------eecCCccccCccccChhhHHHhcCceEEEcccc
Q 021542 213 KKRGIPLASN---------QVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (311)
Q Consensus 213 ~~~~~~~~~~---------q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l 255 (311)
++.+....-+ +.+..=+....+-..+-+.+.+.|...++.+||
T Consensus 229 rel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 229 RAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred HhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 258
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=34.71 E-value=3.2e+02 Score=25.64 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCC---CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRAS---FGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~---~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL 155 (311)
+.++...++|+|.+-..---.+... -+...+.+.+-++++...+.. =+.+-+-.=.|. ...+.+.+++.++..+
T Consensus 99 e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g-~~~v~iDli~Gl--Pgqt~~~~~~~l~~~~ 175 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAG-FENISIDLIYDT--PLDNKKLLKEELKLAK 175 (350)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCEEEEEeecCC--CCCCHHHHHHHHHHHH
Confidence 4566666779987732222111000 011111444445555443110 012222222222 2477888888887655
Q ss_pred HHhCCCccceEEeec-CCC---------CCcHHH-HHHHHHHHHcCccceEeecCCc
Q 021542 156 FRLGLSSVELYQLHW-AGI---------WGNEGF-IDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 156 ~~L~~d~iDl~~lh~-p~~---------~~~~~~-~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
+++.++|.++.+.- |+. .+.++. ..+.+.|.+.|. ..+++|||.
T Consensus 176 -~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 176 -ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred -hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 59999999988763 322 112222 333455666674 568888875
No 259
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=34.67 E-value=3.6e+02 Score=24.68 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEe-ecCCC--CC-cHH---HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhc
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQL-HWAGI--WG-NEG---FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR 215 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~l-h~p~~--~~-~~~---~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~ 215 (311)
+.+.+.+..++.+ .-|.|-||+=-- -+|+. .+ .+| +...++.++++-.+ -|.|-+++++.++++++.
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~---- 109 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKA---- 109 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHc----
Confidence 4555555544443 347788887533 33544 22 233 55566777754233 489999999999999764
Q ss_pred CCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHH
Q 021542 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKE 295 (311)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~ 295 (311)
|..+ +|=+ +-+. . . +.++.|+++|..++.+.- .|. +. .......|. .........+++..+
T Consensus 110 Gadi-INDI--~g~~-d-~--~~~~~~a~~~~~vVlmh~--~g~------p~---~~~~~~~y~-dv~~~v~~~l~~~i~ 170 (282)
T PRK11613 110 GAHI-INDI--RSLS-E-P--GALEAAAETGLPVCLMHM--QGN------PK---TMQEAPKYD-DVFAEVNRYFIEQIA 170 (282)
T ss_pred CCCE-EEEC--CCCC-C-H--HHHHHHHHcCCCEEEEcC--CCC------CC---ccccCCCcc-cHHHHHHHHHHHHHH
Confidence 3222 2222 1121 1 1 478889999999988743 221 00 000001121 122233334445566
Q ss_pred HHHhcCCChhHhhh
Q 021542 296 LGENYSKTSTQAST 309 (311)
Q Consensus 296 iA~~~g~s~~q~al 309 (311)
.|.+.|++..++.+
T Consensus 171 ~a~~~GI~~~~Iil 184 (282)
T PRK11613 171 RCEAAGIAKEKLLL 184 (282)
T ss_pred HHHHcCCChhhEEE
Confidence 78888887776654
No 260
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=34.61 E-value=74 Score=30.32 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccc
Q 021542 180 IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
.+++.+|.+.|.+.+|-.--...-.+..+... +-.--...|.....+.-+. +++.|+++||.++.-+-=..+
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~------~~~~p~~gY~~~~~~~L~~-~L~~~~~~gIkvI~NaGg~np- 83 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDYLAERTMAILARA------KRKDPTKGYAPDFVRDLRP-LLPAAAEKGIKVITNAGGLNP- 83 (362)
T ss_pred HHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH------HhhCCCCCchHHHHHHHHH-HHHHHHhCCCCEEEeCCCCCH-
Q ss_pred cCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhhh
Q 021542 260 LTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQAST 309 (311)
Q Consensus 260 L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~al 309 (311)
....+.++++|+++|.+ ..+|.
T Consensus 84 ---------------------------~~~a~~v~eia~e~Gl~-lkvA~ 105 (362)
T PF07287_consen 84 ---------------------------AGCADIVREIARELGLS-LKVAV 105 (362)
T ss_pred ---------------------------HHHHHHHHHHHHhcCCC-eeEEE
No 261
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=34.60 E-value=1.9e+02 Score=28.95 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.1
Q ss_pred eEECCcccCCCCCC-CC---C-chHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCC----HHHHHHHHH
Q 021542 91 FFDTAEVYGSRASF-GA---I-NSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLG----RQSVLAALK 152 (311)
Q Consensus 91 ~~Dta~~Yg~g~~~-~~---~-~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~---------~~~~~----~~~i~~~l~ 152 (311)
+|+|+..|.+|.-= || . ..-.++.++++..+ .+++..+=.-.. ....+ .+.....+.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 80 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHK 80 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67888888665420 11 1 33456666665544 344444333210 01122 255678889
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc-eEeecCC
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNY 200 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~ 200 (311)
+.+++||++ .|.+. .-.++.-.+.+.+.+.+|.++|.|- .-+-..|
T Consensus 81 ~~~~~l~i~-~d~~~-~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~ 127 (556)
T PRK12268 81 EDFKKLGIS-YDLFT-RTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAY 127 (556)
T ss_pred HHHHHcCCc-CCCCc-CCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEe
Confidence 999999997 47431 1111122567899999999999883 3333333
No 262
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=34.60 E-value=1.3e+02 Score=22.97 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHh---CCCccc----------eEEeecCCCCCcHHHHHHHHHHHHc---CccceEeecCCc
Q 021542 142 LGRQSVLAALKDSLFRL---GLSSVE----------LYQLHWAGIWGNEGFIDGLGDAVEQ---GLVKAVGVSNYS 201 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L---~~d~iD----------l~~lh~p~~~~~~~~~~~l~~l~~~---G~ir~iGvs~~~ 201 (311)
.+.+.|.++|+..|..- +++|-| ++-+-.-+..+..+++.+|++.+++ ..||-||+.|..
T Consensus 11 l~~~~i~~Qv~~ll~qG~~i~iE~ad~r~~r~~~W~mW~~p~~~~~~~~~Vl~el~~c~~~~p~~yVRlig~D~~~ 86 (99)
T PF00101_consen 11 LTDEEIAKQVRYLLSQGWIIGIEHADPRRFRTSYWQMWKLPMFGCTDPAQVLAELEACLAEHPGEYVRLIGFDNKR 86 (99)
T ss_dssp --HHHHHHHHHHHHHTT-EEEEEEESCGGSTSSS-EEESSEBTTBSSHHHHHHHHHHHHHHSTTSEEEEEEEETTT
T ss_pred CCHHHHHHHHHhhhhcCceeeEEecCCCCCCCCEeecCCCCCcCCCCHHHHHHHHHHHHHhCCCceEEEEEEcCcc
Confidence 56778999999888873 333333 2222222335678899999999977 679999998864
No 263
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=34.45 E-value=79 Score=30.42 Aligned_cols=69 Identities=12% Similarity=-0.029 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCcc---ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 179 FIDGLGDAVEQGLV---KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 179 ~~~~l~~l~~~G~i---r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
-++.+.+|++.-.+ -.-|-+.++.+.+..+++. --++++|....-+----+-..+.+.|+.+|+.+...
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 36677777776542 2337777888888888764 347778777655432112224889999999998775
No 264
>PRK11059 regulatory protein CsrD; Provisional
Probab=34.40 E-value=2e+02 Score=29.29 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHh-CCCccceEEeecCCC---CCcHHHHHHHHHHHHcCccceEeecCCc--HHHHHHHHHHHHhc
Q 021542 142 LGRQSVLAALKDSLFRL-GLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKR 215 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L-~~d~iDl~~lh~p~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~~~~~~~~~~~~ 215 (311)
..-..+...+...|... +.. -+-+.+.-++. ...+.+...+..|++.|. .|++.+|. ...+..+..
T Consensus 495 l~~~~f~~~l~~~l~~~~~~~-~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~L~~----- 566 (640)
T PRK11059 495 LLSRAFQRWLRDTLLQCPRSQ-RKRLIFELAEADVCQHISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSYIKE----- 566 (640)
T ss_pred hCChhHHHHHHHHHHhcCCCC-cceEEEEEechhhhcCHHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHHh-----
Confidence 33345667777777776 543 46677766654 446788999999999994 44454542 122222221
Q ss_pred CCCeeEeeecCCccccCc---cc----cChhhHHHhcCceEEEccc
Q 021542 216 GIPLASNQVNYSLIYRKP---EE----NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~---~~----~~ll~~~~~~gi~v~a~s~ 254 (311)
++|+.+-+.-+++..-. +. ..+++.|+..|+.++|-+.
T Consensus 567 -l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegV 611 (640)
T PRK11059 567 -LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGV 611 (640)
T ss_pred -CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEe
Confidence 47777776665554311 11 1479999999999998544
No 265
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.33 E-value=2.6e+02 Score=27.09 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCCc
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~ 228 (311)
++-..+..|--.-..++.... ...++...|++... ++-+..++ +...++++.+..++ +++..+...+-||
T Consensus 104 A~~~al~~L~~~g~~iV~~~~----~Y~gT~~~l~~~~~----~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPsNP 174 (409)
T KOG0053|consen 104 AITVALLHLLPAGDHIVATGD----VYGGTLRILRKFLP----KFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPSNP 174 (409)
T ss_pred HHHHHHHHhcCCCCcEEEeCC----CcccHHHHHHHHHH----HhCceeeeechhhHHHHHHhhcc-CceEEEEECCCCC
Confidence 344444444433344444432 23455555555554 33333343 55666666665554 4677788888899
Q ss_pred cccCccccChhhHHHhcCceEEEcccccccccC
Q 021542 229 IYRKPEENGVKAACDELGITLIAYCPIAQGALT 261 (311)
Q Consensus 229 ~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~ 261 (311)
+..-.+-..+.+.|+++|+-++.=.+++.+.+.
T Consensus 175 ll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~ 207 (409)
T KOG0053|consen 175 LLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQ 207 (409)
T ss_pred ccccccHHHHHHHHhhCCCEEEEeCCcCccccc
Confidence 887665556899999999999998888887543
No 266
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.31 E-value=2.7e+02 Score=25.03 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
+..+-+.|.++|+++|.+-. +....+.++..+.+.+.++ .+-.+....+.+.++.+.+. |.+...+-+..
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~-----P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~----g~~~i~i~~~~ 94 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTS-----PAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET----GVDGVDLVFGT 94 (262)
T ss_pred HHHHHHHHHHcCCCEEEEEC-----CCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc----CcCEEEEEEec
Q ss_pred CccccCcccc-----------ChhhHHHhcCceEEEc
Q 021542 227 SLIYRKPEEN-----------GVKAACDELGITLIAY 252 (311)
Q Consensus 227 n~~~~~~~~~-----------~ll~~~~~~gi~v~a~ 252 (311)
|..+...... +.+++++++|+.+...
T Consensus 95 S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 95 SPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
No 267
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.18 E-value=1.6e+02 Score=26.52 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=50.9
Q ss_pred eecccccCCCCCCCCCcCChhhHHHHHHHHHHH-HHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 021542 52 GVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT 130 (311)
Q Consensus 52 glG~~~~g~~~~~~~~~~~~~~~~~a~~~l~~A-l~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~ 130 (311)
+||.|.+|.+ ++.-.+|..| +.+|+ +.|+ ...+-+.++-.. ...+-
T Consensus 13 ~fG~w~~g~D-------------~~lmp~IssANIACG~-------HAGD---------p~~M~~tv~lA~----~~gV~ 59 (246)
T PRK05406 13 SFGAWKMGDD-------------EALLPLVTSANIACGF-------HAGD---------PAVMRRTVRLAK----ENGVA 59 (246)
T ss_pred CCCCCCCCCH-------------HHHHHHhhhHHHhccc-------cCCC---------HHHHHHHHHHHH----HcCCe
Confidence 7888888765 7778888877 46665 5666 677778777654 35777
Q ss_pred EEecCCCC--------CCCCCHHHHHHHHHHHHHHh
Q 021542 131 VATKFAAL--------PWRLGRQSVLAALKDSLFRL 158 (311)
Q Consensus 131 i~tK~~~~--------~~~~~~~~i~~~l~~sL~~L 158 (311)
|-..-+.. ..+.++++++..+...+..|
T Consensus 60 IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 60 IGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred EccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 77776642 23467788877777666666
No 268
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=34.16 E-value=1.4e+02 Score=26.66 Aligned_cols=37 Identities=8% Similarity=0.166 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHH
Q 021542 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~ 213 (311)
..++.+.|+.|+++|..-.| +||.....+...++...
T Consensus 103 ~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~ 139 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAA 139 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHh
Confidence 44677778888888854444 56666666666655433
No 269
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=34.14 E-value=2.6e+02 Score=24.56 Aligned_cols=88 Identities=9% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCeEEC-CcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCC-----CCHHHHHHHHHHHHHHhCCCc
Q 021542 89 ITFFDT-AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR-----LGRQSVLAALKDSLFRLGLSS 162 (311)
Q Consensus 89 in~~Dt-a~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~-----~~~~~i~~~l~~sL~~L~~d~ 162 (311)
.|.++. +.+|..+. ++.+.+|.+..+ +++..+.|+...-.. ...+.+.+.+-+.++-|+ ++
T Consensus 19 F~~VEvn~TFY~~P~-------~~t~~~W~~~~p-----~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~k 85 (230)
T PF01904_consen 19 FNTVEVNSTFYRIPS-------PETVARWREQTP-----EGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EK 85 (230)
T ss_dssp -SEEEE-HHCCSSS--------HHHHHHHHCTS------TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-
T ss_pred CCeEEECcccCCCCC-------HHHHHHHHhhCC-----CCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hc
Confidence 565553 45677653 899999988876 899999999752111 135666466666999998 89
Q ss_pred cceEEeecCCC-CCcHHHHHHHHHHHHc
Q 021542 163 VELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 163 iDl~~lh~p~~-~~~~~~~~~l~~l~~~ 189 (311)
+..+++.-|-. ....+.++.|..+.+.
T Consensus 86 lg~iL~Q~Ppsf~~~~~~~~~l~~~l~~ 113 (230)
T PF01904_consen 86 LGPILFQFPPSFRFTPENLERLDAFLDR 113 (230)
T ss_dssp EEEEEEE--TT--S-HHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCcCCCHHHHHHHHHHHhh
Confidence 99999998754 3345555555555544
No 270
>PRK10551 phage resistance protein; Provisional
Probab=34.06 E-value=1.6e+02 Score=29.43 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCc--HH
Q 021542 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EK 203 (311)
Q Consensus 128 ~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~--~~ 203 (311)
.+.|+-.+.. .....+.+...+.+.|+.++.+..- +.+.-.+. ....+..+.++.|++.| -.|.+.+|. ..
T Consensus 349 ~~~lsINis~--~~l~~~~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G--~~ialDDFGtg~s 423 (518)
T PRK10551 349 GAKLGINISP--AHLHSDSFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQG--IEIAIDDFGTGHS 423 (518)
T ss_pred CcEEEEEeCH--HHHCCchHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCC--CEEEEECCCCCch
Confidence 4555555543 2344456777888888888876432 33333332 33455778899999999 445555553 22
Q ss_pred HHHHHHHHHHhcCCCeeEeeecCCccccCccc-------cChhhHHHhcCceEEEccc
Q 021542 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCP 254 (311)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~ll~~~~~~gi~v~a~s~ 254 (311)
.+..+.. .+++.+-+.-+.+..-..+ ..+++.|++.|+.++|=+.
T Consensus 424 sl~~L~~------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGV 475 (518)
T PRK10551 424 ALIYLER------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGV 475 (518)
T ss_pred hHHHHHh------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 2333322 3666665554444321111 1488999999999987543
No 271
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=34.03 E-value=4e+02 Score=25.02 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+++-...+...... .+-++|.+=+...--.-+.+.+.+.+++ .. -+.++.++-+.+.. ...++.+|.
T Consensus 66 e~l~~~i~~~~~~~~-p~~i~v~~tc~~~liGdDi~~v~~~~~~---~~---~~~vv~~~~~gf~~~~~~G~~~a~~~~~ 138 (399)
T cd00316 66 EKLLEAIINELKRYK-PKVIFVYTTCTTELIGDDIEAVAKEASK---EI---GIPVVPASTPGFRGSQSAGYDAAVKAII 138 (399)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEecCchhhhhccCHHHHHHHHHH---hh---CCceEEeeCCCCcccHHHHHHHHHHHHH
Confidence 555554444333222 2456666655431112233333333332 33 37788888877632 233444444
Q ss_pred HHH---------HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 185 DAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 185 ~l~---------~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
+.. +++.|.-||.++.....+.++.+..+..|+++.++
T Consensus 139 ~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~ 185 (399)
T cd00316 139 DHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNAL 185 (399)
T ss_pred HHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEE
Confidence 332 23458888888764434445544466666665443
No 272
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=33.95 E-value=2.6e+02 Score=29.21 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
|.+.++.+++-+.|++.+- .|.. |..+ ..-+.. -++-|+..|. +.+-..--.+++.
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYse---------qD~~-sMHRqK-----ADEaY~iGk~------l~PV~AYL~idei 98 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYSE---------QDRL-SMHRQK-----ADEAYLIGKG------LPPVGAYLAIDEI 98 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEec---------cchh-hhhhhc-----cccceecccC------CCchhhhhhHHHH
Confidence 7888999999999999774 4643 2222 222222 3788999888 2222333344444
Q ss_pred HHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH------HHhcCCCeeEeeecCCc
Q 021542 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK------LKKRGIPLASNQVNYSL 228 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~------~~~~~~~~~~~q~~~n~ 228 (311)
.+--.-.-+|.+ | |..-=..|--+.-....+.| |++||=|. +.++.+-+- +-+.|++ ++-.-=-+
T Consensus 99 i~iak~~~vdav--H-PGYGFLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~agVp--vVPGTpgP 169 (1176)
T KOG0369|consen 99 ISIAKKHNVDAV--H-PGYGFLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAGVP--VVPGTPGP 169 (1176)
T ss_pred HHHHHHcCCCee--c-CCccccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcCCC--ccCCCCCC
Confidence 444443445543 2 22100112223334456666 89999764 333333211 1222322 11111112
Q ss_pred cccCccccChhhHHHhcCceEEEccccccc
Q 021542 229 IYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 229 ~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
+... .+.+++|+++|.++|-...+++|
T Consensus 170 itt~---~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 170 ITTV---EEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred cccH---HHHHHHHHhcCCcEEEeecccCC
Confidence 2211 15899999999999988888876
No 273
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=33.88 E-value=43 Score=34.26 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=33.4
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
.|+.||++ |++-+++.|+.+.+.+..+|++|+..|-+.
T Consensus 414 ~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 414 QLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 48889998 999999999988999999999999887665
No 274
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=33.83 E-value=1.3e+02 Score=26.35 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHH
Q 021542 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~ 213 (311)
...++.+.|+.|+++|.--.| +||.+...+..+++...
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~g 137 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAA 137 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHH
Confidence 345677888889999854445 67777777776655443
No 275
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=33.60 E-value=1.8e+02 Score=29.74 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCccceE---EeecCCCCCcHHHHHHHHHHHHcC-ccc---------eEeecCCcHHHHHHHHHHHHhcCC
Q 021542 151 LKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQG-LVK---------AVGVSNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~---~lh~p~~~~~~~~~~~l~~l~~~G-~ir---------~iGvs~~~~~~~~~~~~~~~~~~~ 217 (311)
+-..|.+.|.+.|+++ .++..-..-.++-|+.|.++++.. .++ .+|.++++.+.+++.++.+...|+
T Consensus 31 ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gv 110 (592)
T PRK09282 31 IAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGI 110 (592)
T ss_pred HHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCC
Confidence 4444666677777764 111100112345566666666552 122 234455555555555555555544
Q ss_pred CeeEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
.. +.+...+-+...-. ..+++++++|..+.
T Consensus 111 d~--irif~~lnd~~n~~-~~i~~ak~~G~~v~ 140 (592)
T PRK09282 111 DI--FRIFDALNDVRNME-VAIKAAKKAGAHVQ 140 (592)
T ss_pred CE--EEEEEecChHHHHH-HHHHHHHHcCCEEE
Confidence 32 22222221111111 25566666666554
No 276
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=33.58 E-value=3.8e+02 Score=24.61 Aligned_cols=151 Identities=13% Similarity=0.037 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCC---CC--CchHHHHHHHHHh---ccCCCCCCcEEEEecCCCCC------
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASF---GA--INSETLLGRFIKE---RKQRDPEVEVTVATKFAALP------ 139 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~---~~--~~sE~~lg~aL~~---~~~~~~R~~~~i~tK~~~~~------ 139 (311)
++...++-+..+++|-+.|.|..+..+.... +. ...+++.-.+++- ......|.+++|+.=+++..
T Consensus 45 Pe~V~~vH~~yl~AGadiI~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsiGP~g~~l~~~ 124 (304)
T PRK09485 45 PELIYQVHLDYFRAGADCAITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSVGPYGAYLADG 124 (304)
T ss_pred hHHHHHHHHHHHHhCCCEEEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCcccccCCC
Confidence 4666788888899999999988776542110 00 1123444444431 11000122588888888632
Q ss_pred ------CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc--CccceEeecCC------cHHHH
Q 021542 140 ------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY------SEKRL 205 (311)
Q Consensus 140 ------~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~------~~~~~ 205 (311)
+..+.+.++....+..+.|--..+|++++.-. ....|+..+++.+++. ++--.+.++-. +...+
T Consensus 125 ~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~--~~~~E~~~~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~ 202 (304)
T PRK09485 125 SEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETI--PNLDEAEALVELLKEEFPGVPAWLSFTLRDGTHISDGTPL 202 (304)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecc--CCHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCH
Confidence 12467888888888888886567999999854 2455555566666644 55444444421 12335
Q ss_pred HHHHHHHHhcCCCeeEeeecCC
Q 021542 206 RNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+++++..... ..++++-+++.
T Consensus 203 ~~~~~~l~~~-~~~~~iGiNC~ 223 (304)
T PRK09485 203 AEAAALLAAS-PQVVAVGVNCT 223 (304)
T ss_pred HHHHHHHhcC-CCceEEEecCC
Confidence 5555554322 13566666664
No 277
>PTZ00081 enolase; Provisional
Probab=33.51 E-value=2.3e+02 Score=27.79 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC--ccceEee--cCCcHHHHHHHHHHHHhcCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G--~ir~iGv--s~~~~~~~~~~~~~~~~~~~ 217 (311)
.+++++.+-+.+.++.+ ++++|..|-.... |+.+.+|.++= .+.-+|= +..+++.+.++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~~D---~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQDD---WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc---HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 45665555555555554 4677777754333 55555555543 5554443 23568888888765 3
Q ss_pred CeeEeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
..+++|+..|-+-.--+..++...|+++|+.++..
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 46666666665443222235889999999998763
No 278
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.47 E-value=1.5e+02 Score=24.34 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred ccceEeecCC--cHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCCCCCCCC
Q 021542 191 LVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQN 268 (311)
Q Consensus 191 ~ir~iGvs~~--~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~ 268 (311)
.+--+|+..| ....+..+++. ..|.+ .|....+.++ +.+..+.++++.++.-|.+.++
T Consensus 16 lvak~GlDgHd~gakvia~~l~d-----~GfeV---i~~g~~~tp~--e~v~aA~~~dv~vIgvSsl~g~---------- 75 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALAD-----AGFEV---INLGLFQTPE--EAVRAAVEEDVDVIGVSSLDGG---------- 75 (143)
T ss_pred EEeccCccccccchHHHHHHHHh-----CCceE---EecCCcCCHH--HHHHHHHhcCCCEEEEEeccch----------
Q ss_pred CCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 269 PPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
...++..+.+.++++|..
T Consensus 76 -----------------h~~l~~~lve~lre~G~~ 93 (143)
T COG2185 76 -----------------HLTLVPGLVEALREAGVE 93 (143)
T ss_pred -----------------HHHHHHHHHHHHHHhCCc
No 279
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.32 E-value=2.4e+02 Score=26.85 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=60.4
Q ss_pred EEeecCCC-------------CCcHHHHHHHHH-HHHcC---ccceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 166 YQLHWAGI-------------WGNEGFIDGLGD-AVEQG---LVKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 166 ~~lh~p~~-------------~~~~~~~~~l~~-l~~~G---~ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
+.||.++. .+.+++++++.+ +.+.| +|+++=+. |.+.+.+.++++.++.. ...++-++|
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~--~~~VnlIpy 315 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRF--FCKINLIDY 315 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcC--CCeeEEeee
Confidence 67887654 235788888875 45556 24555555 45667788888877643 456778899
Q ss_pred CccccCcccc-------ChhhHHHhcCceEEEcccccc
Q 021542 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~~ 257 (311)
|++....... .+.+..+++|+.+......+.
T Consensus 316 n~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 316 NSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 9887644322 366778889999988776654
No 280
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=33.30 E-value=1.6e+02 Score=26.38 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHH-HcCccceEeecCCc----HHHHHHHHHHHHhcCCCeeEe
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAV-EQGLVKAVGVSNYS----EKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~-~~G~ir~iGvs~~~----~~~~~~~~~~~~~~~~~~~~~ 222 (311)
..+++.|+-.+ +|||++-+-|-.. .-++++++..-++. +-|.--+.|=.-|. ...++++++.|++.| |+++
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~I 101 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDAI 101 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCEE
Confidence 56777777888 7999999998655 22333443333333 33433344422111 233445555555433 4444
Q ss_pred eecCCccccCccc-cChhhHHHhcCceEEE
Q 021542 223 QVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (311)
Q Consensus 223 q~~~n~~~~~~~~-~~ll~~~~~~gi~v~a 251 (311)
.+.-..+....+. ..+++.+++.|..+++
T Consensus 102 EiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 102 EISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4443333322211 1356666666655543
No 281
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=33.25 E-value=3.5e+02 Score=24.09 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCcc
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEV 97 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~ 97 (311)
....+.++.+-+.|+..++....
