Query 021544
Match_columns 311
No_of_seqs 234 out of 1631
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 1.4E-44 3.1E-49 337.3 20.5 174 97-308 30-209 (255)
2 PRK01318 membrane protein inse 100.0 5.1E-44 1.1E-48 361.7 19.2 172 99-309 297-474 (521)
3 PRK00145 putative inner membra 100.0 5.9E-43 1.3E-47 320.5 18.9 172 104-307 2-177 (223)
4 PRK01001 putative inner membra 100.0 1.5E-42 3.3E-47 357.9 18.5 189 100-308 547-743 (795)
5 PRK01622 OxaA-like protein pre 100.0 1.9E-41 4E-46 316.4 19.7 169 98-306 32-210 (256)
6 TIGR03592 yidC_oxa1_cterm memb 100.0 7.4E-41 1.6E-45 297.0 16.4 147 130-308 1-148 (181)
7 PRK02463 OxaA-like protein pre 100.0 5.3E-39 1.2E-43 306.8 19.4 168 101-308 34-216 (307)
8 COG0706 YidC Preprotein transl 100.0 6.2E-39 1.3E-43 307.0 18.2 174 99-309 83-263 (314)
9 PRK02201 putative inner membra 100.0 6E-39 1.3E-43 311.5 18.2 166 100-290 100-274 (357)
10 PF02096 60KD_IMP: 60Kd inner 100.0 1.2E-38 2.6E-43 284.1 12.8 137 130-291 2-139 (198)
11 PRK01315 putative inner membra 100.0 9.9E-38 2.1E-42 300.4 18.3 122 100-221 4-132 (329)
12 PRK03449 putative inner membra 100.0 5.5E-37 1.2E-41 292.6 18.7 119 104-222 2-123 (304)
13 PRK00247 putative inner membra 100.0 9.3E-34 2E-38 280.4 18.5 137 104-240 2-148 (429)
14 PRK02654 putative inner membra 100.0 9E-32 2E-36 257.9 17.5 114 100-220 2-119 (375)
15 KOG1239 Inner membrane protein 99.8 1.1E-19 2.4E-24 178.2 13.5 164 108-307 84-260 (372)
16 KOG1239 Inner membrane protein 98.4 2.2E-07 4.8E-12 91.8 3.3 193 100-293 4-199 (372)
17 COG1422 Predicted membrane pro 97.7 0.00021 4.5E-09 65.3 9.3 92 129-221 44-143 (201)
18 PF01956 DUF106: Integral memb 90.2 1.4 3.1E-05 38.5 7.7 66 154-219 43-113 (168)
19 TIGR03593 yidC_nterm membrane 83.9 0.81 1.7E-05 44.7 2.7 23 100-122 343-365 (366)
20 PF09973 DUF2208: Predicted me 74.2 15 0.00033 34.6 7.8 83 128-219 22-110 (233)
21 COG1422 Predicted membrane pro 69.7 96 0.0021 28.8 12.3 66 154-222 75-148 (201)
22 PF05280 FlhC: Flagellar trans 66.2 9.8 0.00021 34.3 4.5 38 183-220 38-86 (175)
23 COG3105 Uncharacterized protei 57.3 36 0.00078 29.7 6.1 36 132-175 16-51 (138)
24 PF09958 DUF2192: Uncharacteri 52.4 25 0.00054 33.2 4.8 45 159-203 9-53 (231)
25 PRK12772 bifunctional flagella 52.0 36 0.00078 36.3 6.5 26 166-191 479-510 (609)
26 PRK12721 secretion system appa 47.4 34 0.00074 34.0 5.1 24 167-190 217-246 (349)
27 KOG3817 Uncharacterized conser 46.7 79 0.0017 32.1 7.5 70 131-200 277-352 (452)
28 PRK09108 type III secretion sy 46.6 33 0.00071 34.2 4.9 31 144-179 201-234 (353)
29 TIGR00328 flhB flagellar biosy 45.1 37 0.0008 33.7 5.0 13 167-179 217-232 (347)
30 PF05190 MutS_IV: MutS family 43.3 37 0.00081 25.7 3.8 36 163-198 2-37 (92)
31 COG1377 FlhB Flagellar biosynt 42.6 1E+02 0.0023 31.0 7.7 13 167-179 224-239 (363)
32 PF14335 DUF4391: Domain of un 42.4 41 0.00088 30.9 4.5 39 153-191 177-220 (221)
33 PF01988 VIT1: VIT family; In 42.0 2.1E+02 0.0047 25.9 9.2 25 171-195 71-95 (213)
34 PF05752 Calici_MSP: Calicivir 41.7 58 0.0013 29.4 5.2 45 151-195 21-65 (167)
35 PRK05702 flhB flagellar biosyn 39.3 86 0.0019 31.3 6.6 13 167-179 224-239 (359)
36 PRK12468 flhB flagellar biosyn 38.3 92 0.002 31.5 6.7 25 167-191 224-254 (386)
37 KOG4075 Cytochrome c oxidase, 36.5 85 0.0018 28.3 5.4 61 158-218 49-123 (167)
38 cd02434 Nodulin-21_like_3 Nodu 35.7 54 0.0012 30.4 4.3 23 173-195 74-96 (225)
39 PRK06298 type III secretion sy 35.5 1E+02 0.0022 30.8 6.4 25 166-190 217-247 (356)
40 PF05377 FlaC_arch: Flagella a 35.1 1.1E+02 0.0025 22.7 5.0 37 160-197 16-54 (55)
41 PRK13454 F0F1 ATP synthase sub 33.7 3.1E+02 0.0067 24.4 8.7 43 134-176 40-90 (181)
42 COG1333 ResB ResB protein requ 33.1 2E+02 0.0044 30.0 8.2 105 130-236 56-181 (478)
43 PRK09609 hypothetical protein; 32.3 4.4E+02 0.0095 26.1 10.0 71 100-175 54-129 (312)
44 PRK13453 F0F1 ATP synthase sub 30.9 3E+02 0.0064 24.2 8.0 18 136-153 29-46 (173)
45 TIGR00828 EIID-AGA PTS system, 30.7 1.6E+02 0.0035 28.4 6.6 44 155-198 22-68 (271)
46 COG4879 Uncharacterized protei 29.8 1.5E+02 0.0032 27.8 5.9 25 177-201 30-54 (243)
47 PHA01750 hypothetical protein 29.4 2.8E+02 0.006 21.7 6.8 13 180-192 60-72 (75)
48 PF06695 Sm_multidrug_ex: Puta 29.3 2.8E+02 0.0061 23.2 7.2 60 129-193 14-73 (121)
49 PF10225 DUF2215: Uncharacteri 29.1 1.3E+02 0.0029 28.3 5.8 90 108-198 127-225 (249)
50 PF06472 ABC_membrane_2: ABC t 29.0 2.7E+02 0.0058 26.2 7.9 37 136-172 181-217 (281)
51 PRK09174 F0F1 ATP synthase sub 28.2 4.2E+02 0.0091 24.2 8.7 43 134-176 62-112 (204)
52 COG3707 AmiR Response regulato 28.1 1.6E+02 0.0035 27.2 5.9 48 147-195 114-161 (194)
53 PHA00327 minor capsid protein 26.7 1.2E+02 0.0026 27.5 4.7 43 153-198 37-79 (187)
54 PRK09855 PTS system N-acetylga 26.6 86 0.0019 30.1 4.0 42 155-199 24-71 (263)
55 PF05529 Bap31: B-cell recepto 26.4 3.2E+02 0.007 24.2 7.5 14 132-145 108-121 (192)
56 cd02433 Nodulin-21_like_2 Nodu 26.3 91 0.002 29.2 4.1 20 176-195 94-113 (234)
57 cd02432 Nodulin-21_like_1 Nodu 25.9 1E+02 0.0022 28.6 4.3 21 176-196 82-102 (218)
58 PRK12722 transcriptional activ 25.8 3.7E+02 0.0081 24.6 7.8 38 183-220 38-86 (187)
59 PRK02201 putative inner membra 25.5 7E+02 0.015 25.1 10.9 35 274-308 262-307 (357)
60 PRK11103 PTS system mannose-sp 25.2 2.2E+02 0.0048 27.6 6.6 44 155-198 32-78 (282)
61 PF06936 Selenoprotein_S: Sele 24.9 1.5E+02 0.0033 27.1 5.1 13 130-142 35-47 (190)
62 KOG1532 GTPase XAB1, interacts 24.7 3.9E+02 0.0084 26.7 8.1 91 100-202 217-310 (366)
63 PF11853 DUF3373: Protein of u 24.6 93 0.002 32.6 4.1 22 155-176 28-49 (489)
64 PRK06771 hypothetical protein; 24.5 2.3E+02 0.005 23.3 5.5 46 131-176 3-48 (93)
65 PRK12860 transcriptional activ 23.9 3.6E+02 0.0078 24.8 7.3 37 183-219 38-85 (189)
66 PF08479 POTRA_2: POTRA domain 23.1 91 0.002 23.4 2.9 31 165-195 17-53 (76)
67 PF10112 Halogen_Hydrol: 5-bro 22.8 5.4E+02 0.012 22.8 8.7 14 129-142 31-44 (199)
68 PF00816 Histone_HNS: H-NS his 22.8 96 0.0021 24.4 3.1 20 177-196 21-40 (93)
69 PRK08476 F0F1 ATP synthase sub 22.7 4.8E+02 0.01 22.2 8.0 43 134-176 16-66 (141)
70 PF00153 Mito_carr: Mitochondr 21.9 57 0.0012 24.7 1.6 72 137-219 13-89 (95)
71 PF04420 CHD5: CHD5-like prote 21.5 1.7E+02 0.0038 25.6 4.7 23 154-176 36-58 (161)
72 PF11460 DUF3007: Protein of u 21.4 3.4E+02 0.0074 22.7 6.1 38 139-176 52-89 (104)
73 PRK12495 hypothetical protein; 20.8 1.3E+02 0.0028 28.5 3.8 35 166-200 9-45 (226)
74 TIGR03142 cytochro_ccmI cytoch 20.7 4.3E+02 0.0092 21.8 6.7 45 132-176 3-54 (117)
75 PF05600 DUF773: Protein of un 20.3 1.2E+02 0.0025 31.8 3.9 35 163-197 472-506 (507)
76 PF08412 Ion_trans_N: Ion tran 20.2 86 0.0019 24.7 2.2 36 162-198 5-43 (77)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.4e-44 Score=337.25 Aligned_cols=174 Identities=27% Similarity=0.592 Sum_probs=157.3
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544 97 TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 97 ~~~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
.+.+|.|++++++|++++++++|..+ +.|||+|||++|+++|++++|++++|+|+++||+++|||+++||||||+
T Consensus 30 ~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~ 104 (255)
T PRK02944 30 PKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS 104 (255)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC
Confidence 35678889999999999999999876 3589999999999999999999999999999999999999999999997
Q ss_pred C----HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCcc
Q 021544 177 N----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGIS 252 (311)
Q Consensus 177 D----~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s 252 (311)
| ++|+|+|+++|||||||||++||+|+++|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 105 ~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-dLs~~D------------ 169 (255)
T PRK02944 105 KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-DLGQAD------------ 169 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-ccCcch------------
Confidence 4 56889999999999999999999999999999999999999885 4788999999 999998
Q ss_pred ccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCC--CCCcHHHHHHhHhhcc
Q 021544 253 WLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP--PQMIQLKRTHFLFSSF 308 (311)
Q Consensus 253 ~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~--~~~dp~q~~~~~~m~~ 308 (311)
||++||+++++++++++++... ++.+++|+.|+.+|++
T Consensus 170 ------------------p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~m~~i~p~ 209 (255)
T PRK02944 170 ------------------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMMLWLMPI 209 (255)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999987654 3557777777777664
