Query 021545
Match_columns 311
No_of_seqs 203 out of 1796
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2515 Acd 1-aminocyclopropan 100.0 1.3E-45 2.8E-50 336.7 19.1 260 31-303 2-286 (323)
2 TIGR01275 ACC_deam_rel pyridox 100.0 5.4E-41 1.2E-45 316.2 25.0 242 41-296 2-262 (311)
3 PRK03910 D-cysteine desulfhydr 100.0 6.5E-41 1.4E-45 318.5 25.4 254 32-295 3-278 (331)
4 TIGR01274 ACC_deam 1-aminocycl 100.0 2.1E-40 4.6E-45 315.7 25.2 257 31-295 1-283 (337)
5 PRK14045 1-aminocyclopropane-1 100.0 3.4E-40 7.3E-45 313.4 24.5 221 31-267 8-235 (329)
6 PRK12390 1-aminocyclopropane-1 100.0 1.4E-39 3E-44 310.0 24.5 256 32-295 3-284 (337)
7 cd06449 ACCD Aminocyclopropane 100.0 1.2E-38 2.7E-43 299.8 23.6 243 47-295 1-267 (307)
8 PLN02556 cysteine synthase/L-3 100.0 7.2E-39 1.6E-43 308.0 20.4 247 24-295 29-304 (368)
9 COG1171 IlvA Threonine dehydra 100.0 1.1E-39 2.3E-44 306.9 14.2 231 38-296 17-277 (347)
10 PRK10717 cysteine synthase A; 100.0 2E-37 4.3E-42 294.4 20.7 238 39-295 6-270 (330)
11 PLN02550 threonine dehydratase 100.0 1.6E-37 3.4E-42 311.6 17.1 230 39-296 102-359 (591)
12 cd01561 CBS_like CBS_like: Thi 100.0 6E-37 1.3E-41 286.2 19.5 229 45-296 1-249 (291)
13 COG0031 CysK Cysteine synthase 100.0 8.3E-37 1.8E-41 282.6 19.6 231 40-294 5-255 (300)
14 PRK12483 threonine dehydratase 100.0 3.6E-37 7.7E-42 306.8 17.7 231 38-296 29-287 (521)
15 TIGR01139 cysK cysteine syntha 100.0 1.7E-36 3.7E-41 284.1 20.2 230 43-296 4-252 (298)
16 PRK08526 threonine dehydratase 100.0 8.2E-37 1.8E-41 297.0 17.9 228 39-295 13-268 (403)
17 PLN00011 cysteine synthase 100.0 2E-36 4.3E-41 286.9 20.0 230 41-295 12-262 (323)
18 TIGR01124 ilvA_2Cterm threonin 100.0 7.8E-37 1.7E-41 304.0 17.9 229 39-295 10-266 (499)
19 PRK07476 eutB threonine dehydr 100.0 8.7E-37 1.9E-41 289.2 16.3 228 39-295 12-269 (322)
20 PRK11761 cysM cysteine synthas 100.0 1.6E-36 3.4E-41 284.4 17.8 231 39-296 5-249 (296)
21 cd06448 L-Ser-dehyd Serine deh 100.0 2.8E-36 6E-41 285.1 19.4 226 46-295 1-257 (316)
22 TIGR01136 cysKM cysteine synth 100.0 3E-36 6.5E-41 282.7 19.3 228 43-296 4-252 (299)
23 KOG1250 Threonine/serine dehyd 100.0 1.4E-36 3E-41 285.0 15.8 251 21-297 41-317 (457)
24 PRK06110 hypothetical protein; 100.0 2.2E-36 4.7E-41 286.5 16.2 228 39-296 14-270 (322)
25 PLN03013 cysteine synthase 100.0 1.2E-35 2.7E-40 288.4 21.2 233 39-296 116-369 (429)
26 PRK08198 threonine dehydratase 100.0 3.3E-36 7.3E-41 293.3 17.0 228 39-295 15-270 (404)
27 PRK06382 threonine dehydratase 100.0 5E-36 1.1E-40 292.2 18.0 229 38-295 17-273 (406)
28 TIGR01138 cysM cysteine syntha 100.0 8.3E-36 1.8E-40 278.7 18.7 224 43-295 5-244 (290)
29 PRK09224 threonine dehydratase 100.0 4.5E-36 9.7E-41 299.4 17.9 229 39-295 13-269 (504)
30 TIGR02079 THD1 threonine dehyd 100.0 9.7E-36 2.1E-40 290.3 17.7 230 39-296 9-269 (409)
31 cd01563 Thr-synth_1 Threonine 100.0 1.4E-35 3.1E-40 280.7 17.8 230 39-296 15-282 (324)
32 TIGR01137 cysta_beta cystathio 100.0 4.6E-35 9.9E-40 288.9 20.3 233 40-295 5-263 (454)
33 TIGR01127 ilvA_1Cterm threonin 100.0 2.1E-35 4.5E-40 285.5 16.9 221 47-296 1-249 (380)
34 PLN02970 serine racemase 100.0 3.3E-35 7.2E-40 279.1 17.9 228 39-295 20-274 (328)
35 TIGR02991 ectoine_eutB ectoine 100.0 4.3E-35 9.3E-40 277.1 18.5 228 39-295 12-269 (317)
36 PLN02565 cysteine synthase 100.0 9.5E-35 2.1E-39 275.2 20.1 232 40-296 9-261 (322)
37 PLN02356 phosphateglycerate ki 100.0 7.4E-35 1.6E-39 282.8 19.6 238 38-295 45-355 (423)
38 PRK07048 serine/threonine dehy 100.0 3.4E-35 7.4E-40 278.1 16.6 230 38-296 16-273 (321)
39 PRK06381 threonine synthase; V 100.0 1.3E-34 2.8E-39 273.9 20.1 186 44-256 13-212 (319)
40 PRK06608 threonine dehydratase 100.0 7.9E-35 1.7E-39 277.4 18.6 227 39-295 16-271 (338)
41 PRK08639 threonine dehydratase 100.0 4.2E-35 9E-40 286.9 16.1 234 38-296 17-280 (420)
42 PRK08813 threonine dehydratase 100.0 3.1E-34 6.8E-39 273.4 19.8 226 38-296 31-277 (349)
43 PRK06721 threonine synthase; R 100.0 2.7E-34 6E-39 275.2 19.3 229 39-295 21-277 (352)
44 PRK06352 threonine synthase; V 100.0 1.3E-34 2.7E-39 277.4 16.9 228 39-295 21-277 (351)
45 cd06447 D-Ser-dehyd D-Serine d 100.0 7.6E-34 1.6E-38 275.4 20.5 235 40-295 46-351 (404)
46 PRK06815 hypothetical protein; 100.0 2.8E-34 6.2E-39 271.5 17.0 228 39-295 13-269 (317)
47 PRK07334 threonine dehydratase 100.0 3.3E-34 7E-39 279.3 17.9 229 39-296 16-270 (403)
48 PRK07591 threonine synthase; V 100.0 4.8E-34 1E-38 279.4 18.9 231 39-295 82-350 (421)
49 PRK08197 threonine synthase; V 100.0 5.1E-34 1.1E-38 277.2 18.6 231 38-295 71-340 (394)
50 PRK08638 threonine dehydratase 100.0 4.1E-34 8.9E-39 272.0 17.5 229 39-296 20-276 (333)
51 PRK07409 threonine synthase; V 100.0 5E-34 1.1E-38 273.5 18.1 228 39-295 24-281 (353)
52 PRK06450 threonine synthase; V 100.0 1.7E-33 3.7E-38 268.1 21.2 234 26-293 39-300 (338)
53 cd01562 Thr-dehyd Threonine de 100.0 4.4E-34 9.5E-39 267.8 16.6 228 39-295 10-265 (304)
54 PRK02991 D-serine dehydratase; 100.0 2.4E-33 5.3E-38 274.7 21.0 240 35-295 64-374 (441)
55 PRK08329 threonine synthase; V 100.0 2E-33 4.3E-38 268.8 18.8 239 25-293 41-302 (347)
56 cd00640 Trp-synth-beta_II Tryp 100.0 7.8E-33 1.7E-37 251.8 21.3 179 47-251 1-188 (244)
57 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.7E-33 7.9E-38 272.6 19.9 241 34-296 58-370 (431)
58 PRK08206 diaminopropionate amm 100.0 2.8E-33 6E-38 272.2 18.0 232 41-295 39-330 (399)
59 PRK08246 threonine dehydratase 100.0 2.2E-33 4.8E-38 264.6 16.0 224 39-295 16-265 (310)
60 PRK06260 threonine synthase; V 100.0 5.2E-33 1.1E-37 270.3 18.0 243 25-295 45-327 (397)
61 PRK05638 threonine synthase; V 100.0 2.3E-32 4.9E-37 269.2 20.2 202 25-257 44-258 (442)
62 TIGR00260 thrC threonine synth 100.0 1.3E-32 2.9E-37 260.9 16.8 229 39-295 16-283 (328)
63 TIGR00263 trpB tryptophan synt 100.0 1.5E-31 3.2E-36 259.1 21.3 199 40-255 44-256 (385)
64 cd06446 Trp-synth_B Tryptophan 100.0 1.7E-31 3.8E-36 257.0 19.5 238 43-295 31-320 (365)
65 TIGR01747 diampropi_NH3ly diam 100.0 2.5E-31 5.5E-36 256.4 19.0 229 45-295 21-311 (376)
66 PRK13028 tryptophan synthase s 100.0 3.7E-31 8.1E-36 256.5 19.7 238 41-295 57-348 (402)
67 PRK04346 tryptophan synthase s 100.0 6.1E-31 1.3E-35 254.6 21.0 197 42-255 54-264 (397)
68 PF00291 PALP: Pyridoxal-phosp 100.0 3.1E-31 6.7E-36 247.8 17.2 231 40-296 1-267 (306)
69 TIGR03528 2_3_DAP_am_ly diamin 100.0 6.9E-31 1.5E-35 255.0 19.6 229 45-295 40-330 (396)
70 KOG1251 Serine racemase [Signa 100.0 1.1E-31 2.4E-36 238.4 12.1 223 39-290 18-268 (323)
71 TIGR01415 trpB_rel pyridoxal-p 100.0 4.7E-30 1E-34 250.4 21.2 204 40-258 62-290 (419)
72 PRK13802 bifunctional indole-3 100.0 8.2E-30 1.8E-34 260.0 22.1 214 43-271 323-554 (695)
73 PLN02618 tryptophan synthase, 100.0 4.5E-30 9.7E-35 249.2 18.5 199 39-254 58-276 (410)
74 PLN02569 threonine synthase 100.0 9.7E-30 2.1E-34 252.0 20.6 227 39-292 126-396 (484)
75 PRK12391 tryptophan synthase s 100.0 1.8E-29 3.9E-34 246.7 21.1 201 43-258 74-299 (427)
76 PRK13803 bifunctional phosphor 100.0 2.4E-29 5.2E-34 255.9 19.9 199 41-254 266-475 (610)
77 KOG1252 Cystathionine beta-syn 100.0 1.3E-30 2.8E-35 241.2 9.6 225 40-287 46-294 (362)
78 TIGR03844 cysteate_syn cysteat 99.9 7.4E-27 1.6E-31 226.9 18.5 226 41-294 57-338 (398)
79 KOG1481 Cysteine synthase [Ami 99.9 2.8E-27 6E-32 213.8 12.2 229 39-288 42-314 (391)
80 COG0133 TrpB Tryptophan syntha 99.9 2.2E-21 4.9E-26 178.5 13.8 209 42-265 52-271 (396)
81 COG0498 ThrC Threonine synthas 99.8 6.8E-20 1.5E-24 177.5 16.5 230 39-295 69-333 (411)
82 KOG1395 Tryptophan synthase be 99.7 3.2E-18 7E-23 159.3 8.4 204 42-261 118-335 (477)
83 PRK09225 threonine synthase; V 99.6 6.6E-14 1.4E-18 138.4 18.0 179 46-250 88-279 (462)
84 COG1350 Predicted alternative 99.5 4.6E-14 1E-18 130.8 12.3 199 43-257 75-299 (432)
85 cd01560 Thr-synth_2 Threonine 99.5 2.4E-13 5.3E-18 134.4 17.5 183 46-253 87-284 (460)
86 COG3048 DsdA D-serine dehydrat 99.1 7.7E-10 1.7E-14 102.2 11.7 205 33-258 65-313 (443)
87 PRK15408 autoinducer 2-binding 94.1 5.2 0.00011 38.1 17.7 159 80-250 70-242 (336)
88 COG0300 DltE Short-chain dehyd 83.5 11 0.00024 35.0 9.9 74 92-177 8-81 (265)
89 PRK12743 oxidoreductase; Provi 79.1 39 0.00084 30.1 11.8 54 93-154 5-58 (256)
90 cd01011 nicotinamidase Nicotin 79.0 6 0.00013 34.7 6.3 62 86-150 133-195 (196)
91 cd01012 YcaC_related YcaC rela 75.9 12 0.00025 31.4 7.0 62 87-151 84-146 (157)
92 PF00070 Pyr_redox: Pyridine n 73.6 16 0.00036 26.7 6.5 33 94-128 2-34 (80)
93 KOG0025 Zn2+-binding dehydroge 73.2 15 0.00032 34.9 7.3 70 79-156 148-218 (354)
94 PF00107 ADH_zinc_N: Zinc-bind 71.8 26 0.00056 27.6 7.8 38 105-153 3-40 (130)
95 PRK11609 nicotinamidase/pyrazi 71.8 23 0.0005 31.2 8.2 64 87-152 138-203 (212)
96 PTZ00331 alpha/beta hydrolase; 71.3 17 0.00036 32.4 7.1 62 87-151 142-204 (212)
97 PRK06139 short chain dehydroge 69.9 53 0.0011 31.1 10.7 54 93-154 9-62 (330)
98 PRK08862 short chain dehydroge 69.8 70 0.0015 28.3 10.9 52 93-153 8-59 (227)
99 PRK07478 short chain dehydroge 69.2 71 0.0015 28.3 10.9 32 92-125 8-39 (254)
100 PF00857 Isochorismatase: Isoc 69.2 8.3 0.00018 32.4 4.6 64 86-152 107-171 (174)
101 COG1691 NCAIR mutase (PurE)-re 68.8 31 0.00068 31.4 8.1 93 193-297 154-249 (254)
102 PTZ00142 6-phosphogluconate de 68.6 1.1E+02 0.0025 30.7 13.1 23 102-124 10-32 (470)
103 PRK05866 short chain dehydroge 68.5 66 0.0014 29.6 10.8 31 93-125 43-73 (293)
104 PRK12859 3-ketoacyl-(acyl-carr 67.7 91 0.002 27.8 11.8 31 92-123 8-39 (256)
105 PRK13886 conjugal transfer pro 66.9 1E+02 0.0022 28.2 13.7 128 103-250 18-152 (241)
106 PF01210 NAD_Gly3P_dh_N: NAD-d 66.1 8.6 0.00019 32.4 4.0 30 95-126 3-32 (157)
107 PRK07370 enoyl-(acyl carrier p 65.7 86 0.0019 28.1 10.8 33 90-123 6-39 (258)
108 TIGR03128 RuMP_HxlA 3-hexulose 65.4 92 0.002 27.0 10.8 66 82-155 68-134 (206)
109 PF05368 NmrA: NmrA-like famil 65.1 96 0.0021 27.2 11.6 45 100-153 6-50 (233)
110 PF00106 adh_short: short chai 64.8 76 0.0016 25.8 10.9 57 94-155 3-59 (167)
111 cd01013 isochorismatase Isocho 63.8 21 0.00046 31.4 6.2 62 87-151 138-200 (203)
112 TIGR01064 pyruv_kin pyruvate k 63.7 1.6E+02 0.0035 29.7 13.1 132 107-253 261-406 (473)
113 PRK12481 2-deoxy-D-gluconate 3 63.1 87 0.0019 27.8 10.3 54 90-154 8-61 (251)
114 PF03808 Glyco_tran_WecB: Glyc 61.8 89 0.0019 26.7 9.6 71 81-156 39-110 (172)
115 COG0604 Qor NADPH:quinone redu 61.6 1E+02 0.0023 29.2 10.9 50 92-153 144-193 (326)
116 PF04127 DFP: DNA / pantothena 61.5 14 0.00031 32.3 4.6 27 100-126 27-53 (185)
117 PRK12748 3-ketoacyl-(acyl-carr 61.0 1.2E+02 0.0026 26.8 11.2 32 94-125 8-40 (256)
118 PRK08085 gluconate 5-dehydroge 60.8 1.2E+02 0.0025 26.8 10.7 33 90-124 9-41 (254)
119 cd01015 CSHase N-carbamoylsarc 60.4 29 0.00064 29.6 6.4 41 87-128 110-151 (179)
120 PRK08643 acetoin reductase; Va 58.9 1.3E+02 0.0028 26.5 11.3 30 94-125 6-35 (256)
121 KOG1499 Protein arginine N-met 58.5 17 0.00037 35.0 4.9 35 218-255 61-95 (346)
122 PRK07097 gluconate 5-dehydroge 58.4 1.4E+02 0.0029 26.7 11.0 30 92-123 12-41 (265)
123 PF03808 Glyco_tran_WecB: Glyc 58.4 51 0.0011 28.2 7.5 101 105-230 13-115 (172)
124 PRK08277 D-mannonate oxidoredu 58.3 1.4E+02 0.003 26.8 10.8 31 92-124 12-42 (278)
125 COG1597 LCB5 Sphingosine kinas 58.3 85 0.0018 29.5 9.6 76 166-257 21-96 (301)
126 PRK05867 short chain dehydroge 57.4 1.4E+02 0.003 26.4 10.8 33 90-124 9-41 (253)
127 PRK05650 short chain dehydroge 57.2 1.4E+02 0.0031 26.6 11.1 30 94-125 4-33 (270)
128 cd06533 Glyco_transf_WecG_TagA 56.9 1.1E+02 0.0023 26.1 9.3 100 105-229 11-112 (171)
129 cd06324 PBP1_ABC_sugar_binding 56.4 1.6E+02 0.0035 26.9 16.5 48 75-124 41-90 (305)
130 PRK05876 short chain dehydroge 56.0 1.5E+02 0.0033 26.8 10.7 31 92-124 8-38 (275)
131 TIGR00873 gnd 6-phosphoglucona 55.7 2.3E+02 0.005 28.5 13.5 23 102-124 8-30 (467)
132 PRK06505 enoyl-(acyl carrier p 54.9 1.6E+02 0.0035 26.7 10.7 32 92-124 9-41 (271)
133 PLN02621 nicotinamidase 54.8 38 0.00082 29.6 6.2 62 87-151 123-185 (197)
134 PRK07984 enoyl-(acyl carrier p 54.7 1.6E+02 0.0034 26.7 10.5 32 92-124 8-40 (262)
135 PRK08340 glucose-1-dehydrogena 53.3 1.6E+02 0.0035 26.0 10.5 29 94-124 4-32 (259)
136 PRK08227 autoinducer 2 aldolas 53.2 44 0.00095 31.1 6.5 76 79-155 96-179 (264)
137 TIGR03366 HpnZ_proposed putati 53.1 65 0.0014 29.3 7.8 49 92-152 122-170 (280)
138 PRK07109 short chain dehydroge 52.7 2E+02 0.0044 27.0 15.0 54 93-155 11-64 (334)
139 PRK08159 enoyl-(acyl carrier p 52.6 1.6E+02 0.0034 26.7 10.2 31 92-123 12-43 (272)
140 PRK08690 enoyl-(acyl carrier p 52.4 1.7E+02 0.0038 26.1 10.5 31 92-123 8-39 (261)
141 PF02527 GidB: rRNA small subu 52.1 15 0.00033 32.1 3.2 44 220-265 51-94 (184)
142 TIGR02822 adh_fam_2 zinc-bindi 52.1 50 0.0011 31.0 7.0 48 92-152 167-214 (329)
143 TIGR03702 lip_kinase_YegS lipi 52.1 35 0.00076 31.7 5.8 41 217-258 53-94 (293)