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~ 38 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD 38 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC
Confidence 34456788888999999987543
No 282
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.12 E-value=3.1e+02 Score=24.30 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=5.1
Q ss_pred HhCCCccceE
Q 021542 157 RLGLSSVELY 166 (311)
Q Consensus 157 ~L~~d~iDl~ 166 (311)
.+|.++|++.
T Consensus 27 ~~G~~~iEl~ 36 (284)
T PRK13210 27 ELGFDFVEMS 36 (284)
T ss_pred HcCCCeEEEe
Confidence 4555555553
No 283
>PRK09875 putative hydrolase; Provisional
Probab=32.82 E-value=3.9e+02 Score=24.53 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=31.8
Q ss_pred HcCccceEeecC--CcHHH---HHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCc
Q 021542 188 EQGLVKAVGVSN--YSEKR---LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 188 ~~G~ir~iGvs~--~~~~~---~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi 247 (311)
+.|.|..||++. .++.. ++.+.....+.|.++.+- ... ..... +.++.+++.|+
T Consensus 119 kaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~H-t~~---~~~g~--e~l~il~e~Gv 177 (292)
T PRK09875 119 KAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTH-TSF---STMGL--EQLALLQAHGV 177 (292)
T ss_pred cccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEc-CCC---ccchH--HHHHHHHHcCc
Confidence 568888999987 34432 334444455666655542 222 11111 47889999998
No 284
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=32.76 E-value=2.1e+02 Score=22.31 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK-~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|--+.|+-| ++ ....+..+++.+.++.+.+. ....|++++-.+.. .+..++.+.|..|.+.
T Consensus 46 R~G~~VsKK~~g---~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 46 RLGLTVAKKNVK---RAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EEEEEEEcccCc---chhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 667777887 44 34677888888888888653 23579999988765 4567788887777653
No 285
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=32.71 E-value=6.5e+02 Score=27.22 Aligned_cols=104 Identities=20% Similarity=0.169 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHH-
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGL- 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l- 183 (311)
|+-|-++|++.....+.+-++|.|-+... .-.+.+..-+++.-+++ -+.++.++-|++.. .....+++
T Consensus 97 ~~kL~~aI~~~~~~~~P~~I~V~tTC~~e---lIGDDi~~v~~~~~~~~---~~pvi~v~tpGF~gs~~~G~~~a~~al~ 170 (917)
T PRK14477 97 EKKLYRAILELAERYQPKAVFVYATCVTA---LTGDDVEAVCKAAAEKV---GIPVIPVNTPGFIGDKNIGNRLAGEALL 170 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchHH---HhccCHHHHHHHHHHhh---CCcEEEEECCCccCchhhHHHHHHHHHH
Confidence 78888888765443324567777766421 22223333333332333 36789999988733 12222222
Q ss_pred HHHHH--------cCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 184 GDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 184 ~~l~~--------~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
+.+.. .+.|.-||-.|+. ..+.++.+..+..|+++.
T Consensus 171 ~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v~ 214 (917)
T PRK14477 171 KHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRVL 214 (917)
T ss_pred HHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeEE
Confidence 33332 3678888876664 344555555677777643
No 286
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.66 E-value=1.3e+02 Score=26.17 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeE
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+.+.....+ +.|-+-|+..|.+= +. ..+..+.+++++++..=-.||..+. +.++++++++. |-.|.+
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit---~~----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEIT---LR----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEe---CC----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 444444333 34445565544432 22 2245666677766543356888776 77888777554 334443
Q ss_pred eeecCCccccCccccChhhHHHhcCceEEE
Q 021542 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 222 ~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
+|.. ..+++++|+++||.++.
T Consensus 82 -----SP~~----~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 -----SPGT----TQELLAAANDSDVPLLP 102 (201)
T ss_pred -----CCCC----CHHHHHHHHHcCCCEeC
Confidence 2221 22589999999988873
No 287
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=32.44 E-value=2.1e+02 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-|++. ....+..+++.+.++++.+. ....|++++-.+.. .+..++-+.|..|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 677888888753 34778888888888887652 23459998887764 4567777777777765
No 288
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=32.12 E-value=4e+02 Score=24.36 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCC---CchH-------HHHHHHHHhccCCCCCCcEEEEecCCCCC--CCC
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGA---INSE-------TLLGRFIKERKQRDPEVEVTVATKFAALP--WRL 142 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~---~~sE-------~~lg~aL~~~~~~~~R~~~~i~tK~~~~~--~~~ 142 (311)
+...++|++-.+.||+||=.+..-=+-.+ ++ ..-+ +.+|+..+. ..+-++..-+... ...
T Consensus 45 ~~l~~~L~~n~~~~I~~yRisS~liP~as-hp~~~~~~~~~~~~~l~~iG~~~~~-------~~iRls~HP~qf~vLnSp 116 (275)
T PF03851_consen 45 EDLLRILEYNIAHGIRFYRISSDLIPLAS-HPEVGWDWEEEFAEELAEIGDLAKE-------NGIRLSMHPDQFTVLNSP 116 (275)
T ss_dssp HHHHHHHHHHHHTT--EEE--TTSSTTTT-STT--S-HHHHHHHHHHHHHHHHHH-------TT-EEEE---TT--TT-S
T ss_pred HHHHHHHHHHHHcCCCEEecCcccCCCCC-CcccccchHHHHHHHHHHHHHHHHH-------cCCeEEecCCcceeCCCC
Confidence 56778899999999999975543211111 00 0112 234555554 4566777765421 124
Q ss_pred CHHHHHHHHHH------HHHHhCCCcc--ceEEeecCCCCCc-HH----HHHHHHHHHHcCccceEeecCC-cHHHHHHH
Q 021542 143 GRQSVLAALKD------SLFRLGLSSV--ELYQLHWAGIWGN-EG----FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNA 208 (311)
Q Consensus 143 ~~~~i~~~l~~------sL~~L~~d~i--Dl~~lh~p~~~~~-~~----~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~ 208 (311)
+++-+..+|++ .|+.||.+.- ..+.||--..++. ++ +.+.+..|=+ ..-+.+=+-|. ....+.++
T Consensus 117 ~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~RF~~~~~~L~~-~ir~rL~lENDd~~yt~~d~ 195 (275)
T PF03851_consen 117 REEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALERFIENFKRLPE-SIRKRLTLENDDKTYTVEDV 195 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHHHHHHHHT--H-HHHTTEEEE--SSS--HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHHHHHHHhhCCH-hhhhcEEEecCCCccCHHHH
Confidence 56667777664 4777998877 8999998655432 22 2222222211 11233445554 34557777
Q ss_pred HHHHHhcCCCeeEeeec
Q 021542 209 YEKLKKRGIPLASNQVN 225 (311)
Q Consensus 209 ~~~~~~~~~~~~~~q~~ 225 (311)
+.++++.|+|+++.-..
T Consensus 196 L~ic~~~giP~VfD~hH 212 (275)
T PF03851_consen 196 LPICEKLGIPMVFDYHH 212 (275)
T ss_dssp HHHHHHHT--EEEEHHH
T ss_pred HHHHHHhCCCEEEEhHH
Confidence 77799999886664333
No 289
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.07 E-value=1.1e+02 Score=20.82 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCccceEeecCCc-HHHHHHHHHHHHhcCC
Q 021542 179 FIDGLGDAVEQGLVKAVGVSNYS-EKRLRNAYEKLKKRGI 217 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvs~~~-~~~~~~~~~~~~~~~~ 217 (311)
.-+.++.++++| +..+|+++++ .....++.+.++..++
T Consensus 17 ~~~~~~~a~~~g-~~~v~iTDh~~~~~~~~~~~~~~~~gi 55 (67)
T smart00481 17 PEELVKRAKELG-LKAIAITDHGNLFGAVEFYKAAKKAGI 55 (67)
T ss_pred HHHHHHHHHHcC-CCEEEEeeCCcccCHHHHHHHHHHcCC
Confidence 334555566666 7889999886 3333344343444443
No 290
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=31.88 E-value=4.3e+02 Score=24.72 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=60.4
Q ss_pred hhHHHHHHHHH-------HHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCH
Q 021542 72 RKMKAAKAAFD-------TSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGR 144 (311)
Q Consensus 72 ~~~~~a~~~l~-------~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~ 144 (311)
.+.++..++++ .|.++|+..+|---..|. ++.++|...... |.+=| .+. .....
T Consensus 131 mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGy-----------Ll~qFlsp~~N~--RtD~y----GGs--lenR~ 191 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGH-----------LIDQFLSPLTNR--RTDEY----GGS--LENRM 191 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch-----------HHHHhhCCCcCC--CCCcC----CCC--HHHHh
Confidence 44555555544 456789999986332222 677888654321 32211 111 11234
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC----CCcHHHHHHHHHHHHcCccceEeecC
Q 021542 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSN 199 (311)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~G~ir~iGvs~ 199 (311)
..+.+-++...+..+.+.+=-+=|-..+. .+.++.++.+..|.+.|.+.+|-||.
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 55666666666777754321122322222 34577888888888888777777764
No 291
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=31.86 E-value=1.9e+02 Score=23.16 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 126 R~~~~i~tK-~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
|=-+.|+-| ++ ....+..|++.+.++.+... ..-.|++++..+.. .+..++.+.|..|.+.
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 566777777 54 34778888888888887653 24589999998765 4566677776666544
No 292
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=31.81 E-value=4.9e+02 Score=25.34 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCe
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~ 219 (311)
.+.+.+.+...|++..+ |=+|++-+|-- -..+.++.++++| |..|+.+-...-+...+..
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG------i~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~-------- 197 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG------VTRETLERLKKSG--RIMGIVSRGGSFLAAWMLH-------- 197 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc------hhHHHHHHHHhcC--CccCeecCCHHHHHHHHHH--------
Confidence 35778888888887766 46899999975 2567888899998 5567666655544444322
Q ss_pred eEeeecCCccccCccccChhhHHHhcCceEEEcccccccc
Q 021542 220 ASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGA 259 (311)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~ 259 (311)
...=||+...-+ .+++.|+++++.+- |+-|+
T Consensus 198 ---n~~ENPlye~fD--~lLeI~~~yDVtlS----LGDgl 228 (431)
T PRK13352 198 ---NNKENPLYEHFD--YLLEILKEYDVTLS----LGDGL 228 (431)
T ss_pred ---cCCcCchHHHHH--HHHHHHHHhCeeee----ccCCc
Confidence 113355555433 48999999998773 45554
No 293
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=31.65 E-value=4.2e+02 Score=25.67 Aligned_cols=54 Identities=17% Similarity=-0.002 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCccceEe
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVG 196 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~iG 196 (311)
.+.+.+.+.+.+.+..... ..+-+.+-.... .-...+.+.++.+++.|.--.|+
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~ 108 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEe
Confidence 4455555555555544322 134444444422 33445555566666655544554
No 294
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.54 E-value=1.8e+02 Score=25.77 Aligned_cols=136 Identities=18% Similarity=0.153 Sum_probs=82.0
Q ss_pred eeecCCCCccccccee--cccccCCCCCCCCCcCChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHH
Q 021542 38 KVKLGGSDLKVTKLGV--GAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (311)
Q Consensus 38 ~r~lg~tg~~vs~lgl--G~~~~g~~~~~~~~~~~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~ 115 (311)
.++||. |+.++.|.+ |-..-|. .--+.+++.=++..|.+.-= |- +|.-+-.
T Consensus 18 DkrLGG-GiP~GsL~lIEGd~~tGK-------------SvLsqr~~YG~L~~g~~v~y----vs---------Te~T~re 70 (235)
T COG2874 18 DKRLGG-GIPVGSLILIEGDNGTGK-------------SVLSQRFAYGFLMNGYRVTY----VS---------TELTVRE 70 (235)
T ss_pred HhhccC-CCccCeEEEEECCCCccH-------------HHHHHHHHHHHHhCCceEEE----EE---------echhHHH
Confidence 467887 888887653 3332221 25566677777888887441 21 2666666
Q ss_pred HHHhccCCC-CCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CC----cHHHHHH
Q 021542 116 FIKERKQRD-PEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WG----NEGFIDG 182 (311)
Q Consensus 116 aL~~~~~~~-~R~~~~i~tK~~~~-----~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~----~~~~~~~ 182 (311)
+|+....-. +=.+.+|..++... +....+...+.-++..++....-.-|++.++.-+. .+ ..+++..
T Consensus 71 fi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~ 150 (235)
T COG2874 71 FIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTF 150 (235)
T ss_pred HHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHH
Confidence 665421000 01333333333221 23456677778888888888888899999998765 22 3356667
Q ss_pred HHHHHHcCccceEeecCC
Q 021542 183 LGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 183 l~~l~~~G~ir~iGvs~~ 200 (311)
+..|.++||+--+-+..+
T Consensus 151 ~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 151 LRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HHHHHhCCCEEEEEeChh
Confidence 777778999987766554
No 295
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=31.50 E-value=26 Score=26.70 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=26.6
Q ss_pred cCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccc
Q 021542 198 SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 198 s~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
+.++.+.+.++++. -.++++|+....+----+-..+.++|+++||.+...+.
T Consensus 3 ~~~~~~~~~~li~~-----~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-----GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHT-----TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHc-----CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 34556666666543 23555555543331111111367777777777777665
No 296
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=31.36 E-value=3.6e+02 Score=23.65 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH-H
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL-A 149 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~-~ 149 (311)
..++++..++++.|.+.|+.-+=..+.| -....+.|++ ..+-|+|=++.. .....-..+ .
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP-~G~~~~~~K~~ 78 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSY-----------VKLAAELLKG-------SDVKVCTVIGFP-LGANTTAVKAF 78 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHH-----------HHHHHHHhCC-------CCCeEEEEeccc-CCCChHHHHHH
Confidence 3567999999999999887655443333 3334444533 356666666542 333333333 3
Q ss_pred HHHHHHHHhCCCccceEEeec--CCCCCcHHHHHHHHHHHHc--Ccc-ceE-eecCCcHHHHHHHHHHHHhcCCCeeEee
Q 021542 150 ALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQ--GLV-KAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~--p~~~~~~~~~~~l~~l~~~--G~i-r~i-Gvs~~~~~~~~~~~~~~~~~~~~~~~~q 223 (311)
..++.+ ..|.+-||++ +.. +.....+.+.+.+.++++. |++ +-| =.+-.+.+++.++.+.+.+.|..|.-.-
T Consensus 79 e~~~Ai-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTs 156 (221)
T PRK00507 79 EAKDAI-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTS 156 (221)
T ss_pred HHHHHH-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 334333 4788999955 333 2223467777788887774 432 221 1223467888888888777665544433
Q ss_pred ecC
Q 021542 224 VNY 226 (311)
Q Consensus 224 ~~~ 226 (311)
..|
T Consensus 157 TG~ 159 (221)
T PRK00507 157 TGF 159 (221)
T ss_pred CCC
Confidence 344
No 297
>PRK05660 HemN family oxidoreductase; Provisional
Probab=31.35 E-value=2.5e+02 Score=26.68 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+.+++.+.++.+.+.|+..+..-=+||- ...+.+.++..++
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl---------------------------------------pgqt~~~~~~~l~ 181 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL---------------------------------------PDQSLEEALDDLR 181 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-------------cCCCCCcHHHHHHHHHHHHcCccceEeecCCc
Q 021542 153 DSLFRLGLSSVELYQLH-------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh-------------~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
..++ ++.++|.+|.+- .|+.....+.++...+.-++-=...+++|||.
T Consensus 182 ~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa 242 (378)
T PRK05660 182 QAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYA 242 (378)
T ss_pred HHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeeccccc
No 298
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.13 E-value=1.3e+02 Score=31.22 Aligned_cols=72 Identities=10% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc--CccceEeecCCcHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
.+.+.|++-++.....-.....-+|+|+..+.. .....++|.+..++ +.+.+|.++|.....+..+.+.|..
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~ 177 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ 177 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHh
Confidence 456777777776655444456678898887653 34556777776767 8899999999876666666665543
No 299
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.09 E-value=1e+02 Score=28.17 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHHhcCCCeeEeeecCCcc---------cc--CccccChhhHHHhcCceEEEcccccc
Q 021542 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI---------YR--KPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~---------~~--~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
+.+.+..++.++.|.++|+.-..+=-.+.-. .. ...-.+++++++++||+|+.|.--..
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4467888899999999998766654444311 11 11112699999999999987766554
No 300
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=31.07 E-value=4.4e+02 Score=24.57 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 74 ~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
.++..+++++..+. |++-|--+. |.+.. .+...+...++.......-..+-|.|+... .-+..+...+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~----~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRLPV----VIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCCCc----cCchhcCHHHH
Confidence 46777777776544 777554221 22211 113233344433221100135667776632 22334444555
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEee-----cCCcHHHHHHHHHHHHhcCC
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV-----SNYSEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGv-----s~~~~~~~~~~~~~~~~~~~ 217 (311)
+.|++.+...+.+.+...+. .-.+++.++++.|++.|..-.+=. -|.+.+.+.++.+.+...|+
T Consensus 214 ~~L~~~~~~~~~vsh~nh~~-Ei~~~~~~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV 282 (331)
T TIGR00238 214 ELLASFELQLMLVTHINHCN-EITEEFAEAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI 282 (331)
T ss_pred HHHHhcCCcEEEEccCCChH-hCCHHHHHHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCe
Confidence 56666665433322221121 235678888888888884321110 12345556666555443343
No 301
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=31.00 E-value=2.3e+02 Score=22.28 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC------ccceEEeecCCC--CCcHHHHHHHHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS------SVELYQLHWAGI--WGNEGFIDGLGDAV 187 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d------~iDl~~lh~p~~--~~~~~~~~~l~~l~ 187 (311)
|=-+.|+-|++. ....+..+++.+.++.+....+ -.|++++-.+.. .+..++-+.|+.|.
T Consensus 47 RlG~sVSKKv~~--kAV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNK--KAVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCC--chhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 678999999643 3577889999999999987652 578999998765 44566666666554
No 302
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=30.92 E-value=90 Score=25.00 Aligned_cols=42 Identities=2% Similarity=-0.108 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCC--cHHHHHHHHHHHHc
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAVEQ 189 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~~~~~~l~~l~~~ 189 (311)
|..+++.|+.+....+|+++++..|... ..++...++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 3555566666666667777777766622 34555666666655
No 303
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=30.66 E-value=77 Score=29.65 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCccceEeecCCcH-------HHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHh
Q 021542 179 FIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvs~~~~-------~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~ 244 (311)
+=+++++++++|.-|.+-+|-|+. ..+.++.+..++.+...++ .|++++++..+.+++....+
T Consensus 142 TEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~---~wsiIdrW~t~~glIkafA~ 211 (395)
T KOG1321|consen 142 TEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDI---KWSIIDRWPTREGLIKAFAE 211 (395)
T ss_pred cHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCC---ceEeeccccccchHHHHHHH
Confidence 446788899999999999987753 4466776667776665554 67788887766666655443
No 304
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.58 E-value=1.5e+02 Score=25.64 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~ 220 (311)
.+.+...+ +-+.|-.-|+..+. +-+.. .+.++.++.++++-.=-.||..+. +.++++++++. |-.|.
T Consensus 17 ~~~~~a~~-~~~al~~gGi~~iE---iT~~t----~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~Fi 84 (196)
T PF01081_consen 17 DDPEDAVP-IAEALIEGGIRAIE---ITLRT----PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFI 84 (196)
T ss_dssp SSGGGHHH-HHHHHHHTT--EEE---EETTS----TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEE
T ss_pred CCHHHHHH-HHHHHHHCCCCEEE---EecCC----ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEE
Confidence 34444433 33445555654333 33332 234555555554422256888886 78888888765 33554
Q ss_pred EeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 221 SNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 221 ~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
+- |. ...+++++|+++||.++.
T Consensus 85 vS-----P~----~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 85 VS-----PG----FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp EE-----SS------HHHHHHHHHHTSEEEE
T ss_pred EC-----CC----CCHHHHHHHHHcCCcccC
Confidence 42 21 122599999999999985
No 305
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.57 E-value=3.6e+02 Score=23.40 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhCCCc--cceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 144 RQSVLAALKDSLFRLGLSS--VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~--iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
...+.+.+++.+++++..+ +++++.... .+.....+.++.+..++ +..|=+...+...+...++.+.+.++|+.+
T Consensus 14 ~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~-vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 14 TAGIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLINRK-IDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred HHHHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcC-CCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 4567788888888887554 344443222 23344445555555544 566666655544444444445555565443
No 306
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=30.42 E-value=2.4e+02 Score=24.97 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccc
Q 021542 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
.++..++|..|+ +..|....- +..|...+-.+|++.|++. |.|+-....+ +++...-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~-ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPE-ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHH-HHHHHHHHcCCeEEEEEE
Confidence 445555555555 444544332 4445555555577777643 2344433322 588888888888888788
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChh
Q 021542 255 IAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 255 l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~ 305 (311)
-+.|+-- ++ .++.+. .+.++.|+.+.++||+.|+
T Consensus 144 sa~gL~~-~~---------lGr~i~-------~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGLDE-SW---------LGRRID-------REFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCCCh-HH---------hCCccC-------HHHHHHHHHHHHhcCCCcc
Confidence 7877521 00 011121 1334588999999998764
No 307
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=30.39 E-value=4.6e+02 Score=24.50 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=18.2
Q ss_pred CcCChhhHHHHHHHHHHHHHCCCC
Q 021542 67 FQWDDRKMKAAKAAFDTSLDNGIT 90 (311)
Q Consensus 67 ~~~~~~~~~~a~~~l~~Al~~Gin 90 (311)
.++.+.+.+++...|..+++.+..
T Consensus 46 ~p~~~~~~~~~~~~~~~~~~~~~~ 69 (327)
T PRK02901 46 SPFLEYDPAEAAAWLASAIEAAYG 69 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhc
Confidence 445567778888999999988663
No 308
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=30.38 E-value=1.6e+02 Score=31.28 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc--CccceEeecCCcHHHHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
...+.|+..++...........-+|+|+..+... .+.+++|.+..++ ..+++|-++|.....+..+.+.
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 4556777777665544333455788888876543 3556777666666 5899999999865544444443
No 309
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=30.31 E-value=50 Score=31.78 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=44.6
Q ss_pred eecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHh--cCceEEEcccccccccCCCCCCCCCCCCC
Q 021542 196 GVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE--LGITLIAYCPIAQGALTGKYTPQNPPTGP 273 (311)
Q Consensus 196 Gvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~--~gi~v~a~s~l~~G~L~~~~~~~~~p~~~ 273 (311)
.+...+++.+.+.++.--+.|+.|..+....|. +.++.+++ +=++++.+ ++.+++.+.....
T Consensus 133 ~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~--------~~~~~~~~~~R~~giVSR---GGs~~~~WM~~~~----- 196 (423)
T TIGR00190 133 AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLL--------EYVERLKRSGRITGIVSR---GGAILAAWMLHHH----- 196 (423)
T ss_pred ChhhCCHHHHHHHHHHHHHhCCCEEEEccchhH--------HHHHHHHhCCCccCeecC---cHHHHHHHHHHcC-----
Confidence 556667777776666544455666654433221 36666665 34455543 3334443332210
Q ss_pred CCCCcchHhHhhHHHHHHHHHHHHHhcCCChh
Q 021542 274 RGRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~ 305 (311)
-.++ .-+..+.|-+|+++|++|++
T Consensus 197 ----~ENP----lye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 197 ----KENP----LYKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred ----CcCc----hHHHHHHHHHHHHHhCeeee
Confidence 0011 12223378889999987754
No 310
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=30.22 E-value=3.1e+02 Score=26.61 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=49.9
Q ss_pred ccceEEeecCCCCCcHHHHHHHHHHHHcC--ccceEeecC-C-cHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccC
Q 021542 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN-Y-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (311)
Q Consensus 162 ~iDl~~lh~p~~~~~~~~~~~l~~l~~~G--~ir~iGvs~-~-~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (311)
..++.++..|-.... |+.+.+|.+.- .+.-+|=-. . +++.+.++++. --.+++|+..|-+-.--+..+
T Consensus 277 ~~~i~~iEdPl~~~D---~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~ 348 (425)
T TIGR01060 277 KYPIVSIEDGLSEED---WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLD 348 (425)
T ss_pred cCCcEEEEcCCCccc---HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHH
Confidence 356778887754233 55666666553 554433222 2 58888888664 246667777665443222235
Q ss_pred hhhHHHhcCceEEE
Q 021542 238 VKAACDELGITLIA 251 (311)
Q Consensus 238 ll~~~~~~gi~v~a 251 (311)
+.+.|+.+|+.++.
T Consensus 349 ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 349 AVELAKKAGYTAVI 362 (425)
T ss_pred HHHHHHHcCCcEEE
Confidence 88999999998554
No 311
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=30.20 E-value=2.1e+02 Score=21.79 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCccceEEeecCCC--CCcHHHHHHHHHHH
Q 021542 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (311)
Q Consensus 126 R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~--~d~iDl~~lh~p~~--~~~~~~~~~l~~l~ 187 (311)
|=-+.|+-|++ ....+..+++.+.++.+... ....|++++-.+.. .+..++.+.|+.|.
T Consensus 42 RlGi~vsKK~g---~AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 42 RVGLSVSKKVK---NAVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred EEEEEEecccC---chhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 66788888876 35778888888888887653 23689999988865 45677777777663
No 312
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.18 E-value=2.4e+02 Score=25.61 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecC--CC--CCcHHHHHHHHHHHH--cCcc-ceEeecCCcHHHHHHHHHHHH
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWA--GI--WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p--~~--~~~~~~~~~l~~l~~--~G~i-r~iGvs~~~~~~~~~~~~~~~ 213 (311)
..+.+.+++.++..++.+|++ -+++-.. +. ...+|-.+.++..++ .|++ -.+|++..+..+..++.+.++
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~---gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVD---GLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCC---EEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHH
Confidence 467888888888888766654 4444432 11 334444444444443 3554 466888888888888888888
Q ss_pred hcCCCeeEeeecCCccccCccccChhhH----HHhc-CceEEEccc
Q 021542 214 KRGIPLASNQVNYSLIYRKPEENGVKAA----CDEL-GITLIAYCP 254 (311)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~ll~~----~~~~-gi~v~a~s~ 254 (311)
+.|..-.++..+|..- ..+.+++++ |+.- +++++.|..