No 2
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=5.1e-44 Score=361.74 Aligned_cols=172 Identities=35% Similarity=0.679 Sum_probs=160.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCH
Q 021544 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178 (311)
Q Consensus 99 ~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~ 178 (311)
-++||+.+++.|+.++|+++|..+ .|||+|||++|+++|++++|++++|+|+++||+++||||++||+|||+|+
T Consensus 297 ~~~G~~~~~~~pl~~~L~~i~~~~------g~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~ 370 (521)
T PRK01318 297 VDYGWLWFITKPLFWLLDFLHSFV------GNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDP 370 (521)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhH
Confidence 478999999999999999999876 28999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCcchhhhhccCCCccccccc
Q 021544 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF 257 (311)
Q Consensus 179 e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl-W~~dLt~pD~i~~~~~~~~~s~~~p~ 257 (311)
+++|+|+|+|||||||||++||+|+|+|+||||++|++++++. ++.+++|+ ||+||+.+|
T Consensus 371 ~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~--el~~~~fl~Wi~DLs~~D----------------- 431 (521)
T PRK01318 371 QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSI--ELRHAPFIGWIHDLSAPD----------------- 431 (521)
T ss_pred HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHH--HhccCchheeeccccccc-----------------
Confidence 9999999999999999999999999999999999999999976 47888998 999999999
Q ss_pred cCCCCCCCCcchhhHHHH-----HHHHHHHHHHHhhhCCCCCCcHHHHHHhHhhccc
Q 021544 258 VDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQMIQLKRTHFLFSSFF 309 (311)
Q Consensus 258 ~~g~~~~gw~~~~py~IL-----PIL~~v~~~ls~k~~~~~~~dp~q~~~~~~m~~f 309 (311)
||+|| ||+++++++++++++..+ +||.|+++|++|+++
T Consensus 432 -------------p~~il~~~~lPil~~~~~~~~~~l~~~~-~~~~q~kim~~mpi~ 474 (521)
T PRK01318 432 -------------PYFILHIGLLPILMGITMFLQQKLNPTP-TDPMQAKIMKFMPLI 474 (521)
T ss_pred -------------cchhHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHH
Confidence 56777 999999999999987554 799999999988754
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.9e-43 Score=320.52 Aligned_cols=172 Identities=34% Similarity=0.622 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhccc--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHH
Q 021544 104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI 181 (311)
Q Consensus 104 ~~~i~~p~~~iL~~i~~~~~~~g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~ 181 (311)
++++.++++.+++++|+.++.++ .+.|||+||+++|+++|++++|++++|+|+++||+++|||+++||+|||+|++|+
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 35778888888888888775432 3568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccccCCC
Q 021544 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH 261 (311)
Q Consensus 182 q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~ 261 (311)
|+|++++|||||+||++||+|+++|+|+|+++|+++|+++ ++.++||+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCcc---------------------
Confidence 9999999999999999999999999999999999999986 57899999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhhhCCCC--CCcHHHHHHhHhhc
Q 021544 262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPP--QMIQLKRTHFLFSS 307 (311)
Q Consensus 262 ~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~--~~dp~q~~~~~~m~ 307 (311)
||++||+++++++|++++++.+. ..+..++.++.+|+
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~~~~~~~~~k~m~~~~~ 177 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKADSSQAGQMKTMNIGMS 177 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 78999999999999999887653 12233344444444
No 4
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.5e-42 Score=357.88 Aligned_cols=189 Identities=32% Similarity=0.551 Sum_probs=154.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHH
Q 021544 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e 179 (311)
.+||+++|+.|+.+++.+++..++.+ ..|||+|||++|++||++++|++++|+|+++||+++||||++||||||+|++
T Consensus 547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q 624 (795)
T PRK01001 547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK 624 (795)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence 46999999999877665554444322 1389999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCcchhhhhccCCCccccccc
Q 021544 180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF 257 (311)
Q Consensus 180 ~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl--W~~dLt~pD~i~~~~~~~~~s~~~p~ 257 (311)
|+|+|+|+|||||||||++||||+|+|+||||++|++++++. ++.+++|+ |++||+.+|++. +|..|.
T Consensus 625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLSapDplf--------~~~~~i 694 (795)
T PRK01001 625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLTAPDVLF--------SWETPI 694 (795)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhccCCCccc--------cccccc
Confidence 999999999999999999999999999999999999999875 46778898 999999999752 233221
Q ss_pred cCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCCc------HHHHHHhHhhcc
Q 021544 258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMI------QLKRTHFLFSSF 308 (311)
Q Consensus 258 ~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~d------p~q~~~~~~m~~ 308 (311)
+..| .+++||||++++++|+++++++....| .+|+.|+.+|+.
T Consensus 695 ----~FiG----d~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPI 743 (795)
T PRK01001 695 ----WFIG----NEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMAL 743 (795)
T ss_pred ----cccc----cchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHH
Confidence 1111 267899999999999999987543222 234445566654
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.9e-41 Score=316.38 Aligned_cols=169 Identities=25% Similarity=0.497 Sum_probs=150.3
Q ss_pred cccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhchHHHHHHHHH
Q 021544 98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR 173 (311)
Q Consensus 98 ~~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs----~~Km~~LqPem~~Iq~k 173 (311)
.++|+|++++++|+.++++++|+.+ +.+||+||+++|+++|++++|++++|+|+ ++||+++|||+++||+|
T Consensus 32 ~~~~~~~~~~~~p~~~ll~~l~~~~-----~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k 106 (256)
T PRK01622 32 HSDGFFDHYFVYPFSFLIQFVAHHI-----GGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK 106 (256)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence 3567888999999999999999876 25899999999999999999999999999 89999999999999999
Q ss_pred hhc--CHH---HHHHHHHHHHHHhCCCCCc-chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhcc
Q 021544 174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247 (311)
Q Consensus 174 yk~--D~e---~~q~E~~~LyKk~gvnPl~-gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~ 247 (311)
||+ |++ ++|+|++++||||||||++ ||+|+++|+|||+++|+++|++. ++.++||+|+ ||+.+|
T Consensus 107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D------- 176 (256)
T PRK01622 107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD------- 176 (256)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence 997 433 5889999999999999999 99999999999999999999974 6889999999 999876
Q ss_pred CCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCCcHHHHHHhHhh
Q 021544 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQMIQLKRTHFLFS 306 (311)
Q Consensus 248 ~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~dp~q~~~~~~m 306 (311)
+|||++++++++++++++++...+++|+++++.|
T Consensus 177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m 210 (256)
T PRK01622 177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQ 210 (256)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 5999999999999999887555566665554443
No 6
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=7.4e-41 Score=296.96 Aligned_cols=147 Identities=39% Similarity=0.716 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 021544 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (311)
Q Consensus 130 ~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPI 209 (311)
|||+||+++|+++|++++|++++|+|+++||+++|||++++|||||+|++|+++|++++|||||+||++||+|+++|+|+
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhh
Q 021544 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL 289 (311)
Q Consensus 210 fi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~ 289 (311)
|+++|+++|++. ++.++||+||+||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999975 68899999999999998 8899999999999999998
Q ss_pred CCCCCCcHHHHH-HhHhhcc
Q 021544 290 MKPPQMIQLKRT-HFLFSSF 308 (311)
Q Consensus 290 ~~~~~~dp~q~~-~~~~m~~ 308 (311)
+.....++.|.+ |+.+|+.