144 PLN02263 serine decarboxylase 52.0 2.1E+02 0.0046 28.9 11.6 55 92-156 154-208 (470)
145 PRK07533 enoyl-(acyl carrier p 51.7 1.8E+02 0.0038 26.0 10.7 35 90-125 10-45 (258)
146 PRK06124 gluconate 5-dehydroge 51.5 1.7E+02 0.0037 25.7 10.8 32 92-125 13-44 (256)
147 TIGR01832 kduD 2-deoxy-D-gluco 51.4 1.7E+02 0.0036 25.6 10.6 53 92-155 7-59 (248)
148 PRK08063 enoyl-(acyl carrier p 51.4 1.7E+02 0.0036 25.6 11.6 29 94-123 7-35 (250)
149 PRK07523 gluconate 5-dehydroge 50.3 1.8E+02 0.0039 25.6 11.3 56 90-154 10-65 (255)
150 TIGR01162 purE phosphoribosyla 49.9 55 0.0012 28.0 6.1 57 202-266 43-99 (156)
151 PF04989 CmcI: Cephalosporin h 49.3 54 0.0012 29.3 6.3 46 200-252 23-69 (206)
152 cd08197 DOIS 2-deoxy-scyllo-in 49.2 2.1E+02 0.0046 27.6 10.9 11 219-229 86-96 (355)
153 PRK08217 fabG 3-ketoacyl-(acyl 49.2 1.8E+02 0.0039 25.3 10.9 31 92-124 7-37 (253)
154 PRK13656 trans-2-enoyl-CoA red 49.2 2.4E+02 0.0051 27.9 11.1 41 178-227 102-142 (398)
155 PRK06947 glucose-1-dehydrogena 49.1 1.8E+02 0.0039 25.4 11.3 56 93-155 4-59 (248)
156 PRK06128 oxidoreductase; Provi 48.8 2.1E+02 0.0047 26.1 10.6 58 90-154 55-112 (300)
157 KOG2960 Protein involved in th 48.4 13 0.00029 33.7 2.2 71 217-289 77-161 (328)
158 TIGR00511 ribulose_e2b2 ribose 48.1 60 0.0013 30.6 6.8 57 92-156 117-175 (301)
159 PRK08589 short chain dehydroge 48.1 2.1E+02 0.0045 25.7 10.8 53 92-154 8-60 (272)
160 PRK09880 L-idonate 5-dehydroge 48.0 73 0.0016 29.9 7.4 49 92-152 171-219 (343)
161 cd06312 PBP1_ABC_sugar_binding 47.9 2E+02 0.0043 25.5 17.1 206 75-306 42-262 (271)
162 TIGR03614 RutB pyrimidine util 47.8 48 0.001 29.6 5.8 41 87-127 147-187 (226)
163 PRK06949 short chain dehydroge 47.8 1.9E+02 0.0042 25.3 10.7 32 93-125 11-42 (258)
164 TIGR01316 gltA glutamate synth 47.6 71 0.0015 31.6 7.5 56 92-152 273-328 (449)
165 PRK15395 methyl-galactoside AB 47.4 2.4E+02 0.0052 26.3 17.8 160 81-252 72-260 (330)
166 PF00107 ADH_zinc_N: Zinc-bind 47.3 34 0.00074 26.9 4.4 86 140-253 7-92 (130)
167 PRK06701 short chain dehydroge 47.2 2.3E+02 0.0049 25.9 11.5 32 92-125 48-79 (290)
168 PRK07890 short chain dehydroge 47.2 2E+02 0.0043 25.2 10.7 32 92-125 7-38 (258)
169 PRK08594 enoyl-(acyl carrier p 47.1 2.1E+02 0.0046 25.5 10.4 34 90-124 7-41 (257)
170 PRK05557 fabG 3-ketoacyl-(acyl 46.7 1.9E+02 0.0041 24.9 11.5 32 93-125 7-38 (248)
171 TIGR02825 B4_12hDH leukotriene 46.6 53 0.0011 30.4 6.2 49 92-152 140-188 (325)
172 PF11814 DUF3335: Peptidase_C3 46.4 59 0.0013 29.1 6.0 40 89-128 40-79 (207)
173 cd08294 leukotriene_B4_DH_like 46.2 58 0.0013 29.9 6.4 49 92-152 145-193 (329)
174 cd08230 glucose_DH Glucose deh 46.1 73 0.0016 30.0 7.1 50 92-151 174-223 (355)
175 PRK13394 3-hydroxybutyrate deh 45.3 2.1E+02 0.0046 25.1 13.9 57 90-155 7-63 (262)
176 cd02202 FtsZ_type2 FtsZ is a G 45.2 77 0.0017 30.6 7.1 54 199-254 81-139 (349)
177 cd01014 nicotinamidase_related 44.9 60 0.0013 27.0 5.7 41 87-127 95-135 (155)
178 PF07279 DUF1442: Protein of u 44.8 64 0.0014 29.1 6.0 43 86-128 35-81 (218)
179 PRK06181 short chain dehydroge 44.8 2.2E+02 0.0048 25.1 11.1 30 94-125 5-34 (263)
180 PRK08535 translation initiatio 44.8 71 0.0015 30.3 6.7 57 92-156 122-180 (310)
181 PRK08335 translation initiatio 44.6 1.4E+02 0.0029 28.0 8.4 57 92-156 111-169 (275)
182 PRK08936 glucose-1-dehydrogena 44.4 2.3E+02 0.0049 25.1 11.0 55 92-154 9-63 (261)
183 cd08205 RuBisCO_IV_RLP Ribulos 44.2 3.1E+02 0.0067 26.6 16.9 67 61-127 163-234 (367)
184 cd04726 KGPDC_HPS 3-Keto-L-gul 43.9 1.7E+02 0.0037 25.0 8.7 66 81-154 68-133 (202)
185 cd06301 PBP1_rhizopine_binding 43.7 2.3E+02 0.0049 24.9 18.1 163 78-252 44-220 (272)
186 TIGR00670 asp_carb_tr aspartat 43.6 89 0.0019 29.5 7.2 56 93-154 152-208 (301)
187 cd08295 double_bond_reductase_ 43.6 63 0.0014 30.1 6.2 49 92-152 153-202 (338)
188 KOG0538 Glycolate oxidase [Ene 43.5 1.5E+02 0.0033 28.4 8.4 40 108-155 268-308 (363)
189 PF13407 Peripla_BP_4: Peripla 43.4 2.3E+02 0.0049 24.8 13.3 165 73-251 38-217 (257)
190 COG0159 TrpA Tryptophan syntha 43.2 2.8E+02 0.0061 25.8 11.7 49 78-127 110-158 (265)
191 PRK08278 short chain dehydroge 43.2 2.2E+02 0.0048 25.6 9.7 32 93-126 9-40 (273)
192 PRK09424 pntA NAD(P) transhydr 42.2 82 0.0018 32.1 7.0 49 92-153 166-214 (509)
193 PLN02350 phosphogluconate dehy 42.2 3.9E+02 0.0084 27.2 13.0 22 102-123 15-36 (493)
194 PF04198 Sugar-bind: Putative 42.1 1.5E+02 0.0032 27.1 8.2 85 179-271 20-109 (255)
195 PRK06202 hypothetical protein; 41.9 32 0.0007 30.5 3.8 38 218-255 63-100 (232)
196 PRK12937 short chain dehydroge 41.7 2.3E+02 0.005 24.5 10.7 55 93-155 8-62 (245)
197 TIGR00561 pntA NAD(P) transhyd 41.7 1.7E+02 0.0037 29.8 9.2 50 92-154 165-214 (511)
198 cd06317 PBP1_ABC_sugar_binding 41.7 2.4E+02 0.0052 24.7 17.8 168 75-253 41-224 (275)
199 cd00401 AdoHcyase S-adenosyl-L 41.5 78 0.0017 31.4 6.6 47 92-151 203-249 (413)
200 PRK11440 putative hydrolase; P 41.4 67 0.0015 27.6 5.6 41 87-127 117-157 (188)
201 PRK08416 7-alpha-hydroxysteroi 41.3 2.6E+02 0.0055 24.8 11.1 31 92-124 10-40 (260)
202 PRK06997 enoyl-(acyl carrier p 41.1 2.6E+02 0.0057 24.9 10.2 31 92-123 8-39 (260)
203 COG1167 ARO8 Transcriptional r 41.0 1.8E+02 0.004 28.9 9.4 74 106-193 166-241 (459)
204 PRK07454 short chain dehydroge 41.0 2.4E+02 0.0052 24.5 11.0 30 94-125 10-39 (241)
205 cd08195 DHQS Dehydroquinate sy 40.7 2.1E+02 0.0045 27.3 9.3 31 219-251 87-119 (345)
206 PF00465 Fe-ADH: Iron-containi 40.7 57 0.0012 31.3 5.5 99 141-254 16-132 (366)
207 PRK07832 short chain dehydroge 40.6 2.7E+02 0.0058 24.9 10.7 29 94-124 4-32 (272)
208 TIGR03201 dearomat_had 6-hydro 40.6 71 0.0015 30.0 6.1 48 92-152 168-215 (349)
209 PRK12779 putative bifunctional 40.4 1.2E+02 0.0025 33.5 8.3 97 92-227 307-403 (944)
210 PF00185 OTCace: Aspartate/orn 40.4 46 0.001 28.1 4.3 33 94-126 5-37 (158)
211 PF13478 XdhC_C: XdhC Rossmann 40.4 31 0.00067 28.6 3.2 30 95-126 2-31 (136)
212 PLN02564 6-phosphofructokinase 40.2 4.1E+02 0.0089 27.0 11.5 49 79-127 165-215 (484)
213 COG1609 PurR Transcriptional r 39.9 3.3E+02 0.0071 25.7 17.0 160 78-252 102-275 (333)
214 PRK12831 putative oxidoreducta 39.7 1.1E+02 0.0024 30.5 7.5 56 92-152 282-337 (464)
215 PF00731 AIRC: AIR carboxylase 39.7 99 0.0022 26.2 6.1 39 216-258 55-93 (150)
216 PRK08303 short chain dehydroge 39.6 3.1E+02 0.0068 25.4 11.6 32 92-125 10-41 (305)
217 PF03853 YjeF_N: YjeF-related 39.5 83 0.0018 26.8 5.8 59 92-153 27-87 (169)
218 TIGR00696 wecB_tagA_cpsF bacte 39.4 2.2E+02 0.0048 24.6 8.5 98 105-228 13-112 (177)
219 cd06450 DOPA_deC_like DOPA dec 39.1 1.5E+02 0.0033 27.4 8.1 54 93-155 60-124 (345)
220 TIGR00524 eIF-2B_rel eIF-2B al 39.1 65 0.0014 30.5 5.5 59 92-156 120-187 (303)
221 PRK07677 short chain dehydroge 39.1 2.7E+02 0.0058 24.4 10.7 31 93-125 4-34 (252)
222 cd08187 BDH Butanol dehydrogen 39.0 2.9E+02 0.0062 26.7 10.1 11 242-252 127-137 (382)
223 PRK09134 short chain dehydroge 39.0 2.7E+02 0.0059 24.5 11.4 32 92-125 11-42 (258)
224 PRK07806 short chain dehydroge 38.9 2.6E+02 0.0057 24.3 11.4 32 92-125 8-39 (248)
225 PRK07814 short chain dehydroge 38.8 2.7E+02 0.006 24.7 9.5 32 92-125 12-43 (263)
226 cd08291 ETR_like_1 2-enoyl thi 38.7 1.4E+02 0.003 27.6 7.6 52 90-153 143-194 (324)
227 COG0623 FabI Enoyl-[acyl-carri 38.6 2.4E+02 0.0052 26.0 8.7 43 229-271 122-178 (259)
228 PLN02743 nicotinamidase 38.2 59 0.0013 29.7 4.9 40 86-126 146-194 (239)
229 PRK07109 short chain dehydroge 38.2 2.4E+02 0.0052 26.5 9.3 71 141-227 26-96 (334)
230 PF00890 FAD_binding_2: FAD bi 37.9 44 0.00095 32.3 4.3 29 96-126 4-32 (417)
231 PRK13982 bifunctional SbtC-lik 37.9 49 0.0011 33.4 4.7 35 89-123 255-303 (475)
232 PF13649 Methyltransf_25: Meth 37.8 36 0.00077 25.8 3.0 33 222-255 4-36 (101)
233 PRK07062 short chain dehydroge 37.7 2.9E+02 0.0063 24.4 10.6 32 92-125 10-41 (265)
234 cd08296 CAD_like Cinnamyl alco 37.7 1.2E+02 0.0027 28.1 7.2 48 92-152 165-212 (333)
235 PRK07774 short chain dehydroge 37.5 2.8E+02 0.006 24.1 11.4 32 92-125 8-39 (250)
236 PF00282 Pyridoxal_deC: Pyrido 37.3 2.7E+02 0.0059 26.9 9.7 57 92-156 105-171 (373)
237 PRK07666 fabG 3-ketoacyl-(acyl 37.2 2.8E+02 0.006 24.0 9.2 31 93-125 10-40 (239)
238 PF13561 adh_short_C2: Enoyl-( 37.2 1.6E+02 0.0035 25.8 7.5 49 100-154 4-52 (241)
239 PRK09250 fructose-bisphosphate 37.0 1.2E+02 0.0027 29.3 7.0 77 79-155 148-238 (348)
240 PRK08226 short chain dehydroge 37.0 2.8E+02 0.0062 24.4 9.2 30 93-124 9-38 (263)
241 PRK13054 lipid kinase; Reviewe 36.9 82 0.0018 29.3 5.8 41 217-258 57-98 (300)
242 PF06415 iPGM_N: BPG-independe 36.8 77 0.0017 28.7 5.3 50 78-127 15-73 (223)
243 PF13460 NAD_binding_10: NADH( 36.8 2.4E+02 0.0053 23.3 10.6 30 97-127 4-33 (183)
244 PRK12935 acetoacetyl-CoA reduc 36.7 2.8E+02 0.0062 24.1 11.2 55 93-155 9-63 (247)
245 PF13450 NAD_binding_8: NAD(P) 36.7 62 0.0014 23.1 3.9 24 102-125 5-28 (68)
246 cd00431 cysteine_hydrolases Cy 36.6 96 0.0021 25.5 5.7 40 87-127 106-146 (161)
247 PF02737 3HCDH_N: 3-hydroxyacy 36.6 60 0.0013 28.0 4.5 27 97-125 5-31 (180)
248 cd06326 PBP1_STKc_like Type I 36.4 3.4E+02 0.0073 24.8 17.4 155 81-256 58-230 (336)
249 PRK07791 short chain dehydroge 36.3 3.3E+02 0.0072 24.7 11.9 33 90-124 6-38 (286)
250 KOG1238 Glucose dehydrogenase/ 36.3 49 0.0011 34.5 4.4 69 215-288 56-141 (623)
251 TIGR01357 aroB 3-dehydroquinat 36.1 3E+02 0.0065 26.1 9.7 31 219-251 83-115 (344)
252 cd04509 PBP1_ABC_transporter_G 36.1 2.9E+02 0.0064 24.0 15.9 158 82-257 58-233 (299)
253 PF05185 PRMT5: PRMT5 arginine 36.1 72 0.0016 31.9 5.5 41 218-258 189-229 (448)
254 KOG1198 Zinc-binding oxidoredu 36.0 2.2E+02 0.0047 27.4 8.7 49 92-152 159-207 (347)
255 cd08239 THR_DH_like L-threonin 36.0 1.4E+02 0.0031 27.6 7.4 49 92-152 165-213 (339)
256 PF06506 PrpR_N: Propionate ca 36.0 58 0.0013 27.8 4.3 39 78-124 113-151 (176)
257 PRK03692 putative UDP-N-acetyl 35.8 3.4E+02 0.0074 24.7 9.6 20 103-122 92-111 (243)
258 cd08301 alcohol_DH_plants Plan 35.6 1.2E+02 0.0025 28.8 6.8 49 92-152 189-237 (369)
259 TIGR03669 urea_ABC_arch urea A 35.6 4E+02 0.0088 25.5 13.3 141 88-249 66-220 (374)
260 PF00732 GMC_oxred_N: GMC oxid 35.3 31 0.00067 31.6 2.6 36 217-256 1-37 (296)
261 PRK12744 short chain dehydroge 35.3 3.1E+02 0.0068 24.1 11.9 30 93-124 11-40 (257)
262 cd06356 PBP1_Amide_Urea_BP_lik 35.3 3.7E+02 0.008 24.9 13.4 159 62-248 45-219 (334)
263 cd08300 alcohol_DH_class_III c 35.2 1.2E+02 0.0026 28.8 6.8 49 92-152 188-236 (368)
264 PRK07063 short chain dehydroge 35.1 3.2E+02 0.0068 24.1 10.9 31 92-124 9-39 (260)
265 TIGR00872 gnd_rel 6-phosphoglu 35.0 3.7E+02 0.008 24.9 14.8 47 251-301 134-180 (298)
266 KOG1201 Hydroxysteroid 17-beta 35.0 2.8E+02 0.0061 26.3 8.9 71 92-177 40-111 (300)
267 PRK06603 enoyl-(acyl carrier p 34.8 3.3E+02 0.0072 24.2 10.2 30 93-123 11-41 (260)
268 PLN03032 serine decarboxylase; 34.7 3.5E+02 0.0076 26.3 9.9 53 93-155 88-140 (374)
269 PRK00861 putative lipid kinase 34.7 1E+02 0.0022 28.6 6.0 39 216-258 57-95 (300)
270 PRK06847 hypothetical protein; 34.7 58 0.0013 30.8 4.5 30 93-124 6-35 (375)
271 cd08289 MDR_yhfp_like Yhfp put 34.7 1.2E+02 0.0025 27.8 6.5 48 92-151 148-195 (326)
272 PRK10309 galactitol-1-phosphat 34.6 1.3E+02 0.0028 28.1 6.8 49 92-152 162-210 (347)
273 PRK09257 aromatic amino acid a 34.3 2.6E+02 0.0057 26.7 9.1 17 138-154 132-148 (396)
274 PRK05872 short chain dehydroge 34.2 3.6E+02 0.0079 24.5 9.9 31 92-124 11-41 (296)
275 COG2303 BetA Choline dehydroge 34.1 58 0.0013 33.3 4.6 37 215-255 6-42 (542)
276 cd06319 PBP1_ABC_sugar_binding 34.1 3.2E+02 0.007 23.9 15.2 43 81-124 46-88 (277)
277 KOG0780 Signal recognition par 33.9 4.9E+02 0.011 26.0 15.0 151 72-240 68-239 (483)
278 PRK08993 2-deoxy-D-gluconate 3 33.8 2.1E+02 0.0046 25.2 7.8 54 90-154 10-63 (253)
279 PRK05653 fabG 3-ketoacyl-(acyl 33.7 3.1E+02 0.0066 23.5 12.1 55 93-155 7-61 (246)
280 cd06309 PBP1_YtfQ_like Peripla 33.5 3.4E+02 0.0073 23.9 16.5 165 77-252 42-223 (273)
281 cd08281 liver_ADH_like1 Zinc-d 33.5 1.2E+02 0.0026 28.8 6.5 49 92-152 193-241 (371)
282 PRK09545 znuA high-affinity zi 33.5 4.1E+02 0.0089 24.9 11.2 93 107-209 212-307 (311)
283 PRK06197 short chain dehydroge 33.4 3.8E+02 0.0082 24.5 10.3 32 92-125 18-49 (306)
284 PRK10624 L-1,2-propanediol oxi 33.3 2.4E+02 0.0053 27.2 8.6 52 168-229 48-99 (382)
285 PLN03154 putative allyl alcoho 33.2 1E+02 0.0023 29.1 6.0 49 92-152 160-209 (348)
286 cd08270 MDR4 Medium chain dehy 33.1 2E+02 0.0044 25.8 7.7 47 92-150 134-180 (305)
287 PRK07985 oxidoreductase; Provi 33.1 3.8E+02 0.0083 24.5 10.7 30 92-123 51-80 (294)
288 PLN02740 Alcohol dehydrogenase 33.0 1.4E+02 0.0029 28.6 6.8 49 92-152 200-248 (381)
289 cd08256 Zn_ADH2 Alcohol dehydr 32.8 1.6E+02 0.0034 27.5 7.1 49 92-152 176-224 (350)
290 PRK06172 short chain dehydroge 32.5 3.4E+02 0.0074 23.7 11.6 55 93-155 9-63 (253)