T Consensus 94 ~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 94 ELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 8886644444444322 112246554 4555 788888854
No 313
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=30.18 E-value=4.2e+02 Score=23.99 Aligned_cols=134 Identities=10% Similarity=0.097 Sum_probs=63.2
Q ss_pred ChhhHHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-----------
Q 021542 70 DDRKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA----------- 137 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~----------- 137 (311)
..+|.+...+++++.++. |++-|=..-.-|-..+-....-++++-.+.+... .|-.+++.+-...
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC---CCCeEEeccCCCCHHHHHHHHHHH
Confidence 457788888888888888 8886643333332111000111233333333322 0223333222111
Q ss_pred -----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHH
Q 021542 138 -----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (311)
Q Consensus 138 -----------~~--~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 204 (311)
.| +..+.+.+.+.+++..+... -+.+++-+.|......-..+.+.+|.+-..|..|=-|..+...
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~d~~~ 170 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDLYD 170 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 01 12345666666666666541 2566666666543333233444445544545444444455454
Q ss_pred HHHH
Q 021542 205 LRNA 208 (311)
Q Consensus 205 ~~~~ 208 (311)
+.++
T Consensus 171 ~~~~ 174 (288)
T cd00954 171 LERI 174 (288)
T ss_pred HHHH
Confidence 4444
No 314
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.09 E-value=3.1e+02 Score=26.48 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC--ccceEe-e-cCCcHHHHHHHHHHHHhcCCC
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G--~ir~iG-v-s~~~~~~~~~~~~~~~~~~~~ 218 (311)
+++...+-+.+.++. .+++++..|-.... |+.+.+|.++- .+.-+| = ..++++.+.++++. -.
T Consensus 262 t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D---~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~a 328 (408)
T cd03313 262 TSEELIDYYKELVKK-----YPIVSIEDPFDEDD---WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----KA 328 (408)
T ss_pred CHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC---HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----CC
Confidence 444444444443333 45788888754333 55555566662 443323 2 22478888888664 24
Q ss_pred eeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
.+++|+..|-+-.--+..++...|+.+|+.++.
T Consensus 329 ~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 329 ANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 666666665543222222588999999999864
No 315
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=30.05 E-value=2.3e+02 Score=21.00 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC-------CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021542 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~-------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~ 209 (311)
..-.+++++.++.+|.+-.++|+.-.+-. .+.+.+....-.+...|-++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 44567788888999999999988865522 345556777778888899988667777888877764
No 316
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=30.01 E-value=4.5e+02 Score=25.23 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.8
Q ss_pred hhhHHHhcCceEEE
Q 021542 238 VKAACDELGITLIA 251 (311)
Q Consensus 238 ll~~~~~~gi~v~a 251 (311)
+.+.|+++|+-++.
T Consensus 167 I~~la~~~gi~vIv 180 (405)
T PRK08776 167 VIEAAHKVGALTVV 180 (405)
T ss_pred HHHHHHHcCCEEEE
Confidence 44445555544443
No 317
>PRK15063 isocitrate lyase; Provisional
Probab=29.90 E-value=3e+02 Score=26.85 Aligned_cols=73 Identities=12% Similarity=-0.023 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHH--cCccceEeecC-------CcHHHHHHHHHHHHhcC
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSN-------YSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~--~G~ir~iGvs~-------~~~~~~~~~~~~~~~~~ 216 (311)
.+..+|++.+.-.. +-|+++++... .+.+++-+..+.+.. =+++-..|.|. ++.+++..+.+.+.+.|
T Consensus 263 Gld~AI~Ra~AYa~--GAD~iw~Et~~-~d~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~~eL~~~G 339 (428)
T PRK15063 263 GIEQAIARGLAYAP--YADLIWCETST-PDLEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMG 339 (428)
T ss_pred CHHHHHHHHHHHhc--CCCEEEeCCCC-CCHHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHHHHHHHcC
Confidence 36677777775544 99999998521 123333333333332 24455556442 34677777766666666
Q ss_pred CCeeE
Q 021542 217 IPLAS 221 (311)
Q Consensus 217 ~~~~~ 221 (311)
+++.+
T Consensus 340 y~~~~ 344 (428)
T PRK15063 340 YKFQF 344 (428)
T ss_pred ceEEE
Confidence 65554
No 318
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.81 E-value=2.1e+02 Score=25.04 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCC-eeEeeecCCcc
Q 021542 153 DSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP-LASNQVNYSLI 229 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~-~~~~q~~~n~~ 229 (311)
..|+-|+---.|++-|--|-+ .....++.+-.+---+. +.+.+.+.++++.++.-|.. |.+.+..||++
T Consensus 36 kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~n--------g~tl~~i~emvk~ar~~gvt~PIiLmgYYNPI 107 (268)
T KOG4175|consen 36 KILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLN--------GTTLNSIIEMVKEARPQGVTCPIILMGYYNPI 107 (268)
T ss_pred HHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHc--------CCcHHHHHHHHHHhcccCcccceeeeecccHH
Q ss_pred ccCccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 230 YRKPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 230 ~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.+..+++ .+..+++.| +.|++.-...+++.. .++.-|+++|+++
T Consensus 108 l~yG~e~-~iq~ak~aG---------anGfiivDlPpEEa~---------------------~~Rne~~k~gisl 151 (268)
T KOG4175|consen 108 LRYGVEN-YIQVAKNAG---------ANGFIIVDLPPEEAE---------------------TLRNEARKHGISL 151 (268)
T ss_pred HhhhHHH-HHHHHHhcC---------CCceEeccCChHHHH---------------------HHHHHHHhcCceE
No 319
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=29.70 E-value=2.9e+02 Score=27.67 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC---------c-cceEeecCCcHHHHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG---------L-VKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G---------~-ir~iGvs~~~~~~~~~~~~~ 211 (311)
++.+. +..+-+.|.++|+|+|++-+ |.. ..+-.++++.+.+.+ . .+-.+++....+.++.+++.
T Consensus 103 fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~--s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 103 LTPPQ-KLEIARQLAKLRVDIMEVGF---PGS--SEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEEeC---CCC--CHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 45553 45566679999999888754 432 233344444454432 1 23446777777778777664
Q ss_pred HHhcCCCeeEeeecCCccccC------ccc-----cChhhHHHhcCceEEEccccc
Q 021542 212 LKKRGIPLASNQVNYSLIYRK------PEE-----NGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 212 ~~~~~~~~~~~q~~~n~~~~~------~~~-----~~ll~~~~~~gi~v~a~s~l~ 256 (311)
....+.+-..+-+..+.++.. .++ .+.+++++++|...+.+++-.
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ED 232 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCED 232 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccc
Confidence 221122212222222222211 000 147888999988655655533
No 320
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=29.60 E-value=3.3e+02 Score=25.45 Aligned_cols=83 Identities=7% Similarity=-0.014 Sum_probs=55.4
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCcc-ceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.++.++..|-. .++.|.+|+++-.| -..|=|-++.+.+.++++. ...+++|+..+.+-.-. +.++.
T Consensus 161 ~~l~~iEqP~~-----~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~-----~a~dvi~ik~~~~GGit---~~lki 227 (327)
T PRK02901 161 GPLEYVEQPCA-----TVEELAELRRRVGVPIAADESIRRAEDPLRVARA-----GAADVAVLKVAPLGGVR---AALDI 227 (327)
T ss_pred cCceEEecCCC-----CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEEeCcchhCCHH---HHHHH
Confidence 36777777643 16777788776544 3566666777777777553 35777777766554321 37889
Q ss_pred HHhcCceEEEccccccc
Q 021542 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~G 258 (311)
|+++||.++..|.+..+
T Consensus 228 A~~~gi~v~v~s~~es~ 244 (327)
T PRK02901 228 AEQIGLPVVVSSALDTS 244 (327)
T ss_pred HHHcCCcEEEeCCcccH
Confidence 99999999877665444
No 321
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=29.58 E-value=1e+02 Score=23.95 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCC--CcHHHHHHHHHHHHcC
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQG 190 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~~~~~l~~l~~~G 190 (311)
|..+++.|+.+....+|.+++...+.. ...+....++.|...|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 355555555555566777777776652 2345555666665554
No 322
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.56 E-value=3.2e+02 Score=26.09 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=56.5
Q ss_pred eEEeecCCCCC-cHHHHHHHHHHHHc------CccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccC
Q 021542 165 LYQLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (311)
Q Consensus 165 l~~lh~p~~~~-~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (311)
++++..|-+.. .++-++.+.+|.+. +.=-..|-+.++.+.+.++++. --.+++|...+-.----+...
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 45777764321 12457777778766 3335677777888998888664 347777777665443222235
Q ss_pred hhhHHHhcCceEEEccc
Q 021542 238 VKAACDELGITLIAYCP 254 (311)
Q Consensus 238 ll~~~~~~gi~v~a~s~ 254 (311)
+.++|+.+||.+...+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 89999999999998654
No 323
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=29.50 E-value=2.1e+02 Score=30.72 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHhC--------------------------CCccceEEeecCCC----CCcHHHHHHHHHHHHc
Q 021542 140 WRLGRQSVLAALKDSLFRLG--------------------------LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~--------------------------~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~ 189 (311)
.+....++++.++..|+.++ +-...+++|..|.. .....+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 34566788888999998775 34567888888754 3357899999999999
Q ss_pred CccceEeecCCcHHHHHHHHH
Q 021542 190 GLVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 190 G~ir~iGvs~~~~~~~~~~~~ 210 (311)
|+ +|=+.+|+.++.+.+..
T Consensus 748 g~--aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCT 766 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhh
Confidence 98 88899999888888844
No 324
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=29.41 E-value=61 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCC
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGS 100 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~ 100 (311)
.+.+.+....+++.|++.||.+..|--
T Consensus 76 ~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 76 HGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred hhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 477888999999999999999998843
No 325
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.40 E-value=4.6e+02 Score=24.67 Aligned_cols=91 Identities=7% Similarity=-0.019 Sum_probs=59.3
Q ss_pred eEEeecCCC------------CCcHHHHHHHHHHHHcCc----cceEeecC--CcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~l~~l~~~G~----ir~iGvs~--~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
.+.||.++. .+.+++++++.+..++.. |+++=+.+ .+.+++.++.+.++.. ...++-++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~--~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGL--VSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcC--CcEEEEEcC
Confidence 567787764 235788999987766642 35555654 4677788888877643 456788899
Q ss_pred CccccCcc----cc---ChhhHHHhcCceEEEcccccc
Q 021542 227 SLIYRKPE----EN---GVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 227 n~~~~~~~----~~---~ll~~~~~~gi~v~a~s~l~~ 257 (311)
|++..... .. ...+..+++|+.+......+.
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~ 321 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGR 321 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 98763221 11 244567778999988766553
No 326
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=29.39 E-value=3e+02 Score=22.38 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=30.9
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.+++..+..+..++..++.-... ...+.....+...+.-+.++++|+++++..
T Consensus 96 ~~i~~i~~~~~~vil~~~~~~~~---------------~~~~~~~~~~~~~~~n~~l~~~a~~~~v~~ 148 (185)
T cd01832 96 EAVRRLRAAGARVVVFTIPDPAV---------------LEPFRRRVRARLAAYNAVIRAVAARYGAVH 148 (185)
T ss_pred HHHHHHHhCCCEEEEecCCCccc---------------cchhHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 47777887888888777654300 011111122334445567889999988653
No 327
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.38 E-value=94 Score=24.83 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCC-cEEEEecCC-CCCCCCCHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEV-EVTVATKFA-ALPWRLGRQSVLAAL 151 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~-~~~i~tK~~-~~~~~~~~~~i~~~l 151 (311)
-+++.+++..+++.|-+.| .+|+|.| +..++.+..++........++. .+.+.+... ....+...+ ..-.
T Consensus 21 i~~aa~~i~~~~~~gg~i~----~~G~G~S--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~ 92 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIF----VCGNGHS--AAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYD--EGFA 92 (138)
T ss_dssp HHHHHHHHHHHHHTT--EE----EEESTHH--HHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGG--GTHH
T ss_pred HHHHHHHHHHHHHCCCEEE----EEcCchh--hhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchh--hHHH
Confidence 4788889999999999988 6788754 1234556666655443221111 111111100 000001111 1111
Q ss_pred HHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeec
Q 021542 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs 198 (311)
+..++......=|++++-...- ...-++++++..++.|. +-||++
T Consensus 93 ~~~~~~~~~~~gDvli~iS~SG-~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 93 RQLLALYDIRPGDVLIVISNSG-NSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHHHTT--TT-EEEEEESSS--SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCC-CCHHHHHHHHHHHHCCC-EEEEEe
Confidence 2222333445667777766532 34567777788887773 334443
No 328
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.93 E-value=4.9e+02 Score=24.44 Aligned_cols=70 Identities=11% Similarity=-0.079 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHH
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~ 210 (311)
..++.++..+..+-+.+.++++.|=|=.+-.... .+..+++++.++|+++|..-. =+++-++...+++.+
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~ 216 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLED 216 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHh
Confidence 3477777777778888888988877666654333 568899999999999997653 356666676666654
No 329
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.86 E-value=5e+02 Score=24.49 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCC--------C----CCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSR--------A----SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP 139 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g--------~----~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~ 139 (311)
++.+.-.++.++|-+.|+-+|=|--.+..- . .++-.+...+|-...+ .. +.++++|=+
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~-~~-----kPiIlSTGm---- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK-KG-----KPIILSTGM---- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh-cC-----CCEEEEccc----
Confidence 446778889999999999998664443210 0 0000011233322222 21 567777766
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCC--CcHH-HHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021542 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEG-FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 140 ~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~--~~~~-~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
.+-+++.++++...++-.. |+.+||=...+ +.++ -+..|..|++.= ---||+|.|+...+.-+..+
T Consensus 157 --a~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 --ATIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred --ccHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 5567788888766665443 99999965442 2332 244555554442 35699999987765555544
No 330
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=28.84 E-value=5.4e+02 Score=24.84 Aligned_cols=135 Identities=12% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHCCCCe-EECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--------cCCCCCCCCCHH
Q 021542 75 KAAKAAFDTSLDNGITF-FDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--------KFAALPWRLGRQ 145 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~-~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~t--------K~~~~~~~~~~~ 145 (311)
++=.+=+..|.+.|... .|.+. .|+ -.-+-+++-+.. .+=|.| |......+.+.+
T Consensus 78 ~~EveK~~~A~~~GADtvMDLSt-Ggd---------l~eiR~~ii~~s------~vPvGTVPIYqA~~~~~~~~~~~t~d 141 (432)
T COG0422 78 DEEVEKAVWAIKWGADTVMDLST-GGD---------LHEIREWIIRNS------PVPVGTVPIYQALEEVNGKVEDLTED 141 (432)
T ss_pred HHHHHHHHHHHHhCcceeEeccc-CCC---------HHHHHHHHHhcC------CCCcCCchHHHHHHHHhcchhhCCHH
Confidence 44445578899999654 46543 355 455555543321 111111 000001356778
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
.++..+++..+ +-+|++-||-- -.++.++.+++.| |-.|+.+-...-+....-. ...
T Consensus 142 ~~~~~v~~qa~----~GVdfmTIHaG------V~~~~~~~~~~~~--R~~giVSRGGsi~a~Wml~-----------~~~ 198 (432)
T COG0422 142 DFFDTVEKQAE----QGVDFMTIHAG------VLLEYVPRTKRSG--RVTGIVSRGGSIMAAWMLH-----------NHK 198 (432)
T ss_pred HHHHHHHHHHH----hCCcEEEeehh------hhHHHHHHHHhcC--ceeeeeccchHHHHHHHHH-----------cCC
Confidence 88888777766 45889999974 3678889999999 5566666554444433211 113
Q ss_pred CCccccCccccChhhHHHhcCceEE
Q 021542 226 YSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 226 ~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
=|++..+-+ ++++.|+++++.+-
T Consensus 199 ENply~~fd--~lleI~k~yDvtlS 221 (432)
T COG0422 199 ENPLYEHFD--ELLEIFKEYDVTLS 221 (432)
T ss_pred cCchhhhHH--HHHHHHHHhCeeee
Confidence 355554433 58999999988763
No 331
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=28.82 E-value=3.2e+02 Score=23.94 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred CCeeEeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
..+.+.=-+||++++.... ++.+..++.|+.++..
T Consensus 184 ~~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 184 PAIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred ceEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 3567777789998887655 5999999999999864
No 332
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=28.72 E-value=4.1e+02 Score=23.49 Aligned_cols=168 Identities=16% Similarity=0.176 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCC-CCC----chHHHHHHHHHhc---cCCC-CCCcEEEEecCCCCCCCCCHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASF-GAI----NSETLLGRFIKER---KQRD-PEVEVTVATKFAALPWRLGRQ 145 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~-~~~----~sE~~lg~aL~~~---~~~~-~R~~~~i~tK~~~~~~~~~~~ 145 (311)
+...+++++|.+.|+..+=-+++......+ ... .+..-+-+.++.. .... .+=+|++..-+.. -+
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~~-----~~- 88 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVDY-----IP- 88 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEecc-----cc-
Confidence 556789999999999987555553210000 000 0112222222211 1000 0123343333322 12
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC----C--------------CcHHH----HHHHHHHHHcC----ccceEeec-
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGI----W--------------GNEGF----IDGLGDAVEQG----LVKAVGVS- 198 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~----~--------------~~~~~----~~~l~~l~~~G----~ir~iGvs- 198 (311)
.....+++.|++.+.||+ +..+|+... . +.+++ .+.+.++.+.. .+.++.+-
T Consensus 89 ~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~i~~~~~~dvlgH~Dli~ 167 (253)
T TIGR01856 89 GFEDFTKDFLDEYGLDFV-IGSVHFLGGIPIDFDAEEFNEGLVSFYGNLEQAQRDYFESVYDSIQALFKPLVIGHIDLVQ 167 (253)
T ss_pred chHHHHHHHHHHCCCCeE-EEEEEeecCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCcccHhHHH
Confidence 233556777888888888 788897541 1 11222 22444555542 12233221
Q ss_pred ---C--------Cc--HHHHHHHHHHHHhcCCCeeEeeecCC--ccccCccccChhhHHHhcCceEE
Q 021542 199 ---N--------YS--EKRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 199 ---~--------~~--~~~~~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
. +. .+.++++++.+.+.|..+.+|-..+. .-+.-+.. .+++.|++.|+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~~~yP~~-~il~~~~~~g~~it 233 (253)
T TIGR01856 168 KFGPLFTDVSSFSDEVYELLQRILKLVASQGKALEFNTSGLRKPLEEAYPSK-ELLNLAKELGIPLV 233 (253)
T ss_pred HhCccccccccccHHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCCCCCCCH-HHHHHHHHcCCCEE
Confidence 1 11 13467777777777776766643321 11111222 48999999998754
No 333
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=28.70 E-value=2.9e+02 Score=24.97 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHHHH--CCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021542 71 DRKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~--~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (311)
+.++++..++++.|.+ .|+.-+=..+.| -....+.|++.. -.++-|+|=+++.....+.+.-.
T Consensus 22 ~~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----------v~~a~~~L~~~~----~~~vkv~tVigFP~G~~~t~~K~ 86 (257)
T PRK05283 22 DDTDEKVIALCHQAKTPVGNTAAICIYPRF-----------IPIARKTLREQG----TPEIRIATVTNFPHGNDDIDIAL 86 (257)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeEEEECHHH-----------HHHHHHHhcccC----CCCCeEEEEecCCCCCCcHHHHH
Confidence 4567999999999998 466554433333 445555565321 01466777777543445555556
Q ss_pred HHHHHHHHHhCCCccceEEeecC-CCCCcHHHHHHHHHHHHc---Cc-cceEeecC-CcHHH-HHHHHHHHHhcCCCeeE
Q 021542 149 AALKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ---GL-VKAVGVSN-YSEKR-LRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p-~~~~~~~~~~~l~~l~~~---G~-ir~iGvs~-~~~~~-~~~~~~~~~~~~~~~~~ 221 (311)
...+..++ .|.|.||++.=-.. -.-..+.+.+.+.+.++. |+ ++-|==+. .+.++ +..+.+.+...|..|.=
T Consensus 87 ~Ea~~Ai~-~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVK 165 (257)
T PRK05283 87 AETRAAIA-YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIK 165 (257)
T ss_pred HHHHHHHH-cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEE
Confidence 66666666 49999998753221 112334455555555542 34 33332222 35453 77777776666555444
Q ss_pred eeecCCc
Q 021542 222 NQVNYSL 228 (311)
Q Consensus 222 ~q~~~n~ 228 (311)
--..|..
T Consensus 166 TSTGf~~ 172 (257)
T PRK05283 166 TSTGKVP 172 (257)
T ss_pred cCCCCCC
Confidence 4445543
No 334
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=28.38 E-value=1.1e+02 Score=23.46 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021542 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
+-.+.+..+...++-++|+=.+-..|+....-..+.++..+++|+ ++-+++-+ +++..+.+.
T Consensus 28 lw~~r~~~~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~--~~~L~~~p-~~L~tLa~L 89 (99)
T COG3113 28 LWSQREAQLKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN--AVTLTGVP-EQLRTLAEL 89 (99)
T ss_pred HHHHHHHHccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCC--eeEEecCc-HHHHHHHHH
Confidence 455666667777888999999988888778888999999999997 55555543 777777654
No 335
>PRK05826 pyruvate kinase; Provisional
Probab=28.09 E-value=6e+02 Score=25.13 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~ 157 (311)
.+.++.+++.|+.++=.+-...... -+.+-+.+.... .+++.|..|+ -+++.+ +.+++.++.
T Consensus 176 ~~~i~~ald~g~d~I~~sfV~saed-------v~~l~~~l~~~~----~~~~~iiakI------Et~eav-~nldeI~~~ 237 (465)
T PRK05826 176 KADIKFAAEQGVDYIAVSFVRSAED-------VEEARRLLREAG----CPHAKIIAKI------ERAEAV-DNIDEIIEA 237 (465)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHH-------HHHHHHHHHHcC----CcCceEEEEE------cCHHHH-HhHHHHHHH
Confidence 3457889999999986543332210 122245555543 2379999999 444444 577777776
Q ss_pred hCCCccceEEeecCCC---CCcHHHHHH----HHHHHHcCcc
Q 021542 158 LGLSSVELYQLHWAGI---WGNEGFIDG----LGDAVEQGLV 192 (311)
Q Consensus 158 L~~d~iDl~~lh~p~~---~~~~~~~~~----l~~l~~~G~i 192 (311)
+|.+++-.-|- .+.+++... ++.+++.||.
T Consensus 238 -----~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKp 274 (465)
T PRK05826 238 -----SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKP 274 (465)
T ss_pred -----cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCC
Confidence 79999876654 334443333 3445666764
No 336
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.05 E-value=4.9e+02 Score=24.39 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=10.4
Q ss_pred HHHHHHCCCCeEEC
Q 021542 81 FDTSLDNGITFFDT 94 (311)
Q Consensus 81 l~~Al~~Gin~~Dt 94 (311)
.+.|.++|+..++.
T Consensus 143 A~~a~~aGfDgVei 156 (353)
T cd02930 143 AALAREAGYDGVEI 156 (353)
T ss_pred HHHHHHcCCCEEEE
Confidence 34456789999986
No 337
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.82 E-value=5.3e+02 Score=24.40 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCc
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~ 96 (311)
.+.++..++++.--+.|+..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3458888888888899999999753
No 338
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.80 E-value=79 Score=30.98 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccce------------Eeec---------CC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA------------VGVS---------NY 200 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~------------iGvs---------~~ 200 (311)
++.+.|++.|+ .|-.-.+..|++|--|...-.--+..+-+|-+.|--|. .|-+ -+
T Consensus 19 ~~~~~ik~~Id----~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~Y 94 (445)
T cd06569 19 HSKETVLKLLD----QMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYY 94 (445)
T ss_pred CCHHHHHHHHH----HHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCcc
Confidence 56666666655 44445677888886654221111222333333332221 1211 25
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 021542 201 SEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (311)
+.+++++++++|+.+++.
T Consensus 95 T~~di~eiv~yA~~rgI~ 112 (445)
T cd06569 95 SRADYIEILKYAKARHIE 112 (445)
T ss_pred CHHHHHHHHHHHHHcCCE
Confidence 788899998888888865
No 339
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.70 E-value=59 Score=30.41 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeec---CCcHHHHHHHHHHHHhcCCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~~~~~~~~~~~~~~~ 218 (311)
++.+.|++.|+ .+... .+..|++|--|...-.-.+...-+|.+.|.-+..|-+ -++.+++++++++|+..|+.
T Consensus 15 ~~~~~lk~~id-~ma~~---KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 15 FTVAEVKRYID-LLALY---KLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred cCHHHHHHHHH-HHHHh---CCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 56666766664 34444 5777888876542211111222334444432221111 25788899999888888874
No 340
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=27.59 E-value=1.9e+02 Score=25.63 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHc-CccceEeecCC-----cHHHHHHHHHHHHhcCCCeeEeeecCCccccCcc-----ccChhhHHHh
Q 021542 176 NEGFIDGLGDAVEQ-GLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-----ENGVKAACDE 244 (311)
Q Consensus 176 ~~~~~~~l~~l~~~-G~ir~iGvs~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-----~~~ll~~~~~ 244 (311)
++.+.++++.+++. |++.-+|+.+. ..+++..+++.+++.|++.+++..-.-=-+..+. -.++.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 44555666666654 55667776553 3467777777777777654443322111111110 0146677777
Q ss_pred cCceEEE
Q 021542 245 LGITLIA 251 (311)
Q Consensus 245 ~gi~v~a 251 (311)
.|++-||
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 7776555
No 341
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.57 E-value=2.1e+02 Score=26.14 Aligned_cols=118 Identities=14% Similarity=0.033 Sum_probs=58.4
Q ss_pred HHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc---cChhhHHHhcCceEEEccccc
Q 021542 181 DGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvs~-~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~ll~~~~~~gi~v~a~s~l~ 256 (311)
+-|...++.| -.+|--| ++.+.+..+++.+++.+ .|.++|+.-+-+.....+ .-+..++++..|+|...-=
T Consensus 8 ~~l~~A~~~~--yaV~Afn~~n~e~~~avi~aAe~~~-~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlD-- 82 (281)
T PRK06806 8 ELLKKANQEN--YGVGAFSVANMEMVMGAIKAAEELN-SPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFD-- 82 (281)
T ss_pred HHHHHHHHCC--ceEEEEEeCCHHHHHHHHHHHHHhC-CCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECC--
Confidence 4455566666 3444444 36788888887777766 466666643333221111 1244567777777654321
Q ss_pred ccccCCCCCCCCCCCCCC--CCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 257 QGALTGKYTPQNPPTGPR--GRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 257 ~G~L~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
.|.-.. .....-..+.. +-.-+...++.+.+...++.++|+++|++.