T Consensus 129 ~~~~~~~~~~~k~m~~~~p~ 148 (181)
T TIGR03592 129 SPSGPPDPAQQKIMMYIMPL 148 (181)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 766544554444 4445554
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=5.3e-39 Score=306.85 Aligned_cols=168 Identities=26% Similarity=0.448 Sum_probs=142.2
Q ss_pred CCc-hHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhchHHHHHHHHHhh
Q 021544 101 GGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRYA 175 (311)
Q Consensus 101 gGw-~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs----~~Km~~LqPem~~Iq~kyk 175 (311)
+|| |+++++|+.++++++|+.+ +.+||+|||++|++||++++|++++|+++ ++||+++|||+++||+|||
T Consensus 34 ~g~~~~~l~~p~~~~l~~i~~~~-----g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk 108 (307)
T PRK02463 34 TGFIWNFLGAPMSYFIDYFANNL-----GLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLK 108 (307)
T ss_pred CchHHHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHh
Confidence 565 5799999999999999876 25899999999999999999999988865 6899999999999999999
Q ss_pred cC-----HHHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccC
Q 021544 176 GN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSG 248 (311)
Q Consensus 176 ~D-----~e~~q~E~~~LyKk~gvnPl~--gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~ 248 (311)
++ ++++|+|++++|||||+||++ ||+|+|+|+|||+++|++++.. +++.+++|+|+ ||+.||
T Consensus 109 ~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~-------- 177 (307)
T PRK02463 109 NATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS-------- 177 (307)
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh--------
Confidence 73 235789999999999999998 8999999999999999999975 57889999999 898655
Q ss_pred CCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCCCC---cHHHHHHhHhhcc
Q 021544 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQM---IQLKRTHFLFSSF 308 (311)
Q Consensus 249 ~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~~~---dp~q~~~~~~m~~ 308 (311)
++|||+.+++++++++++..... .++|+.||.+|+.
T Consensus 178 ------------------------~iLpii~~v~~~~q~~~~~~~~~~~q~~~mk~m~~~~Pi 216 (307)
T PRK02463 178 ------------------------LVLTAIIGVLYFFQSWLSMMGVPEEQREQMKAMMYMMPI 216 (307)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Confidence 68999999999999987754322 2233445555543
No 8
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.2e-39 Score=306.96 Aligned_cols=174 Identities=34% Similarity=0.597 Sum_probs=158.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhh-cC
Q 021544 99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GN 177 (311)
Q Consensus 99 ~~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk-~D 177 (311)
.++||+.++..++...+++++.+. | .|||++||++|++||++++|++.++.++++||+++|||+++|||||| +|
T Consensus 83 ~~~~~f~~~~~~~~~~~~~~~~~~---g--~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~ 157 (314)
T COG0706 83 SDYGWFWNILAPLFPLLLFIDSFS---G--LNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTD 157 (314)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhc---C--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCC
Confidence 368999999988899999987654 2 38999999999999999999999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCcchhhhhccCCCcccccc
Q 021544 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLP 256 (311)
Q Consensus 178 ~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gfl-W~~dLt~pD~i~~~~~~~~~s~~~p 256 (311)
++++|+|+++|||||||||++||+|+++|+|||+++|+++++.. .+..++|+ |++||+.+|
T Consensus 158 ~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~~~d---------------- 219 (314)
T COG0706 158 KQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLSLPD---------------- 219 (314)
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhcccCCC----------------
Confidence 99999999999999999999999999999999999999999875 46777777 999999998
Q ss_pred ccCCCCCCCCcchhhHH--HHHHHHHHHHHHHhhhCCC---CCCcHHHHHHhHhhccc
Q 021544 257 FVDGHPPLGWHDTAAYL--VLPVLLVVSQYASMELMKP---PQMIQLKRTHFLFSSFF 309 (311)
Q Consensus 257 ~~~g~~~~gw~~~~py~--ILPIL~~v~~~ls~k~~~~---~~~dp~q~~~~~~m~~f 309 (311)
|++ ++||++++++|++++++.. .+.|++|++|+.+|+.+
T Consensus 220 --------------p~~~~~~pii~gv~~f~q~~ls~~~~~~~q~~~~~~~~~impi~ 263 (314)
T COG0706 220 --------------PDYILLLPILAGVTMFLQQKLSPRNLSTPQDPQQKKMMYIMPII 263 (314)
T ss_pred --------------CchhhHHHHHHHHHHHHHHHhccccCCcccCHHHHHHHHHHHHH
Confidence 444 5699999999999999887 47899999999999853
No 9
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6e-39 Score=311.52 Aligned_cols=166 Identities=20% Similarity=0.365 Sum_probs=140.9
Q ss_pred cCC-chHHHHHHHHHHHHHHH--HhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544 100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 100 ~gG-w~~~i~~p~~~iL~~i~--~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
++| |++++++|+.+++.++| ...+ ...+++||+|||++|+++|++++|++++|+++++||+++|||+++||+|||+
T Consensus 100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 455 77999999999999997 2221 1235689999999999999999999999999999999999999999999997
Q ss_pred C------HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCC
Q 021544 177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG 250 (311)
Q Consensus 177 D------~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~ 250 (311)
| ++++|+|+++|||||||||++||+|+|+|+|||+++|+++|.+. ++....|+|+ ||+.+|+..
T Consensus 179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi-dLs~~~~~~------- 248 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI-DLSATSWQE------- 248 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc-ccCCCChhh-------
Confidence 6 67899999999999999999999999999999999999999875 5778899999 999987321
Q ss_pred ccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhhhC
Q 021544 251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELM 290 (311)
Q Consensus 251 ~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~ 290 (311)
+ + .+..+|++++++++++++++++++
T Consensus 249 ---~---~--------~~~~~~l~l~ii~~~~~~ls~~l~ 274 (357)
T PRK02201 249 ---I---F--------AGNWIYLPILIIVVPVQALSQLLP 274 (357)
T ss_pred ---h---c--------cccchHHHHHHHHHHHHHHHHHHH
Confidence 0 0 111267788888888888887654
No 10
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.2e-38 Score=284.14 Aligned_cols=137 Identities=44% Similarity=0.842 Sum_probs=129.5
Q ss_pred chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 021544 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV 209 (311)
Q Consensus 130 ~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPI 209 (311)
|||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++||||||||+++|+|+++|+||
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi 81 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI 81 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh-hccccCccccccCCCCcchhhhhccCCCccccccccCCCCCCCCcchhhHHHHHHHHHHHHHHHhh
Q 021544 210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME 288 (311)
Q Consensus 210 fi~lf~~Lr~ma~-~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~g~~~~gw~~~~py~ILPIL~~v~~~ls~k 288 (311)
|+++|+++|++++ +++.++||+|++||+.+|+. . ..||++||++++++++++++
T Consensus 82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~---------------------~----~~p~~iLPil~~~~~~~~~~ 136 (198)
T PF02096_consen 82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT---------------------M----GLPYFILPILAGASMFLNQE 136 (198)
T ss_pred HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc---------------------c----hhHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 67889999999999999942 1 12899999999999999999
Q ss_pred hCC
Q 021544 289 LMK 291 (311)
Q Consensus 289 ~~~ 291 (311)
++.
T Consensus 137 ~~~ 139 (198)
T PF02096_consen 137 LSM 139 (198)
T ss_pred HHH
Confidence 864
No 11
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=9.9e-38 Score=300.40 Aligned_cols=122 Identities=30% Similarity=0.605 Sum_probs=110.8
Q ss_pred cCCchHHHHHHHHHHH----HHHHHhhhcc-c--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHH
Q 021544 100 NGGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ 172 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL----~~i~~~~~~~-g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~ 172 (311)
-++||++|++|++|++ .++|..++.+ | .+++||+|||++|+++|++++|++++|+|+++||+++|||+++||+
T Consensus 4 ~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~ 83 (329)
T PRK01315 4 LADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3679999999988887 4456655432 2 2468999999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhh
Q 021544 173 RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221 (311)
Q Consensus 173 kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma 221 (311)
|||+|++++++|+++|||||||||++||+|+|+|+|||+++|+++|+++
T Consensus 84 kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~ 132 (329)
T PRK01315 84 KYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAA 132 (329)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865
No 12
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=5.5e-37 Score=292.62 Aligned_cols=119 Identities=29% Similarity=0.607 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhc-cc--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHH
Q 021544 104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180 (311)
Q Consensus 104 ~~~i~~p~~~iL~~i~~~~~~-~g--l~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~ 180 (311)
++++.+|+.+++.++|..+.. +| .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|+++
T Consensus 2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~ 81 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK 81 (304)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence 567888999999999987642 12 356899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 021544 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (311)
Q Consensus 181 ~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~ 222 (311)
+++|+++|||||||||++||+|+|+|+|||+++|+++|++..
