BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021545
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 129/217 (59%), Gaps = 24/217 (11%)
Query: 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNT------ERDDLSGMQLSGNKVRKL 79
P + LA P L + TPI LPN+ +RDDL+G+ + GNK+RKL
Sbjct: 3 PKIFALLAKFPR--VELIPWETPIQ--YLPNISREIGADVYIKRDDLTGLGIGGNKIRKL 58
Query: 80 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 139
E+L+ DA+++GAD +IT+G + SNH +AAK L LD L+LR + L GN
Sbjct: 59 EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELK-------GN 111
Query: 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 199
L+++++G + ++ ++ + + E+L +EGR+PYVIP GG++ IGT GY+
Sbjct: 112 YLLDKIMGIETRVYDAKDSFEL--MKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVR 169
Query: 200 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
A+ EI Q + VKFD IVVA GSGGT+AGLSLG
Sbjct: 170 AVGEIATQSE-----VKFDSIVVAAGSGGTLAGLSLG 201
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 99/175 (56%), Gaps = 7/175 (4%)
Query: 62 ERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYL 121
+RDD++ + + GNK+RKLEFL+ADA+ +GAD +IT G IQSNH R A A L L C
Sbjct: 52 KRDDVTPIAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVA 111
Query: 122 ILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP 181
+L ++ GN L+ L IE+ TL ++ +G RP
Sbjct: 112 LLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLAT----RIEAQGFRP 167
Query: 182 YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
YVIPVGGS+++G GY+E+ EI QQ + G +VVA GS GT AGL++G
Sbjct: 168 YVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSSVVVASGSAGTHAGLAVG 219
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 62 ERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYL 121
+RDD++ + + GN +RKLEFL+ADA+ +GAD +IT G IQSNH R A A L L C
Sbjct: 52 KRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVA 111
Query: 122 ILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP 181
+L ++ GN L+ L IE+ TL ++ +G RP
Sbjct: 112 LLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLAT----RIEAQGFRP 167
Query: 182 YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
YVIPVGGS+++G GY+E+ EI QQ + G +VVA GS GT AGL++G
Sbjct: 168 YVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSSVVVASGSAGTHAGLAVG 219
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 62 ERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYL 121
+RDD++ + + GN +RKLEFL+ADA+ +GAD +IT G IQSNH R A A L L C
Sbjct: 52 KRDDVTPIAMGGNXLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVA 111
Query: 122 ILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP 181
+L ++ GN L+ L IE+ TL ++ +G RP
Sbjct: 112 LLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLAT----RIEAQGFRP 167
Query: 182 YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
YVIPVGGS+++G GY+E+ EI QQ + G +VVA GS GT AGL++G
Sbjct: 168 YVIPVGGSSALGAMGYVESALEIAQQCEEVVG---LSSVVVASGSAGTHAGLAVG 219
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZK|A Chain A, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|B Chain B, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|C Chain C, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|D Chain D, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
Length = 338
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 109/219 (49%), Gaps = 24/219 (10%)
Query: 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPHN--------TERDDL-SGMQLSGNKVRKLEF 81
+L P + + G PTPI L L + +R+D SG+ GNK RKLE+
Sbjct: 2 NLQRFPRYPLTFG--PTPIQP--LARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEY 57
Query: 82 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLL 141
L+ +A+AQG D +++IGGIQSN R A A +L + C L+ D +GN+
Sbjct: 58 LIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQ 117
Query: 142 VERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN----SIGTWGY 197
+ R++GA + L+ + IG E + G +PY IP G S+ +G G+
Sbjct: 118 MSRILGADVRLVP--DGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGF 175
Query: 198 IEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
E ++ E +L G KFD +VV +G T AG+ +G
Sbjct: 176 AEEVRAQEAEL-----GFKFDYVVVCSVTGSTQAGMVVG 209
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 40 FSLGHFPTPIHKWNLPNLPHN--------TERDDL-SGMQLSGNKVRKLEFLMADAVAQG 90
+ L P+PI NL L + +R+D SG+ GNK+RKLE+++ D V
Sbjct: 9 YPLTFGPSPIS--NLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD 66
Query: 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVG 147
+++IGG QSN R A A L C LI + + + + +GN+ + R++G
Sbjct: 67 YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMG 126
Query: 148 AHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-I 204
A + +I E+ IG + N L+E L G +PY IP G S + G G++ E I
Sbjct: 127 ADVRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVI 183
Query: 205 EQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
Q+++ G+KFD IVV C +G T AG+ G
Sbjct: 184 NQEVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 40 FSLGHFPTPIHKWNLPNLPHN--------TERDDL-SGMQLSGNKVRKLEFLMADAVAQG 90