T Consensus 83 H~~~~e-~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 83 HGMTFE-KIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CCCCHH-HHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 110000 00000000000 001112224556677778999999999874
No 342
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.49 E-value=4.2e+02 Score=23.41 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
...+...+++.++++|.+ ++++ ...........+.++.+...+ +..|-+...+.....+.++.+...++|+.++
T Consensus 14 ~~~~~~gi~~~a~~~g~~---~~~~-~~~~~~~~~~~~~l~~~~~~~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 14 SNAQVRGAKDEFAKLGIE---VVAT-TDAQFDPAKQVADIETTISQK-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe-cCCCCCHHHHHHHHHHHHHhC-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEe
Confidence 456888888889888843 3322 222234455667777777654 6766665544333344444456666766554
No 343
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.30 E-value=3.9e+02 Score=26.76 Aligned_cols=108 Identities=11% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CccceEEeecCCCCC-----cHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG-----NEGFIDGL 183 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~-d~iDl~~lh~p~~~~-----~~~~~~~l 183 (311)
++-|-++|++.....+.+=++|.|-+.. ..-.|.+..-+++.-+.... +-+++..+|-|++.+ .+.+++++
T Consensus 127 ~~~L~e~I~~~~~~y~P~~I~V~tTC~~---evIGDDi~a~i~~~~~~~~~p~~~pVi~v~TpgF~Gs~~~Gyd~a~~ai 203 (515)
T TIGR01286 127 LKNMVDGLQNCYALYKPKMIAVSTTCMA---EVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTPSFVGSHITGYDNMFKGI 203 (515)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHH---HHhhccHHHHHHHHHHhcCCCCCCceEEeeCCCCcccHHHHHHHHHHHH
Confidence 7777777766543322456777777643 12233444444444444432 246899999998843 22333333
Q ss_pred HH-HH----------HcCccceEe-ecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 184 GD-AV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 184 ~~-l~----------~~G~ir~iG-vs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
-+ +. ..++|.-|| ...+ +..+.++.++.+..|+++.+
T Consensus 204 l~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 204 LEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred HHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 22 21 136677775 3333 45566666667777776554
No 344
>PRK01060 endonuclease IV; Provisional
Probab=27.03 E-value=3e+02 Score=24.50 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=25.6
Q ss_pred eEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCC-cc--ccCc----cccChhhHHHhcCce
Q 021542 194 AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS-LI--YRKP----EENGVKAACDELGIT 248 (311)
Q Consensus 194 ~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n-~~--~~~~----~~~~ll~~~~~~gi~ 248 (311)
.+|+-+.....++++++.+.+.| ++.+|+... +. .... .-.++.+.++++|+.
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G--~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIG--ANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcC--CCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 45555443333666666555443 455555322 11 1100 001366778888887
No 345
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=27.02 E-value=3e+02 Score=28.22 Aligned_cols=76 Identities=17% Similarity=0.073 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCe
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPL 219 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~~~~~~~~~~~~~~~~ 219 (311)
.+.+.++.+ ..+|.|+|=+++.. .|...+.+.....+.+....-.+..+||- |-+++.+.++.+. ..+
T Consensus 11 t~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~l 80 (610)
T PRK13803 11 KDSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGI 80 (610)
T ss_pred CcHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCC
Confidence 344445544 35899999987654 34445555523333333322347789985 7788888888665 578
Q ss_pred eEeeecCC
Q 021542 220 ASNQVNYS 227 (311)
Q Consensus 220 ~~~q~~~n 227 (311)
+++|+.-+
T Consensus 81 d~vQLHG~ 88 (610)
T PRK13803 81 DFVQLHGA 88 (610)
T ss_pred CEEEECCC
Confidence 99998753
No 346
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=26.96 E-value=2.2e+02 Score=29.21 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCccceE----eecCCc
Q 021542 180 IDGLGDAVEQGLVKAV----GVSNYS 201 (311)
Q Consensus 180 ~~~l~~l~~~G~ir~i----Gvs~~~ 201 (311)
|+-|.+++++|+||.| |.+|..
T Consensus 413 ~~pLid~I~~G~IrGvv~ivGC~n~k 438 (613)
T cd01915 413 LKPLIDAIASGNIKGVVGIVGCNNLK 438 (613)
T ss_pred hHHHHHHHHcCCCCceEEEEeCCCCC
Confidence 5567778999999854 455543
No 347
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=26.88 E-value=5.1e+02 Score=23.92 Aligned_cols=51 Identities=10% Similarity=0.243 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHcCccceEe--e-cCCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 176 NEGFIDGLGDAVEQGLVKAVG--V-SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iG--v-s~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
.+.++++++.|++.|.--.+- + .+.+.+++.++++.+.+.|+....++..|
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 467899999999999633332 2 35688999999999888887543344333
No 348
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=26.62 E-value=4.1e+02 Score=25.47 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=20.9
Q ss_pred eecCCccccCcccc---ChhhHHHhcCceEEEccc
Q 021542 223 QVNYSLIYRKPEEN---GVKAACDELGITLIAYCP 254 (311)
Q Consensus 223 q~~~n~~~~~~~~~---~ll~~~~~~gi~v~a~s~ 254 (311)
...||.....+.++ ++.+.|+++||.+-.|-.
T Consensus 115 ~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S 149 (384)
T smart00812 115 YSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHS 149 (384)
T ss_pred CCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcC
Confidence 33566555433222 689999999999966533
No 349
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=26.32 E-value=3.7e+02 Score=25.39 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCC---CCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASF---GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~---~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL 155 (311)
+.++...++|+|.|...---.+...- +...+.+.+-++++...... =+.+-+.-=+|. ...+.+.+++.++..+
T Consensus 109 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g-~~~v~~dli~Gl--Pgqt~~~~~~tl~~~~ 185 (375)
T PRK05628 109 EFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAG-FEHVNLDLIYGT--PGESDDDWRASLDAAL 185 (375)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCcEEEEEeccC--CCCCHHHHHHHHHHHH
Confidence 45555556799988655444431110 01111333445544432110 012322222232 3478888888888655
Q ss_pred HHhCCCccceEEeec
Q 021542 156 FRLGLSSVELYQLHW 170 (311)
Q Consensus 156 ~~L~~d~iDl~~lh~ 170 (311)
+++.++|.+|.+.-
T Consensus 186 -~l~~~~i~~y~l~~ 199 (375)
T PRK05628 186 -EAGVDHVSAYALIV 199 (375)
T ss_pred -hcCCCEEEeeeeec
Confidence 59999999988763
No 350
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.22 E-value=5.5e+02 Score=24.05 Aligned_cols=179 Identities=15% Similarity=0.067 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCC---C----CCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCC------
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRA---S----FGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL------ 138 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~---~----~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~------ 138 (311)
.+.++..++++..-++|+..|+.. ||+|- + +.....++.+.+..+... +.++....--+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg--~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT--HGDGLGGSSFNYGFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCCCCCCccccCCCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCHHHHH
Confidence 345888889999889999999985 22211 1 112344666665555433 3344322211100
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC----Cc
Q 021542 139 -------------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YS 201 (311)
Q Consensus 139 -------------~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~ 201 (311)
.+....+.++..++ ..+.+|.+ +-...+... ..+.+++.+..+.+.+.| +..|.++. ..
T Consensus 95 ~a~~~gvd~iri~~~~~e~d~~~~~i~-~ak~~G~~-v~~~l~~s~-~~~~e~l~~~a~~~~~~G-a~~i~i~DT~G~~~ 170 (333)
T TIGR03217 95 AAYDAGARTVRVATHCTEADVSEQHIG-MARELGMD-TVGFLMMSH-MTPPEKLAEQAKLMESYG-ADCVYIVDSAGAML 170 (333)
T ss_pred HHHHCCCCEEEEEeccchHHHHHHHHH-HHHHcCCe-EEEEEEccc-CCCHHHHHHHHHHHHhcC-CCEEEEccCCCCCC
Confidence 00011222332222 33444532 222222221 234566666666666666 45566554 35
Q ss_pred HHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccccccCC
Q 021542 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG 262 (311)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~ 262 (311)
|+++.+++...++. .+++ +++.+|.=+...-.-.-.-.+-+.|+..+=-+-.+.|.-+|
T Consensus 171 P~~v~~~v~~l~~~-l~~~-i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aG 229 (333)
T TIGR03217 171 PDDVRDRVRALKAV-LKPE-TQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAG 229 (333)
T ss_pred HHHHHHHHHHHHHh-CCCC-ceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccccccccc
Confidence 67777766665432 1111 12222211110000001122345777777666666665554
No 351
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.13 E-value=3.6e+02 Score=25.49 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=61.1
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCC---CCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASF---GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~---~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
.+.++...+.|+|.+-.+---.+...- +...+-+-+-++++...... =+.+-+--=.|. ...+.+.+++.++..
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g-~~~v~~Dli~Gl--Pgqt~~~~~~~l~~~ 179 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHG-FSNLSIDLIYGL--PTQSLSDFIVDLHQA 179 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHHHHHHHH
Confidence 345777778899988655443331100 00011222334444332110 012222211121 346888898888887
Q ss_pred HHHhCCCccceEEeec-CCC------------CCcHH-----HHHHHHHHHHcCccceEeecCCc
Q 021542 155 LFRLGLSSVELYQLHW-AGI------------WGNEG-----FIDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~-p~~------------~~~~~-----~~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
+ .|+.++|.+|.+.- |.. .+.++ ...+.+.|.+.|. .++++|||.
T Consensus 180 ~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 180 I-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred H-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 6 48999999998863 321 01111 1224455666675 457777774
No 352
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=26.11 E-value=5.4e+02 Score=23.93 Aligned_cols=128 Identities=12% Similarity=0.096 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
..+.++..++++.+.+.|+..|.- .| |+-.=+..-.+++. .+++.. -.+.|+|-.. ..+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G-GEPll~~~~~~ii~-~~~~~g-----~~~~l~TNG~----ll~~e~~--- 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG-GEPLARPDLVELVA-HARRLG-----LYTNLITSGV----GLTEARL--- 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC-ccccccccHHHHHH-HHHHcC-----CeEEEEeCCc----cCCHHHH---
Confidence 456788999999999999887753 23 22110111122332 223221 3466777662 2443332
Q ss_pred HHHHHHHhCCCccceEEeecCCC--------C--CcHHHHHHHHHHHHcCcc--ceEeecCCcHHHHHHHHHHHHhcCCC
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~--------~--~~~~~~~~l~~l~~~G~i--r~iGvs~~~~~~~~~~~~~~~~~~~~ 218 (311)
+.|...|.+.|. +.|+.++. . ..+.+++.++.|++.|.- -.+-++..+..++.++++.+.+.+++
T Consensus 99 --~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 99 --DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred --HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 234455555432 33344332 0 135678888899988842 13345777889999999988887764
No 353
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=25.99 E-value=2.4e+02 Score=22.11 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=42.8
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CccceEEeecCCC--CCcHHHHHHHHHHHHc
Q 021542 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 125 ~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~---d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~ 189 (311)
+|=-+.|+-|+|. ...+..+++.+.++.+.+.- ..-|++++..+.. .+..++-+.|+.|.+.
T Consensus 43 ~R~G~~VsKKvG~---AV~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 43 PRVGLIIAKSVGS---AVERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred CEEEEEEeeecCc---hhHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 3788999999873 57788888888888877643 2345666577654 4566777777666554
No 354
>PRK10508 hypothetical protein; Provisional
Probab=25.85 E-value=91 Score=29.23 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~ 188 (311)
.+++.|.+.|++..+++|+|.+ +++.+. .+.++.++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~~~~~~---~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-MVNGQI---FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-EEECCC---CCHHHHHHHHHHHHH
Confidence 6789999999999999998887 333332 355666666665543
No 355
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.73 E-value=5.6e+02 Score=24.48 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=54.9
Q ss_pred EeecCCC------C------CcHHHHHHHHHHHH-cC------ccceEeecCC--cHHHHHHHHHHHHhcCCCeeEeeec
Q 021542 167 QLHWAGI------W------GNEGFIDGLGDAVE-QG------LVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVN 225 (311)
Q Consensus 167 ~lh~p~~------~------~~~~~~~~l~~l~~-~G------~ir~iGvs~~--~~~~~~~~~~~~~~~~~~~~~~q~~ 225 (311)
.||.++. . +.+++++++.+..+ .| .|+++=+.++ +.+.++++.+.++.. +..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l--~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDT--PCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcC--CceEEEec
Confidence 4898765 1 23556655554443 32 2466656654 678888888876643 45889999
Q ss_pred CCccccCccc----c---ChhhHHHhcCceEEEccccc
Q 021542 226 YSLIYRKPEE----N---GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 226 ~n~~~~~~~~----~---~ll~~~~~~gi~v~a~s~l~ 256 (311)
||++...... . .+.+..+++||.+.....-+
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 336 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRG 336 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 9987642211 1 25666778899987754443
No 356
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.70 E-value=4.5e+02 Score=22.88 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHC-----CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecC
Q 021542 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~-----Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~ 135 (311)
.++++..+.++.+++. |+|---.+..- .++..+...++.... |.-+||=++.
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T---------~~~~~m~~vl~~l~~---~gl~FvDS~T 127 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFT---------SDREAMRWVLEVLKE---RGLFFVDSRT 127 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHH---------C-HHHHHHHHHHHHH---TT-EEEE-S-
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCcccc---------CCHHHHHHHHHHHHH---cCCEEEeCCC
Confidence 4679999999999976 44432222222 338888888877653 5677775665
No 357
>PRK10060 RNase II stability modulator; Provisional
Probab=25.51 E-value=3.4e+02 Score=27.84 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHcCccceEeecCCc--HHHHHHHHHHHHhcCCCeeEeeecCCccccCccc-------cChhhHHHhcC
Q 021542 176 NEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELG 246 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvs~~~--~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~ll~~~~~~g 246 (311)
...+.+.+.+|++.| -.|.+.+|. ...+..+.. ++++.+-+.-+++..-... ..++..|++.|
T Consensus 540 ~~~~~~~l~~L~~~G--~~ialDdfGtg~ssl~~L~~------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg 611 (663)
T PRK10060 540 EELALSVIQQFSQLG--AQVHLDDFGTGYSSLSQLAR------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALN 611 (663)
T ss_pred HHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHh------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCC
Confidence 345678888899988 456666663 233444432 3677666665554331111 14789999999
Q ss_pred ceEEEccc
Q 021542 247 ITLIAYCP 254 (311)
Q Consensus 247 i~v~a~s~ 254 (311)
+.++|=+.
T Consensus 612 ~~viAeGV 619 (663)
T PRK10060 612 LQVIAEGV 619 (663)
T ss_pred CcEEEecC
Confidence 99997543
No 358
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=25.50 E-value=4.7e+02 Score=23.06 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHCCCCeEECCcccCC---CCCCCCCchHHHHHHHH---HhccCCCCCC-cEEEEecCCCCCCCCCHHHHH
Q 021542 76 AAKAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFI---KERKQRDPEV-EVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 76 ~a~~~l~~Al~~Gin~~Dta~~Yg~---g~~~~~~~sE~~lg~aL---~~~~~~~~R~-~~~i~tK~~~~~~~~~~~~i~ 148 (311)
...++++.|.+.|+..|=+.++... +.. ++.+-... +...+. ++ ++++-.-+...+. ...
T Consensus 17 ~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~~~-----~~~ 83 (237)
T COG1387 17 TPEEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDILPD-----GSL 83 (237)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEecCC-----CCc
Confidence 3455699999999999977777654 322 44433332 222221 12 2222222221111 111
Q ss_pred HHHHHHHHHhCCCccceEEeecCC--CCCcHHHHHHHHHHHHcCccceEeecCC----------cHHHHHHHHHHHHhcC
Q 021542 149 AALKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRG 216 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p~--~~~~~~~~~~l~~l~~~G~ir~iGvs~~----------~~~~~~~~~~~~~~~~ 216 (311)
...+..+..| | .=+..+|.+. ........+.+..+...+.|.-||=-+. ....+.+.++.+.+.|
T Consensus 84 d~~~~~~~~l--D-~vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 84 DFLDEILKEL--D-YVIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred ccchhhHhhc--C-EEEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC
Confidence 2222223332 2 2245668863 2456778888999999999887774443 2346777777788887
Q ss_pred CCeeEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
.-+.++-- .-... ....++..|+++|+.+.
T Consensus 161 ~aleins~---~~~~~-~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 161 KALEINSR---PGRLD-PNSEILRLARELGVKLA 190 (237)
T ss_pred cEEeecCC---cCccC-chHHHHHHHHHhCCeEE
Confidence 65555432 11111 11259999999988775
No 359
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.43 E-value=5.1e+02 Score=23.40 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC--cH-HHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh-cCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NE-GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK-RGI 217 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~--~~-~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~-~~~ 217 (311)
.+.+...+.++ .|--.-+|++-|--|-+.| .. -+-++-++..+.| .+...+.++++..+. .++
T Consensus 26 P~~~~~~~~~~----~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g---------~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 26 PDIVITKKALK----ILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQG---------INLNKILSILSEVNGEIKA 92 (263)
T ss_pred CCHHHHHHHHH----HHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCC
Confidence 44444444333 3322357788887774422 21 2223333333333 233333333333322 122
Q ss_pred CeeEeeecCCccccCccccChhhHHHhcCc
Q 021542 218 PLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi 247 (311)
|.+.+.-||++.+...+ ..++.|++.|+
T Consensus 93 -p~vlm~Y~N~i~~~G~e-~F~~~~~~aGv 120 (263)
T CHL00200 93 -PIVIFTYYNPVLHYGIN-KFIKKISQAGV 120 (263)
T ss_pred -CEEEEecccHHHHhCHH-HHHHHHHHcCC
Confidence 33466666666553222 25555555554
No 360
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=25.43 E-value=1.9e+02 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHCCCCeEE
Q 021542 75 KAAKAAFDTSLDNGITFFD 93 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~D 93 (311)
.+...+-++|.+.|+...+
T Consensus 19 ~Q~~~~~~~a~~~g~~i~~ 37 (148)
T smart00857 19 RQLEALRAYAKANGWEVVR 37 (148)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5666667777787877543
No 361
>PLN02591 tryptophan synthase
Probab=25.37 E-value=5e+02 Score=23.29 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCC
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRAS 103 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~ 103 (311)
+.+...++++...+.|++.++-.--|.++..
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~a 44 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLA 44 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcc
Confidence 4588999999999999999997777766544
No 362
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.36 E-value=3.6e+02 Score=27.59 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceE---EeecCCCCCcHHHHHHHHHHHHcCc-cce---------EeecCCcHHHHHHHHHHHHh
Q 021542 148 LAALKDSLFRLGLSSVELY---QLHWAGIWGNEGFIDGLGDAVEQGL-VKA---------VGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~---~lh~p~~~~~~~~~~~l~~l~~~G~-ir~---------iGvs~~~~~~~~~~~~~~~~ 214 (311)
...+-..|.++|.+.|+++ .++.--+...++-|+.|+.+++... ++- +|.++++.+.+++.++.+..
T Consensus 29 ~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~ 108 (593)
T PRK14040 29 MLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVK 108 (593)
T ss_pred HHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHh
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
+|+...-+=...|-+..-.. .+++++++|..+.+
T Consensus 109 ~Gid~~rifd~lnd~~~~~~---ai~~ak~~G~~~~~ 142 (593)
T PRK14040 109 NGMDVFRVFDAMNDPRNLET---ALKAVRKVGAHAQG 142 (593)
T ss_pred cCCCEEEEeeeCCcHHHHHH---HHHHHHHcCCeEEE
No 363
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=25.26 E-value=4.8e+02 Score=23.13 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
...+...+++.++++| |.++++....+ .+.....+.++.+..+| +..|-++......+...++.+.+.++|+.+
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~~~~~-~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYTGPTG-TTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEECCCC-CCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEE
Confidence 4668888999999887 44444332222 34555667788887765 777777776666666666556666666444
No 364
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=25.25 E-value=4.2e+02 Score=27.22 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccce
Q 021542 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~ 194 (311)
.+.+...+.+.+++||++ .|.+ .+-.+....+.+.+.+..|.++|.|..
T Consensus 72 ~d~~~~~fk~~l~~lgI~-~D~f-~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 72 VDEISAGFKELWKKLDIS-YDKF-IRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCC-eeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 366888899999999996 5742 221121234567888899999999863
No 365
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.22 E-value=2.1e+02 Score=28.19 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=39.8
Q ss_pred HhCCCccceEEee-cCCCCCcHHHHHHHHHHHHcCccceEeec-CCcHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 157 RLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 157 ~L~~d~iDl~~lh-~p~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
.+|.|++=+++.. .|...+.+.+-+....+. ++.+||- |-+++.+.++++. ..++++|+.-+
T Consensus 275 ~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 275 DAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred hCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 4678888876432 344444444333333332 8889987 6688888887654 57899998763
No 366
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.18 E-value=2.7e+02 Score=27.18 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+.+++.+.++.+.+.|+..+..-=+||- ...+.+.+.+.++
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~tl~ 226 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGL---------------------------------------PHQTVESFRETLD 226 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEe----------------ecCCC-CCcHHHHHHHHHHHHcCccceEeecCC
Q 021542 153 DSLFRLGLSSVELYQL----------------HWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~l----------------h~p~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~ 200 (311)
..+ +|+.++|.++.+ -.|+. ...+....+.+.|.+.|... +++++|
T Consensus 227 ~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~f 289 (453)
T PRK13347 227 KVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHF 289 (453)
T ss_pred HHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eeccce
No 367
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=25.12 E-value=2.2e+02 Score=26.13 Aligned_cols=109 Identities=12% Similarity=-0.051 Sum_probs=59.6
Q ss_pred HHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc---cChhhHHHhcCceEEEcccc-
Q 021542 181 DGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE---NGVKAACDELGITLIAYCPI- 255 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvs~-~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~---~~ll~~~~~~gi~v~a~s~l- 255 (311)
+.|...+++|. .||--| ++.+.+..+++.+++.+. |.++|..-..+.....+ .-+..++++.+|+|...-=-
T Consensus 8 ~iL~~A~~~~y--AV~AfN~~n~e~~~avi~AAee~~s-PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 84 (286)
T PRK12738 8 YLLQDAQANGY--AVPAFNIHNAETIQAILEVCSEMRS-PVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHH 84 (286)
T ss_pred HHHHHHHHCCc--eEEEEEeCCHHHHHHHHHHHHHHCC-CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 45566777763 334333 467888888887777764 66666543333211111 01344566777777643211
Q ss_pred ----------cccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 256 ----------AQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 256 ----------~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..|+ .+.+-.-+...++.+.+...++.++|..+|++.
T Consensus 85 ~~~e~i~~ai~~GF------------tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 85 ESLDDIRRKVHAGV------------RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred CCHHHHHHHHHcCC------------CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 1121 011111122235667777778999999998865
No 368
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=25.09 E-value=2.8e+02 Score=27.28 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=47.6
Q ss_pred HHHHHcCccceEeecCCcHHHHHHHHHHHHh-cCC-C-eeEeeecCCccccCccccChhhHHHhcCceEEEccc
Q 021542 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK-RGI-P-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (311)
Q Consensus 184 ~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~-~~~-~-~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~ 254 (311)
..+-+.|-+..||....+++++++.+...+. ..- + |-+|-+ .++-+...+ .++++.|.+++|.++..+.
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e-~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALE-WGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccH-HHHHHHHHHcCCCEEEecc
Confidence 3456789999999999999999988887765 222 4 666543 222222112 2488999999999886653
No 369
>PLN02775 Probable dihydrodipicolinate reductase
Probab=25.01 E-value=4.5e+02 Score=24.17 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHH
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~ 209 (311)
.+++.|..+.-+|.|++.+..- .++-+.+.++.+.+.|+--=+|.+.|+.+++.++.
T Consensus 67 dl~~~l~~~~~~~~~~VvIDFT---~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~ 123 (286)
T PLN02775 67 EREAVLSSVKAEYPNLIVVDYT---LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDV 123 (286)
T ss_pred cHHHHHHHhhccCCCEEEEECC---ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 3445555555567887777653 55677888888888998888999999888777663
No 370
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.76 E-value=2.5e+02 Score=30.01 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHc--CccceEeecCCc
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~ 201 (311)
...+.||.-.+.....--....-+|+|+..+.. ..+..++|.+..++ ..+..|.+++..
T Consensus 100 ~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-t~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 100 GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-TPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-CHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 456777775555443333345678888887753 35678888888887 889999988654
No 371
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.76 E-value=4.3e+02 Score=25.73 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=81.7
Q ss_pred HHHHHHHHHhCCCccceEEeecC--CC--CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeee
Q 021542 149 AALKDSLFRLGLSSVELYQLHWA--GI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~lh~p--~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~ 224 (311)
.-++..|+.++. .+.++.+-.- |. .+.+.-...+...+|+. -+||-++.+...+.++....+..|+...++-.