T Consensus 82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~ 123 (304)
T PRK03449 82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNR 123 (304)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999854
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=9.3e-34 Score=280.40 Aligned_cols=137 Identities=28% Similarity=0.435 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhc-ccC--CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcC---
Q 021544 104 FGFISEAMEFVLKILKDGIDA-VHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN--- 177 (311)
Q Consensus 104 ~~~i~~p~~~iL~~i~~~~~~-~gl--~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D--- 177 (311)
+++|++|+++++.++|.+++. +|. +++||++|+++|++||++++|++++|+++++||+.+|||+++||+|||++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 578999999999999998763 453 46799999999999999999999999999999999999999999999974
Q ss_pred --HHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCcc
Q 021544 178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPT 240 (311)
Q Consensus 178 --~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~--~~l~~~gflW~~dLt~pD 240 (311)
++++++|+++|||||||||+.||+|+|+|+|||+++|++||+|+. +|+.+..+.|+--|+.+|
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~ 148 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEE 148 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHH
Confidence 357899999999999999999999999999999999999999974 355444445555566555
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.98 E-value=9e-32 Score=257.92 Aligned_cols=114 Identities=32% Similarity=0.564 Sum_probs=107.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHH----HHHHHhh
Q 021544 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA 175 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~----~Iq~kyk 175 (311)
|+||..+..+++.++++++|..+ .+||+|||++|+++|++++|++++|+|+++||+.+||||+ +||+|||
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~v------gswGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK 75 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIV------PSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK 75 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence 57897777789999999999865 2899999999999999999999999999999999999985 7999999
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 021544 176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220 (311)
Q Consensus 176 ~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~m 220 (311)
+|++++|+|+++|||||| ||++||+|+|+|+|||+++|+++|+.
T Consensus 76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGS 119 (375)
T ss_pred CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999999999999999999999983
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=178.19 Aligned_cols=164 Identities=18% Similarity=0.314 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcC------HHHH
Q 021544 108 SEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERI 181 (311)
Q Consensus 108 ~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D------~e~~ 181 (311)
+..+++.|+.+|+.. +.+||.+|+..|+.+|.+++|+.++++|+.+|+.+++|||+++.++.+.- ....
T Consensus 84 ~~~lq~~l~~~h~~~-----g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~ 158 (372)
T KOG1239|consen 84 VATLQNELERLHVYS-----GLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSW 158 (372)
T ss_pred hhHHHHHHHHHHHHh-----CCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHH
Confidence 457889999999987 35899999999999999999999999999999999999999999998751 2356
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCcchhhhhccCCCccccccccC
Q 021544 182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVD 259 (311)
Q Consensus 182 q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~--~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~~~ 259 (311)
|+|++++||+||++| +...-+++|.|+|++.|.+||.|+. ++..++|++||+||+.+|
T Consensus 159 q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d------------------- 218 (372)
T KOG1239|consen 159 QEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD------------------- 218 (372)
T ss_pred HHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-------------------
Confidence 779999999999999 9888888999999999999999985 477888999999999998
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHhhhCCCC-----CCcHHHHHHhHhhc
Q 021544 260 GHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPP-----QMIQLKRTHFLFSS 307 (311)
Q Consensus 260 g~~~~gw~~~~py~ILPIL~~v~~~ls~k~~~~~-----~~dp~q~~~~~~m~ 307 (311)
|++++|+++..++...+++.... ..-+.++.++.+.+
T Consensus 219 -----------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (372)
T KOG1239|consen 219 -----------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILP 260 (372)
T ss_pred -----------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhh
Confidence 78999999999888888766431 34556666655543
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=2.2e-07 Score=91.78 Aligned_cols=193 Identities=26% Similarity=0.283 Sum_probs=170.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHH
Q 021544 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE 179 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e 179 (311)
.+.|+..+....+..+..++.....++.+..++.++.+.|+++.+...|+...+..+..-++..+|....+...+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 57888888888888888888877777777889999999999999999999998999999999999999999988888765
Q ss_pred --HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCcchhhhhccCCCccccccc
Q 021544 180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF 257 (311)
Q Consensus 180 --~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dLt~pD~i~~~~~~~~~s~~~p~ 257 (311)
.+|.++.++|+-.|++.|.+|+...+-++..+..|.+.++ .+....+.++.|++.+...-...+.....++.|..+.
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999986 5555667889999988887777777777888999999
Q ss_pred cCCCCCCCCc-chhhHHHHHHHHHHHHHHHhhhCCCC
Q 021544 258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPP 293 (311)
Q Consensus 258 ~~g~~~~gw~-~~~py~ILPIL~~v~~~ls~k~~~~~ 293 (311)
.+++..-||. +...+.+++....+++|+..+.|..+
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~ 199 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVP 199 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhcc
Confidence 8888888988 88888999999999999999988743
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=97.71 E-value=0.00021 Score=65.29 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHhCCCCCcch
Q 021544 129 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGC 200 (311)
Q Consensus 129 ~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~-----D~---e~~q~E~~~LyKk~gvnPl~gc 200 (311)
.+.-+.|+++.+++=+. +-+.-+-....+||+++|.+++|.||++++ |. +|+|+|+++...+..--.-..+
T Consensus 44 ~~p~lvilV~avi~gl~-~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 44 LPPHLVILVAAVITGLY-ITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred cccHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777644 223334456789999999999999999875 43 3666666665554432222356
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 021544 201 LPTLATIPVWIGLYQALSNVA 221 (311)
Q Consensus 201 LP~LiQiPIfi~lf~~Lr~ma 221 (311)
-||+.++++.|-+|.-++...
T Consensus 123 kPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 123 KPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 799988888888888888765
No 18
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=90.23 E-value=1.4 Score=38.52 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=29.8
Q ss_pred HHHHHHHHhchHHHHHHHHHhhc-CHHHHHHHHHHHHHHhCCCCCcchHHHH----HHHHHHHHHHHHHHh
Q 021544 154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLETSRLYRQAGVNPLAGCLPTL----ATIPVWIGLYQALSN 219 (311)
Q Consensus 154 ~rs~~Km~~LqPem~~Iq~kyk~-D~e~~q~E~~~LyKk~gvnPl~gcLP~L----iQiPIfi~lf~~Lr~ 219 (311)
-+.++++++++-+.++++++... ..++++++.+++.++..--....+-|++ +|+|+|..++....+
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~~f~g 113 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINYFFSG 113 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 44455666666666666664432 2334444444333332211112233444 455555555544443
No 19
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=83.88 E-value=0.81 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=21.5
Q ss_pred cCCchHHHHHHHHHHHHHHHHhh
Q 021544 100 NGGWFGFISEAMEFVLKILKDGI 122 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~ 122 (311)
++||++||+.|+-|+|+++|.++
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~v 365 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSLV 365 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999865
No 20
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=74.18 E-value=15 Score=34.65 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHHHHHHhhhccHHHHH-HHHHHHhc---hHHHHH--HHHHhhcCHHHHHHHHHHHHHHhCCCCCcchH
Q 021544 128 PYSYGFAIILLTVIVKVATFPLTKKQVE-STLAMQNL---QPKIKA--IQQRYAGNQERIQLETSRLYRQAGVNPLAGCL 201 (311)
Q Consensus 128 ~~~wg~aIIl~TliVRlil~PL~ikq~r-s~~Km~~L---qPem~~--Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcL 201 (311)
|..||..+++-.++.=.+++-.+.++.+ ..+.++++ +|-.+| ..|-..+| ++.++|+++..|.+ +.
T Consensus 22 p~y~~~~filYfiv~~~i~~~~~~Rs~rr~~~~~~Ei~~g~~L~eEk~~~kl~~kD-~el~~E~~~~~k~~-------~~ 93 (233)
T PF09973_consen 22 PQYYFEVFILYFIVFFGIMIVMGIRSYRRGRKPRSEISKGRPLFEEKNANKLMEKD-KELQKEYKKQMKAS-------MM 93 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccHHHHhcCCcccccccHHHHHHhC-HHHHHHHHHHHHHH-------HH
Confidence 5678888888888877887777777666 11122222 222210 00000112 35666777777765 34
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021544 202 PTLATIPVWIGLYQALSN 219 (311)
Q Consensus 202 P~LiQiPIfi~lf~~Lr~ 219 (311)
+++ -+|+++.++..+.+
T Consensus 94 ~ll-~~~i~ii~~~~~~~ 110 (233)
T PF09973_consen 94 NLL-ILPIYIILFFLLYP 110 (233)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 343 36666666655554
No 21
>COG1422 Predicted membrane protein [Function unknown]
Probab=69.69 E-value=96 Score=28.83 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHhchHHHHHHHH--------HhhcCHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 021544 154 VESTLAMQNLQPKIKAIQQ--------RYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN 222 (311)
Q Consensus 154 ~rs~~Km~~LqPem~~Iq~--------kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~LiQiPIfi~lf~~Lr~ma~ 222 (311)
.+-+..|++.|.|.+|-++ |.++.|+++++.++++.|..= .|+. .-..+.||+|.-++.-++....