291 PRK06935 2-deoxy-D-gluconate 3 32.5 3.5E+02 0.0075 23.8 11.5 55 90-154 15-69 (258)
292 PRK05993 short chain dehydroge 32.4 3.7E+02 0.008 24.1 14.3 31 94-125 7-37 (277)
293 cd01075 NAD_bind_Leu_Phe_Val_D 32.4 1.6E+02 0.0036 25.7 6.7 44 77-122 7-57 (200)
294 PRK13018 cell division protein 32.2 87 0.0019 30.7 5.3 46 200-253 102-152 (378)
295 PRK05599 hypothetical protein; 32.1 2.7E+02 0.0059 24.5 8.2 28 94-124 4-31 (246)
296 cd08189 Fe-ADH5 Iron-containin 32.0 4.7E+02 0.01 25.1 11.3 24 201-229 72-95 (374)
297 PF12831 FAD_oxidored: FAD dep 31.9 59 0.0013 32.0 4.1 30 95-126 3-32 (428)
298 TIGR02964 xanthine_xdhC xanthi 31.9 67 0.0015 29.3 4.2 32 92-125 101-132 (246)
299 TIGR02818 adh_III_F_hyde S-(hy 31.9 1.4E+02 0.003 28.4 6.6 49 92-152 187-235 (368)
300 PRK13337 putative lipid kinase 31.7 1.2E+02 0.0026 28.2 6.1 39 217-257 58-96 (304)
301 PRK07523 gluconate 5-dehydroge 31.6 3.6E+02 0.0077 23.6 9.2 70 142-227 29-98 (255)
302 COG0337 AroB 3-dehydroquinate 31.6 3.5E+02 0.0077 26.3 9.2 67 168-241 50-120 (360)
303 cd08292 ETR_like_2 2-enoyl thi 31.5 2E+02 0.0044 26.1 7.5 48 92-151 141-188 (324)
304 PRK07201 short chain dehydroge 31.4 4.4E+02 0.0095 27.0 10.7 32 93-125 373-404 (657)
305 TIGR02819 fdhA_non_GSH formald 31.4 1.6E+02 0.0034 28.6 7.0 48 92-151 187-234 (393)
306 PRK07231 fabG 3-ketoacyl-(acyl 31.2 3.5E+02 0.0076 23.4 10.7 32 92-125 7-38 (251)
307 PF01041 DegT_DnrJ_EryC1: DegT 31.1 2.5E+02 0.0054 26.7 8.2 69 73-155 24-94 (363)
308 cd08193 HVD 5-hydroxyvalerate 31.1 3E+02 0.0064 26.5 8.8 24 201-229 72-95 (376)
309 KOG1205 Predicted dehydrogenas 31.0 4.5E+02 0.0098 24.6 10.7 37 89-127 11-47 (282)
310 COG1751 Uncharacterized conser 30.9 3.5E+02 0.0075 23.3 7.9 50 74-125 11-60 (186)
311 cd05280 MDR_yhdh_yhfp Yhdh and 30.9 2.7E+02 0.0058 25.2 8.2 48 92-151 148-195 (325)
312 PRK12826 3-ketoacyl-(acyl-carr 30.7 3.5E+02 0.0076 23.3 11.8 54 93-154 8-61 (251)
313 PRK06182 short chain dehydroge 30.7 3.9E+02 0.0084 23.8 14.0 31 94-125 6-36 (273)
314 PRK14057 epimerase; Provisiona 30.5 2.4E+02 0.0052 26.1 7.5 63 114-185 189-251 (254)
315 PRK09242 tropinone reductase; 30.5 3.7E+02 0.0081 23.5 9.3 72 140-227 26-99 (257)
316 COG3155 ElbB Uncharacterized p 30.5 1.6E+02 0.0034 25.6 5.8 66 231-296 118-196 (217)
317 PLN02834 3-dehydroquinate synt 30.4 4.6E+02 0.0099 26.1 10.1 91 146-251 99-197 (433)
318 PRK07326 short chain dehydroge 30.4 3.5E+02 0.0077 23.2 10.6 30 94-124 9-38 (237)
319 cd08243 quinone_oxidoreductase 30.3 1.5E+02 0.0032 26.7 6.3 49 92-152 144-192 (320)
320 TIGR00521 coaBC_dfp phosphopan 30.3 79 0.0017 31.0 4.6 27 100-126 209-235 (390)
321 PRK08415 enoyl-(acyl carrier p 30.3 4.2E+02 0.009 24.0 10.4 34 90-124 5-39 (274)
322 PRK06114 short chain dehydroge 30.3 3.6E+02 0.0078 23.7 8.7 71 140-225 25-95 (254)
323 PRK08334 translation initiatio 30.3 1.2E+02 0.0026 29.5 5.8 24 105-128 180-203 (356)
324 TIGR02415 23BDH acetoin reduct 30.2 3.7E+02 0.008 23.4 9.3 53 94-154 3-55 (254)
325 PRK07035 short chain dehydroge 30.1 3.7E+02 0.0081 23.4 9.2 32 92-125 10-41 (252)
326 cd08550 GlyDH-like Glycerol_de 30.1 2.9E+02 0.0062 26.3 8.5 16 108-123 14-29 (349)
327 cd08274 MDR9 Medium chain dehy 29.9 2.1E+02 0.0045 26.4 7.4 47 92-151 179-225 (350)
328 cd06283 PBP1_RegR_EndR_KdgR_li 29.9 3.7E+02 0.008 23.3 19.5 34 216-251 178-215 (267)
329 PRK12745 3-ketoacyl-(acyl-carr 29.9 3.4E+02 0.0074 23.6 8.5 54 94-154 5-58 (256)
330 PF01262 AlaDh_PNT_C: Alanine 29.8 1.8E+02 0.0039 24.5 6.3 49 93-154 22-70 (168)
331 cd08192 Fe-ADH7 Iron-containin 29.8 3E+02 0.0065 26.4 8.6 24 201-229 70-93 (370)
332 cd08233 butanediol_DH_like (2R 29.8 2.1E+02 0.0045 26.7 7.4 49 92-152 174-222 (351)
333 cd08181 PPD-like 1,3-propanedi 29.7 2.6E+02 0.0057 26.7 8.1 24 201-229 72-95 (357)
334 cd06375 PBP1_mGluR_groupII Lig 29.6 5.6E+02 0.012 25.3 11.8 142 96-253 109-268 (458)
335 cd08293 PTGR2 Prostaglandin re 29.5 1.5E+02 0.0032 27.5 6.3 49 92-152 156-206 (345)
336 PF02887 PK_C: Pyruvate kinase 29.5 2.1E+02 0.0046 22.5 6.3 45 199-254 6-50 (117)
337 cd01714 ETF_beta The electron 29.4 3.9E+02 0.0084 23.4 9.1 38 217-254 109-150 (202)
338 COG1184 GCD2 Translation initi 29.3 1.6E+02 0.0036 27.9 6.4 59 92-156 121-179 (301)
339 PRK05854 short chain dehydroge 29.3 4.6E+02 0.01 24.2 10.3 32 92-125 16-47 (313)
340 KOG2862 Alanine-glyoxylate ami 29.3 1.7E+02 0.0037 28.2 6.4 47 140-190 108-154 (385)
341 TIGR03206 benzo_BadH 2-hydroxy 29.2 3.7E+02 0.0081 23.2 8.6 70 140-225 20-89 (250)
342 PRK08306 dipicolinate synthase 29.1 3.1E+02 0.0067 25.6 8.3 47 92-151 153-199 (296)
343 cd06268 PBP1_ABC_transporter_L 29.0 3.9E+02 0.0084 23.2 15.8 159 81-257 57-230 (298)
344 KOG1197 Predicted quinone oxid 28.9 2.1E+02 0.0045 27.0 6.7 65 79-155 134-200 (336)
345 PRK13394 3-hydroxybutyrate deh 28.9 3.6E+02 0.0079 23.5 8.5 72 140-227 24-95 (262)
346 PF00091 Tubulin: Tubulin/FtsZ 28.8 2.3E+02 0.0049 25.0 7.0 72 215-288 122-201 (216)
347 PLN02178 cinnamyl-alcohol dehy 28.8 1.7E+02 0.0036 28.1 6.6 49 92-152 180-228 (375)
348 PRK08213 gluconate 5-dehydroge 28.8 3.8E+02 0.0082 23.6 8.6 70 140-225 29-98 (259)
349 TIGR02637 RhaS rhamnose ABC tr 28.5 4.4E+02 0.0096 23.7 18.2 163 77-250 43-219 (302)
350 COG1335 PncA Amidases related 28.4 1.4E+02 0.0029 25.8 5.5 40 88-128 130-170 (205)
351 CHL00194 ycf39 Ycf39; Provisio 28.3 1.8E+02 0.0038 27.0 6.5 32 94-126 3-34 (317)
352 cd06280 PBP1_LacI_like_4 Ligan 28.3 4E+02 0.0087 23.2 19.9 36 215-252 171-210 (263)
353 PRK08017 oxidoreductase; Provi 28.3 2.1E+02 0.0046 25.0 6.9 49 94-154 5-53 (256)
354 PRK15454 ethanol dehydrogenase 28.3 3.4E+02 0.0074 26.5 8.7 13 216-229 106-118 (395)
355 TIGR03451 mycoS_dep_FDH mycoth 28.3 1.9E+02 0.0041 27.2 6.8 49 92-152 178-226 (358)
356 PRK06172 short chain dehydroge 28.3 4E+02 0.0087 23.2 9.6 69 142-226 26-94 (253)
357 TIGR03569 NeuB_NnaB N-acetylne 28.1 4.5E+02 0.0099 25.2 9.3 40 105-155 78-117 (329)
358 TIGR01292 TRX_reduct thioredox 28.1 84 0.0018 28.3 4.2 29 94-124 3-31 (300)
359 COG1759 5-formaminoimidazole-4 28.1 2.3E+02 0.0049 27.3 7.0 66 102-187 26-93 (361)
360 PRK06753 hypothetical protein; 28.1 86 0.0019 29.6 4.4 30 94-125 3-32 (373)
361 PRK07831 short chain dehydroge 27.9 4.2E+02 0.0091 23.3 11.0 32 90-122 17-48 (262)
362 PTZ00354 alcohol dehydrogenase 27.9 1.7E+02 0.0037 26.6 6.3 49 92-152 142-190 (334)
363 PLN02586 probable cinnamyl alc 27.9 1.9E+02 0.0042 27.4 6.9 49 92-152 185-233 (360)
364 PTZ00082 L-lactate dehydrogena 27.9 5.3E+02 0.011 24.4 14.8 31 93-125 8-38 (321)
365 cd08198 DHQS-like2 Dehydroquin 27.8 3.8E+02 0.0081 26.1 8.8 32 219-252 101-134 (369)
366 cd08246 crotonyl_coA_red croto 27.8 1.6E+02 0.0035 28.1 6.3 49 92-152 195-243 (393)
367 PRK06194 hypothetical protein; 27.8 4.4E+02 0.0096 23.5 9.4 73 140-228 23-95 (287)
368 COG1063 Tdh Threonine dehydrog 27.6 2E+02 0.0043 27.5 6.9 50 93-154 171-221 (350)
369 smart00046 DAGKc Diacylglycero 27.4 2.3E+02 0.0049 22.6 6.2 48 217-272 50-99 (124)
370 COG0078 ArgF Ornithine carbamo 27.4 2.3E+02 0.0051 26.9 7.0 60 92-155 154-214 (310)
371 cd08170 GlyDH Glycerol dehydro 27.4 2.8E+02 0.0062 26.3 7.9 16 108-123 14-29 (351)
372 PRK08849 2-octaprenyl-3-methyl 27.3 84 0.0018 30.1 4.3 30 94-125 6-35 (384)
373 COG0683 LivK ABC-type branched 27.3 5.1E+02 0.011 24.6 9.7 166 63-256 57-242 (366)
374 cd02201 FtsZ_type1 FtsZ is a G 27.3 1.8E+02 0.0038 27.3 6.3 47 200-254 74-125 (304)
375 PRK12384 sorbitol-6-phosphate 27.2 4.3E+02 0.0093 23.1 11.2 31 93-125 5-35 (259)
376 PRK09126 hypothetical protein; 27.2 82 0.0018 30.0 4.1 31 94-126 6-36 (392)
377 COG1064 AdhP Zn-dependent alco 27.2 2.2E+02 0.0047 27.6 6.9 51 92-155 168-218 (339)
378 cd08288 MDR_yhdh Yhdh putative 27.1 1.9E+02 0.0041 26.3 6.5 48 92-151 148-195 (324)
379 PRK07024 short chain dehydroge 27.0 4.4E+02 0.0095 23.2 9.7 29 94-124 6-34 (257)
380 cd08285 NADP_ADH NADP(H)-depen 27.0 2E+02 0.0042 26.9 6.7 48 92-151 168-215 (351)
381 PF12000 Glyco_trans_4_3: Gkyc 26.9 1.5E+02 0.0033 25.6 5.3 46 194-250 50-95 (171)
382 cd08551 Fe-ADH iron-containing 26.9 3.7E+02 0.008 25.7 8.6 52 168-229 41-92 (370)
383 PF00391 PEP-utilizers: PEP-ut 26.8 1.1E+02 0.0023 22.6 3.9 35 88-125 28-62 (80)
384 PRK08636 aspartate aminotransf 26.7 5.7E+02 0.012 24.5 10.5 18 138-155 131-148 (403)
385 PF13738 Pyr_redox_3: Pyridine 26.6 82 0.0018 26.7 3.7 24 102-125 6-29 (203)
386 PRK06077 fabG 3-ketoacyl-(acyl 26.5 2.5E+02 0.0054 24.4 7.0 55 93-154 8-62 (252)
387 PRK05579 bifunctional phosphop 26.5 93 0.002 30.6 4.4 26 100-125 212-237 (399)
388 cd06389 PBP1_iGluR_AMPA_GluR2 26.4 5.7E+02 0.012 24.3 12.8 35 86-122 53-87 (370)
389 PF01494 FAD_binding_3: FAD bi 26.3 98 0.0021 28.3 4.4 32 94-127 4-35 (356)
390 COG1212 KdsB CMP-2-keto-3-deox 26.2 5.1E+02 0.011 23.8 8.8 49 140-192 56-104 (247)
391 PRK08628 short chain dehydroge 26.1 4.5E+02 0.0097 23.0 10.5 53 93-155 10-62 (258)
392 PF00072 Response_reg: Respons 26.0 2.7E+02 0.0059 20.5 6.7 42 215-256 42-84 (112)
393 PRK10653 D-ribose transporter 25.9 4.9E+02 0.011 23.4 18.2 161 78-251 70-241 (295)
394 cd08277 liver_alcohol_DH_like 25.8 1.9E+02 0.0042 27.3 6.4 49 92-152 186-234 (365)
395 TIGR00215 lpxB lipid-A-disacch 25.8 2E+02 0.0044 27.7 6.6 36 87-124 86-121 (385)
396 TIGR00936 ahcY adenosylhomocys 25.7 1.8E+02 0.004 28.7 6.3 29 92-122 196-224 (406)
397 PRK12266 glpD glycerol-3-phosp 25.5 90 0.0019 31.5 4.2 32 91-125 7-38 (508)
398 PF13738 Pyr_redox_3: Pyridine 25.5 1E+02 0.0022 26.2 4.0 33 92-126 168-200 (203)
399 COG1879 RbsB ABC-type sugar tr 25.5 5.3E+02 0.011 23.6 16.5 166 78-255 79-256 (322)
400 CHL00200 trpA tryptophan synth 25.4 5.4E+02 0.012 23.7 13.3 50 78-128 107-156 (263)
401 PRK02106 choline dehydrogenase 25.4 71 0.0015 32.6 3.5 36 215-254 4-40 (560)
402 cd08231 MDR_TM0436_like Hypoth 25.4 2.3E+02 0.005 26.5 6.9 49 92-152 179-227 (361)
403 cd06318 PBP1_ABC_sugar_binding 25.4 4.7E+02 0.01 23.0 16.1 159 81-251 46-225 (282)
404 KOG1529 Mercaptopyruvate sulfu 25.4 1.3E+02 0.0028 28.4 4.8 52 195-247 215-266 (286)
405 PRK12823 benD 1,6-dihydroxycyc 25.2 4.5E+02 0.0099 23.0 8.5 31 92-124 10-40 (260)
406 cd06284 PBP1_LacI_like_6 Ligan 25.2 4.5E+02 0.0098 22.7 15.3 35 215-251 175-213 (267)
407 PRK05718 keto-hydroxyglutarate 25.1 4.6E+02 0.01 23.3 8.3 92 81-194 78-169 (212)
408 PRK00002 aroB 3-dehydroquinate 25.1 6.1E+02 0.013 24.2 10.6 96 141-251 24-126 (358)
409 PRK09620 hypothetical protein; 25.0 1.2E+02 0.0026 27.4 4.5 25 100-124 27-51 (229)
410 COG0041 PurE Phosphoribosylcar 25.0 1.7E+02 0.0036 25.1 5.0 84 167-266 18-103 (162)
411 COG0299 PurN Folate-dependent 25.0 1.7E+02 0.0038 26.0 5.3 42 219-260 3-44 (200)
412 PRK06200 2,3-dihydroxy-2,3-dih 25.0 4.8E+02 0.01 23.0 12.4 145 89-251 5-185 (263)
413 PF09363 XFP_C: XFP C-terminal 25.0 1.1E+02 0.0024 27.3 4.1 39 215-253 33-73 (203)
414 COG0206 FtsZ Cell division GTP 24.9 2.1E+02 0.0045 27.6 6.3 91 189-287 73-170 (338)
415 COG0299 PurN Folate-dependent 24.9 5E+02 0.011 23.1 11.2 20 140-159 43-62 (200)
416 TIGR01289 LPOR light-dependent 24.8 5.5E+02 0.012 23.7 10.1 31 93-125 6-37 (314)
417 PRK09330 cell division protein 24.8 69 0.0015 31.4 3.1 46 200-253 87-137 (384)
418 PRK12429 3-hydroxybutyrate deh 24.8 4.6E+02 0.01 22.7 13.1 53 93-154 7-59 (258)
419 PRK07035 short chain dehydroge 24.8 4.7E+02 0.01 22.8 14.5 12 242-253 179-190 (252)
420 PRK12778 putative bifunctional 24.8 2.4E+02 0.0052 30.0 7.4 56 92-152 571-627 (752)
421 cd01540 PBP1_arabinose_binding 24.7 4.9E+02 0.011 23.0 15.9 43 81-124 45-87 (289)
422 cd00615 Orn_deC_like Ornithine 24.7 3.1E+02 0.0068 25.1 7.4 77 63-155 51-128 (294)
423 cd06344 PBP1_ABC_ligand_bindin 24.6 5.5E+02 0.012 23.6 15.4 38 83-122 58-96 (332)
424 PRK12938 acetyacetyl-CoA reduc 24.6 4.6E+02 0.01 22.7 11.4 54 93-154 6-59 (246)
425 PF02310 B12-binding: B12 bind 24.6 3.3E+02 0.0071 20.9 7.7 32 216-247 51-85 (121)
426 PRK07121 hypothetical protein; 24.5 97 0.0021 30.9 4.3 31 91-124 21-51 (492)
427 PRK13957 indole-3-glycerol-pho 24.5 3.4E+02 0.0074 24.9 7.4 66 80-156 114-180 (247)
428 cd05284 arabinose_DH_like D-ar 24.5 2E+02 0.0043 26.5 6.1 47 92-151 169-216 (340)
429 TIGR00730 conserved hypothetic 24.5 2E+02 0.0042 24.9 5.6 88 196-299 16-119 (178)
430 PRK06481 fumarate reductase fl 24.4 97 0.0021 31.2 4.2 31 90-123 61-91 (506)
431 TIGR01751 crot-CoA-red crotony 24.4 1.9E+02 0.0042 27.7 6.2 49 92-152 191-239 (398)
432 PRK07494 2-octaprenyl-6-methox 24.3 91 0.002 29.7 3.9 30 94-125 10-39 (388)
433 cd05188 MDR Medium chain reduc 24.3 2.4E+02 0.0052 24.5 6.4 47 92-151 136-182 (271)
434 PRK08274 tricarballylate dehyd 24.3 1E+02 0.0022 30.5 4.3 31 91-124 5-35 (466)
435 PRK13057 putative lipid kinase 24.1 5.2E+02 0.011 23.6 8.8 39 216-258 50-88 (287)
436 PLN02827 Alcohol dehydrogenase 24.0 2.5E+02 0.0053 26.9 6.8 49 92-152 195-243 (378)