T Consensus 125 ~lv~~~l~~~~~-~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~ 201 (429)
T PF10100_consen 125 LLVKGFLNDLGP-DAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN 201 (429)
T ss_pred HHHHHHHHhcCC-CceEEEeecccccceeccCCCcceehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC
Confidence 345666777776 4666666531 11 12222334444455544 68999988888899988888888876655322
Q ss_pred cCCccccCccccChhhHHHhcCceEEEcccccccccCC----------CCCCCCCCCCCCCCCcchHhHhhHHHHHHHHH
Q 021542 225 NYSLIYRKPEENGVKAACDELGITLIAYCPIAQGALTG----------KYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIK 294 (311)
Q Consensus 225 ~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~----------~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~ 294 (311)
.=.++.+||.+....||..+-++= +|-..--|.+|.. +.....+..+-.++.
T Consensus 202 --------------pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT----~~~I~~M~~lw~Ei~ 263 (429)
T PF10100_consen 202 --------------PLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPIT----PTLIRDMVQLWKEIM 263 (429)
T ss_pred --------------hHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCC----HHHHHHHHHHHHHHH
Confidence 224678899999999999986652 2222223555542 222233444445677
Q ss_pred HHHHhcCCChh
Q 021542 295 ELGENYSKTST 305 (311)
Q Consensus 295 ~iA~~~g~s~~ 305 (311)
++-++.|+.+.
T Consensus 264 ~i~~~l~~~~~ 274 (429)
T PF10100_consen 264 EILNKLGIEPF 274 (429)
T ss_pred HHHHHcCCCcc
Confidence 77777766543
No 372
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=24.73 E-value=3.7e+02 Score=27.82 Aligned_cols=96 Identities=17% Similarity=0.061 Sum_probs=55.3
Q ss_pred eEECCcccCCCCCC-CC---CchHHHHHHHHHhccCCCCCCcEEEEecCCCC---------CCCCC----HHHHHHHHHH
Q 021542 91 FFDTAEVYGSRASF-GA---INSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLG----RQSVLAALKD 153 (311)
Q Consensus 91 ~~Dta~~Yg~g~~~-~~---~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~---------~~~~~----~~~i~~~l~~ 153 (311)
+|.|+..|.||.-- || .....++.|+++..+ .+++..+=.-.. ....+ .+.....+.+
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G-----~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRG-----HEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcC-----CeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67888888776431 11 133455556665544 344444332110 00122 3557788889
Q ss_pred HHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccc
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir 193 (311)
.++.||++ .|.+.- -.+..-.+.+.+.+.+|.++|.|-
T Consensus 80 ~~~~l~i~-~d~f~r-tt~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 80 DFAGFGIS-FDNYGS-THSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred HHHHhCCC-CCCCcc-CCcHHHHHHHHHHHHHHHHCCCEE
Confidence 99999997 574221 111123567889999999999884
No 373
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.69 E-value=5.7e+02 Score=23.75 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L 158 (311)
+.-+.|.++|+..++.--.. --++.++|...... |.+=| .+. .......+.+-|+...+.+
T Consensus 153 ~aA~ra~~aGfDgVeih~a~-----------gyLl~qFlsp~~N~--R~D~y----GGs--lenR~rf~~EiI~aIR~av 213 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAH-----------GYLLSQFLSPLTNK--RTDEY----GGS--LENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHHHHcCCCEEEEchhh-----------hhHHHHhcCCcCCC--CCccC----CCC--HHHHHHHHHHHHHHHHHHc
Confidence 33445677899988852222 23788888765322 33322 111 1234556677777777777
Q ss_pred CCCccceEEeecC----CCCCcHHHHHHHHHHHHcCccceEeecCC
Q 021542 159 GLSSVELYQLHWA----GIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 159 ~~d~iDl~~lh~p----~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 200 (311)
|-|..=.+=++.. ...+.++..+.+..|.+.| +.+|-||..
T Consensus 214 G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~G-vd~iev~~g 258 (338)
T cd04733 214 GPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAG-VDLVELSGG 258 (338)
T ss_pred CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcC-CCEEEecCC
Confidence 7442222223321 1245667778888888877 677766543
No 374
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.66 E-value=5.2e+02 Score=23.25 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=54.8
Q ss_pred HHHHHHHHC--CCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH--
Q 021542 79 AAFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS-- 154 (311)
Q Consensus 79 ~~l~~Al~~--Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s-- 154 (311)
+++++|++. |...|.....-. .+. + .+...++++. -.+++..--.. ....+.+...+.+++.
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~-~~~------~-~~~~l~~~~g-----~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~ 145 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEG-EKL------E-VVLPLVKKYN-----APVVALTMDDT-GIPKDAEDRLAVAKELVE 145 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCC-ccC------H-HHHHHHHHhC-----CCEEEEecCCC-CCCCCHHHHHHHHHHHHH
Confidence 356777776 777775433211 111 4 3345666664 45555442100 0113333333333333
Q ss_pred -HHHhCCCccceE----Eeec-CCCCCcHHHHHHHHHHHHc--CccceEeecCCc
Q 021542 155 -LFRLGLSSVELY----QLHW-AGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (311)
Q Consensus 155 -L~~L~~d~iDl~----~lh~-p~~~~~~~~~~~l~~l~~~--G~ir~iGvs~~~ 201 (311)
+...|++.=|++ ..-. .+.....++++.++.+++. |.=-.+|+||-+
T Consensus 146 ~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 146 KADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 335576532332 2211 0111245678888888887 888889999864
No 375
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=24.61 E-value=56 Score=28.15 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCc
Q 021542 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi 247 (311)
.++.|+..+-+|+|+. -++..+..+++.....+..=.+-|+-+++=-...+-..++..|+++|.
T Consensus 4 Fle~Lep~Il~~~i~~-----lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKS-----LPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 5788888999999884 466777777776554442111111111111111111247888999876
No 376
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=24.60 E-value=6.7e+02 Score=24.50 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHC-CCCeEECCcccCCCCCCCCCchHHHHHHHHH-hccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~-Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~-~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
+.+...+.+...++. +-.. +-.|+.... -..=-+.+++.+. ........++++|++=. ..+
T Consensus 105 p~~~~~~~~~~~~~~~~~~~---~~~y~~~~G--~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~------------q~a 167 (459)
T COG1167 105 PLEALRRALARVLRNYGASL---ALQYGPTAG--LPELREAIAAYLLARRGISCEPEQIVITSGA------------QQA 167 (459)
T ss_pred CHHHHHHHHHHHHhhcchhh---hhcCCCCCC--cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH------------HHH
Confidence 346666677666643 3331 123433222 0000223444444 33322224566665433 255
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC----CcHHHHHHHHHHHHhcCCCeeE----e
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLAS----N 222 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~~~~~~~~~~~~~~~~~~----~ 222 (311)
++-.++- =++.=|.+.+..|.. ..++.-+...| ++.++|.. .+++.+++. +++.++++.+ .
T Consensus 168 l~l~~~~-l~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~---~~~~~~k~~y~~P~~ 236 (459)
T COG1167 168 LDLLLRL-LLDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEA---LAQWKPKAVYVTPTF 236 (459)
T ss_pred HHHHHHH-hCCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHH---HhhcCCcEEEECCCC
Confidence 5544433 345668888888864 22333334444 56677654 345666666 3333344333 2
Q ss_pred eecCCccccCccccChhhHHHhcCceEEE
Q 021542 223 QVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 223 q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
|++.-.......+..++++|+++|+-||-
T Consensus 237 qNPtG~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 237 QNPTGVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred CCCCCCccCHHHHHHHHHHHHHcCCeEEe
Confidence 44433333333333689999999999883
No 377
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.57 E-value=3.6e+02 Score=26.73 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHHHHcCccceEeecC----CcHHHHHHHHHHHHhcC-CCeeE-eeecCCccccCccccChhhHHHhcCce
Q 021542 175 GNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRG-IPLAS-NQVNYSLIYRKPEENGVKAACDELGIT 248 (311)
Q Consensus 175 ~~~~~~~~l~~l~~~G~ir~iGvs~----~~~~~~~~~~~~~~~~~-~~~~~-~q~~~n~~~~~~~~~~ll~~~~~~gi~ 248 (311)
+.+.+++.++.|+++.-++.|-+.. .+...+.++.+...+.+ ..+.. .+...+.+.... ++++.+++.|+.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~---ell~~l~~aG~~ 299 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDA---DILHLYRRAGLV 299 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCH---HHHHHHHHhCCc
Confidence 3567788888887665566665553 24455555555443333 22222 233333332221 377777777765
Q ss_pred EEEccc
Q 021542 249 LIAYCP 254 (311)
Q Consensus 249 v~a~s~ 254 (311)
.+..+.
T Consensus 300 ~v~iGi 305 (497)
T TIGR02026 300 HISLGT 305 (497)
T ss_pred EEEEcc
Confidence 554433
No 378
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=24.51 E-value=1.9e+02 Score=21.71 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHHHHHHHH---HcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 178 GFIDGLGDAV---EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 178 ~~~~~l~~l~---~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
..+..|.++. ++..+..|||+.-+.+.+.++.+. .+.++.+
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~---~~~~~~~ 86 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE---YGLPFPV 86 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH---HTCSSEE
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhh---hcccccc
Confidence 4444444444 344689999999998878777543 3344444
No 379
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=24.50 E-value=4e+02 Score=21.84 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=27.3
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC
Q 021542 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 128 ~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G 190 (311)
-+++.+|+.. .+........+...+.++...++++.+-.-+....+++++.|.++.++|
T Consensus 138 ~iiv~nK~Dl----~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 138 VLIVLTKADK----LKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred EEEEEECccc----CCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4666777732 2322222222222233332234444444334445666676666666553
No 380
>PRK15108 biotin synthase; Provisional
Probab=24.42 E-value=3.8e+02 Score=25.18 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeec--CCCCCcHHHHHHHHHHHHcCccceEeecC--CcHHHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHW--AGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~--p~~~~~~~~~~~l~~l~~~G~ir~iGvs~--~~~~~~~~~~~ 210 (311)
.++++|.+.+.. ...+|...+- +...+ |.....+.+.+.++.+++.|. .+.+|+ .+.+.++++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 456666666554 4456777662 22322 211234556666666666553 233443 45555555533
No 381
>PF13289 SIR2_2: SIR2-like domain
Probab=24.37 E-value=1.8e+02 Score=22.67 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCC--eeEeeecCCccccCccccChhhHHHhcCceEE
Q 021542 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
...+++.+..+.....+-.||.|--+ +.+..++..+....-. .....+.. .......-++.+++||.+|
T Consensus 73 ~~~~~~~l~~~l~~~~~lfiGys~~D-~~i~~~l~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 73 NPWFPNFLRSLLRSKTLLFIGYSFND-PDIRQLLRSALENSGKSRPRHYIVIP-----DPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCC-HHHHHHHHHHHHhccCCCccEEEEEc-----CCchHHHHHHHHHcCCEEC
Confidence 34577888888888899999999554 4666666554333211 12211111 1111136778888888764
No 382
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.37 E-value=6e+02 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=11.8
Q ss_pred ChhhHHHhcCceEEEccc
Q 021542 237 GVKAACDELGITLIAYCP 254 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~ 254 (311)
++++++.+.|+..+...+
T Consensus 173 ~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 173 RIIELAVELGADRLELAN 190 (378)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 557777777777665443
No 383
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=24.34 E-value=2.7e+02 Score=25.18 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=35.2
Q ss_pred CCccceEEeecCCC----CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021542 160 LSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 160 ~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~ 208 (311)
...-|+++|.-|-. ....++.+-|.+|+++| +.|=+.+|+...+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg--~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG--KTVLMVTHDLGLVMAY 205 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCcHHhHhh
Confidence 45689999998854 33568999999999998 4556778886666555
No 384
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.24 E-value=5.6e+02 Score=23.50 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-CCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~-~~~~~~~~~i~~~l~~ 153 (311)
.-..++-....++|+|..|...+ .+.. .+.+|....+-. .+...+.+.++..+++
T Consensus 21 GIVA~Vs~~Lae~g~NI~disq~-~d~~-----------------------~~~ffm~i~~~~~~~~~~~~~~l~~~l~~ 76 (289)
T PRK13010 21 GIVAAVSGFLAEKGCYIVELTQF-DDDE-----------------------SGRFFMRVSFHAQSAEAASVDTFRQEFQP 76 (289)
T ss_pred CcHHHHHHHHHHCCCCEEecccc-cccc-----------------------cCcEEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 33445666777999999998765 2100 256665543321 1134678899999999
Q ss_pred HHHHhCCCccceEEeecCCC--------CCcHHHHHHHHHHHHcCcc--ceEe-ecCCcHHHHHHHHHHHHhcCCCeeEe
Q 021542 154 SLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KAVG-VSNYSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~--------~~~~~~~~~l~~l~~~G~i--r~iG-vs~~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
.-++|+++ +.++..+. .....-+++|-...++|.+ .-.+ +||.+. +. +.+++.|+++.++
T Consensus 77 l~~~l~l~----~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~--~~---~~A~~~gIp~~~~ 147 (289)
T PRK13010 77 VAEKFDMQ----WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPD--LQ---PLAVQHDIPFHHL 147 (289)
T ss_pred HHHHhCCe----EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChh--HH---HHHHHcCCCEEEe
Confidence 99999975 34544322 1234567777777888864 3333 466642 22 4467777776553
Q ss_pred eecCCccccCccccChhhHHHhcCceEEE
Q 021542 223 QVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 223 q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
. .+...+...+..+++.++++++.++.
T Consensus 148 ~--~~~~~~~~~~~~~~~~l~~~~~Dliv 174 (289)
T PRK13010 148 P--VTPDTKAQQEAQILDLIETSGAELVV 174 (289)
T ss_pred C--CCcccccchHHHHHHHHHHhCCCEEE
Confidence 2 22322222223478889998887754
No 385
>PRK09061 D-glutamate deacylase; Validated
Probab=24.23 E-value=5e+02 Score=25.81 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 203 KRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
....++++.++..|+++.+-..+|+
T Consensus 262 ~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 262 DRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCcc
Confidence 4444455555556666666666666
No 386
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=24.14 E-value=2.1e+02 Score=25.83 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=33.6
Q ss_pred HHHHHHHHHHH-HcCccceEeecCCcH---HHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 177 EGFIDGLGDAV-EQGLVKAVGVSNYSE---KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 177 ~~~~~~l~~l~-~~G~ir~iGvs~~~~---~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
+++++.+++++ +.-.+.-|=.+=+++ ..++++++.+++.|+ +-+-++==+++ +..++.+.|+++|+.++.+
T Consensus 72 ~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGv--dGlIipDLP~e---e~~~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 72 EKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGV--DGLIIPDLPPE---ESEELREAAKKHGLDLIPL 146 (259)
T ss_dssp HHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTE--EEEEETTSBGG---GHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCC--CEEEEcCCChH---HHHHHHHHHHHcCCeEEEE
Confidence 34566666666 444444333333332 224445544554442 11111111111 2225788899999988754
Q ss_pred cc
Q 021542 253 CP 254 (311)
Q Consensus 253 s~ 254 (311)
-+
T Consensus 147 v~ 148 (259)
T PF00290_consen 147 VA 148 (259)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 387
>TIGR00035 asp_race aspartate racemase.
Probab=24.12 E-value=3.5e+02 Score=23.55 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-------------cHHHHHHHHHHHHcCccceEeecCCcHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-------------~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~ 205 (311)
-+.+.+++-++..=.+.+.++++++.+++|+..+ ...+.+.++.|.+.| +..|-++..+...+
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 4567777777777778899999999999986511 234566677776665 79999988876654
No 388
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=24.06 E-value=2.3e+02 Score=25.86 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 179 ~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+-.+|+-.++.|.--.+=.-+.+.++++++.++++..|+++.-
T Consensus 147 l~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~~ 189 (285)
T COG1831 147 LEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPYR 189 (285)
T ss_pred HHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcce
Confidence 4456777778888777777788888888888888888875433
No 389
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.03 E-value=2.5e+02 Score=20.32 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC-ccceEeecCC-cHHHHHHHHH
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYE 210 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~-~~~~~~~~~~ 210 (311)
+.++.+.....|++++...-+ ....++.++++++.+ .++-|-+++. +.....++.+
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~--~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~ 91 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELP--DGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALR 91 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSS--SSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHH
T ss_pred HHHHHhcccCceEEEEEeeec--cccccccccccccccccccEEEecCCCCHHHHHHHHH
Confidence 334444445599999986532 234556666666666 7788888876 4455555543
No 390
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=23.96 E-value=2.9e+02 Score=26.93 Aligned_cols=114 Identities=11% Similarity=0.199 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCCeEECCcc---------cCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEV---------YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~---------Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~ 148 (311)
.+.++...++|+|.+-.+-- .+.+.+ .+.+-++++...... =+.+-+.--.+. ...+.+.++
T Consensus 151 ~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~------~~~~~~ai~~l~~~G-~~~v~~dli~Gl--Pgqt~e~~~ 221 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP------EEMIFELMNHAREAG-FTSINIDLIYGL--PKQTKESFA 221 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC------HHHHHHHHHHHHhcC-CCcEEEeEEeeC--CCCCHHHHH
Confidence 34566666679998854322 222222 333445555443210 011222222222 347888898
Q ss_pred HHHHHHHHHhCCCccceEEe-ecCCC-----------C-CcHHH----HHHHHHHHHcCccceEeecCCcH
Q 021542 149 AALKDSLFRLGLSSVELYQL-HWAGI-----------W-GNEGF----IDGLGDAVEQGLVKAVGVSNYSE 202 (311)
Q Consensus 149 ~~l~~sL~~L~~d~iDl~~l-h~p~~-----------~-~~~~~----~~~l~~l~~~G~ir~iGvs~~~~ 202 (311)
+.++..++ |+.++|.++.+ +.|.. . +.++. -.+.+.|.+.|. ..+++++|..
T Consensus 222 ~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 222 KTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred HHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 88886655 89999999877 22210 1 12222 223445556674 6689999864
No 391
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.94 E-value=2.8e+02 Score=23.15 Aligned_cols=81 Identities=10% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHH-HHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh
Q 021542 80 AFDTS-LDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL 158 (311)
Q Consensus 80 ~l~~A-l~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L 158 (311)
.|... .+.|++.......- +. +..|-++|+.... +.+++|+| .|. .....|..++++.+.+
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~---Dd------~~~I~~~l~~~~~---~~dlVItt-GG~--G~t~~D~t~ea~~~~~--- 84 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVG---DD------EDRIAEALRRASE---RADLVITT-GGL--GPTHDDLTREAVAKAF--- 84 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeC---CC------HHHHHHHHHHHHh---CCCEEEEC-CCC--CCCCCChHHHHHHHHh---
Confidence 34444 46799876543332 22 7778888876542 57899998 443 2233344445554433
Q ss_pred CCCccceEEeecCCCCCcHHHHHHHHHHHHc
Q 021542 159 GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 159 ~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~ 189 (311)
+.+ -...+++++.|++...+
T Consensus 85 ~~~-----------l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 85 GRP-----------LVLDEEALERIEARFAR 104 (170)
T ss_pred CCC-----------cccCHHHHHHHHHHHHh
Confidence 221 12456888888887754
No 392
>PRK12677 xylose isomerase; Provisional
Probab=23.92 E-value=3.2e+02 Score=26.21 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=27.9
Q ss_pred ChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcC
Q 021542 237 GVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYS 301 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g 301 (311)
..+++|++.|...+...+ |.....+... .. ....++...+.+..+.+.|+++|
T Consensus 118 r~IdlA~eLGa~~Vvv~~---G~~g~~~~~~--------~d-~~~a~~~~~eaL~~l~~~A~~~G 170 (384)
T PRK12677 118 RNIDLAAELGAKTYVMWG---GREGAEYDAA--------KD-VRAALDRYREAIDLLAAYVKDQG 170 (384)
T ss_pred HHHHHHHHhCCCEEEEee---CCCCccCccc--------CC-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 368899999997654332 2111101000 01 12234556666777888887743
No 393
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.90 E-value=5.1e+02 Score=22.98 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=32.1
Q ss_pred ChhhHHHhc-CceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 237 GVKAACDEL-GITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 237 ~ll~~~~~~-gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
++.+.++++ ++.+.+..|+..++.. ..+....+....+....++|++.|.+
T Consensus 49 ~l~~~~~~~~~~~i~~~~~~~~~~~~----------------~~~~~r~~~~~~~~~~i~~A~~lG~~ 100 (279)
T cd00019 49 KFKAIAEEGPSICLSVHAPYLINLAS----------------PDKEKREKSIERLKDEIERCEELGIR 100 (279)
T ss_pred HHHHHHHHcCCCcEEEEcCceeccCC----------------CCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 588889998 7888776665443211 11223444555566777888888765
No 394
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.87 E-value=6.1e+02 Score=23.83 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=57.2
Q ss_pred eEEeecCCC------------CCcHHHHHHHHH-HHHcCc---cceEeecC--CcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 165 LYQLHWAGI------------WGNEGFIDGLGD-AVEQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 165 l~~lh~p~~------------~~~~~~~~~l~~-l~~~G~---ir~iGvs~--~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
++-||.++. .+.+++++++.+ +.+.|+ |+++=+.+ .+.+.++++.+.++. ....++-++|
T Consensus 211 aisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~--l~~~VnLiPy 288 (342)
T PRK14454 211 AISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKG--MLCHVNLIPV 288 (342)
T ss_pred EEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEEec
Confidence 577898875 123456666654 344454 45555554 467888888877653 3466778999
Q ss_pred CccccCcccc-------ChhhHHHhcCceEEEccccc
Q 021542 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 227 n~~~~~~~~~-------~ll~~~~~~gi~v~a~s~l~ 256 (311)
|++....... .+.+..+++|+.+......+
T Consensus 289 n~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G 325 (342)
T PRK14454 289 NEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMG 325 (342)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 9976432211 35666778899988776544
No 395
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=23.87 E-value=1e+03 Score=26.32 Aligned_cols=171 Identities=11% Similarity=0.131 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHCCCCeEECCccc-CCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe----cC-CCCCCCCCHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVY-GSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT----KF-AALPWRLGRQSVL 148 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Y-g~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~t----K~-~~~~~~~~~~~i~ 148 (311)
+....+++.|-+.|+-.+=|.+.+ -... +...-+.|..... ...+.. +. ....+-.+++.+.
T Consensus 179 ~~~~~l~~la~~~~ip~Vat~dv~Y~~~~-------d~~~~~vl~~i~~-----~~~l~~~~~~~~~~~~~ylks~~Em~ 246 (1046)
T PRK05672 179 RRNARLAALAARAGVPLVATGDVHMHHRS-------RRRLQDAMTAIRA-----RRSLAEAGGWLAPNGERHLRSGAEMA 246 (1046)
T ss_pred HHHHHHHHHHHHhCCCEEEecCccccCHh-------hHHHHHHHHHHhC-----CCccccccccccCCCcCccCCHHHHH
Confidence 455668888888888888777653 3321 4444444433211 001100 00 0001224555555
Q ss_pred HHH---HHHHHH-------hCCCccceEEeecCCC-CC-cHHHHHHHHHHHHcCccceEeecCC--cHHHHHHHHHHHHh
Q 021542 149 AAL---KDSLFR-------LGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNY--SEKRLRNAYEKLKK 214 (311)
Q Consensus 149 ~~l---~~sL~~-------L~~d~iDl~~lh~p~~-~~-~~~~~~~l~~l~~~G~ir~iGvs~~--~~~~~~~~~~~~~~ 214 (311)
+.+ .+.+++ +..+ ++....|.|.. .+ ....-+.|.++..+|..+.+|-..- -.++++.=+++..+
T Consensus 247 ~~f~~~~~al~Nt~~Ia~~c~~~-l~~~~~~lP~f~~p~~~~~~~~L~~l~~~gl~~ry~~~~~~~~~~RL~~EL~vI~~ 325 (1046)
T PRK05672 247 RLFPDYPEALAETVELAERCAFD-LDLLAYEYPDEPVPAGHTPASWLRQLTEAGAARRYGPGIPPKARAQIEHELALIAE 325 (1046)
T ss_pred HHhhccHHHHHHHHHHHHhhccc-cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 443 233332 3332 44444445544 11 1233456888888888776654210 12334433343333
Q ss_pred cCCCeeEeeecCCccccCccccChhhHHHhcCceEEEc-----------------ccccccccCCCCCCCCC
Q 021542 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY-----------------CPIAQGALTGKYTPQNP 269 (311)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~-----------------s~l~~G~L~~~~~~~~~ 269 (311)
.| |.-+.--.. +++.+|+++||.+-.. -|+..|+|-.++..++.
T Consensus 326 ~g---------f~~YFLIV~--D~i~~Ak~~gi~vpGRGSaAGSLVaY~LgIT~VDPl~~~LlFERFLnpeR 386 (1046)
T PRK05672 326 LG---------YEGYFLTVH--DIVRFARSQGILCQGRGSAANSAVCYALGITEVDPVQSGLLFERFLSPER 386 (1046)
T ss_pred CC---------CCccHHHHH--HHHHHHHHCCceeCCCChHHHHHHHHHhCCCccCccccCCchhhccCCcc
Confidence 32 222221112 4899999999986222 25566666666665543
No 396
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=23.83 E-value=6.7e+02 Score=24.22 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred HHHHHHHHHh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC--ccceEEeecCCCCC-----cHHHHH
Q 021542 110 ETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS--SVELYQLHWAGIWG-----NEGFID 181 (311)
Q Consensus 110 E~~lg~aL~~-~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d--~iDl~~lh~p~~~~-----~~~~~~ 181 (311)
|+-+-+++.+ ..+..+.+=++|.|=+.. +-|-..++...+++..+ -++++.+|-|.+.. .+.+++
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~~-------e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~ 153 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCPS-------EVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLA 153 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCChH-------HhhcCCHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHH
Confidence 8888888877 322111244566665532 23334444444444433 37888888887733 233344
Q ss_pred HHHHHH-----HcCccceEeecCCcHHHHHHHHHHHHhcCCCee
Q 021542 182 GLGDAV-----EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (311)
Q Consensus 182 ~l~~l~-----~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~ 220 (311)
+|-+.. +.+.|.-+|..+ +....++.+..+..|+++.