T Consensus 75 ~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf-kPM~--~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 75 KELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF-KPML--YISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHH--HHHHHHHHHHHHHHHHHccCcc
Confidence 4555677788888888775 333445567677777777553 3643 2345689999999999998753
No 22
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=66.23 E-value=9.8 Score=34.30 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=24.1
Q ss_pred HHHHHHHHH-hCCCCCcchHHH----------HHHHHHHHHHHHHHHhh
Q 021544 183 LETSRLYRQ-AGVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (311)
Q Consensus 183 ~E~~~LyKk-~gvnPl~gcLP~----------LiQiPIfi~lf~~Lr~m 220 (311)
.++.+|||| +|++|-+|.+|. -++--+|..+|+.+++.
T Consensus 38 ~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~~ 86 (175)
T PF05280_consen 38 ERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRKN 86 (175)
T ss_dssp HHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHhc
Confidence 456789999 899999999874 26778899999888863
No 23
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.26 E-value=36 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhh
Q 021544 132 GFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA 175 (311)
Q Consensus 132 g~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk 175 (311)
-+.|++-.+++|+. -++-++++++|-||++.|.++.
T Consensus 16 vvGi~IG~li~Rlt--------~~~~k~q~~~q~ELe~~K~~ld 51 (138)
T COG3105 16 VVGIIIGALIARLT--------NRKLKQQQKLQYELEKVKAQLD 51 (138)
T ss_pred HHHHHHHHHHHHHc--------chhhhhHHHHHHHHHHHHHHHH
Confidence 34556666666653 2333344456667777766554
No 24
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=52.39 E-value=25 Score=33.24 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcchHHH
Q 021544 159 AMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPT 203 (311)
Q Consensus 159 Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~gcLP~ 203 (311)
|.+.+---+.++-++-.-|++++-..+++.|+++|+.|+.|.-|.
T Consensus 9 RI~va~~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 9 RIEVATDLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 333333344444444222788999999999999999999997653
No 25
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=51.96 E-value=36 Score=36.29 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=15.1
Q ss_pred HHHHHHHHhhc---CHH---HHHHHHHHHHHH
Q 021544 166 KIKAIQQRYAG---NQE---RIQLETSRLYRQ 191 (311)
Q Consensus 166 em~~Iq~kyk~---D~e---~~q~E~~~LyKk 191 (311)
.-+|+|++||+ |+| |.+|.++++.++
T Consensus 479 skqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~ 510 (609)
T PRK12772 479 TKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQ 510 (609)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34677778886 654 444444554443
No 26
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=47.40 E-value=34 Score=34.01 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHHHHHHhhc---CHH---HHHHHHHHHHH
Q 021544 167 IKAIQQRYAG---NQE---RIQLETSRLYR 190 (311)
Q Consensus 167 m~~Iq~kyk~---D~e---~~q~E~~~LyK 190 (311)
-+|+|++||+ |++ |.++.++++.+
T Consensus 217 kqEvKdE~Ke~EGdP~iK~rrR~~~re~~~ 246 (349)
T PRK12721 217 KDDVKQEYKDSEGDPEIKQKRRELQSEIQS 246 (349)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3667778885 764 34444444443
No 27
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.67 E-value=79 Score=32.12 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHH--HHHhhc--CH--HHHHHHHHHHHHHhCCCCCcch
Q 021544 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAI--QQRYAG--NQ--ERIQLETSRLYRQAGVNPLAGC 200 (311)
Q Consensus 131 wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~I--q~kyk~--D~--e~~q~E~~~LyKk~gvnPl~gc 200 (311)
...|+|++.+....+-+|+....+..-+--+..+|--.++ +|.|.+ +. .+.-+|+++.-+|-++++|+-.
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkvv 352 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKVV 352 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Confidence 3446677777777888998875442222112233332222 456654 22 2455778888899999998743
No 28
>PRK09108 type III secretion system protein HrcU; Validated
Probab=46.64 E-value=33 Score=34.16 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=16.2
Q ss_pred HHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc---CHH
Q 021544 144 VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---NQE 179 (311)
Q Consensus 144 lil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~---D~e 179 (311)
++=++...++.....||. -+|+|++||+ |++
T Consensus 201 ~~D~~~qr~~~~k~lkMS-----kqEvK~E~K~~EGdP~ 234 (353)
T PRK09108 201 AADWKIQRWLFIRDNRMS-----KDEVKREHKESEGDPH 234 (353)
T ss_pred HHHHHHHHHHHHHHCCCC-----HHHHHHHHHhccCCHH
Confidence 333444444444444443 3667778885 664
No 29
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=45.14 E-value=37 Score=33.75 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=8.8
Q ss_pred HHHHHHHhhc---CHH
Q 021544 167 IKAIQQRYAG---NQE 179 (311)
Q Consensus 167 m~~Iq~kyk~---D~e 179 (311)
-+|+|++||+ |++
T Consensus 217 kqEVKdE~K~~EGdP~ 232 (347)
T TIGR00328 217 KQEVKDELKQSEGDPE 232 (347)
T ss_pred HHHHHHHHHhccCCHH
Confidence 3667778885 664
No 30
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=43.32 E-value=37 Score=25.74 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=29.4
Q ss_pred chHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 021544 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 163 LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
.-|++++++++|.+-.+.++....++-++.+++.++
T Consensus 2 ~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk 37 (92)
T PF05190_consen 2 FDEELDELREEYEEIEEELEELLEEIRKKLGIPSLK 37 (92)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 458999999999988888888888899999986654
No 31
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.62 E-value=1e+02 Score=31.01 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHHHHHHhhc---CHH
Q 021544 167 IKAIQQRYAG---NQE 179 (311)
Q Consensus 167 m~~Iq~kyk~---D~e 179 (311)
-+|++++||+ |++
T Consensus 224 KqEVKdE~K~sEGdPe 239 (363)
T COG1377 224 KQEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHhhccCChh
Confidence 4677778885 664
No 32
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=42.39 E-value=41 Score=30.90 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=30.5
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcC-----HHHHHHHHHHHHHH
Q 021544 153 QVESTLAMQNLQPKIKAIQQRYAGN-----QERIQLETSRLYRQ 191 (311)
Q Consensus 153 q~rs~~Km~~LqPem~~Iq~kyk~D-----~e~~q~E~~~LyKk 191 (311)
......++.+++-|+++++++.+.. +-+++.|++++.+|
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~kEkq~nrkveln~elk~l~~e 220 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIKKEKQFNRKVELNTELKKLKKE 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 3455678888999999999999863 23688888888875
No 33
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=41.98 E-value=2.1e+02 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=13.7
Q ss_pred HHHhhcCHHHHHHHHHHHHHHhCCC
Q 021544 171 QQRYAGNQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 171 q~kyk~D~e~~q~E~~~LyKk~gvn 195 (311)
+.+..+++|+-++|+.++|++.|+.
T Consensus 71 ~~e~~~~pe~e~~el~~iy~~~Gl~ 95 (213)
T PF01988_consen 71 EWELENNPEEEKEELVEIYRAKGLS 95 (213)
T ss_pred HHHHHhChHhHHHHHHHHHHHCCCC
Confidence 3344445555555666666665554
No 34
>PF05752 Calici_MSP: Calicivirus minor structural protein; InterPro: IPR008437 This family consists of minor structural proteins largely from the Caliciviridaei family of viruses, including Sapporo virus (Hu/Chiba/041413/2004/JP) and Sapporo virus (Hu/Ehime/04-1680/2004/JP). These viruses cause gastroenteritis. The function of this family is unknown.
