Query 021544
Match_columns 311
No_of_seqs 234 out of 1631
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vou_A ION transport 2 domain 38.1 1.1E+02 0.0036 24.8 7.4 15 182-196 129-143 (148)
2 3blc_A Inner membrane protein 31.9 1.2 4E-05 41.8 -6.4 22 100-121 305-326 (330)
3 1v54_D Cytochrome C oxidase su 27.4 58 0.002 27.6 4.0 61 161-221 31-103 (147)
4 1e91_A Paired amphipathic heli 25.3 81 0.0028 23.8 4.2 31 165-195 12-44 (85)
5 2cr7_A Paired amphipathic heli 21.9 84 0.0029 23.5 3.6 30 166-195 16-47 (80)
6 2y69_D Cytochrome C oxidase su 21.2 87 0.003 27.1 4.0 60 162-221 54-125 (169)
7 1g1e_B SIN3A; four-helix bundl 20.0 1E+02 0.0036 23.4 3.9 28 166-193 16-45 (89)
8 2czy_A Paired amphipathic heli 18.9 1.2E+02 0.0039 22.5 3.8 30 166-195 10-41 (77)
9 3r45_C Holliday junction recog 16.8 1.1E+02 0.0038 23.2 3.2 30 168-198 17-46 (81)
10 2f05_A Paired amphipathic heli 16.3 1.2E+02 0.004 24.0 3.5 32 165-196 12-45 (105)
No 1
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=38.10 E-value=1.1e+02 Score=24.77 Aligned_cols=15 Identities=0% Similarity=-0.139 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhCCCC
Q 021544 182 QLETSRLYRQAGVNP 196 (311)
Q Consensus 182 q~E~~~LyKk~gvnP 196 (311)
.+++.+..++++.++
T Consensus 129 l~~i~~~~~~~~~~~ 143 (148)
T 3vou_A 129 LEAIEKKLAEHSRQG 143 (148)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCc
Confidence 345566666776653
No 2
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12}
Probab=31.91 E-value=1.2 Score=41.81 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHh
Q 021544 100 NGGWFGFISEAMEFVLKILKDG 121 (311)
Q Consensus 100 ~gGw~~~i~~p~~~iL~~i~~~ 121 (311)
++||+.||+.||-++|+++|..
T Consensus 305 DyGW~~fiakPlF~lL~~l~~~ 326 (330)
T 3blc_A 305 DYGWLWFISQPLLVPRGSLEHH 326 (330)
T ss_dssp HHHHHHHHTSCCCCCCCC----
T ss_pred cccCHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999863
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=27.42 E-value=58 Score=27.55 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=36.7
Q ss_pred HhchHHHHHHHHHhhcCHHHH-HHHHHHHHHHh----------CCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q 021544 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYRQA----------GVNPLAGCL-PTLATIPVWIGLYQALSNVA 221 (311)
Q Consensus 161 ~~LqPem~~Iq~kyk~D~e~~-q~E~~~LyKk~----------gvnPl~gcL-P~LiQiPIfi~lf~~Lr~ma 221 (311)
++|.|++.+|++|-|+|-.++ .+|..+||+-. +-.-++.++ -+++-+-+-+.+|..+|..+
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v 103 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 103 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356899999999999985443 34556677621 222244333 34444555666666677653
No 4
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=25.35 E-value=81 Score=23.84 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCHHHHH--HHHHHHHHHhCCC
Q 021544 165 PKIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (311)
Q Consensus 165 Pem~~Iq~kyk~D~e~~q--~E~~~LyKk~gvn 195 (311)
-=++++++++.++++..+ .++++-||+..++
T Consensus 12 ~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d 44 (85)
T 1e91_A 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLH 44 (85)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHcccc
Confidence 346888999999888655 5788999998876
No 5
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.90 E-value=84 Score=23.46 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHhCCC
Q 021544 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (311)
Q Consensus 166 em~~Iq~kyk~D~e~~q--~E~~~LyKk~gvn 195 (311)
=++++++++.++++..+ .++++-||+..++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~ 47 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 47 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCC
Confidence 46778888887776544 4677777776655
No 6
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=21.25 E-value=87 Score=27.07 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=35.9
Q ss_pred hchHHHHHHHHHhhcCHHHH-HHHHHHHHHHh----------CCCCCcchH-HHHHHHHHHHHHHHHHHhhh
Q 021544 162 NLQPKIKAIQQRYAGNQERI-QLETSRLYRQA----------GVNPLAGCL-PTLATIPVWIGLYQALSNVA 221 (311)
Q Consensus 162 ~LqPem~~Iq~kyk~D~e~~-q~E~~~LyKk~----------gvnPl~gcL-P~LiQiPIfi~lf~~Lr~ma 221 (311)
++.|++++|++|-|+|-.++ .+|..++|+-. +-+-++.++ -.++-+-+-+.+|..+|..+
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v 125 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 125 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56899999999999985443 34556677621 222244333 34444555566666667653
No 7
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=19.97 E-value=1e+02 Score=23.43 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=19.6
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHhC
Q 021544 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAG 193 (311)
Q Consensus 166 em~~Iq~kyk~D~e~~q--~E~~~LyKk~g 193 (311)
-++++|+||.++++..+ .++++-|+++.
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 46788889988877554 46677776653
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=18.88 E-value=1.2e+02 Score=22.48 Aligned_cols=30 Identities=10% Similarity=0.392 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHhCCC
Q 021544 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVN 195 (311)
Q Consensus 166 em~~Iq~kyk~D~e~~q--~E~~~LyKk~gvn 195 (311)
=++++++++.++++..+ .++++-||+..++
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~ 41 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSID 41 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 46778888888776544 4677778776655
No 9
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=16.75 E-value=1.1e+02 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=22.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhCCCCCc
Q 021544 168 KAIQQRYAGNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 168 ~~Iq~kyk~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
+.+..|.++++.+.|..|++|-.||| .|+.
T Consensus 17 ~~Ll~kLr~sr~RFQ~~Mq~lieKYn-~PFe 46 (81)
T 3r45_C 17 DQLLQKLRASRRRFQRRMQRLIEKYN-QPFE 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-SCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC
Confidence 34555666777889999999999998 4554
No 10
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=16.30 E-value=1.2e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCHHHHH--HHHHHHHHHhCCCC
Q 021544 165 PKIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (311)
Q Consensus 165 Pem~~Iq~kyk~D~e~~q--~E~~~LyKk~gvnP 196 (311)
--+++++++|.++++..+ .++++-||+..++.
T Consensus 12 ~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 12 SYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 346889999999888655 57889999888764
Done!