T Consensus 154 alv~~~~~~~~~~~~VniiG~~~--~~d~~el~~lL~~~Gi~v~ 195 (427)
T PRK02842 154 ALVPFCPEAPADHPSLVLVGSLA--DVVEDQLTLEFKKLGIGVV 195 (427)
T ss_pred HHhhhcccccCCCCcEEEEEeCC--cchHHHHHHHHHHcCCeeE
Confidence 433322 236677788754 3334555555677776653
No 397
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.78 E-value=5.4e+02 Score=23.20 Aligned_cols=127 Identities=11% Similarity=0.067 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCC---chHHHHH---------HHHHhccCCCCCCcEEEEecCCCCCC
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI---NSETLLG---------RFIKERKQRDPEVEVTVATKFAALPW 140 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~---~sE~~lg---------~aL~~~~~~~~R~~~~i~tK~~~~~~ 140 (311)
+.+...++++...+.|++.++-.--|.++..-|+. .+++.+. +.+++.+.. ..-.+++.|=.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~vlm~Y~----- 100 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIVIFTYY----- 100 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecc-----
Confidence 45889999999999999999987777665543321 2222221 112222110 01112222211
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHH
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~ 211 (311)
++ -+...+++-++++.---+|-+.+|.- +.++.-+.++.+++.|.---.=++.. +.++++.+.+.
T Consensus 101 --N~-i~~~G~e~F~~~~~~aGvdgviipDL---P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 101 --NP-VLHYGINKFIKKISQAGVKGLIIPDL---PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred --cH-HHHhCHHHHHHHHHHcCCeEEEecCC---CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 11 12223344444443333677777763 44666666677777775333333333 34667676554
No 398
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.73 E-value=4.8e+02 Score=22.55 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=8.3
Q ss_pred ChhhHHHhc-CceEE
Q 021542 237 GVKAACDEL-GITLI 250 (311)
Q Consensus 237 ~ll~~~~~~-gi~v~ 250 (311)
+..+.|+++ |+.++
T Consensus 143 g~~~~~~~~~~~~~~ 157 (275)
T cd06320 143 GFTEAIKKASGIEVV 157 (275)
T ss_pred HHHHHHhhCCCcEEE
Confidence 456666666 66554
No 399
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.71 E-value=5.3e+02 Score=24.23 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=57.2
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHHcCc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecCCc
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~~G~---ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~ 228 (311)
+.||.++. .+.+++++++.++.+.|+ ++++=+. |.+.++++++.+.++ +.+..++-++||+
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~ 285 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVND 285 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCC
Confidence 66787654 246788899998887754 2343333 456788888877765 3456788899998
Q ss_pred cccCc---ccc---ChhhHH--HhcCceEEEcccccc
Q 021542 229 IYRKP---EEN---GVKAAC--DELGITLIAYCPIAQ 257 (311)
Q Consensus 229 ~~~~~---~~~---~ll~~~--~~~gi~v~a~s~l~~ 257 (311)
....- ... ...+.. +++||.+......+.
T Consensus 286 ~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 286 ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 54311 111 234455 356888877666553
No 400
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=23.69 E-value=4.8e+02 Score=22.50 Aligned_cols=109 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
++++-.+++..+++.|..++|.--.... +...-....... +.+++++..-.. ...+.+.+...++
T Consensus 73 ~~~~~~~ll~~~~~~~~d~iDiE~~~~~---------~~~~~~~~~~~~----~~~iI~S~H~f~--~tp~~~~l~~~~~ 137 (224)
T PF01487_consen 73 SEEEYLELLERAIRLGPDYIDIELDLFP---------DDLKSRLAARKG----GTKIILSYHDFE--KTPSWEELIELLE 137 (224)
T ss_dssp -HHHHHHHHHHHHHHTSSEEEEEGGCCH---------HHHHHHHHHHHT----TSEEEEEEEESS-----THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccch---------hHHHHHHHHhhC----CCeEEEEeccCC--CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeec
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs 198 (311)
+.. .+|.|.+=+.....-.. +...+++...++++.-.+.-|+++
T Consensus 138 ~~~-~~gadivKia~~~~~~~-D~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 138 EMQ-ELGADIVKIAVMANSPE-DVLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp HHH-HTT-SEEEEEEE-SSHH-HHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred HHH-hcCCCeEEEEeccCCHH-HHHHHHHHHHHHhhccCCcEEEEE
No 401
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.63 E-value=3.4e+02 Score=22.82 Aligned_cols=33 Identities=6% Similarity=-0.263 Sum_probs=14.0
Q ss_pred HhCCCccceEEeecCCCCCcHHHHHHHHHHHHc
Q 021542 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ 189 (311)
Q Consensus 157 ~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~ 189 (311)
+.|.|+|.+-....+........++.++++++.
T Consensus 22 ~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~ 54 (210)
T TIGR01163 22 EAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY 54 (210)
T ss_pred HcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc
Confidence 455555555433322211222344555555543
No 402
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.60 E-value=4e+02 Score=25.54 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCCeEECCcccCCCCCC---CCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 78 KAAFDTSLDNGITFFDTAEVYGSRASF---GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 78 ~~~l~~Al~~Gin~~Dta~~Yg~g~~~---~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
.+.++...++|+|.+-..---.+...- +...+.+-+-++++...... =+.+-+--=.|. ...+.+.+++.++..
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G-~~~v~~dlI~Gl--Pgqt~e~~~~tl~~~ 191 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAG-IENFSLDLISGL--PHQTLEDWQASLEAA 191 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC-CCeEEEEeecCC--CCCCHHHHHHHHHHH
Confidence 345666667899988655444431110 01111333334444332110 011222222221 346888888888866
Q ss_pred HHHhCCCccceEEeec-CCC------------CCc-HH---H-HHHHHHHHHcCccceEeecCCc
Q 021542 155 LFRLGLSSVELYQLHW-AGI------------WGN-EG---F-IDGLGDAVEQGLVKAVGVSNYS 201 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~-p~~------------~~~-~~---~-~~~l~~l~~~G~ir~iGvs~~~ 201 (311)
+ +|+.++|.++.+.- |.. .+. ++ . -.+.+.|.+.|. .++++|||.
T Consensus 192 ~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa 254 (400)
T PRK07379 192 I-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYA 254 (400)
T ss_pred H-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheE
Confidence 6 48999999988863 321 011 11 2 235566777786 458888885
No 403
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.53 E-value=82 Score=29.70 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~~~~~~~~~~~~~~~ 218 (311)
++.+.|++.|+ .|-.-.+..|++|--|...-.--+....+|.+.|. .+-.. ++.+++++++++|+..|+.
T Consensus 15 ~~~~~ik~~Id----~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga---~~~~~~YT~~di~eiv~yA~~rgI~ 85 (348)
T cd06562 15 LSVDSIKRTID----AMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGA---YSPSEVYTPEDVKEIVEYARLRGIR 85 (348)
T ss_pred CCHHHHHHHHH----HHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccC---cCCCceECHHHHHHHHHHHHHcCCE
Confidence 55666666664 44444567788886553111111122233444442 12222 5889999999999988875
No 404
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=23.42 E-value=5.6e+02 Score=23.21 Aligned_cols=133 Identities=10% Similarity=0.082 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHHHHH-CCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC-----------
Q 021542 70 DDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA----------- 137 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~-~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~----------- 137 (311)
..+|.+...++++..++ .|++-|=..-..|-..+--...=++++-.+.+.... |-.++..+-...
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~---~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG---KVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC---CCCEEecCCCCCHHHHHHHHHHH
Confidence 46788999999999999 999866443333321110000112233334443321 333333332111
Q ss_pred -----------CC--CCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHH
Q 021542 138 -----------LP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (311)
Q Consensus 138 -----------~~--~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 204 (311)
.| ...+.+.+.+.+++..+..+ +.+++-+.|......-..+.+.+|.+-..|..|=-|+.+..+
T Consensus 96 ~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~---lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~~~ 172 (293)
T PRK04147 96 TELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD---NPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLYQ 172 (293)
T ss_pred HHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC---CCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 01 12345666666666665532 466666666543322223344444444555555455555555
Q ss_pred HHHH
Q 021542 205 LRNA 208 (311)
Q Consensus 205 ~~~~ 208 (311)
+.++
T Consensus 173 ~~~~ 176 (293)
T PRK04147 173 LERI 176 (293)
T ss_pred HHHH
Confidence 5544
No 405
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=23.36 E-value=1.1e+02 Score=28.26 Aligned_cols=165 Identities=15% Similarity=0.247 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHCCCC-eEECCcccCCCCCCCCCchHHHHHHHHH---hccCCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin-~~Dta~~Yg~g~~~~~~~sE~~lg~aL~---~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~ 150 (311)
+...++++.|.+.|+. +||.=+.+-. +..+--+.+ ..... +..++++--.- -..+++.+...
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQaY---L~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQAY---LKRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEETT---BTTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEech---hhchHHHHHHH
Confidence 5677889999999988 5676554443 444433333 22211 34555555541 12456666666
Q ss_pred HHHHHHHhCCCccceEEee---------------cCCC--CC----cHHHHHHHHHHHHcCc-c--ceEeecCCcHHHHH
Q 021542 151 LKDSLFRLGLSSVELYQLH---------------WAGI--WG----NEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLR 206 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh---------------~p~~--~~----~~~~~~~l~~l~~~G~-i--r~iGvs~~~~~~~~ 206 (311)
++.+-++ |. .+.+=++- ++++ .. .+.....+..+..++. - -++++.+|+...+.
T Consensus 158 ~~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~ 235 (313)
T PF01619_consen 158 LELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIA 235 (313)
T ss_dssp HHHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHH
T ss_pred HHHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHH
Confidence 6655542 21 12222211 1111 11 2233445544554443 3 68999999999999
Q ss_pred HHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
.+.+.+++.++++.--+++|-.+..-.+ ++-....+.|..+.-|.|.+.
T Consensus 236 ~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G~ 284 (313)
T PF01619_consen 236 LALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYGP 284 (313)
T ss_dssp HHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEESE
T ss_pred HHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecCC
Confidence 9999888887654212222222222222 377778889999999999883
No 406
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=23.34 E-value=6.5e+02 Score=24.00 Aligned_cols=125 Identities=8% Similarity=0.076 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHCCCC-eEECCcccCCCCCCCCCchHHHHHHHHHhccCCC--CCCcEEEEecCCCC------CCCCC
Q 021542 73 KMKAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRD--PEVEVTVATKFAAL------PWRLG 143 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin-~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~--~R~~~~i~tK~~~~------~~~~~ 143 (311)
+.+....+.+++...|++ +++|...-. .+.+-++|+...... ++.-..+.-.+... ...+.
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t~~----------~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~ 144 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLITQP----------DENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHP 144 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccCCC----------HHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCC
Confidence 457888888999999998 556653322 333334444332100 01112233322110 01234
Q ss_pred HHHHHHHHHHHHHHhCC---CccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021542 144 RQSVLAALKDSLFRLGL---SSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 144 ~~~i~~~l~~sL~~L~~---d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
++.++.-=.+-+++|-- +.|-++-| .|+ .....+.++.|+++|.+-++|=|+-+.+++.++++.
T Consensus 145 ~~~i~~p~~~~~~~~~~~~~~~i~~vTl-APE---~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 145 PEYIREPDVELFKKFLCEAGGVITKVTL-APE---EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred HHHhhCcCHHHHHHHHHhcCCCEEEEEE-CCC---CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 44444322223333221 22222222 232 234567778899999999999999999999988664
No 407
>PRK13561 putative diguanylate cyclase; Provisional
Probab=23.17 E-value=1.6e+02 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCccceEeecCCcH--HHHHHHHHHHHhcCCCeeEeeecCCccccCccc----cChhhHHHhcCceEE
Q 021542 177 EGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITLI 250 (311)
Q Consensus 177 ~~~~~~l~~l~~~G~ir~iGvs~~~~--~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~~ll~~~~~~gi~v~ 250 (311)
+.+.+.+++|++.| -.|++.+|.. ..+..+... ...+++.+-+.-+++..-... ..++..|+..||.++
T Consensus 534 ~~~~~~~~~l~~~G--~~i~lddfG~g~ssl~~L~~l---~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~vi 608 (651)
T PRK13561 534 HAAVAILRPLRNAG--VRVALDDFGMGYAGLRQLQHM---KSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVI 608 (651)
T ss_pred HHHHHHHHHHHHCC--CEEEEECCCCCcccHHHHhhc---CCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEE
Confidence 46777888888888 4566666531 223333211 113566666554444332111 147889999999999
Q ss_pred Eccc
Q 021542 251 AYCP 254 (311)
Q Consensus 251 a~s~ 254 (311)
|-+.
T Consensus 609 AegV 612 (651)
T PRK13561 609 AEGV 612 (651)
T ss_pred EecC
Confidence 8543
No 408
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.12 E-value=4e+02 Score=21.36 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=51.0
Q ss_pred ccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccc-------cChhhHHHh--cCceEEEcccccccccC
Q 021542 191 LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDE--LGITLIAYCPIAQGALT 261 (311)
Q Consensus 191 ~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~ll~~~~~--~gi~v~a~s~l~~G~L~ 261 (311)
.+...|++..+...+.+-++..........+++...|=+...... ..+++.+++ .++.++..++.-.+-
T Consensus 23 ~v~n~g~~G~~~~~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~-- 100 (169)
T cd01828 23 KVANRGISGDTTRGLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGE-- 100 (169)
T ss_pred ceEecCcccccHHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCc--
Confidence 367778888776665443332212223455566666655432100 146777888 788887766654320
Q ss_pred CCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCC
Q 021542 262 GKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKT 303 (311)
Q Consensus 262 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s 303 (311)
. . ........+.-+.++++|+++++.
T Consensus 101 ------------~-~---~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 101 ------------L-K---SIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred ------------c-C---cCCHHHHHHHHHHHHHHHHHCCCE
Confidence 0 0 011123344445778888888764
No 409
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.12 E-value=2.4e+02 Score=22.96 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=52.5
Q ss_pred cceEeecCCcHHHHH-HHHHHHHhcCCCeeEeeecCCccccC------c-----cccChhhHH--HhcCceEEEcccccc
Q 021542 192 VKAVGVSNYSEKRLR-NAYEKLKKRGIPLASNQVNYSLIYRK------P-----EENGVKAAC--DELGITLIAYCPIAQ 257 (311)
Q Consensus 192 ir~iGvs~~~~~~~~-~~~~~~~~~~~~~~~~q~~~n~~~~~------~-----~~~~ll~~~--~~~gi~v~a~s~l~~ 257 (311)
|...|+++.+...+. .+............++++.-|=+... . .-..+++.+ +..+..|+..+|+..
T Consensus 36 v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~ 115 (191)
T cd01834 36 FRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAY 115 (191)
T ss_pred EEEcccCccchhhhhhhhhcccccCCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCccc
Confidence 346677777666554 22211111222345566655555432 1 001477878 566888888777654
Q ss_pred cccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 258 GALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 258 G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..... + ...............+.++++|+++++..
T Consensus 116 ~~~~~-------~-----~~~~~~~~~~~~~~n~~l~~~a~~~~~~~ 150 (191)
T cd01834 116 EANED-------P-----LPDGAEYNANLAAYADAVRELAAENGVAF 150 (191)
T ss_pred CCCCC-------C-----CCChHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence 21100 0 00112233445555567889999988653
No 410
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=23.06 E-value=2.2e+02 Score=25.12 Aligned_cols=19 Identities=26% Similarity=0.634 Sum_probs=14.7
Q ss_pred HHHHHHHCCCCeEECCccc
Q 021542 80 AFDTSLDNGITFFDTAEVY 98 (311)
Q Consensus 80 ~l~~Al~~Gin~~Dta~~Y 98 (311)
-|...|+.|||+||-=..+
T Consensus 42 ~i~~QL~~GiR~~dlr~~~ 60 (271)
T cd08557 42 SITDQLDAGVRYLDLRVAY 60 (271)
T ss_pred CHHHHHhcCceEEEEEeee
Confidence 4678899999999865444
No 411
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=23.03 E-value=5.1e+02 Score=22.59 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=29.8
Q ss_pred HHHhCCCccceEEeecCCCC--CcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHH
Q 021542 155 LFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYE 210 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~ 210 (311)
+..+| +|.+.+|..+.. ...--|+.+.++++.-.+.-|..... +++.+.++++
T Consensus 158 l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~ 213 (243)
T cd04731 158 VEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFE 213 (243)
T ss_pred HHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH
Confidence 34555 556666654431 11123566666666656666666554 5677777755
No 412
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.98 E-value=5.9e+02 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=14.6
Q ss_pred ChhhHHHhcCceEEEccccccc
Q 021542 237 GVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~l~~G 258 (311)
+.++.+++.||.+.+..-++.|
T Consensus 149 ~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 149 EVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred HHHHHHHHcCCCceeeEEecCC
Confidence 4777788888777665555543
No 413
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.93 E-value=7.5e+02 Score=24.50 Aligned_cols=155 Identities=13% Similarity=0.071 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
++-....++.|.+.||..|=..+.-.+-+ +.+..+. +.++.+.. -.+.|+-... ..++.+.+.+.+++
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~-----n~~~ai~-~ak~~G~~---~~~~i~yt~s---p~~t~~y~~~~a~~ 171 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPR-----NIQQALR-AVKKTGKE---AQLCIAYTTS---PVHTLNYYLSLVKE 171 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHH-----HHHHHHH-HHHHcCCE---EEEEEEEEeC---CcCcHHHHHHHHHH
Confidence 36677789999999999887766554411 2233332 33444311 1233333332 23566667766665
Q ss_pred HHHHhCCCccceEEeecCC-CCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH-HHhcCCCeeEeeecCCcccc
Q 021542 154 SLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK-LKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~-~~~~~~~~~~~q~~~n~~~~ 231 (311)
+..+|. |.+.|-+.- ...+.++-+-+..+++... ..||+=.|+...+.-+... +-+.| .+.+....+++-.
T Consensus 172 -l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hnt~GlA~An~laAieAG--ad~vD~ai~g~g~ 244 (468)
T PRK12581 172 -LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHATSGISQMTYLAAVEAG--ADRIDTALSPFSE 244 (468)
T ss_pred -HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCCCCccHHHHHHHHHHcC--CCEEEeeccccCC
Confidence 446775 455554432 2446666666667766544 3578877764333322222 22233 3344444444443
Q ss_pred Cc---cccChhhHHHhcCc
Q 021542 232 KP---EENGVKAACDELGI 247 (311)
Q Consensus 232 ~~---~~~~ll~~~~~~gi 247 (311)
.. .-..++.+++..|+
T Consensus 245 gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 245 GTSQPATESMYLALKEAGY 263 (468)
T ss_pred CcCChhHHHHHHHHHhcCC
Confidence 22 11235666665544
No 414
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.88 E-value=2.9e+02 Score=27.75 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=44.6
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHc-CccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
|-++-++-.. -+++++|..+++. ++|.-||..+.. ..+..+.+. .+++ +.+..|+--+ +-.+.+..
T Consensus 74 iPVv~i~~s~----~Dil~al~~a~~~~~~ia~vg~~~~~-~~~~~~~~l---l~~~--i~~~~~~~~~---e~~~~~~~ 140 (526)
T TIGR02329 74 LPVIVIKPTG----FDVMQALARARRIASSIGVVTHQDTP-PALRRFQAA---FNLD--IVQRSYVTEE---DARSCVND 140 (526)
T ss_pred CCEEEecCCh----hhHHHHHHHHHhcCCcEEEEecCccc-HHHHHHHHH---hCCc--eEEEEecCHH---HHHHHHHH
Confidence 5555555443 3788998888774 677777777664 334444222 2233 3333332211 22257888
Q ss_pred HHhcCceEEE
Q 021542 242 CDELGITLIA 251 (311)
Q Consensus 242 ~~~~gi~v~a 251 (311)
+++.|+.++.
T Consensus 141 l~~~G~~~vi 150 (526)
T TIGR02329 141 LRARGIGAVV 150 (526)
T ss_pred HHHCCCCEEE
Confidence 8999998887
No 415
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=22.86 E-value=6.9e+02 Score=24.08 Aligned_cols=107 Identities=22% Similarity=0.160 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCC-----cHHHHHHHH
Q 021542 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----NEGFIDGLG 184 (311)
Q Consensus 110 E~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~-----~~~~~~~l~ 184 (311)
|+-|-++|++..+..+.+-++|.|-+.. ..-.+.+..-+++. +++ .++++.++-|++.. .+.++++|-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEG---GAPIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhc---CCCEEEEECCCcCcccccHHHHHHHHHH
Confidence 7777788776443322356667766642 12223344444433 333 37899999988732 233444443
Q ss_pred H-HH------HcCccceEeecCC-c---HHHHHHHHHHHHhcCCCeeEee
Q 021542 185 D-AV------EQGLVKAVGVSNY-S---EKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 185 ~-l~------~~G~ir~iGvs~~-~---~~~~~~~~~~~~~~~~~~~~~q 223 (311)
+ +. +.+.|.-||..+. + ...+.++.+..+..|+++.++.
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~ 193 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILF 193 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEE
Confidence 2 22 2345888886431 2 2445555555777777765553
No 416
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.67 E-value=3.1e+02 Score=23.95 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCc---cceEeecCC-cHHHHHHHHHHHHhcCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~---ir~iGvs~~-~~~~~~~~~~~~~~~~~ 217 (311)
.+.+.... +-+.|..-|+.-+.+= +. ....++.+++++++-. =-.||..+. +.++++++++. |-
T Consensus 22 ~~~~~a~~-~~~al~~~Gi~~iEit---~~----~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA 89 (213)
T PRK06552 22 ESKEEALK-ISLAVIKGGIKAIEVT---YT----NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GA 89 (213)
T ss_pred CCHHHHHH-HHHHHHHCCCCEEEEE---CC----CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CC
Confidence 45554444 3445556676555443 22 2346677777776521 145888876 78888887654 34
Q ss_pred CeeEeeecCCccccCccccChhhHHHhcCceEEE
Q 021542 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
.|.+ +|.. ..+++++|+++||.++.
T Consensus 90 ~Fiv-----sP~~----~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 90 QFIV-----SPSF----NRETAKICNLYQIPYLP 114 (213)
T ss_pred CEEE-----CCCC----CHHHHHHHHHcCCCEEC
Confidence 5554 2222 12589999999988874
No 417
>PLN02417 dihydrodipicolinate synthase
Probab=22.63 E-value=5.7e+02 Score=23.04 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (311)
..+|.+...+.+++.++.|++-|=..-..|-..+.....=++++-.+.+... .++-|..-++ ..+.+...+
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-----~~~pvi~gv~----~~~t~~~i~ 87 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----GKIKVIGNTG----SNSTREAIH 87 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-----CCCcEEEECC----CccHHHHHH
Confidence 4688899999999999999997754444333211011111233333444332 3343333332 133333333
Q ss_pred HHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcC
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G 190 (311)
..+.. +++| .|-+++.-|.. .+.+++.+.++++.+..
T Consensus 88 ~a~~a-~~~G---adav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 88 ATEQG-FAVG---MHAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHH-HHcC---CCEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 33333 4566 45666666654 34577888888777764
No 418
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=22.63 E-value=3.5e+02 Score=23.32 Aligned_cols=107 Identities=14% Similarity=0.171 Sum_probs=52.8
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCC---CCCCC--C---HHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRL--G---RQSVLAA 150 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~---~~~~~--~---~~~i~~~ 150 (311)
+++++|++.|...+--....-. ...+.+.++++. ..+++..--+. .+... . .+.+...
T Consensus 83 ~v~~~aL~~g~~~ind~~~~~~---------~~~~~~l~a~~~-----~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~ 148 (210)
T PF00809_consen 83 EVAEAALKAGADIINDISGFED---------DPEMLPLAAEYG-----APVVLMHSDGNPKGMPETADYRLDIAEEIIEF 148 (210)
T ss_dssp HHHHHHHHHTSSEEEETTTTSS---------STTHHHHHHHHT-----SEEEEESESSETTTTTSSHHHSHSHHHHHHHH
T ss_pred HHHHHHHHcCcceEEecccccc---------cchhhhhhhcCC-----CEEEEEecccccccccccchhhhhHHHHHHHH
Confidence 3566777778886643322221 122345556554 34554444421 11111 1 2333333
Q ss_pred HHHH---HHHhCCCccceEEeecCCC----CCcHHHHHHHHHHHHc-CccceEeecC
Q 021542 151 LKDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQ-GLVKAVGVSN 199 (311)
Q Consensus 151 l~~s---L~~L~~d~iDl~~lh~p~~----~~~~~~~~~l~~l~~~-G~ir~iGvs~ 199 (311)
+++. |.+.|++.=|+++==...+ ....++++.++.+++. |....+|.|.
T Consensus 149 ~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~sr 205 (210)
T PF00809_consen 149 LEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSR 205 (210)
T ss_dssp HHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETT
T ss_pred HHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3332 3336876555544222222 1144778888888888 8888888775
No 419
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=22.61 E-value=3.4e+02 Score=24.83 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeec
Q 021542 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (311)
Q Consensus 151 l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs 198 (311)
=...|+.||+ -.|.+|..|......+++.-.+++.-++=|-|++|
T Consensus 194 E~~iLk~lgI---~~fsm~~Vdk~GI~~Vme~a~~~v~~~~~rpihlS 238 (318)
T KOG2965|consen 194 EHAILKELGI---AAFSMHEVDKYGIQKVMEMAMELVNPGTRRPIHLS 238 (318)
T ss_pred HHHHHHhcCc---ceEeehhhHhhhHHHHHHHHHHHhcCCCccceeEE
Confidence 3466888884 56889999988999999988889988887878876
No 420
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=22.56 E-value=2.9e+02 Score=23.91 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 200 (311)
.+++.+.+.+ +.+ .+|++|||.... .+.++.|.+...-..++.+.+.+.