Probab=41.70 E-value=58 Score=29.38 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCC
Q 021544 151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 151 ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvn 195 (311)
|..+.-+.|+-+++-+-.+|++++-+.+|+++++.+++-++--+|
T Consensus 21 IsnIV~qqrqv~~~~~Qn~lqq~w~~kqe~Lq~~~~dls~~La~n 65 (167)
T PF05752_consen 21 ISNIVAQQRQVDQLEKQNQLQQQWMNKQEQLQRRQQDLSRDLAVN 65 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345556667777777888888888887888998888888877666
No 35
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.29 E-value=86 Score=31.32 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=8.9
Q ss_pred HHHHHHHhhc---CHH
Q 021544 167 IKAIQQRYAG---NQE 179 (311)
Q Consensus 167 m~~Iq~kyk~---D~e 179 (311)
-+|+|++||+ |++
T Consensus 224 kqEVKdE~Ke~EGdP~ 239 (359)
T PRK05702 224 KQEVKDEHKQSEGDPE 239 (359)
T ss_pred HHHHHHHHHhccCCHH
Confidence 4677778886 664
No 36
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=38.25 E-value=92 Score=31.45 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=13.8
Q ss_pred HHHHHHHhhc---CHH---HHHHHHHHHHHH
Q 021544 167 IKAIQQRYAG---NQE---RIQLETSRLYRQ 191 (311)
Q Consensus 167 m~~Iq~kyk~---D~e---~~q~E~~~LyKk 191 (311)
-+|+|++||+ |++ |.++.++++.++
T Consensus 224 kqEvKdE~K~~EGdP~iK~r~Rq~~re~a~~ 254 (386)
T PRK12468 224 KQDIRDEFKNQEGDPHVKGRIRQQQRAMARR 254 (386)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 4566777775 664 444444444443
No 37
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=36.46 E-value=85 Score=28.34 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=43.0
Q ss_pred HHHHhchHHHHHHHHHhhcCHHHH-HHHHHHHHH----------HhCCCCCc---chHHHHHHHHHHHHHHHHHH
Q 021544 158 LAMQNLQPKIKAIQQRYAGNQERI-QLETSRLYR----------QAGVNPLA---GCLPTLATIPVWIGLYQALS 218 (311)
Q Consensus 158 ~Km~~LqPem~~Iq~kyk~D~e~~-q~E~~~LyK----------k~gvnPl~---gcLP~LiQiPIfi~lf~~Lr 218 (311)
.+..+.++++++|++|-|.|-.++ .+|..+||+ +.+.|=++ ||.-.++=+-+++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 345688999999999998875443 356666776 23444455 45567778888888888877
No 38
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=35.72 E-value=54 Score=30.38 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=10.6
Q ss_pred HhhcCHHHHHHHHHHHHHHhCCC
Q 021544 173 RYAGNQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 173 kyk~D~e~~q~E~~~LyKk~gvn 195 (311)
+.++++|+-++|+.++|+++|.+
T Consensus 74 ~i~~~pe~E~~el~~iy~~kG~~ 96 (225)
T cd02434 74 EIENYPEGEKSEMVEIYSLKGLS 96 (225)
T ss_pred HHHhCcHHHHHHHHHHHHHcCCC
Confidence 33344444444555555544433
No 39
>PRK06298 type III secretion system protein; Validated
Probab=35.51 E-value=1e+02 Score=30.76 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHHHHHHhhc---CHH---HHHHHHHHHHH
Q 021544 166 KIKAIQQRYAG---NQE---RIQLETSRLYR 190 (311)
Q Consensus 166 em~~Iq~kyk~---D~e---~~q~E~~~LyK 190 (311)
--+|+|++||+ |++ |.++.++++.+
T Consensus 217 SkqEvKdE~K~~EGdP~iK~rrR~~~re~~~ 247 (356)
T PRK06298 217 EKFEVKQEFKDTEGNPEIKGRRRQIAQEIAY 247 (356)
T ss_pred CHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34667778885 664 34444444444
No 40
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.14 E-value=1.1e+02 Score=22.71 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=20.4
Q ss_pred HHhchHHHHHHHHHhhcCHHHHHHHHHHHHH--HhCCCCC
Q 021544 160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYR--QAGVNPL 197 (311)
Q Consensus 160 m~~LqPem~~Iq~kyk~D~e~~q~E~~~LyK--k~gvnPl 197 (311)
+..+|-|.++|++...+ -++-=++++.||. -+++||+
T Consensus 16 i~tvk~en~~i~~~ve~-i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 16 INTVKKENEEISESVEK-IEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCC
Confidence 34455555555443322 1111256788888 6799996
No 41
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.68 E-value=3.1e+02 Score=24.41 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHH--------HHHHhchHHHHHHHHHhhc
Q 021544 134 AIILLTVIVKVATFPLTKKQVEST--------LAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 134 aIIl~TliVRlil~PL~ikq~rs~--------~Km~~LqPem~~Iq~kyk~ 176 (311)
+.+++.++++-+++|...+..... ....+.+-+.++++++|..
T Consensus 40 ~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 40 TLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555655566544433222 1223355566666666653
No 42
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=2e+02 Score=30.04 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHH--HHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc-----CHHHHHHHHHHHHHHhCCC-------
Q 021544 130 SYGFAIILLTVIVK--VATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQERIQLETSRLYRQAGVN------- 195 (311)
Q Consensus 130 ~wg~aIIl~TliVR--lil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~-----D~e~~q~E~~~LyKk~gvn------- 195 (311)
+||...|+..+.|- +|++|=++.-.|+.+-+...+|.--+=+++.+. +.+.....+.++-++.++.
T Consensus 56 SwWfl~iivlL~VSLv~C~lpr~~~~~ra~r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~ 135 (478)
T COG1333 56 SWWFLAIIVLLGVSLVGCSLPRFPALYRALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSV 135 (478)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHhhcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccce
Confidence 68887766666666 678888876666665554444433222222221 3333333333333322221
Q ss_pred -C------CcchHHHHHHHHHHHHHHHHHHhhhhhccccCccccccCC
Q 021544 196 -P------LAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 236 (311)
Q Consensus 196 -P------l~gcLP~LiQiPIfi~lf~~Lr~ma~~~l~~~gflW~~dL 236 (311)
- +.-.-|.+.-+-+.+.+--++-++..+|+..+. |++|=
T Consensus 136 ~i~AeKG~~~r~G~ii~HiaLliil~Gal~~~~~~Gm~~~~--~V~~G 181 (478)
T COG1333 136 SIAAEKGRFSRWGPIIFHIALLIILVGALLDFFYEGMVVGE--IVPDG 181 (478)
T ss_pred eEEeccccccchhhHHHHHHHHHHHHHHHHhhcccceeEeE--EecCC
Confidence 1 122457888888887777777664334444333 66653
No 43
>PRK09609 hypothetical protein; Provisional
Probab=32.29 E-value=4.4e+02 Score=26.14 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=38.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccCCcchHHHHHHH--HHHHH---HHhhhccHHHHHHHHHHHhchHHHHHHHHHh
Q 021544 100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILL--TVIVK---VATFPLTKKQVESTLAMQNLQPKIKAIQQRY 174 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~~~wg~aIIl~--TliVR---lil~PL~ikq~rs~~Km~~LqPem~~Iq~ky 174 (311)
-|.+.|.++..+..++.++... | ++.++.++... .++.= ...+-...+......|.+...-+++..|++|
T Consensus 54 FGPv~G~ivG~lsDLLs~li~p----G-~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~~~~ 128 (312)
T PRK09609 54 FGPIVGFFTGLLSDLISFLFVP----G-VYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQKEQY 128 (312)
T ss_pred hchHHHHHHHHHHHHHHHHhcC----C-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655421 1 34455555422 22211 1223333344455667777888888888888
Q ss_pred h
Q 021544 175 A 175 (311)
Q Consensus 175 k 175 (311)
+
T Consensus 129 ~ 129 (312)
T PRK09609 129 D 129 (312)
T ss_pred H
Confidence 5
No 44
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.93 E-value=3e+02 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhccHHH
Q 021544 136 ILLTVIVKVATFPLTKKQ 153 (311)
Q Consensus 136 Il~TliVRlil~PL~ikq 153 (311)
+++.++++-+++|...+.
T Consensus 29 liL~~lL~~~l~~pi~~~ 46 (173)
T PRK13453 29 IVLLALLKKFAWGPLKDV 46 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 45
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=30.66 E-value=1.6e+02 Score=28.41 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=25.6
Q ss_pred HHHHHHHhc---hHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 021544 155 ESTLAMQNL---QPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 155 rs~~Km~~L---qPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
-|-+|||.+ ---+-.++|-|++|+|+.++.+++=..=+|++|.-
T Consensus 22 ~NyErmQ~~gf~~~m~P~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~ 68 (271)
T TIGR00828 22 FNFERMQALGFCYAMIPAIKKLYPDDKAGRSAALKRHLEFFNTHPNL 68 (271)
T ss_pred ccHHHHhhHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCchh
Confidence 455666653 22223345568777777666665555557888753
No 46
>COG4879 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.78 E-value=1.5e+02 Score=27.84 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCcchH
Q 021544 177 NQERIQLETSRLYRQAGVNPLAGCL 201 (311)
Q Consensus 177 D~e~~q~E~~~LyKk~gvnPl~gcL 201 (311)
.++.+-.+++..|++.|+.|++|+=
T Consensus 30 sRe~~ieilk~vY~~~~IkPfrG~n 54 (243)
T COG4879 30 SRESLIEILKTVYKERGIKPFRGLN 54 (243)
T ss_pred hHHHHHHHHHHHHHHcCCCcccCCC
Confidence 4667778899999999999999854
No 47
>PHA01750 hypothetical protein
Probab=29.36 E-value=2.8e+02 Score=21.66 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 021544 180 RIQLETSRLYRQA 192 (311)
Q Consensus 180 ~~q~E~~~LyKk~ 192 (311)
.++++.+++-||-
T Consensus 60 nl~~qv~eik~k~ 72 (75)
T PHA01750 60 ELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHhh
Confidence 4666666666653
No 48
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=29.26 E-value=2.8e+02 Score=23.19 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=28.8
Q ss_pred cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhC
Q 021544 129 YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAG 193 (311)
Q Consensus 129 ~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~g 193 (311)
+||+.++++. ++-.++..|+.+.-.+...+--+-.|.++++-++..+..+ +-++..+|+|
T Consensus 14 l~p~~~~~~~-~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~----~~~~~i~kyg 73 (121)
T PF06695_consen 14 LPPWEAFLLA-FLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAE----KKSKKIEKYG 73 (121)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 4565544443 4555666666665554443332224444444443332111 2345666666
No 49
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=29.07 E-value=1.3e+02 Score=28.34 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhcccC-CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHH-hc--hHHHHHH-HHHhhc-C---H
Q 021544 108 SEAMEFVLKILKDGIDAVHV-PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ-NL--QPKIKAI-QQRYAG-N---Q 178 (311)
Q Consensus 108 ~~p~~~iL~~i~~~~~~~gl-~~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~-~L--qPem~~I-q~kyk~-D---~ 178 (311)
.+.+.|.|..+-..+=..+. ...-+++++++.++.+.+..|........ +|.+ .. .|+-+.+ +|+|++ . .