437 cd08179 NADPH_BDH NADPH-depend 24.0 3E+02 0.0065 26.5 7.4 52 168-229 42-93 (375)
438 cd05313 NAD_bind_2_Glu_DH NAD( 23.9 3.2E+02 0.0069 25.2 7.2 47 77-125 19-70 (254)
439 PF02826 2-Hacid_dh_C: D-isome 23.9 1.7E+02 0.0036 24.9 5.1 118 92-254 37-156 (178)
440 PRK12825 fabG 3-ketoacyl-(acyl 23.9 4.6E+02 0.0099 22.4 11.6 33 93-126 8-40 (249)
441 cd08297 CAD3 Cinnamyl alcohol 23.9 3E+02 0.0065 25.3 7.3 49 92-152 167-215 (341)
442 PRK06079 enoyl-(acyl carrier p 23.9 3.3E+02 0.0071 24.1 7.2 32 92-124 9-41 (252)
443 cd06388 PBP1_iGluR_AMPA_GluR4 23.8 6.5E+02 0.014 24.1 13.2 34 86-121 59-92 (371)
444 cd06307 PBP1_uncharacterized_s 23.8 5E+02 0.011 22.8 17.1 161 77-252 46-221 (275)
445 cd06285 PBP1_LacI_like_7 Ligan 23.8 4.9E+02 0.011 22.7 19.2 36 215-252 174-213 (265)
446 TIGR03799 NOD_PanD_pyr putativ 23.8 5.3E+02 0.011 26.3 9.4 56 92-155 161-241 (522)
447 PRK06924 short chain dehydroge 23.7 4.9E+02 0.011 22.6 13.6 31 94-125 4-34 (251)
448 PRK15317 alkyl hydroperoxide r 23.6 1E+02 0.0022 31.1 4.3 29 94-124 214-242 (517)
449 cd08186 Fe-ADH8 Iron-containin 23.6 3.8E+02 0.0082 25.9 8.1 52 168-229 45-96 (383)
450 PRK05772 translation initiatio 23.6 3E+02 0.0065 26.9 7.2 62 88-156 165-236 (363)
451 cd06167 LabA_like LabA_like pr 23.5 1.7E+02 0.0036 23.7 4.9 47 199-250 86-132 (149)
452 PF05706 CDKN3: Cyclin-depende 23.3 2.6E+02 0.0057 24.2 6.0 89 138-237 62-153 (168)
453 PRK06425 histidinol-phosphate 23.2 6.1E+02 0.013 23.5 10.5 19 138-156 91-109 (332)
454 cd06305 PBP1_methylthioribose_ 23.2 5E+02 0.011 22.6 16.3 46 78-124 43-88 (273)
455 PRK10669 putative cation:proto 23.2 6E+02 0.013 25.9 9.8 81 140-248 433-513 (558)
456 PF00218 IGPS: Indole-3-glycer 23.2 4.1E+02 0.0088 24.5 7.7 65 80-155 121-186 (254)
457 cd08287 FDH_like_ADH3 formalde 23.1 3E+02 0.0066 25.3 7.2 49 92-152 170-218 (345)
458 PRK05720 mtnA methylthioribose 23.1 3.3E+02 0.0072 26.3 7.4 59 92-156 148-215 (344)
459 PF03033 Glyco_transf_28: Glyc 23.1 2.8E+02 0.0061 21.7 6.1 50 95-156 3-54 (139)
460 PRK06617 2-octaprenyl-6-methox 23.1 1E+02 0.0023 29.3 4.0 29 94-124 4-32 (374)
461 cd08284 FDH_like_2 Glutathione 23.1 3.1E+02 0.0067 25.3 7.2 47 92-150 169-215 (344)
462 cd08240 6_hydroxyhexanoate_dh_ 23.1 3.5E+02 0.0076 25.1 7.6 48 92-151 177-224 (350)
463 COG2890 HemK Methylase of poly 23.0 96 0.0021 28.9 3.6 36 220-257 113-148 (280)
464 KOG1500 Protein arginine N-met 23.0 1.8E+02 0.0038 28.5 5.3 40 217-259 177-216 (517)
465 cd05211 NAD_bind_Glu_Leu_Phe_V 23.0 3.5E+02 0.0075 24.1 7.1 48 77-126 4-56 (217)
466 TIGR02853 spore_dpaA dipicolin 23.0 2.4E+02 0.0053 26.2 6.3 47 76-124 131-182 (287)
467 PRK12745 3-ketoacyl-(acyl-carr 22.9 3.5E+02 0.0077 23.5 7.2 12 242-253 181-192 (256)
468 cd05283 CAD1 Cinnamyl alcohol 22.9 3.1E+02 0.0067 25.4 7.2 48 92-152 171-218 (337)
469 TIGR01813 flavo_cyto_c flavocy 22.8 1.1E+02 0.0024 29.9 4.2 27 95-123 3-30 (439)
470 COG1635 THI4 Ribulose 1,5-bisp 22.8 4.2E+02 0.0091 24.4 7.4 53 216-272 30-95 (262)
471 PRK11749 dihydropyrimidine deh 22.8 3.2E+02 0.0069 26.9 7.5 56 92-152 274-330 (457)
472 COG3688 Predicted RNA-binding 22.8 4.7E+02 0.01 22.6 7.3 92 106-209 38-133 (173)
473 COG0826 Collagenase and relate 22.8 7E+02 0.015 24.1 10.9 96 139-248 18-118 (347)
474 PRK06475 salicylate hydroxylas 22.7 1.1E+02 0.0025 29.3 4.3 30 94-125 5-34 (400)
475 cd00530 PTE Phosphotriesterase 22.7 2E+02 0.0043 26.3 5.7 44 79-122 34-78 (293)
476 TIGR02817 adh_fam_1 zinc-bindi 22.7 2.2E+02 0.0049 26.0 6.1 49 92-152 150-199 (336)
477 cd01019 ZnuA Zinc binding prot 22.6 6.1E+02 0.013 23.3 11.4 93 107-209 188-283 (286)
478 cd08185 Fe-ADH1 Iron-containin 22.6 4.9E+02 0.011 25.0 8.6 24 201-229 72-95 (380)
479 PRK08278 short chain dehydroge 22.5 3.9E+02 0.0084 23.9 7.6 11 242-252 185-195 (273)
480 PRK12823 benD 1,6-dihydroxycyc 22.5 5.3E+02 0.011 22.6 11.8 12 242-253 176-187 (260)
481 cd08290 ETR 2-enoyl thioester 22.5 2.9E+02 0.0063 25.4 6.9 53 92-152 148-200 (341)
482 PRK07538 hypothetical protein; 22.5 1.2E+02 0.0026 29.4 4.3 30 94-125 3-32 (413)
483 COG0026 PurK Phosphoribosylami 22.5 1.6E+02 0.0034 28.9 4.9 29 97-127 7-35 (375)
484 TIGR01812 sdhA_frdA_Gneg succi 22.4 1.1E+02 0.0024 31.2 4.2 28 95-124 3-30 (566)
485 PRK05868 hypothetical protein; 22.4 1.3E+02 0.0028 28.8 4.5 29 94-124 4-32 (372)
486 cd00288 Pyruvate_Kinase Pyruva 22.3 8.3E+02 0.018 24.7 11.5 134 108-252 264-407 (480)
487 PRK05855 short chain dehydroge 22.3 5.4E+02 0.012 25.5 9.2 30 94-124 318-347 (582)
488 TIGR01005 eps_transp_fam exopo 22.2 7.8E+02 0.017 26.0 10.7 45 179-229 622-668 (754)
489 cd08148 RuBisCO_large Ribulose 22.1 3.4E+02 0.0074 26.5 7.3 102 20-123 96-227 (366)
490 PF09370 TIM-br_sig_trns: TIM- 22.1 6.4E+02 0.014 23.6 8.6 140 76-256 94-250 (268)
491 PRK08226 short chain dehydroge 22.1 3E+02 0.0066 24.2 6.7 12 242-253 176-187 (263)
492 PF03807 F420_oxidored: NADP o 21.9 3.3E+02 0.0072 20.0 6.4 40 102-151 8-51 (96)
493 cd08176 LPO Lactadehyde:propan 21.8 5.2E+02 0.011 24.9 8.6 46 201-252 74-136 (377)
494 PF01134 GIDA: Glucose inhibit 21.7 1.3E+02 0.0028 29.7 4.3 27 95-123 3-29 (392)
495 PRK07236 hypothetical protein; 21.7 1.3E+02 0.0028 28.7 4.4 32 93-126 8-39 (386)
496 PF00670 AdoHcyase_NAD: S-aden 21.7 2.7E+02 0.0058 24.0 5.8 29 92-122 24-52 (162)
497 PRK15404 leucine ABC transport 21.7 6.9E+02 0.015 23.6 15.4 151 83-254 85-253 (369)
498 PRK12834 putative FAD-binding 21.7 1.2E+02 0.0025 31.0 4.2 30 91-123 5-34 (549)
499 TIGR00147 lipid kinase, YegS/R 21.7 6.1E+02 0.013 23.1 8.8 41 216-258 57-97 (293)
500 PRK08010 pyridine nucleotide-d 21.7 1.2E+02 0.0026 29.7 4.2 30 92-124 5-34 (441)
No 1
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=336.71 Aligned_cols=260 Identities=38% Similarity=0.605 Sum_probs=223.0
Q ss_pred hcCCCCccccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchH
Q 021545 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 104 (311)
Q Consensus 31 ~l~~~p~~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNh 104 (311)
.|..|| |+.+...||||+. ++++++ |+||||++++.+||||+||++|++.+|+++|++++||+||+||||
T Consensus 2 ~l~rf~--R~~l~~~pTPiq~--L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT~GgiQSNh 77 (323)
T COG2515 2 NLSRFP--RMELIFGPTPIQK--LPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVTYGGIQSNH 77 (323)
T ss_pred CcccCC--ccccCCCCChhhh--HHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEEecccchhH
Confidence 467899 7899999999999 888876 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEe
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 184 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~i 184 (311)
.+++|++|+++|++|++++++.. + ++..++|+.+.+.+|+++..++.+.+. +....++.+++++++++.++|+|
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~---~-~y~~ngn~Ll~~l~G~~~~~~~~~~d~--~~~~~~~~~~e~~~~~g~kpyvI 151 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIE---A-NYLLNGNLLLSKLMGAEVRAVDAGTDI--GINASAEELAEEVRKQGGKPYVI 151 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccc---c-ccccccchhhhhhcCceEEEecCCCCh--hhchhhHHHHHHHHhcCCCCcEe
Confidence 99999999999999999998876 2 455689999999999999999876432 12344577888888899999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHH
Q 021545 185 PVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQG 264 (311)
Q Consensus 185 p~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~ 264 (311)
|.|++|+.+..||..++.||.+|.... .+||.|||++|||||.||++.++...+++++||||.+.++++++.+++.+
T Consensus 152 p~GG~~~~g~lGyv~~a~Ei~~Q~~~~---~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~ 228 (323)
T COG2515 152 PEGGSSPLGALGYVRLALEIAEQAEQL---LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLN 228 (323)
T ss_pred ccCCcCccccccHHHHHHHHHHHHhhc---cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999998731 57999999999999999999999999999999999999999999999999
Q ss_pred hHhhhCC--CC-CCCCeEEeccCCc----------------cchHHHHHHHHHhcCCC
Q 021545 265 LLDGLNA--GV-DSRDIVNIQNVSV----------------YMTFKNILMNILMNGKQ 303 (311)
Q Consensus 265 ~~~g~~~--~~-~~~dvv~v~e~~~----------------~~~~~~~~~~~~~~~~~ 303 (311)
+.+..+. +. ...+++.+.+-.. |.+.-.|+.|-.|.||+
T Consensus 229 L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKa 286 (323)
T COG2515 229 LAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKA 286 (323)
T ss_pred HHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHH
Confidence 9887443 11 3556666665433 34455566677777764
No 2
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=5.4e-41 Score=316.24 Aligned_cols=242 Identities=47% Similarity=0.705 Sum_probs=196.0
Q ss_pred ccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHH
Q 021545 41 SLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
++...+|||++ ++.|+. |+||||++++.+||||+|++.+++.+++++|+++||++|+++||||+|+|++|++
T Consensus 2 ~~~~~~TPl~~--~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~ 79 (311)
T TIGR01275 2 ELIPWPTPIQY--LPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKK 79 (311)
T ss_pred CCCCCCCccee--chhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHH
Confidence 45668999999 666653 7899999986569999999999999999999999999988999999999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHH
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 194 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~ 194 (311)
+|++|++|||+..+. ..|..+++++||+|+.++...|++. .+.+.++++++++++++.|++|+++.|+.+.
T Consensus 80 ~G~~~~ivvp~~~~~-------~~~~~~~~~~Ga~v~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 150 (311)
T TIGR01275 80 LGLDAVLVLREKEEL-------NGNLLLDKLMGAETRVYSAEEYFEI--MKYAEELAEELEKEGRKPYVIPVGGSNSLGT 150 (311)
T ss_pred hCCceEEEecCCccC-------CCCHHHHHHcCCEEEEECchhhhhh--HHHHHHHHHHHHhcCCCeEEECCCCCcHHHH
Confidence 999999999986421 3568888999999999986445432 2233444555555555678999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchh----hHHHHHHhHhhhC
Q 021545 195 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY----FYDYTQGLLDGLN 270 (311)
Q Consensus 195 ~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~----~~~~i~~~~~g~~ 270 (311)
.||.+++.||++|+.. ...+|+||+|+|||||++|++.++|+.+++++||||++.+.... ....+++++++++
T Consensus 151 ~g~~~~~~EI~~q~~~---~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~ 227 (311)
T TIGR01275 151 LGYVEAVLEIATQLES---EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLE 227 (311)
T ss_pred HHHHHHHHHHHHHHhc---CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999862 12699999999999999999999999999999999998765322 2335566778876
Q ss_pred CC---------CCCCCeEEeccCCccchHHHHHHH
Q 021545 271 AG---------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 271 ~~---------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
.+ ...++++.|+|.+.+..+..+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~la~~ 262 (311)
T TIGR01275 228 VKASEVIPELDDYSGPGYGKPTSEVAEIVKKVASR 262 (311)
T ss_pred CCCCCCEEEECCcccCcCCCCCHHHHHHHHHHHHH
Confidence 42 225667889999988888877653
No 3
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=6.5e-41 Score=318.50 Aligned_cols=254 Identities=41% Similarity=0.561 Sum_probs=202.4
Q ss_pred cCCCCccccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHH
Q 021545 32 LAPIPSHVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHC 105 (311)
Q Consensus 32 l~~~p~~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg 105 (311)
+..+| ++.+..++|||++ ++.|+. |+||||++++.+||||+|++.+++.+++++|.++|||+|+++||||
T Consensus 3 ~~~~~--~~~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g 78 (331)
T PRK03910 3 LARFP--RLELAGLPTPLEP--LPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLITAGAIQSNHA 78 (331)
T ss_pred cCcCC--CccccCCCCCceE--hhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEEcCcchhHHH
Confidence 45667 6788999999999 666653 7899999997668999999999999999999999999988999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEec
Q 021545 106 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIP 185 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip 185 (311)
+|+|++|+.+|++|++|||+..+..+.++...+|+.+++.+||+|+.++..++ ..+.....++++.++++..|++|
T Consensus 79 ~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~----~~~~~~~~a~~l~~~~~~~~~~~ 154 (331)
T PRK03910 79 RQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTD----MDAQLEELAEELRAQGRRPYVIP 154 (331)
T ss_pred HHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccch----HHHHHHHHHHHHHHcCCceEEEC
Confidence 99999999999999999999876422111123688999999999999986421 11223445556666655578999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHH---
Q 021545 186 VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT--- 262 (311)
Q Consensus 186 ~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i--- 262 (311)
+|+.|+.+.+||.+++.||++|+... +..||+||+|+|||||++|++.++++.+++++||||+++++..+.....