T Consensus 64 ~~~~~i~~~~----~~~---~~d~vQLHg~e~---~~~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 64 ASDEEIDEIV----ETV---PLDLLQLHGDET---PEFCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CCHHHHHHHH----Hhc---CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCCH
Confidence 4555444443 344 578999998632 233344333222356788888754
No 421
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.53 E-value=1.3e+02 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=11.6
Q ss_pred ChhhHHHhcCceEEE
Q 021542 237 GVKAACDELGITLIA 251 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a 251 (311)
+++++|+++||.++.
T Consensus 93 ~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 93 ELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 588888888888875
No 422
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.47 E-value=2.2e+02 Score=25.36 Aligned_cols=86 Identities=9% Similarity=-0.055 Sum_probs=51.3
Q ss_pred cceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHH
Q 021542 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (311)
Q Consensus 163 iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~ 242 (311)
.++.++..|-+ .+-++.+.++. .+.=-..|-|-++.+.+..+++. ..++++|+....+---..-..+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 45666666633 23455666665 33334666666677777777553 34677777655433211112478999
Q ss_pred HhcCceEEEcccccc
Q 021542 243 DELGITLIAYCPIAQ 257 (311)
Q Consensus 243 ~~~gi~v~a~s~l~~ 257 (311)
+.+|+.+...+-+..
T Consensus 224 ~~~gi~~~~~~~~es 238 (263)
T cd03320 224 RARGIPAVVSSALES 238 (263)
T ss_pred HHcCCCEEEEcchhh
Confidence 999999987654443
No 423
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=1.8e+02 Score=27.53 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHcC-ccceEeec---------CCcHHHHHHHHHHHHhcCCCeeE
Q 021542 176 NEGFIDGLGDAVEQG-LVKAVGVS---------NYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G-~ir~iGvs---------~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
+.+.|+.|..+.+.| -.-++|.. ||+.+++.++++.+...|.++.+
T Consensus 12 pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 12 PAGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 334556666666666 23445544 56666666666666666654433
No 424
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.42 E-value=5.8e+02 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=19.6
Q ss_pred ChhhHHHHHHHHHHHHHCCCCeEEC
Q 021542 70 DDRKMKAAKAAFDTSLDNGITFFDT 94 (311)
Q Consensus 70 ~~~~~~~a~~~l~~Al~~Gin~~Dt 94 (311)
..+|.+...+.++..++.|++-+=+
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~ 38 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVV 38 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 4577888888899888988886543
No 425
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.27 E-value=6e+02 Score=23.17 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~s 154 (311)
.-..++-+...++|+|..|....-.. . ...+++...+...+...+.+.++..++..
T Consensus 18 GIVa~Vt~~La~~g~NI~d~s~~~~~-------------------~-----~g~F~m~i~v~~~~~~~~~~~L~~~L~~l 73 (286)
T PRK06027 18 GIVAAVSNFLYEHGGNIVDADQFVDP-------------------E-----TGRFFMRVEFEGDGLIFNLETLRADFAAL 73 (286)
T ss_pred cHHHHHHHHHHHCCCCEEEceeEEcC-------------------C-----CCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44556777778999999996544311 0 02233333332112235577888888888
Q ss_pred HHHhCCCccceEEeecCCC--------CCcHHHHHHHHHHHHcCcc--c-eEeecCCcHHHHHHHHHHHHhcCCCeeEee
Q 021542 155 LFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--K-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 155 L~~L~~d~iDl~~lh~p~~--------~~~~~~~~~l~~l~~~G~i--r-~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q 223 (311)
-+.|+++ + .+|.... .+...-+++|-+..+.|.+ . ..=+||.+ .+..+ +++.|+++...
T Consensus 74 ~~~l~l~---i-~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~--~~~~l---A~~~gIp~~~~- 143 (286)
T PRK06027 74 AEEFEMD---W-RLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD--DLRSL---VERFGIPFHHV- 143 (286)
T ss_pred HHHhCCE---E-EEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHH---HHHhCCCEEEe-
Confidence 8888854 2 3444322 2244567777777788765 2 22245553 33443 66667665432
Q ss_pred ecCCccccCccccChhhHHHhcCceEEE
Q 021542 224 VNYSLIYRKPEENGVKAACDELGITLIA 251 (311)
Q Consensus 224 ~~~n~~~~~~~~~~ll~~~~~~gi~v~a 251 (311)
..+...+...+..+++.+++.++.++.
T Consensus 144 -~~~~~~~~~~~~~~~~~l~~~~~Dliv 170 (286)
T PRK06027 144 -PVTKETKAEAEARLLELIDEYQPDLVV 170 (286)
T ss_pred -ccCccccchhHHHHHHHHHHhCCCEEE
Confidence 222223322222478888888776654
No 426
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.09 E-value=6.6e+02 Score=23.51 Aligned_cols=89 Identities=15% Similarity=0.046 Sum_probs=57.3
Q ss_pred EEeecCCC------------CCcHHHHHHHHHHHHc-Cc---cceEeec--CCcHHHHHHHHHHHHhcCCCeeEeeecCC
Q 021542 166 YQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (311)
Q Consensus 166 ~~lh~p~~------------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~~~~~~~~~~~~~~~~~~~q~~~n 227 (311)
+.||.++. .+.++++++++++.+. +. |+++=+. |.+.++++++.+.++.. +..++-++||
T Consensus 212 iSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~--~~~VnLIpyn 289 (343)
T PRK14469 212 LSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGL--KVFVNLIPVN 289 (343)
T ss_pred EEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhcc--CcEEEEEecC
Confidence 66777654 2467889988877765 42 4455554 55677888887776543 3557788999
Q ss_pred ccccCc---ccc---ChhhHHHhcCceEEEccccc
Q 021542 228 LIYRKP---EEN---GVKAACDELGITLIAYCPIA 256 (311)
Q Consensus 228 ~~~~~~---~~~---~ll~~~~~~gi~v~a~s~l~ 256 (311)
+..... ... .+.+..+++|+.+......+
T Consensus 290 p~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g 324 (343)
T PRK14469 290 PTVPGLEKPSRERIERFKEILLKNGIEAEIRREKG 324 (343)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 875321 111 35666777899888765443
No 427
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=21.95 E-value=6e+02 Score=22.98 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=13.4
Q ss_pred ChhhHHHhcCceEEEccc
Q 021542 237 GVKAACDELGITLIAYCP 254 (311)
Q Consensus 237 ~ll~~~~~~gi~v~a~s~ 254 (311)
+....+.+.|..|+....
T Consensus 214 g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 214 IASILARRYNALIIPVFI 231 (298)
T ss_pred hHHHHHHHHCCCEEEEEE
Confidence 466788888998876555
No 428
>PRK10200 putative racemase; Provisional
Probab=21.82 E-value=3.9e+02 Score=23.45 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCC-------------CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-------------GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~-------------~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~ 208 (311)
-+.+.+++-++..-.+.+.+++|.+.++.++.. +...+.+.++.|.+.| +..|-+...+...+.+.
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 456778888888888899999999999987651 1345677788888888 78888888776555433
No 429
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.77 E-value=6e+02 Score=22.91 Aligned_cols=24 Identities=4% Similarity=0.001 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCc
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAE 96 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~ 96 (311)
+.++..++...-.+.|+..|+...
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccC
Confidence 447777788888899999999863
No 430
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=21.74 E-value=5.7e+02 Score=22.70 Aligned_cols=81 Identities=7% Similarity=0.043 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCC-CCCCCCchHHHHHHHHHhccCCCCCCc-EEEEec----CCCCCCCCCHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKERKQRDPEVE-VTVATK----FAALPWRLGRQS 146 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g-~~~~~~~sE~~lg~aL~~~~~~~~R~~-~~i~tK----~~~~~~~~~~~~ 146 (311)
+.++..+.+..+...+.+.++.--.|=.. .+ ..-+...+.... +++ ++++-+ +|. +..+.+.
T Consensus 12 ~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~------~~~~~~~~~e~~----~~~~~IfT~R~~~EGG~--~~~~~~~ 79 (231)
T COG0710 12 DIAELKEQAEKSKELDADIVELRVDLLESNVE------VLEVAKALREKD----PDKPLIFTFRTVKEGGE--FPGSEEE 79 (231)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeechhcccch------HHHHHHHHHHhc----cCCceEEEEeehhhcCC--CCCCHHH
Confidence 34777788888888888877654444321 11 334444444443 244 566655 333 3456666
Q ss_pred HHHHHHHHHHHhCCCccce
Q 021542 147 VLAALKDSLFRLGLSSVEL 165 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl 165 (311)
-.+-+....+.-+.||||+
T Consensus 80 ~i~ll~~la~~~~~d~iDi 98 (231)
T COG0710 80 YIELLKKLAELNGPDYIDI 98 (231)
T ss_pred HHHHHHHHHhhcCCCEEEE
Confidence 6667777777667899997
No 431
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.73 E-value=1.3e+02 Score=30.25 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccccccc
Q 021542 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
..+++.++.++.+++++.+.-+.|.. +...+-..+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 44666777788888887776666543 22222235889999999999855555554
No 432
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.71 E-value=6.7e+02 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcC
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG 190 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G 190 (311)
.+.+.|.+.+++. ...|..++.+..-+.|+ .+.+.+.+.++.+++..
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~-~~~~~~~e~i~~Ik~~~ 125 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN-LPFEWYLDMIRTLKEAY 125 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC-CCHHHHHHHHHHHHHHC
Confidence 4678888877754 56788888887666664 45677788888888775
No 433
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=21.71 E-value=2.7e+02 Score=25.35 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHh
Q 021542 172 GIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (311)
Q Consensus 172 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~ 214 (311)
|+..++.+.+.++.+.+.|+.-=||...|+.++++++-+.++.
T Consensus 75 DFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 75 DFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 4456788999999999999999999999999999988887765
No 434
>PRK00915 2-isopropylmalate synthase; Validated
Probab=21.68 E-value=5.9e+02 Score=25.44 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCc-cceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecC
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 226 (311)
+..+-+.|.++|+++|++- +| .....-++.++++.+.++ .+..+++......++.+++.....+.+...+-+..
T Consensus 28 K~~ia~~L~~~Gv~~IE~G---~p--~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~ 102 (513)
T PRK00915 28 KLQIAKQLERLGVDVIEAG---FP--ASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIAT 102 (513)
T ss_pred HHHHHHHHHHcCCCEEEEc---CC--CCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECC
Q ss_pred CccccCcccc-----------ChhhHHHhcCceEE
Q 021542 227 SLIYRKPEEN-----------GVKAACDELGITLI 250 (311)
Q Consensus 227 n~~~~~~~~~-----------~ll~~~~~~gi~v~ 250 (311)
|.++....-. +.+++|+++|..+.
T Consensus 103 Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 137 (513)
T PRK00915 103 SPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE 137 (513)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
No 435
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=21.66 E-value=8e+02 Score=24.36 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEeecCC----cHHHHHHHHHHHHh
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKK 214 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iGvs~~----~~~~~~~~~~~~~~ 214 (311)
.+++.+.+.+.++.+...- +-.-+.+.-+|. .+.+.+++.++.+.+.| +..|.++.- .|+++.++++..++
T Consensus 110 ~s~~e~l~~~~~~v~~a~~-~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 110 MTRDEVLERAVGMVKYAKN-FTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 4556666655565555432 222344444443 56777888888888887 667887763 68888888776543
No 436
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=21.63 E-value=3.4e+02 Score=22.33 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHH--cCccceEeecCCcHHHHHHHHHHHHhcCCC
Q 021542 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (311)
Q Consensus 141 ~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~ 218 (311)
..+.+.+.+.+++.-+.+|.+ ++++|-. ...++++.+.+..+ +|.|-.=|--+|+.-.+.+++.. +.
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN-----~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-----~~ 93 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSN-----HEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-----LE 93 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeC-----cHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-----CC
Confidence 457888999999999999974 6666643 34578888888865 36666667777777778888665 45
Q ss_pred eeEeeecCCccc
Q 021542 219 LASNQVNYSLIY 230 (311)
Q Consensus 219 ~~~~q~~~n~~~ 230 (311)
..++.+..+-.+
T Consensus 94 ~P~VEVHiSNi~ 105 (146)
T PRK13015 94 LPVIEVHISNVH 105 (146)
T ss_pred CCEEEEEcCCcc
Confidence 555666655544
No 437
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.63 E-value=4.2e+02 Score=28.61 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=66.7
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCccceEEeecCCC---CCcHHHHHHHHHHHHcCccceEeecCCcH--H
Q 021542 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--K 203 (311)
Q Consensus 129 ~~i~tK~~~~~~~~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~---~~~~~~~~~l~~l~~~G~ir~iGvs~~~~--~ 203 (311)
+.++..+.. .....+.+...+.+.|++.+.. .+-+.+.-.+. ...+.+.+.++.|++.| -.|.+.+|.. .
T Consensus 926 ~~~~iNis~--~~l~~~~~~~~~~~~l~~~~~~-~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G--~~~~lddfg~g~~ 1000 (1092)
T PRK09776 926 LSIALPLSV--AGLSSPTLLPFLLEQLENSPLP-PRLLHLEITETALLNHAESASRLVQKLRLAG--CRVVLSDFGRGLS 1000 (1092)
T ss_pred cEEEEEcCH--HHhCCchHHHHHHHHHHhcCCC-HHHeEEEEecHHhhcCHHHHHHHHHHHHHCC--cEEEEcCCCCCch
Confidence 334444433 2344455667777788777654 34455544433 45677889999999999 4455555532 2
Q ss_pred HHHHHHHHHHhcCCCeeEeeecCCccccCc---c----ccChhhHHHhcCceEEEcc
Q 021542 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKP---E----ENGVKAACDELGITLIAYC 253 (311)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~---~----~~~ll~~~~~~gi~v~a~s 253 (311)
.+..+.+ .+++.+-+.-+++..-. . -..++..|++.|+.+++=+
T Consensus 1001 ~~~~l~~------~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaeg 1051 (1092)
T PRK09776 1001 SFNYLKA------FMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGP 1051 (1092)
T ss_pred HHHHHHh------CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecc
Confidence 3333322 36666666544443211 0 0147889999999999743
No 438
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=21.52 E-value=3.5e+02 Score=24.66 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=59.1
Q ss_pred HHHHHHHHcCccceEeecC-CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCc-c---ccChhhHHHhcC-ceEEEccc
Q 021542 181 DGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-E---ENGVKAACDELG-ITLIAYCP 254 (311)
Q Consensus 181 ~~l~~l~~~G~ir~iGvs~-~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~-~---~~~ll~~~~~~g-i~v~a~s~ 254 (311)
+.|...++.|. .||--| ++.+.+..+++.+++.+ .|.++|..-+-..... . ..-+..+|++.+ +++...-
T Consensus 6 ~~l~~A~~~~y--av~Afn~~n~e~~~avi~aAe~~~-~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhl- 81 (282)
T TIGR01859 6 EILQKAKKEGY--AVGAFNFNNLEWTQAILEAAEEEN-SPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHL- 81 (282)
T ss_pred HHHHHHHHCCc--eEEEEEECCHHHHHHHHHHHHHhC-CCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEEC-
Confidence 34556666663 444333 46777888888777776 4556665444332211 0 012455677777 7776543
Q ss_pred ccccccCCCCCCCCCCCCC--CCCCcchHhHhhHHHHHHHHHHHHHhcCCCh
Q 021542 255 IAQGALTGKYTPQNPPTGP--RGRIYTAEYLRNLQPLLNRIKELGENYSKTS 304 (311)
Q Consensus 255 l~~G~L~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~ 304 (311)
..|..-..... .-..+. .+-.-+...++.+.+...++.++|.++|++.
T Consensus 82 -DH~~~~e~i~~-ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~V 131 (282)
T TIGR01859 82 -DHGSSYESCIK-AIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSV 131 (282)
T ss_pred -CCCCCHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 22211000000 000000 0001112224556777778999999999754
No 439
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.49 E-value=7.5e+02 Score=23.99 Aligned_cols=164 Identities=17% Similarity=0.228 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKE-RKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~-~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
.++.+.+..|++.|- ...|+.. .|...+.+.+++.|.+ .+.....+++||++-+. .+||-
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps--~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~------------qAIe~ 141 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPS--VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCS------------QAIEL 141 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCc--cccHHHHHHHHHHhhcCCCCccCcCceEEeccch------------HHHHH
Confidence 778888999998883 2356543 2455778888888643 33333578999988773 23333
Q ss_pred HHHHhCCCccceEEeecCCC----------------------CCcHHHHHHHHHHHHcCccceEeec-------CCcHHH
Q 021542 154 SLFRLGLSSVELYQLHWAGI----------------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKR 204 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~----------------------~~~~~~~~~l~~l~~~G~ir~iGvs-------~~~~~~ 204 (311)
.+..|---.-.++ +-+|.+ .+-+-=++.+|.|.++.-+--+=+- -|+.++
T Consensus 142 ~i~~LA~p~aNIL-lPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 142 AISSLANPGANIL-LPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHhcCCCCcee-cCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 3333332222222 222222 0011126778888888655433221 256788
Q ss_pred HHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhc-CceEEEcccccccccC
Q 021542 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDEL-GITLIAYCPIAQGALT 261 (311)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~-gi~v~a~s~l~~G~L~ 261 (311)
++++++.|++.++.+....+--+.+..... .+++.+-- -++|+.-+.++.|++.
T Consensus 221 L~kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~V 275 (447)
T KOG0259|consen 221 LKKIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIV 275 (447)
T ss_pred HHHHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeeccccccccc
Confidence 888888888888776665554444443221 33333322 3456655555555443
No 440
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=21.48 E-value=5.3e+02 Score=22.36 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHCCCC-----eEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCC-C--CCCHHH
Q 021542 75 KAAKAAFDTSLDNGIT-----FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALP-W--RLGRQS 146 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin-----~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~-~--~~~~~~ 146 (311)
..|.-+.-.|+-+|++ |+-.+..||- +..+-.+ ... -+.+.......+. . ..+...
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE---------~~~~~~~--~~~-----v~~~~~~~g~tw~~~~~~~d~~a 106 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGE---------EAALEKF--GLG-----VEFHGMGEGFTWETQDREADIAA 106 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhH---------HHHHHhh--ccc-----eeEEecCCceeCCCcCcHHHHHH
Confidence 6667777778888877 5567766664 3333332 110 1222222222110 1 124467
Q ss_pred HHHHHHHHHHHhCCCccceEEeecCCC------CCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021542 147 VLAALKDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lh~p~~------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
.++.++.+++.+.....|++.|.-... .+.+|+++.|..--+.=-|-.-| ...+..+.++.+.
T Consensus 107 a~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTG--r~ap~~lie~ADl 175 (198)
T COG2109 107 AKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITG--RGAPPELIELADL 175 (198)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEEC--CCCCHHHHHHHHH
Confidence 889999999999999999999986433 56777777755222222222223 3344555555444
No 441
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.47 E-value=6.8e+02 Score=25.82 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCccceEeecCCc--HHHHHHHHHHHHhcCCCeeEeeecCCccccCcc-------ccChhhHHHhcCc
Q 021542 177 EGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-------ENGVKAACDELGI 247 (311)
Q Consensus 177 ~~~~~~l~~l~~~G~ir~iGvs~~~--~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-------~~~ll~~~~~~gi 247 (311)
..+...+..|++.| -.|++.+|. ...+..+.. ++|+.+-+.-+++..... -..++.+|++.||
T Consensus 678 ~~~~~~l~~l~~~G--~~i~ld~fg~~~~~~~~l~~------l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 749 (799)
T PRK11359 678 TEIFKRIQILRDMG--VGLSVDDFGTGFSGLSRLVS------LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNL 749 (799)
T ss_pred HHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHhh------CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCC
Confidence 45667778888888 456666663 233333322 356666665554432111 1157889999999
Q ss_pred eEEEccc
Q 021542 248 TLIAYCP 254 (311)
Q Consensus 248 ~v~a~s~ 254 (311)
.+++-+.
T Consensus 750 ~via~gV 756 (799)
T PRK11359 750 TVVAEGV 756 (799)
T ss_pred eEEEEcC
Confidence 9998543
No 442
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.40 E-value=5.4e+02 Score=26.79 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEECCc--ccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEe--cCCCCCCCC----
Q 021542 71 DRKMKAAKAAFDTSLDNGITFFDTAE--VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--KFAALPWRL---- 142 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~Dta~--~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~t--K~~~~~~~~---- 142 (311)
..|+++.++.++...+.|+.-|=.+. .|-|+.. |..+++.+++.. .++-|++ ++++...-+
T Consensus 135 ~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~H------E~~v~eiire~~-----~~i~V~~shev~p~~~~~eR~~ 203 (674)
T COG0145 135 PLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEH------ELRVAEIIREIG-----PDIPVSLSHEVSPEIGEYERAN 203 (674)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHH------HHHHHHHHHHhc-----CCceEEechhcchhcCcccchh
Confidence 47789999999999999999775443 3555555 999999999886 4666666 776521111
Q ss_pred ----------CHHHHHHHHHHHHHHhCCCccceEEeecCC
Q 021542 143 ----------GRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (311)
Q Consensus 143 ----------~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~ 172 (311)
-.....+++++.|+.-|.+ .+++++-...
T Consensus 204 TavlnA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 204 TAVLNAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred hheeeeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 1245566677777777765 6777776544
No 443
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.24 E-value=4.6e+02 Score=25.36 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 73 ~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+.++..+.++.+.+.|+..+...=+||- ...+.+.+++.++
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~Gl---------------------------------------P~qt~e~~~~~l~ 215 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGI---------------------------------------PGQTHASWMESLD 215 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCccceEEee-----------cCCCCCcHHHHHHHHHHHHcCccceEeecCC
Q 021542 153 DSLFRLGLSSVELYQLH-----------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh-----------~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~ 200 (311)
..+ +|+.++|.++.+. .++.....+.++...+.-.+.=...+++++|
T Consensus 216 ~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~yei~~f 273 (430)
T PRK08208 216 QAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQTSMRMF 273 (430)
T ss_pred HHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeEEeecce
No 444
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.18 E-value=7.5e+02 Score=23.82 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKER-KQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~-~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
.+..+.|+.++++|+- .+.|+...- -+.|..|.++. .-..+.+.++.+.- |...+..
T Consensus 41 p~i~~Al~~rvdhGvf----GY~~~~~~~------~~ai~~w~~~r~~~~i~~e~i~~~p~------------VVpgi~~ 98 (388)
T COG1168 41 PEIIEALRERVDHGVF----GYPYGSDEL------YAAIAHWFKQRHQWEIKPEWIVFVPG------------VVPGISL 98 (388)
T ss_pred HHHHHHHHHHHhcCCC----CCCCCCHHH------HHHHHHHHHHhcCCCCCcceEEEcCc------------chHhHHH
Confidence 6677788999999963 233333111 23344444432 11112233333322 3445555
Q ss_pred HHHHhCCCccceEEeecCCCCCcH--------------------H---HHHHHHHHHHcCccceEeecC--------CcH
Q 021542 154 SLFRLGLSSVELYQLHWAGIWGNE--------------------G---FIDGLGDAVEQGLVKAVGVSN--------YSE 202 (311)
Q Consensus 154 sL~~L~~d~iDl~~lh~p~~~~~~--------------------~---~~~~l~~l~~~G~ir~iGvs~--------~~~ 202 (311)
.++.| |+.=|-+.++.|-..+.- . =++.||+...++.++.+=+|| |+.
T Consensus 99 ~I~~~-T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ 177 (388)
T COG1168 99 AIRAL-TKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTK 177 (388)
T ss_pred HHHHh-CcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccH
Confidence 55555 345677777776542211 1 167778777777766666665 445
Q ss_pred HHHHHHHHHHHhcCCCeeEeeecCCcc
Q 021542 203 KRLRNAYEKLKKRGIPLASNQVNYSLI 229 (311)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~q~~~n~~ 229 (311)
+.+.++.+.|.++++.+.+..+.--+.
T Consensus 178 eeL~~i~elc~kh~v~VISDEIHaDlv 204 (388)
T COG1168 178 EELRKIAELCLRHGVRVISDEIHADLV 204 (388)
T ss_pred HHHHHHHHHHHHcCCEEEeeccccccc
Confidence 777777777777776665554443333
No 445
>PTZ00124 adenosine deaminase; Provisional
Probab=21.02 E-value=7.2e+02 Score=23.58 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHCCCCeEE--CCcccC---CCCCCCCCchHHHHHHHHHhccCCCCCC-cEEEEecCCC-CCCCCCHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFD--TAEVYG---SRASFGAINSETLLGRFIKERKQRDPEV-EVTVATKFAA-LPWRLGRQSV 147 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~D--ta~~Yg---~g~~~~~~~sE~~lg~aL~~~~~~~~R~-~~~i~tK~~~-~~~~~~~~~i 147 (311)
.-+.+.++.+.+.|+.+++ +++.+. .|. ..++++--.++...... ++ +..|..|+=. .....+.+..
T Consensus 106 r~a~e~~~d~~~dgV~Y~Eir~~P~~~~~~~gl-----~~~~vv~av~~g~~~a~-~~~~~gI~~~lI~~~~R~~~~e~a 179 (362)
T PTZ00124 106 DLAKHAVFNKYKEGVVLMEFRYSPTFVAFKHNL-----DIDLIHQAIVKGIKEAV-ELLDHKIEVGLLCIGDTGHDAAPI 179 (362)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCchhhhcCCCC-----CHHHHHHHHHHHHHHHH-hccCCCceEeEEEEecCCCCHHHH
Confidence 4566677778888999887 344331 121 23455544433221100 11 2333333311 0023566777
Q ss_pred HHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCcc--ceEeecC--CcHHHHHHHHHHHHhcCCCeeEe
Q 021542 148 LAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLV--KAVGVSN--YSEKRLRNAYEKLKKRGIPLASN 222 (311)
Q Consensus 148 ~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~i--r~iGvs~--~~~~~~~~~~~~~~~~~~~~~~~ 222 (311)
++.++..++.-. . ++=+.-... .+.....+.++.+++.|+- -|.|-+. .+.+.+.+++... .+.=+
T Consensus 180 ~e~~~~a~~~~~--~--vvGiDLaG~E~~~~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l-----~~~RI 250 (362)
T PTZ00124 180 KESADFCLKHKA--D--FVGFDHAGHEVDLKPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVL-----KVKRI 250 (362)
T ss_pred HHHHHHHHhccC--C--eEEEeccCCCCCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHh-----CCCcc
Confidence 777887776322 2 332322111 2345678888889988764 4555432 1223343443321 11111
Q ss_pred eecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 223 QVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 223 q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
--.+++.. ...+++.+++++|.+-. .|...