T Consensus 127 ~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l~~~~l~~~~~~~~~~~-~~~~~~~~~p~~rr~LteeEy~~q~~~eT 205 (249)
T PF10225_consen 127 RNFVKWALQLIGLVLIYFSSQDPEFAFAAIILLLLWKSLYYPISWLKRVR-RKYRRRFTSPPKRRLLTEEEYEEQGERET 205 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhheecCCCccccccccchhhcchHhH
Confidence 44555555554332211110 12466777888888888878877543222 2222 12 4444444 445554 1 2
Q ss_pred HHHHHHHHHHHHHhCCCCCc
Q 021544 179 ERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 179 e~~q~E~~~LyKk~gvnPl~ 198 (311)
+|.-+|+++.-+.-++|+|+
T Consensus 206 ~kaL~eLr~~c~sp~~~~W~ 225 (249)
T PF10225_consen 206 RKALEELREYCNSPDCNSWK 225 (249)
T ss_pred HHHHHHHHHHhCCCCCCcch
Confidence 24445555555556666664
No 50
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=28.98 E-value=2.7e+02 Score=26.22 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHH
Q 021544 136 ILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQ 172 (311)
Q Consensus 136 Il~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~ 172 (311)
++.|++.+.+-=|+.-...+.+++-.+.+-.+..+++
T Consensus 181 ~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~ 217 (281)
T PF06472_consen 181 ILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRE 217 (281)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHH
Confidence 4677778888888888888888888888777776654
No 51
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.18 E-value=4.2e+02 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHH-H-------HHHhchHHHHHHHHHhhc
Q 021544 134 AIILLTVIVKVATFPLTKKQVEST-L-------AMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 134 aIIl~TliVRlil~PL~ikq~rs~-~-------Km~~LqPem~~Iq~kyk~ 176 (311)
+.+++.++++-+++|...+-.... . .-.+.+-+.++++++|..
T Consensus 62 ~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~ 112 (204)
T PRK09174 62 TFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQ 112 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666677654433221 1 112345555666666653
No 52
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=28.10 E-value=1.6e+02 Score=27.16 Aligned_cols=48 Identities=15% Similarity=0.305 Sum_probs=32.1
Q ss_pred hhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCC
Q 021544 147 FPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 147 ~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvn 195 (311)
.|.--.....-..++.|+-|++++|+|..+ ++...+..--|+++||++
T Consensus 114 ~p~L~vA~srf~~~~~L~~el~~~k~~L~~-rK~ierAKglLM~~~g~s 161 (194)
T COG3707 114 LPILDVAVSRFEERRALRRELAKLKDRLEE-RKVIERAKGLLMKRRGLS 161 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 344444566667788888999999888776 334444445577777765
No 53
>PHA00327 minor capsid protein
Probab=26.69 E-value=1.2e+02 Score=27.49 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=26.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 021544 153 QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 153 q~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
+++..+-+++|.-+-.+.||++.+. ..|++ ++=+|+.|.||+.
T Consensus 37 aqkqNa~~~~ia~rqmafQErMSnT--A~qR~-~eDmkkAGLNpLl 79 (187)
T PHA00327 37 AQKQNATAKQIARRQMAFQERMSNT--AYQRA-MEDMKKAGLNPLL 79 (187)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhhH--HHHHH-HHHHHHcCccHHH
Confidence 5666666666666666677776652 22233 4456889999853
No 54
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=26.57 E-value=86 Score=30.09 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHh------chHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCcc
Q 021544 155 ESTLAMQN------LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAG 199 (311)
Q Consensus 155 rs~~Km~~------LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~g 199 (311)
-|-+|||. +-|.+ +|-|++|+|++++.+++=.+=+|++|.-+
T Consensus 24 ~NyErmq~~gf~~~m~P~L---~KlY~~~~e~~~~Al~rHl~ffNT~p~~~ 71 (263)
T PRK09855 24 FNYERMQAGGFTWAMLPIL---KKIYKDDKPGLSAAMKDNLEFINTHPNLV 71 (263)
T ss_pred cCHHHHhhHhHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHCCCchhh
Confidence 34456665 34444 45688888887777777666689998543
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.41 E-value=3.2e+02 Score=24.17 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 021544 132 GFAIILLTVIVKVA 145 (311)
Q Consensus 132 g~aIIl~TliVRli 145 (311)
|.++.+.-++.|+.
T Consensus 108 Gf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 108 GFALFLSLVIRRVH 121 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555544
No 56
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.33 E-value=91 Score=29.21 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=9.6
Q ss_pred cCHHHHHHHHHHHHHHhCCC
Q 021544 176 GNQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 176 ~D~e~~q~E~~~LyKk~gvn 195 (311)
+++++-++|+.++|+++|.+
T Consensus 94 ~~p~~e~~el~~iy~~~G~~ 113 (234)
T cd02433 94 KHPLEEAAELALIYRAKGLD 113 (234)
T ss_pred hCcHHHHHHHHHHHHHcCCC
Confidence 34444445555555555444
No 57
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=25.95 E-value=1e+02 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=10.8
Q ss_pred cCHHHHHHHHHHHHHHhCCCC
Q 021544 176 GNQERIQLETSRLYRQAGVNP 196 (311)
Q Consensus 176 ~D~e~~q~E~~~LyKk~gvnP 196 (311)
+++++-++|+.++|+++|++|
T Consensus 82 ~~p~~e~~el~~~~~~~G~~~ 102 (218)
T cd02432 82 EDPEAELEELADIYEERGLSP 102 (218)
T ss_pred hCcHHHHHHHHHHHHHcCCCH
Confidence 344444455555555555543
No 58
>PRK12722 transcriptional activator FlhC; Provisional
Probab=25.79 E-value=3.7e+02 Score=24.64 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=29.9
Q ss_pred HHHHHHHHHh-CCCCCcchHHH----------HHHHHHHHHHHHHHHhh
Q 021544 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSNV 220 (311)
Q Consensus 183 ~E~~~LyKk~-gvnPl~gcLP~----------LiQiPIfi~lf~~Lr~m 220 (311)
.++.+||||- |++|=+|.+|. =++--+|+.+|+.+.+.
T Consensus 38 ~rl~~Lyke~~G~spPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~~ 86 (187)
T PRK12722 38 ERLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYQFLLKT 86 (187)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcccchhhHHHHHHHHHHHHHHc
Confidence 4567799987 99998999882 26777889999888753
No 59
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=25.53 E-value=7e+02 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhCCC--------C---CCcHHHHHHhHhhcc
Q 021544 274 VLPVLLVVSQYASMELMKP--------P---QMIQLKRTHFLFSSF 308 (311)
Q Consensus 274 ILPIL~~v~~~ls~k~~~~--------~---~~dp~q~~~~~~m~~ 308 (311)
+..++..++++++++++.. + +..+.|+.|+.+|++
T Consensus 262 i~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi 307 (357)
T PRK02201 262 IVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISI 307 (357)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHH
Confidence 4556667777776654321 1 112345677777775
No 60
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=25.21 E-value=2.2e+02 Score=27.60 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHhch---HHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 021544 155 ESTLAMQNLQ---PKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 155 rs~~Km~~Lq---Pem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
-|-+|||.+- --+-.|+|-|++|+|+.++.+++=.+=+|.+|.-
T Consensus 32 ~NyErmQ~~gf~~sm~P~LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~ 78 (282)
T PRK11103 32 WNFERMQALGFCFSMVPAIRRLYPENNEARKQAIKRHLEFFNTHPYV 78 (282)
T ss_pred cCHHHHhhHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCchh
Confidence 3456666521 2222345568778777666666655557888753
No 61
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=24.85 E-value=1.5e+02 Score=27.14 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH
Q 021544 130 SYGFAIILLTVIV 142 (311)
Q Consensus 130 ~wg~aIIl~TliV 142 (311)
+|||-|++.+|++
T Consensus 35 ~yGWyil~~~I~l 47 (190)
T PF06936_consen 35 SYGWYILFGCILL 47 (190)
T ss_dssp -------------
T ss_pred HhCHHHHHHHHHH
Confidence 4555555444444
No 62
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=24.67 E-value=3.9e+02 Score=26.68 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=59.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhhcccCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc-
Q 021544 100 NGGWFGFISEAMEFVLKILKDGIDAVHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG- 176 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~~~~~gl~--~~wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~- 176 (311)
..+.++-++.-|...|+-++..+..+|.. ...|..=.+..+ -..--++..+-+|+.++.++.-+.