T Consensus 155 ~~~~~~~~~~g~~~~~~Ei~~q~~~~--~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~ 232 (331)
T PRK03910 155 VGGSNALGALGYVACALEIAQQLAEG--GVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKL 232 (331)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHhc--CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 99999999999999999999999621 1269999999999999999999999999999999999999877654433
Q ss_pred -HHhHhhhCCC------------CCCCCeEEeccCCccchHHHHHH
Q 021545 263 -QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 263 -~~~~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..+.++++.+ ...|+++.|+|.+.+..+..+..
T Consensus 233 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~ 278 (331)
T PRK03910 233 AQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLAR 278 (331)
T ss_pred HHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3344444432 22566788888888877777654
No 4
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.1e-40 Score=315.72 Aligned_cols=257 Identities=28% Similarity=0.429 Sum_probs=197.9
Q ss_pred hcCCCCccccccCCCCCCccccCCCCCC-------C-CCCCCCCCCC-CCCchhHHhHHHHHHHHHHcCCCEEEEeCCcc
Q 021545 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLP-------H-NTERDDLSGM-QLSGNKVRKLEFLMADAVAQGADCIITIGGIQ 101 (311)
Q Consensus 31 ~l~~~p~~~~~~~~~~TPL~~~~~~~Ls-------~-~vKRedl~~~-~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~ 101 (311)
+|..+| |+.+..++|||++ ++.|+ + |+||||++++ .+||||+|++.+++.+|+++|+++|+++||++
T Consensus 1 ~~~~~~--~~~l~~g~TPl~~--~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~ 76 (337)
T TIGR01274 1 NLSRFP--RYPLTFGPSPIHP--LPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQ 76 (337)
T ss_pred CCCcCC--ccccCCCCCCceE--hHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 366788 8999999999999 55553 2 7899999874 36999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCc
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP 181 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 181 (311)
||||+|+|++|+++|++|++|||+..+...+.+....|+.++++|||+|+.++.+ |+. +....+..+.+.++++++..
T Consensus 77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~-~~~~~~~~a~~~~~~~~~~~ 154 (337)
T TIGR01274 77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDG-FDI-GHRNSWERALEEVRGAGGKP 154 (337)
T ss_pred chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCc-ccc-cchHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999986531100001146899999999999998863 431 11223344555566554455
Q ss_pred EEecCC-CCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH
Q 021545 182 YVIPVG-GSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD 260 (311)
Q Consensus 182 y~ip~g-~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~ 260 (311)
|++|.+ +.++.+.+||.+++.||.+|+.+. +..||+||+|+|||||++|++.++++.++++|||||+++++..+...
T Consensus 155 ~~i~~~~~~~~~~~~G~~~~~~Ei~eq~~~~--~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~ 232 (337)
T TIGR01274 155 YPIPAGCSDHPLGGLGFVGFAFEVREQEGEL--GFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRA 232 (337)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHhc--CCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHH
Confidence 888887 457999999999999999998631 24699999999999999999999999999999999999999876544
Q ss_pred H----HHHhHhhhCCC------------CCCCCeEEeccCCccchHHHHHH
Q 021545 261 Y----TQGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 261 ~----i~~~~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
. ...++++++.. ...++.+.|+|.+.+..+..+..
T Consensus 233 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 283 (337)
T TIGR01274 233 QILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAK 283 (337)
T ss_pred HHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHH
Confidence 3 33455555542 11345677777776666655543
No 5
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.4e-40 Score=313.36 Aligned_cols=221 Identities=40% Similarity=0.689 Sum_probs=184.1
Q ss_pred hcCCCCccccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchH
Q 021545 31 HLAPIPSHVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNH 104 (311)
Q Consensus 31 ~l~~~p~~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNh 104 (311)
.|..+| |+++..++|||++ ++.|++ |+||||++++.+||||+|++.+++.+|+++|+++||++|+|+|||
T Consensus 8 ~~~~~~--~~~l~~~~TPl~~--~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~ 83 (329)
T PRK14045 8 LLSKFP--RVELIPWETPIQY--LPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNH 83 (329)
T ss_pred hhhcCC--CcccCCCCCCccc--chhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHH
Confidence 467788 7899999999999 666653 799999998767899999999999999999999999989999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEE
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYV 183 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ 183 (311)
|+|+|++|+.+|++|++|||...+. .+|..+++++||+++.++.+ .++ ..+...+++++++++++..|+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~-------~~~~~l~~~~Ga~v~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 153 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEEL-------KGNYLLDKIMGIETRVYEAKDSFE---LMKYAEEVAEELKGEGRKPYI 153 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCC-------CcCHHHHHHCCCEEEEECCCcccc---hHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999976531 35778899999999888642 222 112223445566666656788
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHH
Q 021545 184 IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQ 263 (311)
Q Consensus 184 ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~ 263 (311)
+|+|++|+.+..||.+.+.||++|+... +..+|+||+|+|||||++|++.+++..++++|||||++.+...++.+++.
T Consensus 154 ~p~~~~n~~~~~g~~~~~~EI~~q~~~~--~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~ 231 (329)
T PRK14045 154 IPPGGASPVGTLGYVRAVGEIATQVKKL--GVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVK 231 (329)
T ss_pred ECCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHH
Confidence 9999999999999988878999999731 23699999999999999999999999999999999999887677777766
Q ss_pred HhHh
Q 021545 264 GLLD 267 (311)
Q Consensus 264 ~~~~ 267 (311)
.++.
T Consensus 232 ~~~~ 235 (329)
T PRK14045 232 NLVK 235 (329)
T ss_pred HHHH
Confidence 6543
No 6
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.4e-39 Score=310.04 Aligned_cols=256 Identities=30% Similarity=0.460 Sum_probs=197.4
Q ss_pred cCCCCccccccCCCCCCccccCCCCCC-------C-CCCCCCCCCC-CCCchhHHhHHHHHHHHHHcCCCEEEEeCCccc
Q 021545 32 LAPIPSHVFSLGHFPTPIHKWNLPNLP-------H-NTERDDLSGM-QLSGNKVRKLEFLMADAVAQGADCIITIGGIQS 102 (311)
Q Consensus 32 l~~~p~~~~~~~~~~TPL~~~~~~~Ls-------~-~vKRedl~~~-~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~G 102 (311)
+..+| ++.+..++|||++ +++|+ + |+||||+++. .+||||+|++.+++.+|+++|+++|+++|+++|
T Consensus 3 ~~~~~--~~~l~~g~TPL~~--~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~G 78 (337)
T PRK12390 3 LQKFP--RYPLTFGPTPIHP--LKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVSIGGVQS 78 (337)
T ss_pred CCCCC--ccccCCCCCccee--HHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 56778 7899999999999 45432 2 7899999874 369999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcE
Q 021545 103 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY 182 (311)
Q Consensus 103 Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y 182 (311)
|||+|+|++|+++|++|++|+++..|.........+|+.++++|||+|+.++.+ |+. ...+.++.+.+.+++..++.|
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDG-FDI-GIRKSWEDALEDVRAAGGKPY 156 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCC-cch-hHHHHHHHHHHHHHhCCCceE
Confidence 999999999999999999999876543111011246889999999999999863 431 111233444445555344567
Q ss_pred EecCCC-CchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHH
Q 021545 183 VIPVGG-SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 261 (311)
Q Consensus 183 ~ip~g~-~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~ 261 (311)
.+|.+. .++.+.+||.+++.||++|+.+. +..+|+||+|+|||||++|++.++++.++++|||||+++++......+
T Consensus 157 ~~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~--~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~ 234 (337)
T PRK12390 157 AIPAGASDHPLGGLGFVGFAEEVRAQEAEL--GFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQ 234 (337)
T ss_pred EeCCcCCCCCcccHHHHHHHHHHHHHHHhc--CCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHH
Confidence 788774 46899999999999999997531 236999999999999999999999999999999999999987765543
Q ss_pred H----HHhHhhhCCC------------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 T----QGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i----~~~~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+ .+++++++++ ...++++.|+|.+.+..+..+..
T Consensus 235 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~ 284 (337)
T PRK12390 235 VLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred HHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 3 3334444442 22567888888887777766554
No 7
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.2e-38 Score=299.82 Aligned_cols=243 Identities=35% Similarity=0.502 Sum_probs=186.7
Q ss_pred CCccccCCCCCC-------C-CCCCCCCCCCC-CCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCC
Q 021545 47 TPIHKWNLPNLP-------H-NTERDDLSGMQ-LSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNL 117 (311)
Q Consensus 47 TPL~~~~~~~Ls-------~-~vKRedl~~~~-~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl 117 (311)
|||++ ++.|+ + |+||||++++. +||||+|++.+++.+++++|.++||++||++||||+|+|++|+.+|+
T Consensus 1 TPl~~--~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~ 78 (307)
T cd06449 1 TPIQY--LPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGL 78 (307)
T ss_pred Ccccc--hhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCC
Confidence 78887 45442 1 78999999863 48999999999999999999999999988999999999999999999
Q ss_pred cEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCC-chhHHHH
Q 021545 118 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS-NSIGTWG 196 (311)
Q Consensus 118 ~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~-n~~~~~G 196 (311)
+|++|||+..+.....+...+|+.+++++||+|+.++.. +++ .....++.+++.++++.+..|++|.+++ |+.+..|
T Consensus 79 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 156 (307)
T cd06449 79 KCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAG-FDI-GIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLG 156 (307)
T ss_pred eEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCc-chh-hHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHH
Confidence 999999988752110001136899999999999999864 322 1122233445555554445688898876 9999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHh----HhhhCC-
Q 021545 197 YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL----LDGLNA- 271 (311)
Q Consensus 197 y~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~----~~g~~~- 271 (311)
|.+++.||++|+... +..||+||+|+|||||++|++.++++.++.+|||||+++++..+....+.++ +.+.+.
T Consensus 157 ~~t~~~Ei~~q~~~~--~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 157 YVGFVLEIAQQEEEL--GFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHhc--CCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999731 2369999999999999999999999999999999999999877654444332 223332
Q ss_pred ---------CCCCCCeEEeccCCccchHHHHHH
Q 021545 272 ---------GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 272 ---------~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
....++++.|+|.+.+..+..+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~ 267 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCAR 267 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHH
Confidence 123577788888887777766643
No 8
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=7.2e-39 Score=307.98 Aligned_cols=247 Identities=17% Similarity=0.134 Sum_probs=191.9
Q ss_pred CCCchhhhcCCCCc--------cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHc
Q 021545 24 APPSWASHLAPIPS--------HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQ 89 (311)
Q Consensus 24 ~~p~w~~~l~~~p~--------~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~ 89 (311)
.||+|+..+...|. .++.+..++|||++ ++.++. |+|+|++|+ +||||+|++++++.+|+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~ig~TPl~~--l~~l~~~~g~~I~~KlE~~nP--tGS~KdR~A~~~l~~a~~~ 104 (368)
T PLN02556 29 GSPSFAQRLRDLPKDLPGTKIKTDASQLIGKTPLVY--LNKVTEGCGAYIAAKQEMFQP--TSSIKDRPALAMIEDAEKK 104 (368)
T ss_pred cccccccccchhhhhCCcchhhhhHHHhcCCCccEE--ccccccccCCEEEEEecccCC--ccchHHHHHHHHHHHHHHc
Confidence 79999987755444 46777889999999 566543 789999987 6999999999999999998
Q ss_pred C-----CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcH
Q 021545 90 G-----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV 164 (311)
Q Consensus 90 G-----~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~ 164 (311)
| +++||+ +|+||||+|+|++|+.+|++|++|||+..+ .+|+.++++|||+|+.++.. .. ..
T Consensus 105 G~i~pG~~~vV~--aSsGN~G~alA~~a~~~G~~~~ivvp~~~~--------~~k~~~lr~~GA~Vi~~~~~-~~---~~ 170 (368)
T PLN02556 105 NLITPGKTTLIE--PTSGNMGISLAFMAAMKGYKMILTMPSYTS--------LERRVTMRAFGAELVLTDPT-KG---MG 170 (368)
T ss_pred CCcCCCCCEEEE--eCCchHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECCC-CC---cc
Confidence 7 367886 578999999999999999999999999875 46899999999999999742 11 11
Q ss_pred HHHHHHHHHHHHcCCCcEEecCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCC
Q 021545 165 TLTNILKEKLLKEGRRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK 243 (311)
Q Consensus 165 ~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~ 243 (311)
..++.+.+ +.++.+..| +..++.|+.+. .||.+++.||++|+. +.+|+||+++|||||++|++.++++.+++
T Consensus 171 ~~~~~a~~-l~~~~~~~~-~~~q~~np~~~~~g~~ttg~EI~eq~~-----~~~D~vV~~vGtGGt~aGv~~~lk~~~p~ 243 (368)
T PLN02556 171 GTVKKAYE-LLESTPDAF-MLQQFSNPANTQVHFETTGPEIWEDTL-----GQVDIFVMGIGSGGTVSGVGKYLKSKNPN 243 (368)
T ss_pred HHHHHHHH-HHHhcCCCC-ccCCCCCHHHHHHHHHHHHHHHHHhcC-----CCCCEEEEcCCcchHHHHHHHHHHHhCCC
Confidence 22333333 343333333 44667899987 599999999999974 36999999999999999999999999999
Q ss_pred CeEEEEeccCCchhh-HHHHHHhHhhhCCC--------CCCCCeEEeccCCccchHHHHHH
Q 021545 244 AKVHAFSVCDDPDYF-YDYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 244 ~rVigV~~~g~~~~~-~~~i~~~~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+|||||++.++.... .+.....+.+++.+ ...|+++.|+|.+...++..++.
T Consensus 244 ~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~ 304 (368)
T PLN02556 244 VKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELAL 304 (368)
T ss_pred CEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHHHHHH
Confidence 999999999975431 12222334455542 23688999998888877666654
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=306.86 Aligned_cols=231 Identities=21% Similarity=0.243 Sum_probs=191.1
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHH--cCCCEEEEeCCccchHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVA--QGADCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~--~G~~~vVt~g~s~GNhg~AlA 109 (311)
.|++....+|||++ .+.|++ |+|||||++ +||||.|++++.+..+-+ +....||++ |.|||++++|
T Consensus 17 ~ri~~~~~~TPL~~--s~~Ls~~~g~~v~lK~E~lQ~--~gSFK~RGA~n~i~~Ls~e~~~~~gViaa--SaGNHaQGvA 90 (347)
T COG1171 17 ARLKGVVNPTPLQR--SPSLSERLGAEIYLKRENLQP--VGSFKIRGAYNKLSSLSEEEERAAGVIAA--SAGNHAQGVA 90 (347)
T ss_pred HHHhCcccCCCccc--chhhHHhhCceEEEeeccCcc--cccchhhhHHHHHHhcChhhhhcCceEEe--cCCcHHHHHH
Confidence 37888889999999 677776 799999998 799999999999887542 334568864 6799999999
Q ss_pred HHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCC
Q 021545 110 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 189 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~ 189 (311)
++|+++|++++||||..+|. .|+..+|.|||||+++++ .|++. .+.+++++++.+..|+.|+++
T Consensus 91 ~aa~~lGi~a~IvMP~~tp~--------~Kv~a~r~~GaeVil~g~-~~dda------~~~a~~~a~~~G~~~i~pfD~- 154 (347)
T COG1171 91 YAAKRLGIKATIVMPETTPK--------IKVDATRGYGAEVILHGD-NFDDA------YAAAEELAEEEGLTFVPPFDD- 154 (347)
T ss_pred HHHHHhCCCEEEEecCCCcH--------HHHHHHHhcCCEEEEECC-CHHHH------HHHHHHHHHHcCCEEeCCCCC-
Confidence 99999999999999999863 589999999999999987 47642 334556666554667777764
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------
Q 021545 190 NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY---------- 259 (311)
Q Consensus 190 n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~---------- 259 (311)
|.-+.|+.|++.||++|+++ .+|+||||+|+||+++|++.+++.+.|++|||||++++.+.+..
T Consensus 155 -p~viAGQGTi~lEileq~~~-----~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~ 228 (347)
T COG1171 155 -PDVIAGQGTIALEILEQLPD-----LPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVV 228 (347)
T ss_pred -cceeecccHHHHHHHHhccc-----cCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceee
Confidence 55556666999999999973 37999999999999999999999999999999999999987532
Q ss_pred -HHHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 260 -DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 260 -~~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
..+..+++|+++. ...||+|.|+|.++|.+|..+..+
T Consensus 229 ~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~ 277 (347)
T COG1171 229 LPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFER 277 (347)
T ss_pred cCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhc
Confidence 2356688888872 348999999999999999988754
No 10
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2e-37 Score=294.43 Aligned_cols=238 Identities=21% Similarity=0.179 Sum_probs=189.1
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAA 108 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~Al 108 (311)
.+....++|||++ +++|++ |+|+|++++ +||||+|++.+++.+++++|. ++||+ +|+||||+|+
T Consensus 6 ~~~~~~g~TPL~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~Rga~~~v~~a~~~g~~~~g~~vv~--aSsGN~g~al 79 (330)
T PRK10717 6 DVSDTIGNTPLIR--LNRASEATGCEILGKAEFLNP--GGSVKDRAALNIIWDAEKRGLLKPGGTIVE--GTAGNTGIGL 79 (330)
T ss_pred hHHHHhCCCceEE--ccccCCCCCCeEEEEeeccCC--CCCchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCcHHHHHH
Confidence 3556679999999 677664 789999987 699999999999999999987 67886 4789999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccC-cHHHHHHHHHHHHHcCCCcEEecCC
Q 021545 109 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIG-SVTLTNILKEKLLKEGRRPYVIPVG 187 (311)
Q Consensus 109 A~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~-~~~~~~~~~~~l~~~g~~~y~ip~g 187 (311)
|++|+++|++|++|||+..+ ..|+.+++.+||+|+.++...|++.+ ..+...++++++.+++++.++++.+
T Consensus 80 A~~a~~~G~~~~vv~p~~~~--------~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~ 151 (330)
T PRK10717 80 ALVAAARGYKTVIVMPETQS--------QEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQ 151 (330)
T ss_pred HHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCC
Confidence 99999999999999999874 35899999999999999863244211 1122233444555444345677888
Q ss_pred CCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH-------
Q 021545 188 GSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY------- 259 (311)
Q Consensus 188 ~~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~------- 259 (311)
++|+.+. .||.+++.||.+|++ ..+|+||+|+||||+++|++.++++..+++|||||++.+++.+..