+ L P+PI NL L + +R+D SG+ GNK+RKLE+++ D V
Sbjct: 9 YPLTFGPSPIS--NLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD 66
Query: 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVG 147
+++IGG QSN R A A L C LI + + + + +GN+ + R++G
Sbjct: 67 YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMG 126
Query: 148 AHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-I 204
A + +I E+ IG + N L+E L G +PY IP G S + G G++ E I
Sbjct: 127 ADVRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVI 183
Query: 205 EQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
Q+++ G+KFD IVV C +G T AG+ G
Sbjct: 184 NQEVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 40 FSLGHFPTPIHKWNLPNLPHN--------TERDDL-SGMQLSGNKVRKLEFLMADAVAQG 90
+ L P+PI NL L + +R+D SG+ GN +RKLE+++ D V
Sbjct: 9 YPLTFGPSPIS--NLNRLSQHLGSKVNVYAKREDCNSGLAFGGNTLRKLEYIVPDIVEGD 66
Query: 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGL---IGNLLVERLVG 147
+++IGG QSN R A A L C LI + + + + +GN+ + R++G
Sbjct: 67 YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMG 126
Query: 148 AHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWGYIEAIKE-I 204
A + +I E+ IG + N L+E L G +PY IP G S + G G++ E I
Sbjct: 127 ADVRVI--EDGFDIGMRKSFANALQE-LEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVI 183
Query: 205 EQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG 236
Q+++ G+KFD IVV C +G T AG+ G
Sbjct: 184 NQEVEL---GIKFDKIVVCCVTGSTTAGILAG 212
>pdb|3JQ0|A Chain A, Crystal Structure Of Susd Superfamily Protein
(Yp_001299712.1) From Bacteroides Vulgatus Atcc 8482 At
1.13 A Resolution
Length = 493
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI----------------ELISKEE 157
Y DC L L +KVL+ +DP N + ER G+ E + +
Sbjct: 362 YRYADCLLQLAXAKVLLGEDPTEEINAVRERAYGSKYFNEHKAEIAYPNDNDPEFYTDNK 421
Query: 158 YSKIGSV-TLTNILKEKLLK---EGRRPYVIPVGGSNSIGTWGYIEAIKEIEQ 206
+ K + L ILKE+L + EG+R Y I + G W Y+ EQ
Sbjct: 422 WXKPDNAGALEAILKERLREFXFEGKRWYDIRLLG------WDYVHQYSSAEQ 468
>pdb|1YQ8|A Chain A, Prd1 Vertex Protein P5
Length = 191
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 219 DIVVAC-----GSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 261
D VVAC +GGTI+ L + LG + V FS+C+D +Y
Sbjct: 134 DFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNY 181
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 173 KLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 213
K LKE RP V VGGS ++++ +I QL G G
Sbjct: 176 KALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGG 216
>pdb|1YQ5|A Chain A, Prd1 Vertex Protein P5
pdb|1YQ5|B Chain B, Prd1 Vertex Protein P5
pdb|1YQ6|A Chain A, Prd1 Vertex Protein P5
pdb|1YQ6|B Chain B, Prd1 Vertex Protein P5
pdb|1YQ6|C Chain C, Prd1 Vertex Protein P5
Length = 144
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 215 VKF--DDIVVAC-----GSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 261
VK+ D VVAC +GGTI+ L + LG + V FS+C+D +Y
Sbjct: 81 VKYGSSDFVVACPASSLTAGGTISLLIYCNVLGVVSLDVLKFSLCNDGAALSNY 134
>pdb|4AIQ|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant)
pdb|4B7O|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f5-1 Variant) Apoprotein Form
Length = 745
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 194 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL 242
T YIEAI E++ T TGG+++D V G T++ +L G +
Sbjct: 445 TGAYIEAIHELDGF--TLTGGLRYDRFKVKTHDGKTVSSSNLNPSFGVI 491
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 54 LPNLPHNTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 104
L LP+ +L G V+ ++ L ADA GAD ++TI G++ +
Sbjct: 385 LNGLPNAVSTPELQLKLEEGENVKLIDKLRADAKFDGADEVVTIDGLRVEY 435
>pdb|3LJ5|A Chain A, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|B Chain B, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|C Chain C, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|D Chain D, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|E Chain E, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|F Chain F, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|G Chain G, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|H Chain H, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|I Chain I, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|J Chain J, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|K Chain K, Full Length Bacteriophage P22 Portal Protein
pdb|3LJ5|L Chain L, Full Length Bacteriophage P22 Portal Protein
Length = 725
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 148 AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQ 207
A ++ + Y I +T T +LK+K L G ++PV G WG++E + E
Sbjct: 267 AERQIKRRRVYKSI--ITCTAVLKDKQLIAGEHIPIVPV-----FGEWGFVEDKEVYEGV 319
Query: 208 LQTGTGGVKFDDIVVACGS 226
++ G + +++++ +
Sbjct: 320 VRLTKDGQRLRNMIMSFNA 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,025
Number of Sequences: 62578
Number of extensions: 431888
Number of successful extensions: 971
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 25
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)