T Consensus 217 ~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av------------~~~vdEy~~~ykp~~Ek~k~~k~~~ 284 (366)
T KOG1532|consen 217 ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV------------DESVDEYEEEYKPEYEKKKAEKRLA 284 (366)
T ss_pred ccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH------------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677778888888888888777665531 234443333222 123346777888988887654443
Q ss_pred CHHHHHHHHHHHHHHhCCCCCcchHH
Q 021544 177 NQERIQLETSRLYRQAGVNPLAGCLP 202 (311)
Q Consensus 177 D~e~~q~E~~~LyKk~gvnPl~gcLP 202 (311)
+.++.++++.++.|.-+++++++-.+
T Consensus 285 ee~~k~k~le~l~kdm~~~~~~~d~~ 310 (366)
T KOG1532|consen 285 EEERKKKQLEKLMKDMHVSPLKNDVP 310 (366)
T ss_pred HHHhhhhhHHHHHhccCcccccCCCC
Confidence 34456677889999999999865433
No 63
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.64 E-value=93 Score=32.55 Aligned_cols=22 Identities=5% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHhchHHHHHHHHHhhc
Q 021544 155 ESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 155 rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
..++|+++|+.|+++||++.++
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDD 49 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3345899999999999988765
No 64
>PRK06771 hypothetical protein; Provisional
Probab=24.50 E-value=2.3e+02 Score=23.29 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544 131 YGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 131 wg~aIIl~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
||+-|++..+..=.+.--++-...+..++...++-.++.|.++..-
T Consensus 3 ~~ili~~~~~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi 48 (93)
T PRK06771 3 FWMIIPIAIFGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGI 48 (93)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4544444333333333333334457778888999999999888763
No 65
>PRK12860 transcriptional activator FlhC; Provisional
Probab=23.88 E-value=3.6e+02 Score=24.81 Aligned_cols=37 Identities=32% Similarity=0.537 Sum_probs=29.9
Q ss_pred HHHHHHHHHh-CCCCCcchHHH----------HHHHHHHHHHHHHHHh
Q 021544 183 LETSRLYRQA-GVNPLAGCLPT----------LATIPVWIGLYQALSN 219 (311)
Q Consensus 183 ~E~~~LyKk~-gvnPl~gcLP~----------LiQiPIfi~lf~~Lr~ 219 (311)
.++.+||||- |++|=+|.+|. =++--+|+.+|+.+++
T Consensus 38 ~rl~~Lyke~~G~SpPkG~lP~S~dWF~tw~~nihsSlf~~iY~~l~~ 85 (189)
T PRK12860 38 DRLIRLYKEVRGVSPPKGMLPFSTDWFMTWLANIHASLFYNAYRFLKN 85 (189)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCchHHHcCchhhhHHHHHHHHHHHHHh
Confidence 4568899987 99998998875 2677889999988875
No 66
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=23.15 E-value=91 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhc------CHHHHHHHHHHHHHHhCCC
Q 021544 165 PKIKAIQQRYAG------NQERIQLETSRLYRQAGVN 195 (311)
Q Consensus 165 Pem~~Iq~kyk~------D~e~~q~E~~~LyKk~gvn 195 (311)
.+++++-+.|.+ |-+++.+++.+.|+++|+-
T Consensus 17 ~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 17 EELQAILAPYIGRCLTLADLQQLADALTNYYREKGYI 53 (76)
T ss_dssp CHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCce
Confidence 367777777765 3357788999999999975
No 67
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.84 E-value=5.4e+02 Score=22.85 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHH
Q 021544 129 YSYGFAIILLTVIV 142 (311)
Q Consensus 129 ~~wg~aIIl~TliV 142 (311)
.++|+++++..+..
T Consensus 31 ~~~~l~~l~~~~~~ 44 (199)
T PF10112_consen 31 HSFLLSLLIGAVAF 44 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555444433
No 68
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=22.75 E-value=96 Score=24.41 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 021544 177 NQERIQLETSRLYRQAGVNP 196 (311)
Q Consensus 177 D~e~~q~E~~~LyKk~gvnP 196 (311)
.+++...++.++.+++|+++
T Consensus 21 e~~~~~~~i~~~~~~~Gis~ 40 (93)
T PF00816_consen 21 EREEAIAEIRELMAEYGISP 40 (93)
T ss_dssp CCHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHhCCCH
Confidence 34567788999999999885
No 69
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.67 E-value=4.8e+02 Score=22.18 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHH--------HHHhchHHHHHHHHHhhc
Q 021544 134 AIILLTVIVKVATFPLTKKQVESTL--------AMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 134 aIIl~TliVRlil~PL~ikq~rs~~--------Km~~LqPem~~Iq~kyk~ 176 (311)
..+++.++++-+++|...+-....+ .-.+.+-+.++++++|..
T Consensus 16 ~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 66 (141)
T PRK08476 16 VFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIET 66 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666766655433221 222345566666666653
No 70
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=21.88 E-value=57 Score=24.67 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCC-CcchHHHHHHHHH----HH
Q 021544 137 LLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNP-LAGCLPTLATIPV----WI 211 (311)
Q Consensus 137 l~TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnP-l~gcLP~LiQiPI----fi 211 (311)
+...+..+++.|+-.--.+.+ ..+...+...+-..+-..++||++|+.- ++|+.+.++.... .+
T Consensus 13 ~ag~~~~~~~~Pld~ik~~~q-----------~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~ 81 (95)
T PF00153_consen 13 LAGAISTLVTYPLDTIKTRMQ-----------SESPSGKQPYQGVWQCLRKIYKEEGIRGLYRGFGPSLLRSIPYTAIYF 81 (95)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-----------CCSCCCCSS-SSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHhhc-----------ccccccccccccccccccccchhhhhccccCChHHHHHHHHHHHHHHH
Confidence 445556778888866422222 0000000112234455778888888765 3577776664333 44
Q ss_pred HHHHHHHh
Q 021544 212 GLYQALSN 219 (311)
Q Consensus 212 ~lf~~Lr~ 219 (311)
++|..+++
T Consensus 82 ~~~~~~~~ 89 (95)
T PF00153_consen 82 GLYEYLKR 89 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 71
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.45 E-value=1.7e+02 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=18.6
Q ss_pred HHHHHHHHhchHHHHHHHHHhhc
Q 021544 154 VESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 154 ~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
.+..++.+++|-|+++++++.++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 67778888899999999887765
No 72
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.43 E-value=3.4e+02 Score=22.74 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=22.5
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHhchHHHHHHHHHhhc
Q 021544 139 TVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 139 TliVRlil~PL~ikq~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
|-+.|+++=-.+..+++..-+-+--+-.-+++|||+.+
T Consensus 52 sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~~~lqkRle~ 89 (104)
T PF11460_consen 52 SYLFRVVTGKMTYMQQRKDYEEAVDQLTNEELQKRLEE 89 (104)
T ss_pred HHHhhhccCCCcHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 33457776667776666655544433344567777765
No 73
>PRK12495 hypothetical protein; Provisional
Probab=20.84 E-value=1.3e+02 Score=28.50 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCHHH--HHHHHHHHHHHhCCCCCcch
Q 021544 166 KIKAIQQRYAGNQER--IQLETSRLYRQAGVNPLAGC 200 (311)
Q Consensus 166 em~~Iq~kyk~D~e~--~q~E~~~LyKk~gvnPl~gc 200 (311)
|=++|+|||..|+++ .-++|.+|..|....--.-|
T Consensus 9 EREkLREKye~d~~~R~~~~~ma~lL~~gatmsa~hC 45 (226)
T PRK12495 9 EREKLREKYEQDEQKREATERMSELLLQGATMTNAHC 45 (226)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchhhc
Confidence 447899999987653 33566676666554434445
No 74
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=20.74 E-value=4.3e+02 Score=21.77 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHH-HHhhhccHHH------HHHHHHHHhchHHHHHHHHHhhc
Q 021544 132 GFAIILLTVIVK-VATFPLTKKQ------VESTLAMQNLQPKIKAIQQRYAG 176 (311)
Q Consensus 132 g~aIIl~TliVR-lil~PL~ikq------~rs~~Km~~LqPem~~Iq~kyk~ 176 (311)
|+.+.++++++= ++++|+.-.. .+...-..-.+-++.|+.+...+
T Consensus 3 Wl~~a~l~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~~ 54 (117)
T TIGR03142 3 WIVAALLTLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLAE 54 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444444443 5666775421 11122333467777888665553
No 75
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.29 E-value=1.2e+02 Score=31.81 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhhcCHHHHHHHHHHHHHHhCCCCC
Q 021544 163 LQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPL 197 (311)
Q Consensus 163 LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl 197 (311)
++|+++.+.++-|.=+....+++.+.|+..-||-+
T Consensus 472 l~pkL~~l~~~Tr~Lq~~iE~~ISk~y~gR~Vnim 506 (507)
T PF05600_consen 472 LEPKLDALVERTRELQKQIEADISKRYKGRPVNIM 506 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecc
Confidence 34444444444444344555677778877777743
No 76
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=20.18 E-value=86 Score=24.68 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=25.1
Q ss_pred hchHHHHHHHHHhhcCHHHHHHHHHHHHHHhC---CCCCc
Q 021544 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAG---VNPLA 198 (311)
Q Consensus 162 ~LqPem~~Iq~kyk~D~e~~q~E~~~LyKk~g---vnPl~ 198 (311)
-++|+.++..-++=+.+.++++|..+. ++.+ ++|..
T Consensus 5 ~~~p~~nk~sl~~f~S~~ai~~E~~R~-~~~~~~IIHP~S 43 (77)
T PF08412_consen 5 LLQPGDNKFSLRVFGSKKAIEKEKERQ-RSSGPWIIHPFS 43 (77)
T ss_pred hhccccCHHHHHHHccHHHHHHHHHHH-hcCCCeEEcCCc
Confidence 478888888766666777777777776 4444 56755
Done!