Query 021544
Match_columns 311
No_of_seqs 234 out of 1631
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021544.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021544hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 39.3 16 0.0012 29.2 4.6 37 183-219 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 22.1 31 0.0023 27.1 3.4 61 161-221 28-100 (144)
3 d1lvaa3 a.4.5.35 (A:511-574) C 18.5 33 0.0024 22.8 2.4 23 176-198 3-25 (64)
4 d2e50a1 d.305.1.1 (A:1-222) Pr 17.2 81 0.0059 25.7 5.2 26 152-177 27-52 (222)
5 d1ryka_ a.60.11.1 (A:) Hypothe 17.0 65 0.0047 21.8 3.8 29 166-194 39-67 (69)
6 d1qopb_ c.79.1.1 (B:) Tryptoph 14.3 69 0.005 28.1 4.2 34 163-196 20-55 (390)
7 d1j8ba_ d.222.1.1 (A:) Hypothe 12.3 59 0.0043 22.9 2.5 19 157-175 5-23 (92)
8 d2f05a1 a.59.1.1 (A:1-85) Sin3 12.2 89 0.0065 21.5 3.5 31 166-196 13-45 (85)
9 d2hepa1 a.2.21.1 (A:1-42) Hypo 11.8 1.2E+02 0.0084 18.9 3.5 27 166-192 6-37 (42)
10 d2cvba1 c.47.1.10 (A:2-188) Pr 11.4 68 0.0049 24.9 2.9 35 162-196 49-97 (187)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=39.28 E-value=16 Score=29.15 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=29.3
Q ss_pred HHHHHHHHH-hCCCCCcchHH----------HHHHHHHHHHHHHHHHh
Q 021544 183 LETSRLYRQ-AGVNPLAGCLP----------TLATIPVWIGLYQALSN 219 (311)
Q Consensus 183 ~E~~~LyKk-~gvnPl~gcLP----------~LiQiPIfi~lf~~Lr~ 219 (311)
.++.+|||| +|.+|-+|.+| .-++--+|+.+|+-+.+
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 456889998 89999998776 23677889999988765
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.11 E-value=31 Score=27.10 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=36.6
Q ss_pred HhchHHHHHHHHHhhcCHHHH-HHHHHHHHH--------HhCCCC--CcchH-HHHHHHHHHHHHHHHHHhhh
Q 021544 161 QNLQPKIKAIQQRYAGNQERI-QLETSRLYR--------QAGVNP--LAGCL-PTLATIPVWIGLYQALSNVA 221 (311)
Q Consensus 161 ~~LqPem~~Iq~kyk~D~e~~-q~E~~~LyK--------k~gvnP--l~gcL-P~LiQiPIfi~lf~~Lr~ma 221 (311)
+++.|++++|++|-|+|-.++ .+|..+||+ |.+..+ ++.++ ..++-+-+-+.+|..+|..+
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v 100 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYV 100 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578899999999999985443 355667776 222211 33333 24444445555666666544
No 3
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=18.50 E-value=33 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.1
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCc
Q 021544 176 GNQERIQLETSRLYRQAGVNPLA 198 (311)
Q Consensus 176 ~D~e~~q~E~~~LyKk~gvnPl~ 198 (311)
+|++++.+++.++|++.|..|..
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP~ 25 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPPS 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc
Confidence 35678889999999999999853
No 4
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.16 E-value=81 Score=25.69 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhcC
Q 021544 152 KQVESTLAMQNLQPKIKAIQQRYAGN 177 (311)
Q Consensus 152 kq~rs~~Km~~LqPem~~Iq~kyk~D 177 (311)
.+++...+++.+|-++.++++++...
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~~e 52 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQASEE 52 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888888888888877653
No 5
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=17.05 E-value=65 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHhCC
Q 021544 166 KIKAIQQRYAGNQERIQLETSRLYRQAGV 194 (311)
Q Consensus 166 em~~Iq~kyk~D~e~~q~E~~~LyKk~gv 194 (311)
-.-++|++|...++++++++.++.++|..
T Consensus 39 l~Gk~Q~~yG~~kd~a~~~v~~~~~r~~~ 67 (69)
T d1ryka_ 39 LVGKIQERYGYQKDQAEKEVVDWETRNEY 67 (69)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCC
Confidence 34567889998899999999999888864
No 6
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=14.28 E-value=69 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhhc--CHHHHHHHHHHHHHHhCCCC
Q 021544 163 LQPKIKAIQQRYAG--NQERIQLETSRLYRQAGVNP 196 (311)
Q Consensus 163 LqPem~~Iq~kyk~--D~e~~q~E~~~LyKk~gvnP 196 (311)
|.|-+++|.+.|.+ +.++.++|..++||.|--.|
T Consensus 20 l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grp 55 (390)
T d1qopb_ 20 LMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRP 55 (390)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC
Confidence 55666677665554 23456677888888775443
No 7
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=12.26 E-value=59 Score=22.93 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.8
Q ss_pred HHHHHhchHHHHHHHHHhh
Q 021544 157 TLAMQNLQPKIKAIQQRYA 175 (311)
Q Consensus 157 ~~Km~~LqPem~~Iq~kyk 175 (311)
.++++++|.+|+++|++.+
T Consensus 5 mkqaq~mq~~m~~~q~eL~ 23 (92)
T d1j8ba_ 5 MKQAQQMQEKMQKMQEEIA 23 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3566778888888888886
No 8
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.20 E-value=89 Score=21.52 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHhCCCC
Q 021544 166 KIKAIQQRYAGNQERIQ--LETSRLYRQAGVNP 196 (311)
Q Consensus 166 em~~Iq~kyk~D~e~~q--~E~~~LyKk~gvnP 196 (311)
=++++++++.++++..+ .++++-|+++.++.
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~ 45 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhccc
Confidence 46788999988877655 46788888876653
No 9
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=11.82 E-value=1.2e+02 Score=18.93 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcCH-----HHHHHHHHHHHHHh
Q 021544 166 KIKAIQQRYAGNQ-----ERIQLETSRLYRQA 192 (311)
Q Consensus 166 em~~Iq~kyk~D~-----e~~q~E~~~LyKk~ 192 (311)
+++.|.+-++..+ ++-.+|+++|.++|
T Consensus 6 ~i~RINeLakK~K~~gLT~~E~~EQ~~LR~eY 37 (42)
T d2hepa1 6 KIARINELAAKAKAGVITEEEKAEQQKLRQEY 37 (42)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 4555555444321 12234555666554
No 10
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=11.40 E-value=68 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.6
Q ss_pred hchHHHHHHHHHhhcC--------------HHHHHHHHHHHHHHhCCCC
Q 021544 162 NLQPKIKAIQQRYAGN--------------QERIQLETSRLYRQAGVNP 196 (311)
Q Consensus 162 ~LqPem~~Iq~kyk~D--------------~e~~q~E~~~LyKk~gvnP 196 (311)
.-.|++++++++|+++ .+.-.+++++..+++|++.
T Consensus 49 ~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~ 97 (187)
T d2cvba1 49 GSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFF 97 (187)
T ss_dssp TTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCS
T ss_pred hhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcc
Confidence 4578999999999852 2234466788888998873
Done!