T Consensus 152 ~~~~~~~~~g~~t~a~Ei~~ql~-----~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~ 226 (330)
T PRK10717 152 FDNPANREAHYETTGPEIWEQTD-----GKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELK 226 (330)
T ss_pred CCChhhHHHHHHhHHHHHHHhcC-----CCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcC
Confidence 8899875 679999999999985 358999999999999999999999999999999999999864421
Q ss_pred HHHHHhHhhhCCC--------CCCCCeEEeccCCccchHHHHHH
Q 021545 260 DYTQGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 260 ~~i~~~~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
....+++++++.+ ..+|+++.|+|.+.+..+..+..
T Consensus 227 ~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (330)
T PRK10717 227 AEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLE 270 (330)
T ss_pred CCCCcccCcCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHH
Confidence 1233567777752 23688999999999988877653
No 11
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.6e-37 Score=311.63 Aligned_cols=230 Identities=20% Similarity=0.207 Sum_probs=186.6
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.....+|||++ ++.|++ |+|+||+|+ +||||+|++.+.+..+. ++....||+ +|+||||+++|++
T Consensus 102 ~v~~~i~~TPL~~--s~~LS~~~g~~IylK~E~lqp--tGSFK~RGA~n~I~~L~~e~~~~GVV~--aSaGNhAqgvA~a 175 (591)
T PLN02550 102 KVYDVAIESPLQL--AKKLSERLGVKVLLKREDLQP--VFSFKLRGAYNMMAKLPKEQLDKGVIC--SSAGNHAQGVALS 175 (591)
T ss_pred hhhccccCChhhh--hHHhhHhhCCEEEEEEcCCCC--CCcHHHHHHHHHHHHHHHhcCCCCEEE--ECCCHHHHHHHHH
Confidence 4557789999999 677764 799999997 79999999999998873 444567886 4789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|+||||+.+| ..|+..++.|||+|++++. .|++ ..+ .+++++++.+..|+.|++ |+
T Consensus 176 A~~lGika~IvmP~~tp--------~~Kv~~~r~~GAeVvl~g~-~~de-----a~~-~A~~la~e~g~~fi~pfd--dp 238 (591)
T PLN02550 176 AQRLGCDAVIAMPVTTP--------EIKWQSVERLGATVVLVGD-SYDE-----AQA-YAKQRALEEGRTFIPPFD--HP 238 (591)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCC-CHHH-----HHH-HHHHHHHhcCCEEECCCC--Ch
Confidence 99999999999999886 2578999999999999986 3654 222 333454443345666654 67
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------HH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DY 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~~ 261 (311)
..+.|+.|++.||++|++ ..+|+||+|+|+||+++|++.++|..+|++|||||++++.+.+.. +.
T Consensus 239 ~viaGqgTig~EI~eQl~-----~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~ 313 (591)
T PLN02550 239 DVIAGQGTVGMEIVRQHQ-----GPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQ 313 (591)
T ss_pred HHHHHHHHHHHHHHHHcC-----CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCC
Confidence 778888899999999986 259999999999999999999999999999999999999877631 23
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+.++++|+++. ...||+|.|+|.++|.+|+.++.+
T Consensus 314 ~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~ 359 (591)
T PLN02550 314 VGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEE 359 (591)
T ss_pred CCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHH
Confidence 34577777752 347999999999999999988753
No 12
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=6e-37 Score=286.19 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=185.2
Q ss_pred CCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHHHHHHH
Q 021545 45 FPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 45 ~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
++|||++ ++.|+. |+|+|++++ +||||+|++.+++.++.++|+ ++||+ +|+||||+|+|++|++
T Consensus 1 g~TPl~~--~~~l~~~~g~~i~~K~E~~~p--tgS~K~R~a~~~l~~a~~~g~~~~~~~vv~--~SsGN~g~alA~~a~~ 74 (291)
T cd01561 1 GNTPLVR--LNRLSPGTGAEIYAKLEFFNP--GGSVKDRIALYMIEDAEKRGLLKPGTTIIE--PTSGNTGIGLAMVAAA 74 (291)
T ss_pred CCCCEEE--ccccCCCCCCeEEEEecccCC--CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHHHH
Confidence 5899999 677664 789999987 699999999999999999987 66775 5789999999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHH
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 194 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~ 194 (311)
+|++|++|||...+ ..|+.+++.+||+|+.++.. |.. ...+. .+.++++.++.+ .++++.++.|+.++
T Consensus 75 ~G~~~~i~vp~~~~--------~~k~~~~~~~Ga~v~~~~~~-~~~-~~~~~-~~~a~~~~~~~~-~~~~~~~~~~p~~~ 142 (291)
T cd01561 75 KGYRFIIVMPETMS--------EEKRKLLRALGAEVILTPEA-EAD-GMKGA-IAKARELAAETP-NAFWLNQFENPANP 142 (291)
T ss_pred cCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-CcC-CHHHH-HHHHHHHHhhCC-CcEEecCCCCchHH
Confidence 99999999999864 36899999999999999864 310 11123 233455655442 35566777899999
Q ss_pred HHHH-HHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchh-hHHHHHHhHhhhCCC
Q 021545 195 WGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY-FYDYTQGLLDGLNAG 272 (311)
Q Consensus 195 ~Gy~-t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~-~~~~i~~~~~g~~~~ 272 (311)
.||. +++.||.+|++ ..||+||+|+|+|||++|++.+++...+.+|||||++.+++.+ ......+.+++++.+
T Consensus 143 ~g~~~t~~~Ei~~ql~-----~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~ 217 (291)
T cd01561 143 EAHYETTAPEIWEQLD-----GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAG 217 (291)
T ss_pred HHHHHHHHHHHHHHcC-----CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCC
Confidence 9987 99999999986 2699999999999999999999999999999999999998766 222334466777753
Q ss_pred --------CCCCCeEEeccCCccchHHHHHHH
Q 021545 273 --------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 273 --------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
...|+++.|+|.+++..+..+..+
T Consensus 218 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 249 (291)
T cd01561 218 FIPENLDRSLIDEVVRVSDEEAFAMARRLARE 249 (291)
T ss_pred CCCCccCchhCceeEEECHHHHHHHHHHHHHH
Confidence 236899999999999888777653
No 13
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.3e-37 Score=282.57 Aligned_cols=231 Identities=17% Similarity=0.095 Sum_probs=189.1
Q ss_pred cccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA 109 (311)
+....++|||.+ +++++. |+|-|.+|+ .||.|||.+.+|+.+|+++|. ++|| ++|+||+|++||
T Consensus 5 ~~~~iG~TPlvr--L~~~~~~~~~~i~~KlE~~NP--~gSvKDR~A~~mI~~Ae~~G~l~pG~tIV--E~TSGNTGI~LA 78 (300)
T COG0031 5 ILDLIGNTPLVR--LNRLSPGTGVEIYAKLESFNP--GGSVKDRIALYMIEDAEKRGLLKPGGTIV--EATSGNTGIALA 78 (300)
T ss_pred hHHHhCCCCcEe--ecccCCCCCceEEEEhhhcCC--CCchhHHHHHHHHHHHHHcCCCCCCCEEE--EcCCChHHHHHH
Confidence 334559999999 666654 677888877 689999999999999999984 6777 468899999999
Q ss_pred HHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC-ccccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 110 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~-~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
++|+.+|+++++|||+.++ .++..++++|||+|++++. ..+ ....++++ +++.++.++.+++++|+
T Consensus 79 ~vaa~~Gy~~iivmP~~~S--------~er~~~l~a~GAevi~t~~~~g~----~~~a~~~a-~el~~~~p~~~~~~~Qf 145 (300)
T COG0031 79 MVAAAKGYRLIIVMPETMS--------QERRKLLRALGAEVILTPGAPGN----MKGAIERA-KELAAEIPGYAVWLNQF 145 (300)
T ss_pred HHHHHcCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEcCCCCCc----hHHHHHHH-HHHHHhCCCceEchhhc
Confidence 9999999999999999886 3689999999999999987 221 22344443 44556565667788899
Q ss_pred CchhHHHHH-HHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHhHh
Q 021545 189 SNSIGTWGY-IEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLD 267 (311)
Q Consensus 189 ~n~~~~~Gy-~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~~~ 267 (311)
.|+.+..+| .+++.||++|+. +.+|++|+++|||||++|++.++|+..|++||++|||++++.+........++
T Consensus 146 ~NpaN~~aH~~tT~~EI~~~~~-----g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~ 220 (300)
T COG0031 146 ENPANPEAHYETTGPEIWQQTD-----GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIE 220 (300)
T ss_pred CCCccHHHHHhhhHHHHHHHhC-----CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccC
Confidence 999998665 589999999996 45999999999999999999999999999999999999998764322566788
Q ss_pred hhCCC--------CCCCCeEEeccCCccchHHHHH
Q 021545 268 GLNAG--------VDSRDIVNIQNVSVYMTFKNIL 294 (311)
Q Consensus 268 g~~~~--------~~~~dvv~v~e~~~~~~~~~~~ 294 (311)
|+|.+ ..+|+++.|+|.+-+.+.-++.
T Consensus 221 GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La 255 (300)
T COG0031 221 GIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLA 255 (300)
T ss_pred CCCCCcCCcccccccCceEEEECHHHHHHHHHHHH
Confidence 88873 2279999999988777766654
No 14
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.6e-37 Score=306.83 Aligned_cols=231 Identities=22% Similarity=0.191 Sum_probs=185.3
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~ 110 (311)
.++.....+|||++ ++.|++ |+|+|++++ +||+|+|++.+++..+. +.+.+.||++ |+||||+++|+
T Consensus 29 ~~i~~~v~~TPL~~--~~~Ls~~~g~~IylK~E~lqp--tGSfK~RGA~n~i~~l~~~~~~~GVV~a--SaGNha~gvA~ 102 (521)
T PRK12483 29 ARVYDVARETPLQR--APNLSARLGNQVLLKREDLQP--VFSFKIRGAYNKMARLPAEQLARGVITA--SAGNHAQGVAL 102 (521)
T ss_pred HHHhhhcCCCCeeE--chhhhHhhCCEEEEEEcCCCC--CCchHHHHHHHHHHHhHHHHhcCcEEEE--CCCHHHHHHHH
Confidence 46778889999999 677764 899999997 79999999999887654 2334558865 56999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+.+|++|+||||..+| ..|+..++.|||+|++++. .|++ ..+. +.+++++.+..|+.|+ .|
T Consensus 103 aA~~lGi~~~IvmP~~tp--------~~Kv~~~r~~GAeVil~g~-~~d~-----a~~~-A~~la~e~g~~~v~pf--dd 165 (521)
T PRK12483 103 AAARLGVKAVIVMPRTTP--------QLKVDGVRAHGGEVVLHGE-SFPD-----ALAH-ALKLAEEEGLTFVPPF--DD 165 (521)
T ss_pred HHHHhCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECC-CHHH-----HHHH-HHHHHHhcCCeeeCCC--CC
Confidence 999999999999999986 3579999999999999986 4654 2233 3344444334455554 47
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------H
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------D 260 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~ 260 (311)
+..+.|+.|++.||++|++ ..+|+||+|+|+||+++|++.++|..+|++|||||++++++.+.. .
T Consensus 166 ~~viaGqgTig~EI~eQ~~-----~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~ 240 (521)
T PRK12483 166 PDVIAGQGTVAMEILRQHP-----GPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLG 240 (521)
T ss_pred hHHHHHHHHHHHHHHHHhC-----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCC
Confidence 8888899999999999985 359999999999999999999999999999999999999876531 2
Q ss_pred HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 261 YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 261 ~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
.+..+++|+++. ...|+++.|+|.+++.++..++-+
T Consensus 241 ~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~ 287 (521)
T PRK12483 241 QVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDD 287 (521)
T ss_pred CCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 334566777652 237999999999999999887643
No 15
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.7e-36 Score=284.07 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=182.8
Q ss_pred CCCCCCccccCCCCCCC-----CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLPH-----NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAAK 113 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~-----~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA~~a~ 113 (311)
.+++|||++ ++++.. |+|+|++|+ +||||+|++.+++.+++++|. ++||+ +|+||||+|+|++|+
T Consensus 4 ~~g~TPl~~--~~~~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a~ 77 (298)
T TIGR01139 4 LIGNTPLVR--LNRIEGCNANVFVKLEGRNP--SGSVKDRIALNMIWDAEKRGLLKPGKTIVE--PTSGNTGIALAMVAA 77 (298)
T ss_pred ccCCCceEE--ccccCCCCceEEEEEcccCC--CCcchHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChhHHHHHHHHH
Confidence 468999999 444221 789999987 799999999999999999987 66774 578999999999999
Q ss_pred HcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhH
Q 021545 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIG 193 (311)
Q Consensus 114 ~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~ 193 (311)
++|++|++|||+..+ ..++++++.+||+|+.++.. |+. ....+ .++++.++.+..|+++.+++|+.+
T Consensus 78 ~~Gl~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~-~~~---~~~~~-~a~~~~~~~~~~~~~~~~~~n~~~ 144 (298)
T TIGR01139 78 ARGYKLILTMPETMS--------IERRKLLKAYGAELVLTPGA-EGM---KGAIA-KAEEIAASTPNSYFMLQQFENPAN 144 (298)
T ss_pred HcCCeEEEEeCCccC--------HHHHHHHHHcCCEEEEECCC-CCH---HHHHH-HHHHHHHhCCCcEEcccccCCccc
Confidence 999999999999875 35799999999999999863 421 12223 344566655455777888888885
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH-HHHHHhHhhhCC
Q 021545 194 -TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYTQGLLDGLNA 271 (311)
Q Consensus 194 -~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~-~~i~~~~~g~~~ 271 (311)
..||.+++.||++|++ ..||+||+|+|+|||++|++.++++..+++|||||++.+++.+.. +.....+++++.
T Consensus 145 ~~~g~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~ 219 (298)
T TIGR01139 145 PEIHRKTTGPEIWRDTD-----GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGA 219 (298)
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCC
Confidence 6789999999999985 359999999999999999999999999999999999999864321 122234455553
Q ss_pred C--------CCCCCeEEeccCCccchHHHHHHH
Q 021545 272 G--------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 272 ~--------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+ ...|+++.|+|.+.+..+..+..+
T Consensus 220 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 252 (298)
T TIGR01139 220 GFIPKNLNRSVIDEVITVSDEEAIETARRLAAE 252 (298)
T ss_pred CCCCCccChhhCCEEEEECHHHHHHHHHHHHHh
Confidence 1 126889999999998888777654
No 16
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=8.2e-37 Score=297.05 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=184.9
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHc-CCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQ-GADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~-G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.....+|||++ +++|++ |+|+|++|+ +||||+|.+.+.+..+.+. +.++||+ +|+||||+++|++
T Consensus 13 ~i~~~i~~TPl~~--~~~Ls~~~g~~iylK~E~lqp--tGSfK~RgA~n~i~~l~~~~~~~gVV~--aSaGNhg~avA~a 86 (403)
T PRK08526 13 RISGFVNKTPFAY--APFLSKISGAEVYLKKENLQI--TGAYKIRGAYNKIANLSEEQKQHGVIA--ASAGNHAQGVAIS 86 (403)
T ss_pred HHhCcCCCCCccc--hHHHHHHhCCeEEEEecCCCC--CCCCHHHHHHHHHHhccHhhcCCEEEE--ECccHHHHHHHHH
Confidence 5677789999999 666654 899999997 7999999999999887654 3577886 4789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|+||||+.+| ..|+..++.|||+|++++. .|++ .++. +.+++++.+..|+.|+ .|+
T Consensus 87 a~~~Gi~~~IvmP~~~p--------~~k~~~~r~~GA~Vv~~g~-~~~~-----a~~~-a~~~a~~~g~~~v~p~--~~~ 149 (403)
T PRK08526 87 AKKFGIKAVIVMPEATP--------LLKVSGTKALGAEVILKGD-NYDE-----AYAF-ALEYAKENNLTFIHPF--EDE 149 (403)
T ss_pred HHHcCCCEEEEEcCCCC--------HHHHHHHHhCCCEEEEECC-CHHH-----HHHH-HHHHHHhcCCEeeCCC--CCH
Confidence 99999999999999875 3578899999999999986 4653 2233 3344444334555554 467
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
....||.+++.||++|++ .+|+||+|+|+||+++|++.++|..+|++|||||++++++.+... .
T Consensus 150 ~~i~G~gtia~EI~eq~~------~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~ 223 (403)
T PRK08526 150 EVMAGQGTIALEMLDEIS------DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKS 223 (403)
T ss_pred HHHhhhHHHHHHHHHhcC------CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCC
Confidence 778889999999999985 489999999999999999999999999999999999999876322 3
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+.++++|+++. ..+|++|.|+|.+++..+..++.
T Consensus 224 ~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~ 268 (403)
T PRK08526 224 VRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIANAILFLLE 268 (403)
T ss_pred CCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 45667777752 23799999999999999887764
No 17
>PLN00011 cysteine synthase
Probab=100.00 E-value=2e-36 Score=286.88 Aligned_cols=230 Identities=18% Similarity=0.165 Sum_probs=181.7
Q ss_pred ccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC-----CCEEEEeCCccchHHHHHH
Q 021545 41 SLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQG-----ADCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G-----~~~vVt~g~s~GNhg~AlA 109 (311)
....++|||++ +++++. |+|+|++++ +||||+|++.+++.+|+++| +++||+ +|+||||+|+|
T Consensus 12 ~~~~g~TPl~~--l~~l~~~~g~~i~~K~E~~nP--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~--aSsGN~g~alA 85 (323)
T PLN00011 12 TELIGNTPMVY--LNNIVDGCVARIAAKLEMMEP--CSSVKDRIAYSMIKDAEDKGLITPGKSTLIE--ATAGNTGIGLA 85 (323)
T ss_pred HHHhCCCceEE--ccccCCCCCceEEEEecccCC--ccccchHHHHHHHHHHHHcCCCCCCCcEEEE--eCCChHHHHHH
Confidence 34569999999 666652 789999987 79999999999999999998 578886 57899999999
Q ss_pred HHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCC
Q 021545 110 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS 189 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~ 189 (311)
++|+.+|++|++|||+..+ ..|+.+++++||+|+.++.. ++. ...++. ++++.++.+. ++++.++.
T Consensus 86 ~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~-~~~---~~~~~~-a~~l~~~~~~-~~~~~~~~ 151 (323)
T PLN00011 86 CIGAARGYKVILVMPSTMS--------LERRIILRALGAEVHLTDQS-IGL---KGMLEK-AEEILSKTPG-GYIPQQFE 151 (323)
T ss_pred HHHHHcCCeEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCC-cCh---HHHHHH-HHHHHHhCCC-eEEecccc
Confidence 9999999999999999875 36899999999999999863 321 122233 4455554333 55666766
Q ss_pred chhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh-HHHHHHhHh
Q 021545 190 NSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF-YDYTQGLLD 267 (311)
Q Consensus 190 n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~-~~~i~~~~~ 267 (311)
|+.+. .||.+++.||++|+. ..||+||+|+|||||++|++.++|+..+++|||||++.++..+. .+...++++
T Consensus 152 n~~n~~~~~~t~~~EI~~q~~-----~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~ 226 (323)
T PLN00011 152 NPANPEIHYRTTGPEIWRDSA-----GKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQ 226 (323)
T ss_pred CCccHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCC
Confidence 55443 479999999999984 36999999999999999999999999999999999999976432 223344666
Q ss_pred hhCCC--------CCCCCeEEeccCCccchHHHHHH
Q 021545 268 GLNAG--------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 268 g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+++.+ ...|+++.|+|.+.+..+..+..