T Consensus 251 GHG~~~~~----d~~l~~~l~~~~I~lEv-CPtSN 280 (362)
T PTZ00124 251 GHGIRVAE----SQELIDMVKEKDILLEV-CPISN 280 (362)
T ss_pred ccccccCC----CHHHHHHHHHcCCeEEE-CCcch
Confidence 22222222 12599999999998865 44443
No 446
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.91 E-value=6.3e+02 Score=22.87 Aligned_cols=124 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH--HCCCCeEE----CCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHH
Q 021542 73 KMKAAKAAFDTSL--DNGITFFD----TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (311)
Q Consensus 73 ~~~~a~~~l~~Al--~~Gin~~D----ta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~ 146 (311)
+.++++++++++. =.|.|-|. -+..|+. ..+.++... +++++..-+ +
T Consensus 101 saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~------------~~~y~~~an-----~~~~vi~qi----------E 153 (267)
T PRK10128 101 TAEQARQVVSATRYPPYGERGVGASVARAARWGR------------IENYMAQAN-----DSLCLLVQV----------E 153 (267)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCC------------hHHHHHHhc-----cccEEEEEE----------C
Q ss_pred HHHHHHHHHHHhCCCccceEEee---------cCCCCCcHHHHHHHHH----HHHcCccceEeecCCcHHHHHHHHHHHH
Q 021542 147 VLAALKDSLFRLGLSSVELYQLH---------WAGIWGNEGFIDGLGD----AVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (311)
Q Consensus 147 i~~~l~~sL~~L~~d~iDl~~lh---------~p~~~~~~~~~~~l~~----l~~~G~ir~iGvs~~~~~~~~~~~~~~~ 213 (311)
-.+.+++.=+-+.++.||.+++- .+......++.+++++ .++.|| .+|+...+++...++++.
T Consensus 154 t~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~-- 229 (267)
T PRK10128 154 SKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAW-- 229 (267)
T ss_pred CHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHc--
Q ss_pred hcCCCeeEeeecCCcc
Q 021542 214 KRGIPLASNQVNYSLI 229 (311)
Q Consensus 214 ~~~~~~~~~q~~~n~~ 229 (311)
|.++.++.....++
T Consensus 230 --G~~~v~~g~D~~~l 243 (267)
T PRK10128 230 --GANFVAVGVDTMLY 243 (267)
T ss_pred --CCcEEEEChHHHHH
No 447
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=6e+02 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEee
Q 021542 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGV 197 (311)
Q Consensus 142 ~~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGv 197 (311)
.++..+++.++ ++. ..+|++.++.-+ .+.+......+.|.-|-.
T Consensus 61 ~s~~~~r~~~~----kfr-~~~dlI~V~~~~-------lkv~R~Av~~~rVDil~~ 104 (229)
T COG1603 61 ESPSQLRRLVK----KFR-SKVDLIAVEPGS-------LKVNRAAVENKRVDILSH 104 (229)
T ss_pred CChHHHHHHHH----hhh-cceeEEEEccCc-------HHHHHHHHhccCccEEEc
Confidence 44555554444 332 234666666532 344444555555555444
No 448
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=20.84 E-value=4.7e+02 Score=26.55 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCccceEEeecCCC--CCcHHHHHHHHHHHHcCccceEe
Q 021542 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVG 196 (311)
Q Consensus 145 ~~i~~~l~~sL~~L~~d~iDl~~lh~p~~--~~~~~~~~~l~~l~~~G~ir~iG 196 (311)
+...+-|+..++..+-.+.+--.+- ..+ ....+..+-|.+|+++|+||.+.
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~~~~iv-vGFs~~~il~a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSEKHKIV-VGFSHESILAAADPLIELIASGKIKGVV 412 (576)
T ss_pred hhHHHHHHHHHhccCCcccccceeE-EeecHHHHHHHHHHHHHHHhcCCcceEE
Confidence 6678889999999888777711110 011 22445666788889999998765
No 449
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=20.83 E-value=5.6e+02 Score=22.23 Aligned_cols=74 Identities=23% Similarity=0.129 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeE
Q 021542 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (311)
Q Consensus 143 ~~~~i~~~l~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~ 221 (311)
-...+...+++.++.+| +++.++......+..+..+.++.+... ++..|=+.+....... .+..+...++|+.+
T Consensus 13 f~~~~~~gi~~~a~~~g---~~~~~~~~~~~~~~~~~~~~i~~~~~~-~vdgiI~~~~~~~~~~-~~~~~~~~giPvV~ 86 (268)
T cd06306 13 YWLSVNYGMVEEAKRLG---VSLKLLEAGGYPNLAKQIAQLEDCAAW-GADAILLGAVSPDGLN-EILQQVAASIPVIA 86 (268)
T ss_pred HHHHHHHHHHHHHHHcC---CEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCChhhHH-HHHHHHHCCCCEEE
Confidence 34667888888888887 455555432222345566777777765 4666666655444333 23334555666554
No 450
>PRK06361 hypothetical protein; Provisional
Probab=20.75 E-value=5.3e+02 Score=21.91 Aligned_cols=185 Identities=14% Similarity=0.044 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHH---HHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG---RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 75 ~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg---~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
....++++.|.+.|+..|=.+++...... ...+- +..++..... .=+++...-+.. ...+.+ ..+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~------~~~~~~~~~~~~~~~~~~-~i~v~~GiE~~~----~~~~~~-~~~ 77 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNL------EEILEKLVRAAEELELYW-DIEVIPGVELTH----VPPKLI-PKL 77 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccH------HHHHHHHHHHHHHHhhcC-CCEEEEEEEEcc----cCchhh-chH
Confidence 45678999999999999876666532110 21211 1122221100 123444444432 222233 233
Q ss_pred HHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCcccc
Q 021542 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (311)
.+.+.+++ .|+..+|............. .++.+.|.+.-+|=-.. ...++++.+.+.++.+.++- ....+
T Consensus 78 ~~~~~~~~---~~~~svH~~~~~~~~~~~~~-~~a~~~~~~dvlaHpd~---~~~~~~~~~~~~~~~lEin~---~~~~~ 147 (212)
T PRK06361 78 AKKARDLG---AEIVVVHGETIVEPVEEGTN-LAAIECEDVDILAHPGL---ITEEEAELAAENGVFLEITA---RKGHS 147 (212)
T ss_pred HHHHHHCC---CEEEEECCCCcchhhhhhhH-HHHHhCCCCcEecCcch---hhHHHHHHHHHcCeEEEEEC---CCCcc
Confidence 34555554 66668995432111111111 45678888765553322 11234444555555555542 11112
Q ss_pred CccccChhhHHHhcCceEEEcccccccccCCCCCCCCCCCCCCCCCcchHhHhhHHHHHHHHHHHHHhcCCChhHhh
Q 021542 232 KPEENGVKAACDELGITLIAYCPIAQGALTGKYTPQNPPTGPRGRIYTAEYLRNLQPLLNRIKELGENYSKTSTQAS 308 (311)
Q Consensus 232 ~~~~~~ll~~~~~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~q~a 308 (311)
.... .+++++++.|+.++.-|.... ++. .. ..+.+..++++.|.+..++-
T Consensus 148 ~~~~-~~l~~a~~~gi~vv~~SDaH~----------------------~~d---~~-~~~~~~~i~~~~gl~~~~v~ 197 (212)
T PRK06361 148 LTNG-HVARIAREAGAPLVINTDTHA----------------------PSD---LI-TYEFARKVALGAGLTEKELE 197 (212)
T ss_pred cchH-HHHHHHHHhCCcEEEECCCCC----------------------HHH---HH-HHHHHHHHHcCCCCCHHHHH
Confidence 2222 599999999999876544331 111 11 23478889999999888763
No 451
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.74 E-value=35 Score=32.80 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=38.1
Q ss_pred ecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHH--hcCceEEEcccccccccCCCCCCCCCCCCCC
Q 021542 197 VSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD--ELGITLIAYCPIAQGALTGKYTPQNPPTGPR 274 (311)
Q Consensus 197 vs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~--~~gi~v~a~s~l~~G~L~~~~~~~~~p~~~~ 274 (311)
+.+.+++.+.+.++.-.+.|+.|..+....|. +.++.++ .+=++++.+ ++.+|+++.....
T Consensus 133 ~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~--------~~~~~~~~~~R~~giVSR---GGs~l~~WM~~n~------ 195 (420)
T PF01964_consen 133 IVDMTEDDFFDVIEKQAKDGVDFMTIHCGITR--------ETLERLKKSGRIMGIVSR---GGSILAAWMLHNG------ 195 (420)
T ss_dssp GGG--HHHHHHHHHHHHHHT--EEEE-TT--G--------GGGGGGT--TSSS----H---HHHHHHHHHHHHT------
T ss_pred hhhCCHHHHHHHHHHHHHcCCCEEEEccchhH--------HHHHHHhhhccccCcccc---chHHHHHHHHhcC------
Confidence 44677787777776655556666665444322 3666666 445566654 3334443221100
Q ss_pred CCCcchHhHhhHHHHHHHHHHHHHhcCCChh
Q 021542 275 GRIYTAEYLRNLQPLLNRIKELGENYSKTST 305 (311)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~l~~iA~~~g~s~~ 305 (311)
-.++.+++ .++|-+|+++|++|++
T Consensus 196 ---~ENPly~~----fD~lLeI~k~yDVtLS 219 (420)
T PF01964_consen 196 ---KENPLYEH----FDRLLEIAKEYDVTLS 219 (420)
T ss_dssp ---S--HHHHT----HHHHHHHHTTTT-EEE
T ss_pred ---CcCcHHHh----HHHHHHHHHHhCeeEe
Confidence 01111222 3377888999987653
No 452
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.69 E-value=5.8e+02 Score=22.36 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred ceEeecC---CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEcccccc
Q 021542 193 KAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (311)
Q Consensus 193 r~iGvs~---~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~ 257 (311)
..+++++ .++.++.++.+.+++.+++..+.....+. .-+-..+++.|+.++.-.|++.
T Consensus 173 ~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~~~la~~~g~~vv~ld~l~~ 233 (256)
T PF01297_consen 173 GVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLAEALAKETGVKVVYLDPLGG 233 (256)
T ss_dssp EEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHHHHHHHCCT-EEEESSTTCS
T ss_pred eeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHHHHHHHHcCCcEEEeCCCcC
Confidence 3444444 36788899988888888877765443322 1134446788999999888843
No 453
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.58 E-value=2.4e+02 Score=26.43 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=29.6
Q ss_pred HcCccceEeecCCcHHHHHHHHHHHHhc--CCCeeEeeecCCccccCccccChhhHHHhcCceEEEc
Q 021542 188 EQGLVKAVGVSNYSEKRLRNAYEKLKKR--GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (311)
Q Consensus 188 ~~G~ir~iGvs~~~~~~~~~~~~~~~~~--~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~ 252 (311)
+.|=+..||....+++++++.++..+.. +-||-++-+.+.. .+...+.++.|.+.++.++..
T Consensus 25 ~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~---~~~~~~~l~vi~e~~v~~V~~ 88 (320)
T cd04743 25 EGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVD---TELRAAQLAVVRAIKPTFALI 88 (320)
T ss_pred hCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCC---CcchHHHHHHHHhcCCcEEEE
Confidence 4455555665555666666655544442 2345554433211 111113555555555555543
No 454
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.56 E-value=6.9e+02 Score=23.15 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 021542 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLF 156 (311)
Q Consensus 77 a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~sL~ 156 (311)
-.++...+...|+.++-++..|-.... .+.+-+|++... -.++++---....|..+++ +.++..-.
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~------~~~i~~A~~~~G-----ps~I~~~spC~~~~~~~~~---~~~~~~k~ 225 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDF------IRKLKKAKEIRG-----FKFIHLLAPCPPGWRFDPD---KTIEIARL 225 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhCCC-----CEEEEEeCCCCCCCCcChH---HHHHHHHH
Confidence 356777778889999998888755333 666666665322 2333333323333444443 45555555
Q ss_pred HhCCCccceEEeec-------CCCC--CcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHH
Q 021542 157 RLGLSSVELYQLHW-------AGIW--GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (311)
Q Consensus 157 ~L~~d~iDl~~lh~-------p~~~--~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~ 211 (311)
.-.+.|.-||-+.. +.+. +.......-+-|+.+|+.+++ .++.++++-+.
T Consensus 226 Av~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~ 284 (300)
T PRK11864 226 AVETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHL-----TEEEIKGLQEE 284 (300)
T ss_pred HHHcCCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcC-----CHHHHHHHHHH
Confidence 55666777766553 1110 111112333457889999988 36666666554
No 455
>PRK06256 biotin synthase; Validated
Probab=20.56 E-value=6.7e+02 Score=23.07 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeE-ECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 021542 71 DRKMKAAKAAFDTSLDNGITFF-DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (311)
Q Consensus 71 ~~~~~~a~~~l~~Al~~Gin~~-Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~ 149 (311)
..+.++..+.++.+.+.|++-| -.+..++.... .-+.+-+.++.... +-.+-+.+-.+. .+.+.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~-----~~~~~~e~i~~i~~---~~~i~~~~~~g~----l~~e~l-- 155 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGK-----EVDQVVEAVKAIKE---ETDLEICACLGL----LTEEQA-- 155 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCch-----HHHHHHHHHHHHHh---cCCCcEEecCCc----CCHHHH--
Confidence 3567889999999999998633 22222222100 01234445554431 112333333321 333333
Q ss_pred HHHHHHHHhCCCccceEEeecCCC---------CCcHHHHHHHHHHHHcCccc----eEeecCCcHHHHHHHHHHHHhcC
Q 021542 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKKRG 216 (311)
Q Consensus 150 ~l~~sL~~L~~d~iDl~~lh~p~~---------~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~~~~~~~~~~~~~~~ 216 (311)
+.|++.|.+.+-+ -+.. +. ...++.+++++.+++.|.-- -+|+ +.+.+++.+.+..+++.+
T Consensus 156 ---~~LkeaG~~~v~~-~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~ 229 (336)
T PRK06256 156 ---ERLKEAGVDRYNH-NLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELD 229 (336)
T ss_pred ---HHHHHhCCCEEec-CCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCC
Confidence 3477778665433 1111 11 23578899999999998632 2445 567777877777766554
No 456
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.52 E-value=6.2e+02 Score=22.61 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=40.3
Q ss_pred HHHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHH
Q 021542 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~ 208 (311)
.+.+...+...=|++..-...- ...+++++++.+++.| +.-|++++.....+.++
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG-~T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASG-RTPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCC-CCHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 3445556666778887766432 4667999999999998 78899998876666554
No 457
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=20.51 E-value=6.3e+02 Score=22.68 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhHHHhcCceEEEccccccc
Q 021542 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (311)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~~~~~gi~v~a~s~l~~G 258 (311)
-++.++.++.+.+++.+++..+.+..++.- -+-..+++.|+.++.-.|++.+
T Consensus 204 ps~~~l~~l~~~ik~~~v~~if~e~~~~~~-------~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 204 PSPKQLAELVEFVKKSDVKYIFFEENASSK-------IAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHHHHHHcCCcEEEecccccc
Confidence 367889999888888888888776665431 1344677889988877777754
No 458
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.50 E-value=2.9e+02 Score=27.97 Aligned_cols=161 Identities=11% Similarity=0.052 Sum_probs=94.7
Q ss_pred HHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCC-C-C----CcEEEEecCCCCCCCCCHHHHHHHHH
Q 021542 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-P-E----VEVTVATKFAALPWRLGRQSVLAALK 152 (311)
Q Consensus 79 ~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~-~-R----~~~~i~tK~~~~~~~~~~~~i~~~l~ 152 (311)
+++.+|-.+|. +.+ .-|.|.- +|+++..++.+..-.. | | ..+|+---++. +....+.+.
T Consensus 50 ~ivAAaAnAGh-waE---LAGGGq~-----t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~--~qig~krLv---- 114 (717)
T COG4981 50 DIVAAAANAGH-WAE---LAGGGQV-----TEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWK--LQIGGKRLV---- 114 (717)
T ss_pred HHHHHHhcCCc-eee---ecCCccc-----CHHHHHHHHHHHHhccCCCccceeeEEEechHHhh--hcCChHHHH----
Confidence 46666666664 333 3444432 5999999987653111 0 1 12222222211 222222222
Q ss_pred HHHHHhCCCccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccC
Q 021542 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (311)
Q Consensus 153 ~sL~~L~~d~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (311)
+-++.-|. -||-+.|-.-- .+.++..+.+++|-+.| +.|+++-.-+.+++...+.+++.+-..|.++|.+=--.-..
T Consensus 115 ~kara~G~-~I~gvvIsAGI-P~le~A~ElI~~L~~~G-~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGH 191 (717)
T COG4981 115 QKARASGA-PIDGVVISAGI-PSLEEAVELIEELGDDG-FPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGH 191 (717)
T ss_pred HHHHhcCC-CcceEEEecCC-CcHHHHHHHHHHHhhcC-ceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCc
Confidence 22233454 58888876532 36788899999999999 89999999999999999999988877788888874332211
Q ss_pred c--c--cc---ChhhHHHhc-CceEEEcccccc
Q 021542 233 P--E--EN---GVKAACDEL-GITLIAYCPIAQ 257 (311)
Q Consensus 233 ~--~--~~---~ll~~~~~~-gi~v~a~s~l~~ 257 (311)
. + .. ..+...+++ ||-++.-+-++.
T Consensus 192 HSweDld~llL~tYs~lR~~~NIvl~vGgGiGt 224 (717)
T COG4981 192 HSWEDLDDLLLATYSELRSRDNIVLCVGGGIGT 224 (717)
T ss_pred cchhhcccHHHHHHHHHhcCCCEEEEecCCcCC
Confidence 1 1 00 112333333 888887555544
No 459
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.40 E-value=4.5e+02 Score=21.00 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=61.3
Q ss_pred HHHHHHHHHHH-HCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 021542 75 KAAKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (311)
Q Consensus 75 ~~a~~~l~~Al-~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l~~ 153 (311)
+-..+++...+ ++|+..+|+.-.-.. |+++-.+.+..+ +=+-+|+-.+ .+...++ .+-+
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~---------e~~v~aa~~~~a-----diVglS~L~t-----~~~~~~~-~~~~ 72 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQ---------EEFIDAAIETDA-----DAILVSSLYG-----HGEIDCK-GLRE 72 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCH---------HHHHHHHHHcCC-----CEEEEecccc-----CCHHHHH-HHHH
Confidence 56677888888 559999998765554 888888877643 3344555543 3333344 4444
Q ss_pred HHHHhCCCccceEEe-ecCCCCCcHHHHHHHHHHHHcCccceEeecC
Q 021542 154 SLFRLGLSSVELYQL-HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN 199 (311)
Q Consensus 154 sL~~L~~d~iDl~~l-h~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 199 (311)
.|+.-|.. |+..+ =..-..+..+.-+.-.+|++.|--+-+|-..
T Consensus 73 ~l~~~gl~--~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 73 KCDEAGLK--DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHHHCCCC--CCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 66676764 34333 3221124444445566788888666555544
No 460
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=20.13 E-value=3.4e+02 Score=24.05 Aligned_cols=78 Identities=12% Similarity=0.231 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHcCc-cceEeecCC------cHHHHHHHHHHHHhcCCCeeEeeecCCccccC----ccccChhhHHHh
Q 021542 176 NEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK----PEENGVKAACDE 244 (311)
Q Consensus 176 ~~~~~~~l~~l~~~G~-ir~iGvs~~------~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~----~~~~~ll~~~~~ 244 (311)
....++.+++|++.|. |..||+=.| ++..+...++.....|.++.+-.+.+...... ..-..+++.|.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~ 214 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLA 214 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHc
Confidence 3467888999999998 999998554 46778888777777777777766665443210 001258888888
Q ss_pred cC--ceEEEcc
Q 021542 245 LG--ITLIAYC 253 (311)
Q Consensus 245 ~g--i~v~a~s 253 (311)
+. .+|+-|+
T Consensus 215 ~p~v~gi~~Wg 225 (254)
T smart00633 215 HPAVTGVTVWG 225 (254)
T ss_pred CCCeeEEEEeC
Confidence 75 5666664
No 461
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=20.11 E-value=6.7e+02 Score=22.84 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHCCCCeEECCccc----CCCCCCCCCchHHHHH---HHHHhccCCC-CCCcEEEEecCCCCCCCCCHH
Q 021542 74 MKAAKAAFDTSLDNGITFFDTAEVY----GSRASFGAINSETLLG---RFIKERKQRD-PEVEVTVATKFAALPWRLGRQ 145 (311)
Q Consensus 74 ~~~a~~~l~~Al~~Gin~~Dta~~Y----g~g~~~~~~~sE~~lg---~aL~~~~~~~-~R~~~~i~tK~~~~~~~~~~~ 145 (311)
...+...+..+++.|++++|.-..- +.+. ..+..+. +++.+...+. =|-.+.++. . .....+
T Consensus 72 ~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~-----~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~--~---~~~~~~ 141 (325)
T cd01320 72 ERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGL-----SFDEVVEAVLRGLDEAEAEFGIKARLILCG--L---RHLSPE 141 (325)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCchhhccCCC-----CHHHHHHHHHHHHHHHHHhcCCeEEEEEEe--c---CCCCHH
Confidence 4567778888999999998842110 1111 1133322 2333221000 022333321 1 123455
Q ss_pred HHHHHHHHHHHHhCCCccceEEeecCCC-CCcHHHHHHHHHHHHcCccceEeecCC-cHHHHHHHHHHHHhcCCCeeEee
Q 021542 146 SVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQ 223 (311)
Q Consensus 146 ~i~~~l~~sL~~L~~d~iDl~~lh~p~~-~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~~~~~~~~~~~~~~~~~~~q 223 (311)
.+++.++...+. +-+.+.-+-+...+. .+.++....++.+++.|+--.+=++.. ..+.+..+++. .+ +..+-
T Consensus 142 ~~~~~~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~---~g--~~~i~ 215 (325)
T cd01320 142 SAQETLELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDL---LG--AERIG 215 (325)
T ss_pred HHHHHHHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHH---cC--Ccccc
Confidence 666666665543 222222222222222 345677777888888876544433332 33445544432 22 22111
Q ss_pred ecCCccccCccccChhhHHHhcCceEE
Q 021542 224 VNYSLIYRKPEENGVKAACDELGITLI 250 (311)
Q Consensus 224 ~~~n~~~~~~~~~~ll~~~~~~gi~v~ 250 (311)
-.+++. ...+.++..+++||.+.
T Consensus 216 H~~~l~----~~~~~~~~l~~~gi~v~ 238 (325)
T cd01320 216 HGIRAI----EDPELVKRLAERNIPLE 238 (325)
T ss_pred hhhccC----ccHHHHHHHHHcCCeEE
Confidence 111111 11148999999999885
No 462
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=20.07 E-value=7.9e+02 Score=23.68 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=48.6
Q ss_pred ccceEEeecCCCCCcHHHHHHHHHHHHcCccceEeecCCcHHHHHHHHHHHHhcCCCeeEeeecCCccccCccccChhhH
Q 021542 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (311)
Q Consensus 162 ~iDl~~lh~p~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~~~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ll~~ 241 (311)
.+|++.++.-...+.+++.+..++..+.=.+ -+=+.+.+++.++++++.+...+ |-+.-.. ..+-+ ++.+.
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~k--pLL~aAt----~eNyk--~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKK--PLLYAAT----EENYK--AMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS----EEEEEB----TTTHH--HHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCC--cEEeEcC----HHHHH--HHHHH
Confidence 5777778765432247777777777665333 33344558888888877654332 2221111 11112 48888
Q ss_pred HHhcCceEEEccccccc
Q 021542 242 CDELGITLIAYCPIAQG 258 (311)
Q Consensus 242 ~~~~gi~v~a~s~l~~G 258 (311)
|.++|..+++.+|..-.
T Consensus 140 A~~y~~pl~v~sp~Dln 156 (386)
T PF03599_consen 140 AKEYGHPLIVSSPIDLN 156 (386)
T ss_dssp HHHCT-EEEEE-SSCHH
T ss_pred HHHcCCeEEEEecccHH
Confidence 88999999888876543
No 463
>PLN02623 pyruvate kinase
Probab=20.02 E-value=9.5e+02 Score=24.56 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEECCcccCCCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 021542 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (311)
Q Consensus 72 ~~~~~a~~~l~~Al~~Gin~~Dta~~Yg~g~~~~~~~sE~~lg~aL~~~~~~~~R~~~~i~tK~~~~~~~~~~~~i~~~l 151 (311)
.++.+.. .|+.+++.|+.||-.+-.- .... -..+.+.++... .++.|..|+- +++.+ +.+
T Consensus 276 lTekD~~-di~f~~~~~vD~ialSFVr-~a~D------V~~~r~~l~~~~-----~~~~iiakIE------t~eaV-eNl 335 (581)
T PLN02623 276 ITEKDWE-DIKFGVENKVDFYAVSFVK-DAQV------VHELKDYLKSCN-----ADIHVIVKIE------SADSI-PNL 335 (581)
T ss_pred CCHHHHH-HHHHHHHcCCCEEEECCCC-CHHH------HHHHHHHHHHcC-----CcceEEEEEC------CHHHH-HhH
Confidence 3444444 4789999999998654222 2111 333466666654 5789999993 33333 466
Q ss_pred HHHHHHhCCCccceEEeecCCC
Q 021542 152 KDSLFRLGLSSVELYQLHWAGI 173 (311)
Q Consensus 152 ~~sL~~L~~d~iDl~~lh~p~~ 173 (311)
++.++ .+|.+++-.-|-
T Consensus 336 deIl~-----g~DgImIgrgDL 352 (581)
T PLN02623 336 HSIIT-----ASDGAMVARGDL 352 (581)
T ss_pred HHHHH-----hCCEEEECcchh
Confidence 66666 578888876554
Done!