T Consensus 227 gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 262 (323)
T PLN00011 227 GIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLAL 262 (323)
T ss_pred CCCCCCCCcccChhhCCeEEEECHHHHHHHHHHHHH
Confidence 66652 12678999999998888777654
No 18
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=7.8e-37 Score=304.02 Aligned_cols=229 Identities=21% Similarity=0.202 Sum_probs=186.3
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHH-HHcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADA-VAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a-~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.....+|||++ +++|++ |+||||+++ +||+|+|++.+++..+ .+++.++||++ |+||||+++|++
T Consensus 10 ~v~~~i~~TPL~~--~~~Ls~~~g~~i~lK~E~lqp--tgSfK~RgA~n~i~~l~~~~~~~gVV~a--SaGNha~~vA~a 83 (499)
T TIGR01124 10 RVYEAAQETPLQK--AAKLSERLGNRILIKREDLQP--VFSFKLRGAYNKMAQLSPEQKARGVIAA--SAGNHAQGVAFS 83 (499)
T ss_pred HhhCccCCCCeee--hHHHHHHhCCEEEEEecCCCC--CCCCHHHHHHHHHHHhhHHhcCCEEEEE--CCCHHHHHHHHH
Confidence 5667789999999 677764 789999987 7999999999998876 34456778875 679999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|++|||..+| ..|+..++.+||+|++++. .|++ + ...+++++++.+..|+.|+ .|+
T Consensus 84 a~~~Gi~~~IvmP~~tp--------~~Kv~~~r~~GA~Vvl~g~-~~d~-----a-~~~a~~la~~~g~~~i~p~--~~~ 146 (499)
T TIGR01124 84 AARLGLKALIVMPETTP--------DIKVDAVRGFGGEVVLHGA-NFDD-----A-KAKAIELSQEKGLTFIHPF--DDP 146 (499)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEeCc-CHHH-----H-HHHHHHHHHhcCCEeeCCC--CCh
Confidence 99999999999999875 3589999999999999975 4653 2 2334556665445555554 478
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------HH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DY 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~~ 261 (311)
..+.|+.|++.||++|++ ..+|+||+|+|||||++|++.++|...|++|||||++.+++.+.. +.
T Consensus 147 ~~i~G~gtig~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~ 221 (499)
T TIGR01124 147 LVIAGQGTLALEILRQVA-----NPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQ 221 (499)
T ss_pred HHHHhhHHHHHHHHHhCC-----CCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCC
Confidence 888899999999999985 359999999999999999999999999999999999999876532 12
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+..+++|+++. ..+|+++.|+|.++|.++..+..
T Consensus 222 ~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~ 266 (499)
T TIGR01124 222 VGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFE 266 (499)
T ss_pred CCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 34456777642 34799999999999999988764
No 19
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8.7e-37 Score=289.21 Aligned_cols=228 Identities=18% Similarity=0.145 Sum_probs=180.1
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCE-EEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADC-IITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~-vVt~g~s~GNhg~AlA~~ 111 (311)
++...+++|||++ +++|++ |+|+|++++ +||||+|++.+++.++.++|.+. ||++ |+||||+|+|++
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~a~~~~~~~gvv~a--SsGN~g~alA~~ 85 (322)
T PRK07476 12 RIAGRVRRTPLVA--SASLSARAGVPVWLKLETLQP--TGSFKLRGATNALLSLSAQERARGVVTA--STGNHGRALAYA 85 (322)
T ss_pred HHhCCCCCCCcee--chhhHHhhCCeEEEEEccCCC--CCCchHHHHHHHHHhhhhhhhCCeEEEE--CCChHHHHHHHH
Confidence 5666789999999 677653 899999987 79999999999999999888755 8864 789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|++|||+..+ ..|+..++.|||+|+.++.. |++ ..+.+ +++.++.+..|+.| +.|+
T Consensus 86 a~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~-----~~~~a-~~~~~~~g~~~~~~--~~n~ 148 (322)
T PRK07476 86 ARALGIRATICMSRLVP--------ANKVDAIRALGAEVRIVGRS-QDD-----AQAEV-ERLVREEGLTMVPP--FDDP 148 (322)
T ss_pred HHHhCCCEEEEeCCCCC--------HHHHHHHHHcCCEEEEECCC-HHH-----HHHHH-HHHHHhcCCEEeCC--CCCc
Confidence 99999999999999875 35899999999999999863 442 22333 34444333344433 3477
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
....||.+++.||++|++ .+|+||+|+||||+++|++.++|..++++|||||++++.+..... .
T Consensus 149 ~~~~g~~t~~~Ei~~Q~~------~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~ 222 (322)
T PRK07476 149 RIIAGQGTIGLEILEALP------DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEE 222 (322)
T ss_pred ceeechhHHHHHHHHhCc------CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCC
Confidence 888899999999999985 489999999999999999999999999999999999986543211 1
Q ss_pred HHHhHhhh----CC---------CCCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGL----NA---------GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~----~~---------~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+.++.+++ +. ....|+++.|+|.+++..+..+..
T Consensus 223 ~~t~a~~l~~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~ 269 (322)
T PRK07476 223 VPTLADSLGGGIGLDNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYR 269 (322)
T ss_pred CCCccccccccccCCcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 22233333 22 134789999999999999888775
No 20
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.6e-36 Score=284.36 Aligned_cols=231 Identities=18% Similarity=0.124 Sum_probs=178.4
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAA 108 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~Al 108 (311)
++...+++|||++ ++.|+. |+|+|++|+ +||||+|++.+++.+++++|. ++||+ +|+||||+|+
T Consensus 5 ~i~~~~g~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~g~al 78 (296)
T PRK11761 5 TLEDTIGNTPLVK--LQRLPPDRGNTILAKLEGNNP--AGSVKDRPALSMIVQAEKRGEIKPGDTLIE--ATSGNTGIAL 78 (296)
T ss_pred cHHHhcCCCceEe--ccccccCCCCEEEEEEcccCC--CCCchhHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHH
Confidence 4556689999999 566553 789999998 799999999999999999986 67886 5789999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEEecCC
Q 021545 109 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 187 (311)
Q Consensus 109 A~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g 187 (311)
|++|+.+|++|++|||+..+ ..|+..++.|||+|+.++.. .++ +. .+.+++++++.+ .++ ..+
T Consensus 79 A~~a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~-----~~-~~~a~~l~~~~~-~~~-~~~ 142 (296)
T PRK11761 79 AMIAAIKGYRMKLIMPENMS--------QERRAAMRAYGAELILVPKEQGME-----GA-RDLALQMQAEGE-GKV-LDQ 142 (296)
T ss_pred HHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----HH-HHHHHHHHhccC-CEe-cCC
Confidence 99999999999999999875 36899999999999999862 232 12 334556665542 333 344
Q ss_pred CCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH-HHH-HH
Q 021545 188 GSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYT-QG 264 (311)
Q Consensus 188 ~~n~~~~~-Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~-~~i-~~ 264 (311)
+.|+.+.. ||.+++.||++|++ ..+|+||+|+|||||++|++.++|+..+++||||||+.++..... ... ..
T Consensus 143 ~~n~~~~~~~~~t~~~Ei~eq~~-----~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~ 217 (296)
T PRK11761 143 FANPDNPLAHYETTGPEIWRQTE-----GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEE 217 (296)
T ss_pred CCChhhHHHHhhchHHHHHHhcC-----CCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCC
Confidence 56666544 57899999999985 358999999999999999999999999999999999998653210 000 00
Q ss_pred hHhhhCCCCCCCCeEEeccCCccchHHHHHHH
Q 021545 265 LLDGLNAGVDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 265 ~~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
....+......|+++.|+|.+.+.++..++.+
T Consensus 218 ~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 249 (296)
T PRK11761 218 YLPKIFDASRVDRVLDVSQQEAENTMRRLARE 249 (296)
T ss_pred cCCcccChhhCCEEEEECHHHHHHHHHHHHHH
Confidence 01111112346899999999999998887764
No 21
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.8e-36 Score=285.06 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=180.2
Q ss_pred CCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC---CCEEEEeCCccchHHHHHHHHHHHcC
Q 021545 46 PTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQG---ADCIITIGGIQSNHCRAAAVAAKYLN 116 (311)
Q Consensus 46 ~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G---~~~vVt~g~s~GNhg~AlA~~a~~~G 116 (311)
+|||++ +++|++ |+|+|++++ +||||+|++.+++.+++++| .++||++ |+||||+|+|++|+.+|
T Consensus 1 ~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~~~vv~a--SsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIE--STALSKTAGCNVFLKLENLQP--SGSFKIRGIGHLCQKSAKQGLNECVHVVCS--SGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccc--cchhhHhhCCeEEEEeccCCC--cCChHHHHHHHHHHHHHHhhcccCCeEEEe--CCcHHHHHHHHHHHHcC
Confidence 599999 566653 789999986 79999999999999999998 7888875 56999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHH
Q 021545 117 LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 196 (311)
Q Consensus 117 l~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~G 196 (311)
++|++|||...+ ..|+..++.|||+|+.++...++. . .+.+++++++.+..|++. ++.|+.+.+|
T Consensus 75 ~~~~iv~p~~~~--------~~k~~~l~~~GA~v~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~-~~~n~~~~~g 139 (316)
T cd06448 75 VPCTIVVPESTK--------PRVVEKLRDEGATVVVHGKVWWEA-----D-NYLREELAENDPGPVYVH-PFDDPLIWEG 139 (316)
T ss_pred CCEEEEECCCCC--------HHHHHHHHHcCCEEEEECCchHHH-----H-HHHHHHHHhccCCcEEeC-CCCCchhhcc
Confidence 999999999874 358999999999999998632321 1 334555666542344443 3468999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCC-CCCeEEEEeccCCchhhHH----------HHHHh
Q 021545 197 YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-LKAKVHAFSVCDDPDYFYD----------YTQGL 265 (311)
Q Consensus 197 y~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~-~~~rVigV~~~g~~~~~~~----------~i~~~ 265 (311)
|.+++.||++|++.. ..||+||+|+|||||++|++.+++..+ +++|||||++.+++.+... ...++
T Consensus 140 ~~t~~~Ei~~q~~~~---~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~ 216 (316)
T cd06448 140 HSSMVDEIAQQLQSQ---EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSV 216 (316)
T ss_pred ccHHHHHHHHHcccc---CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCch
Confidence 999999999999620 159999999999999999999999996 9999999999998654321 22355
Q ss_pred HhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 266 LDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 266 ~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
++|++.+ ...++++.|+|.+.+..+..+..
T Consensus 217 a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~ 257 (316)
T cd06448 217 ATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFAD 257 (316)
T ss_pred hhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 6677653 12578999999999988877765
No 22
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=3e-36 Score=282.65 Aligned_cols=228 Identities=21% Similarity=0.183 Sum_probs=180.8
Q ss_pred CCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA~~a 112 (311)
.+++|||++ ++.|+. |+|+|++++ +||||+|++.+++..++++|. ++||+ +|+||||+|+|++|
T Consensus 4 ~vg~TPL~~--~~~l~~~~g~~i~~K~E~~~p--tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a 77 (299)
T TIGR01136 4 LIGNTPLVR--LNRLAPGCDARVLAKLEGRNP--SGSVKDRIALSMIEDAEKRGLLKPGDTIIE--ATSGNTGIALAMVA 77 (299)
T ss_pred ccCCCceEE--ccccCCCCCceEEEEEcccCC--CCCccHHHHHHHHHHHHHcCCCCCCCEEEE--eCCChHHHHHHHHH
Confidence 358999999 666653 789999987 799999999999999999987 66774 57899999999999
Q ss_pred HHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCcc-ccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 113 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~-~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
+.+|++|++|||+..+ ..|+.+++.+||+|+.++... ++ +..+ .++++.++. ..|+++.++.|+
T Consensus 78 ~~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~-----~~~~-~a~~~~~~~-~~~~~~~~~~~~ 142 (299)
T TIGR01136 78 AAKGYKLILTMPETMS--------LERRKLLRAYGAELILTPAEEGMK-----GAID-KAEELAAET-NKYVMLDQFENP 142 (299)
T ss_pred HHcCCcEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----HHHH-HHHHHHhhC-CCeEecCCCCCc
Confidence 9999999999999875 358999999999999998631 22 2323 344555543 356777778787
Q ss_pred hH-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH-HHHHhHhhh
Q 021545 192 IG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD-YTQGLLDGL 269 (311)
Q Consensus 192 ~~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~-~i~~~~~g~ 269 (311)
.+ ..||.+++.||++|++ ..+|+||+|+|+||+++|++.++++.++.+|||||++.+++.+... .....+.++
T Consensus 143 ~~~~~g~~t~~~Ei~~ql~-----~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i 217 (299)
T TIGR01136 143 ANPEAHYKTTGPEIWRDTD-----GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGI 217 (299)
T ss_pred hhHHHHHHHHHHHHHHhcC-----CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCC
Confidence 76 6789999999999986 3599999999999999999999999999999999999998654321 011122233
Q ss_pred CCC--------CCCCCeEEeccCCccchHHHHHHH
Q 021545 270 NAG--------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 270 ~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+.+ ...|+++.|+|.+++..+..+..+
T Consensus 218 ~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 252 (299)
T TIGR01136 218 GAGFIPKILDLSLIDEVITVSDEDAIETARRLARE 252 (299)
T ss_pred CCCCCCccCChhhCCEEEEECHHHHHHHHHHHHHH
Confidence 331 226789999999999888777653
No 23
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=285.01 Aligned_cols=251 Identities=20% Similarity=0.206 Sum_probs=199.2
Q ss_pred cCCCCCchhhhcCCCCccccccCCCCCCcccc-CCCCCCC---CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC-CCEEE
Q 021545 21 TSYAPPSWASHLAPIPSHVFSLGHFPTPIHKW-NLPNLPH---NTERDDLSGMQLSGNKVRKLEFLMADAVAQG-ADCII 95 (311)
Q Consensus 21 ~~~~~p~w~~~l~~~p~~~~~~~~~~TPL~~~-~~~~Ls~---~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G-~~~vV 95 (311)
+|+++|.-+--....-..++..+...|||.+- .++.+.. |+||||+++ .||||.|++.+++...-+++ +.+||
T Consensus 41 d~~~~~~~p~~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQp--sgSFK~RGa~~~~~kla~~~~~~gVi 118 (457)
T KOG1250|consen 41 DPFCDPENPFYDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQP--SGSFKIRGAGNALQKLAKQQKKAGVI 118 (457)
T ss_pred CcCCCCCCccchhhhhhhccccceecccchhhhhhhhhcCCceEEEehhccc--ccceehhhHHHHHHHHHHhhhcCceE
Confidence 45555554422211222467788889999982 2333222 899999998 69999999999988865555 78888
Q ss_pred EeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHH
Q 021545 96 TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLL 175 (311)
Q Consensus 96 t~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~ 175 (311)
+ +|.||||+|+|++|+++|++++||||..+|. -+++.++-+||+|++.+. .|+++ ...+.+++
T Consensus 119 a--sSaGNha~a~Ayaa~~LgipaTIVmP~~tp~--------~kiq~~~nlGA~Vil~G~-~~deA------k~~a~~lA 181 (457)
T KOG1250|consen 119 A--SSAGNHAQAAAYAARKLGIPATIVMPVATPL--------MKIQRCRNLGATVILSGE-DWDEA------KAFAKRLA 181 (457)
T ss_pred E--ecCccHHHHHHHHHHhcCCceEEEecCCChH--------HHHHHHhccCCEEEEecc-cHHHH------HHHHHHHH
Confidence 5 4679999999999999999999999999864 379999999999999987 47653 33344566
Q ss_pred HcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 176 KEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 176 ~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
++.+-.|+.|++ +|.-+.|+.|++.||.+|+.. .++.||||+|+||+++|++.|++..+|+++||||+..+..
T Consensus 182 ke~gl~yI~pfD--hP~I~aGqgTig~EIl~ql~~-----~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~ 254 (457)
T KOG1250|consen 182 KENGLTYIPPFD--HPDIWAGQGTIGLEILEQLKE-----PDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAH 254 (457)
T ss_pred HhcCceecCCCC--CchhhcCcchHHHHHHHhhcC-----CCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcH
Confidence 554445777765 577777777999999999973 4569999999999999999999999999999999999988
Q ss_pred hhh----------HHHHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHHH
Q 021545 256 DYF----------YDYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMNI 297 (311)
Q Consensus 256 ~~~----------~~~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~~ 297 (311)
.|- .+.+..+++|+++. ...|++|.|.|.++|-+|++++-|-
T Consensus 255 ~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 255 SFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred HHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhh
Confidence 764 45677799999983 4489999999999999999998763
No 24
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=286.46 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=181.7
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC--CEEEEeCCccchHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA--DCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~--~~vVt~g~s~GNhg~AlA~ 110 (311)
++....++|||++ ++.|++ |+|+|++|+ +||||+|++.+++.++++++. ..||+ +|+||||+|+|+
T Consensus 14 ~i~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~Rga~~~l~~a~~~~~~~~~vv~--aSsGN~g~alA~ 87 (322)
T PRK06110 14 VVYAAMPPTPQYR--WPLLAERLGCEVWVKHENHTP--TGAFKVRGGLVYFDRLARRGPRVRGVIS--ATRGNHGQSVAF 87 (322)
T ss_pred HHhCcCcCCCccc--chhHHHHhCCeEEEEeccCCC--cCCcHHHHHHHHHHHhhhhcCCCceEEE--ECCCHHHHHHHH
Confidence 5566789999999 677653 789999987 799999999999999987754 55664 578999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+++|++|++|||...+ ..|..+++.|||+|+.++. .|++ ..+.+ +++.++. ..|++|.. |
T Consensus 88 ~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~-~~~~-----~~~~a-~~~~~~~-~~~~~~~~--~ 149 (322)
T PRK06110 88 AARRHGLAATIVVPHGNS--------VEKNAAMRALGAELIEHGE-DFQA-----AREEA-ARLAAER-GLHMVPSF--H 149 (322)
T ss_pred HHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----HHHHH-HHHHHhc-CCEEcCCC--C
Confidence 999999999999999875 2478999999999999875 3543 22333 3344432 35777643 5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------- 260 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~---------- 260 (311)
+....||.+++.||++|++ .+|+||+|+|+||+++|++.++++.++++|||||++.+++.+...
T Consensus 150 ~~~~~G~~t~~~Ei~~q~~------~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~ 223 (322)
T PRK06110 150 PDLVRGVATYALELFRAVP------DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTP 223 (322)
T ss_pred ChHHhccchHHHHHHhhCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 6778899999999999985 489999999999999999999999999999999999998765321
Q ss_pred HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 261 YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 261 ~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
.+.++.++++.. ...|+++.|+|.+++..+..+..+
T Consensus 224 ~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~ 270 (322)
T PRK06110 224 VATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRAYFTD 270 (322)
T ss_pred CCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 123456666432 237899999999999998887643
No 25
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.2e-35 Score=288.39 Aligned_cols=233 Identities=18% Similarity=0.113 Sum_probs=185.9
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC-----CEEEEeCCccchHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRA 107 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~-----~~vVt~g~s~GNhg~A 107 (311)
++...+++|||++ ++.+++ |+|.|.+|+ +||+|+|.+.++|.+++++|. ++||+ +|+||||+|
T Consensus 116 ~i~~~iG~TPLv~--l~~l~~~~g~~Iy~KlE~lNP--tGSfKdR~A~~~l~~a~~~G~l~pG~~~VVe--aSSGN~G~A 189 (429)
T PLN03013 116 NVSQLIGKTPMVY--LNSIAKGCVANIAAKLEIMEP--CCSVKDRIGYSMVTDAEQKGFISPGKSVLVE--PTSGNTGIG 189 (429)
T ss_pred HHHhcCCCCCeEE--CcccccccCCeEEEEeccCCC--ccccHHHHHHHHHHHHHHcCCcCCCCcEEEE--ECCcHHHHH
Confidence 4566789999999 666543 789999987 799999999999999999885 45775 478999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCC
Q 021545 108 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG 187 (311)
Q Consensus 108 lA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g 187 (311)
+|++|+.+|++|++|||+..+ ..|+.+++.|||+|+.++.. +. ....++. ++++.++.+. ++++.+
T Consensus 190 LA~~a~~~G~~~~VvvP~~~s--------~~K~~~ira~GAeVi~v~~~-~~---~~~a~~~-A~ela~~~~g-~~~~~q 255 (429)
T PLN03013 190 LAFIAASRGYRLILTMPASMS--------MERRVLLKAFGAELVLTDPA-KG---MTGAVQK-AEEILKNTPD-AYMLQQ 255 (429)
T ss_pred HHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHcCCEEEEECCC-CC---hHHHHHH-HHHHHhhcCC-eEeCCC
Confidence 999999999999999999875 36899999999999999753 21 1123333 4455544333 445677
Q ss_pred CCchhHHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh-HHHHHHh
Q 021545 188 GSNSIGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF-YDYTQGL 265 (311)
Q Consensus 188 ~~n~~~~~-Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~-~~~i~~~ 265 (311)
+.|+.+.. ||.+++.||++|+. +++|+||+++|||||++|+++++|+..|++||||||+.+++.+. .......
T Consensus 256 y~Np~n~~ah~~ttg~EI~eq~~-----~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~ 330 (429)
T PLN03013 256 FDNPANPKIHYETTGPEIWDDTK-----GKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHK 330 (429)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcc
Confidence 88998874 89999999999985 46999999999999999999999999999999999999986542 1122334
Q ss_pred HhhhCCC--------CCCCCeEEeccCCccchHHHHHHH
Q 021545 266 LDGLNAG--------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 266 ~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
++|++.+ ..+|+++.|+|.+.+..+..+..+
T Consensus 331 i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r~La~~ 369 (429)
T PLN03013 331 IQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALK 369 (429)
T ss_pred cCcccCCcCCHhHHHHhccEEEEECHHHHHHHHHHHHHH
Confidence 5677753 237999999999999888877753
No 26
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.3e-36 Score=293.29 Aligned_cols=228 Identities=18% Similarity=0.179 Sum_probs=183.2
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++....++|||.+ +++|++ |+|+|++|+ +||+|+|.+.+++.++. +.+.++||++ |+||||+++|++
T Consensus 15 ~i~~~i~~TPl~~--~~~ls~~~g~~i~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 88 (404)
T PRK08198 15 RLKGVVRRTPLEY--SRTLSELTGAEVYLKCENLQR--TGSFKIRGAYNKIASLSEEERARGVVAA--SAGNHAQGVAYA 88 (404)
T ss_pred HHhccCCCCCcee--hhhHHHHhCCEEEEEECCCCC--CCCCHHHHHHHHHHhccHhhcCCEEEEE--CCCHHHHHHHHH
Confidence 5667789999999 677664 799999988 79999999999999877 4456889975 569999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|++|||..++ ..|+.+++.|||+|+.++. .|++ .++. +++++++.+ .|++ .++.|+
T Consensus 89 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~-----~~~~-a~~~~~~~g-~~~~-~~~~~~ 151 (404)
T PRK08198 89 ASLLGIKATIVMPETAP--------LSKVKATRSYGAEVVLHGD-VYDE-----ALAK-AQELAEETG-ATFV-HPFDDP 151 (404)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHH-----HHHH-HHHHHHhcC-CEec-CCCCCc
Confidence 99999999999999875 3579999999999999975 3553 2233 334444332 3333 344577
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------HH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DY 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~~ 261 (311)
....||.|++.||++|++ ++|+||+|+|||||++|++.++|...|++|||||++.+++.+.. ..
T Consensus 152 ~~~~g~~t~a~EI~~q~~------~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~ 225 (404)
T PRK08198 152 DVIAGQGTIGLEILEDLP------DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELES 225 (404)
T ss_pred cHHHHHHHHHHHHHHhCC------CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCC
Confidence 888999999999999985 48999999999999999999999999999999999999876532 23
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+.++.+++++. ...|+++.|+|.+.+..+..+..
T Consensus 226 ~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 270 (404)
T PRK08198 226 VDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARAILLLLE 270 (404)
T ss_pred CCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 34556666541 33799999999999988888764
No 27
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5e-36 Score=292.22 Aligned_cols=229 Identities=18% Similarity=0.210 Sum_probs=183.1
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC-CCEEEEeCCccchHHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQG-ADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G-~~~vVt~g~s~GNhg~AlA~ 110 (311)
.++...+++|||++ ++.|++ |+|+|++++ +||||+|++.+++..+.+.+ .+.||++ |+||||+|+|+
T Consensus 17 ~~~~~~i~~TPl~~--~~~ls~~~g~~v~~K~E~~np--tGSfK~Rga~~~i~~~~~~~~~~gvv~a--SsGN~g~a~A~ 90 (406)
T PRK06382 17 SYLEGYLNRTPLIH--STTFGDEYGGDIYFKLENFQK--TGSFKSRGAVFKFSKLSEDELRNGVITA--SAGNHAQGVAY 90 (406)
T ss_pred HHHhCcCCCCCeeE--hhhhHHHhCCEEEEEecCCCC--CCCCHHHHHHHHHHhcchhccCCeEEEE--CCCHHHHHHHH
Confidence 46777889999999 667654 789999987 79999999999998776554 3568864 56999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+.+|++|++|||+..+ ..|+..++.|||+|++++. .|++ . .+.+++++++.+..|+.| +.|
T Consensus 91 aa~~~G~~~~ivmp~~~~--------~~k~~~~~~~GA~Vv~~~~-~~~~-----a-~~~a~~la~~~~~~~v~~--~~~ 153 (406)
T PRK06382 91 AASINGIDAKIVMPEYTI--------PQKVNAVEAYGAHVILTGR-DYDE-----A-HRYADKIAMDENRTFIEA--FND 153 (406)
T ss_pred HHHHcCCCEEEEEcCCCH--------HHHHHHHHHcCCEEEEECC-CHHH-----H-HHHHHHHHHhcCCEecCc--cCC
Confidence 999999999999999875 3578899999999999986 3543 2 234455655443334333 457
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------- 260 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~---------- 260 (311)
+..+.|+.+++.||++|++ .+|+||+|+|+||+++|++.++++.++++|||||++.+++.+...
T Consensus 154 ~~~i~g~~t~~~Ei~eq~~------~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~ 227 (406)
T PRK06382 154 RWVISGQGTIGLEIMEDLP------DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHT 227 (406)
T ss_pred hHHHHHHHHHHHHHHHhcC------CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecC
Confidence 8888899999999999985 499999999999999999999999999999999999998764211
Q ss_pred HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 261 YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 261 ~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...++++|+++. ...|+++.|+|.+++..+..++.
T Consensus 228 ~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~ 273 (406)
T PRK06382 228 SGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFE 273 (406)
T ss_pred CCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHHHHHHH
Confidence 123456677662 23799999999999999877654
No 28
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=8.3e-36 Score=278.69 Aligned_cols=224 Identities=17% Similarity=0.121 Sum_probs=174.9
Q ss_pred CCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA~~a 112 (311)
.+++|||++ +++|+. |+|+|++++ +||||+|++.+++.+|+++|. ++||+ +|+||||+++|++|
T Consensus 5 ~ig~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~--aSsGN~g~alA~~a 78 (290)
T TIGR01138 5 TVGNTPLVR--LQRMGPENGSEVWLKLEGNNP--AGSVKDRPALSMIVEAEKRGEIKPGDVLIE--ATSGNTGIALAMIA 78 (290)
T ss_pred hCCCCceEE--ccccccCCCCeEEEEEccCCC--CccHHHHHHHHHHHHHHHcCCCCCCCEEEE--ECCChHHHHHHHHH
Confidence 469999999 666653 789999987 799999999999999999987 67886 47899999999999
Q ss_pred HHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 113 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
+.+|++|++|||+..+ ..|+.+++.|||+|+.++.+ .++ .. .++++++.++.+..|+ .++.|+
T Consensus 79 ~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~v~~v~~~~~~~-----~~-~~~a~~l~~~~~~~~~--~~~~~~ 142 (290)
T TIGR01138 79 ALKGYRMKLLMPDNMS--------QERKAAMRAYGAELILVTKEEGME-----GA-RDLALELANRGEGKLL--DQFNNP 142 (290)
T ss_pred HHcCCeEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCCCChH-----HH-HHHHHHHHHhCCCCCC--CccCCc
Confidence 9999999999999875 35899999999999999753 132 22 3345556655444333 445565
Q ss_pred hHHH-HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHhHhhhC
Q 021545 192 IGTW-GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLLDGLN 270 (311)
Q Consensus 192 ~~~~-Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~~~g~~ 270 (311)
.+.. ||.+++.||++|+. ..+|+||+|+|||||++|++.++|+.++++|||||++.++.... .+..+.+++.
T Consensus 143 ~~~~~~~~t~~~Ei~~q~~-----~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~--g~~~~~~~~~ 215 (290)
T TIGR01138 143 DNPYAHYTSTGPEIWQQTG-----GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIP--GIRRWPTEYL 215 (290)
T ss_pred ccHHHHhHhHHHHHHHHcC-----CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCcc--CCCCCCCCcC
Confidence 5554 47899999999985 35899999999999999999999999999999999999875421 1111111111
Q ss_pred C----CCCCCCeEEeccCCccchHHHHHH
Q 021545 271 A----GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 271 ~----~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
. ....|+++.|+|.+.+..+..++.
T Consensus 216 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~ 244 (290)
T TIGR01138 216 PGIFDASLVDRVLDIHQRDAENTMRELAV 244 (290)
T ss_pred CcccChhhCcEEEEECHHHHHHHHHHHHH
Confidence 1 123689999999999988887765
No 29
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.5e-36 Score=299.36 Aligned_cols=229 Identities=21% Similarity=0.192 Sum_probs=184.6
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.....+|||++ +++|++ |+||||+++ +||||+|++.+++..+. +++.++||++ |+||||+|+|++
T Consensus 13 ~v~~~~~~TPL~~--~~~Ls~~~g~~i~lK~E~lqp--tgSfK~RgA~n~i~~l~~~~~~~gvV~a--SaGNha~avA~a 86 (504)
T PRK09224 13 RVYDVAQETPLEK--APKLSARLGNQVLLKREDLQP--VFSFKLRGAYNKMAQLTEEQLARGVITA--SAGNHAQGVALS 86 (504)
T ss_pred HhcCcCCCCCcee--hhHhHHHhCCEEEEEecCCCC--CCCChHHHHHHHHHhhhHHhcCCEEEEE--CcCHHHHHHHHH
Confidence 6777789999999 677764 789999986 79999999999888764 3456788975 579999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|++|||+.+| ..|+..++.+||+|++++. .|++ ..+ .+++++++.+..|+.|+ .|+
T Consensus 87 a~~lGi~~~IvmP~~tp--------~~K~~~~r~~GA~Vi~~g~-~~~~-----a~~-~a~~l~~~~g~~~v~~f--~~~ 149 (504)
T PRK09224 87 AARLGIKAVIVMPVTTP--------DIKVDAVRAFGGEVVLHGD-SFDE-----AYA-HAIELAEEEGLTFIHPF--DDP 149 (504)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHH-----HHH-HHHHHHHhcCCEEeCCC--CCc
Confidence 99999999999999875 3578999999999999986 4654 223 34455554434455544 477
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------HH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DY 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~~ 261 (311)
..+.|+.|++.||++|++ ..+|+||+|+|||||++|++.++|...|++|||||++.+++.+.. +.
T Consensus 150 ~~i~G~gTi~~EI~~q~~-----~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~ 224 (504)
T PRK09224 150 DVIAGQGTIAMEILQQHP-----HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQ 224 (504)
T ss_pred HHHHhHHHHHHHHHHhcc-----CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCC
Confidence 888899999999999985 249999999999999999999999999999999999999876532 22
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+..+++++++. ...|+++.|+|.+++..+..+.-
T Consensus 225 ~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~ 269 (504)
T PRK09224 225 VGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFE 269 (504)
T ss_pred CCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 33456666541 34799999999999999988754
No 30
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=9.7e-36 Score=290.33 Aligned_cols=230 Identities=18% Similarity=0.179 Sum_probs=179.6
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.....+|||++ ++.|++ |+|+|++++ +||||+|++.+++..+. +++.++||++ |+||||+++|++
T Consensus 9 ~i~~~i~~TPl~~--~~~ls~~~g~~iy~K~E~~~p--tGSfK~RgA~~~i~~l~~~~~~~gvv~a--SsGN~g~a~A~~ 82 (409)
T TIGR02079 9 RLKEVVPHTPLQL--NERLSEKYGANIYLKREDLQP--VRSYKIRGAYNFLKQLSDAQLAKGVVCA--SAGNHAQGFAYA 82 (409)
T ss_pred HHhCcCCCCCccc--cHHHHHHhCCEEEEEecCCCC--CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHHHHHH
Confidence 6677889999999 667664 789999997 79999999999997743 3345678865 579999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEE---EEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI---ELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV---~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
|+++|++|++|||+.+| ..|+..++.|||+| +.++. .|++ .++.+. ++.++.+. ++++. +
T Consensus 83 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~vv~v~~~g~-~~~~-----a~~~a~-~~~~~~g~-~~~~~-~ 145 (409)
T TIGR02079 83 CRHLGVHGTVFMPATTP--------KQKIDRVKIFGGEFIEIILVGD-TFDQ-----CAAAAR-EHVEDHGG-TFIPP-F 145 (409)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCCeeEEEEeCC-CHHH-----HHHHHH-HHHHhcCC-EEeCC-C
Confidence 99999999999999875 35789999999974 44443 3543 333333 34443323 44433 3
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH--------
Q 021545 189 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD-------- 260 (311)
Q Consensus 189 ~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~-------- 260 (311)
.|+....|+.+++.||++|++ ..||+||+|+|+||+++|++.++|..+|++|||||++++++.+...
T Consensus 146 ~~~~~~~g~~ti~~Ei~~q~~-----~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 220 (409)
T TIGR02079 146 DDPRIIEGQGTVAAEILDQLP-----EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVT 220 (409)
T ss_pred CCHhHhhhhHHHHHHHHHhcC-----CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcee
Confidence 578888899999999999986 3599999999999999999999999999999999999998765321
Q ss_pred --HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 261 --YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 261 --~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
...++++|+++. ...|+++.|+|.+++.++..++.+
T Consensus 221 ~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~ 269 (409)
T TIGR02079 221 LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNL 269 (409)
T ss_pred cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHh
Confidence 223456666652 237899999999999988887653
No 31
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.4e-35 Score=280.72 Aligned_cols=230 Identities=18% Similarity=0.204 Sum_probs=181.5
Q ss_pred ccccCCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.+..++|||++ +++|+. |+|+|++++ +||||+|++.+++.+++++|.++||+. |+||||+|+|++
T Consensus 15 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~vv~~--SsGN~g~alA~~ 88 (324)
T cd01563 15 IVSLGEGNTPLVR--APRLGERLGGKNLYVKDEGLNP--TGSFKDRGMTVAVSKAKELGVKAVACA--STGNTSASLAAY 88 (324)
T ss_pred cccCCCCCCceee--chhhHhhcCCCceEEEecCCCC--cccHHHhhHHHHHHHHHHcCCCEEEEe--CCCHHHHHHHHH
Confidence 6899999999999 666542 789999986 899999999999999999999999974 689999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|++|||+..+ ..|+.+++++||+|+.++. .|++ ..+ .++++.++. .+++ .++.|+
T Consensus 89 a~~~G~~~~ivvp~~~~--------~~k~~~l~~~GA~Vi~~~~-~~~~-----~~~-~a~~~~~~~--~~~~-~~~~n~ 150 (324)
T cd01563 89 AARAGIKCVVFLPAGKA--------LGKLAQALAYGATVLAVEG-NFDD-----ALR-LVRELAEEN--WIYL-SNSLNP 150 (324)
T ss_pred HHHcCCceEEEEeCCCC--------HHHHHHHHHcCCEEEEECC-cHHH-----HHH-HHHHHHHhc--Ceec-cCCCCc
Confidence 99999999999999874 3589999999999999986 3543 222 344555543 3333 345789
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCC------CCCeEEEEeccCCchhhHH-----
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT------LKAKVHAFSVCDDPDYFYD----- 260 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~------~~~rVigV~~~g~~~~~~~----- 260 (311)
.++.||.+++.||++|+.. ..+|+||+|+|||||++|++.+++... +++|||||++.+++.....
T Consensus 151 ~~~~g~~t~~~Ei~~q~~~----~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~ 226 (324)
T cd01563 151 YRLEGQKTIAFEIAEQLGW----EVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGK 226 (324)
T ss_pred ceecchhhhHHHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCC
Confidence 9999999999999999851 259999999999999999999999764 5899999999987644321
Q ss_pred -------HHHHhHhhhCCC-------------CCCCCeEEeccCCccchHHHHHHH
Q 021545 261 -------YTQGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 261 -------~i~~~~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
....++++++.+ ...++++.|+|.+.+.++..+...
T Consensus 227 ~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~ 282 (324)
T cd01563 227 DDIEPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLART 282 (324)
T ss_pred CccCcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhc
Confidence 112233444432 113689999999998888777653
No 32
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=4.6e-35 Score=288.90 Aligned_cols=233 Identities=17% Similarity=0.119 Sum_probs=183.0
Q ss_pred cccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC----CEEEEeCCccchHHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA----DCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~----~~vVt~g~s~GNhg~AlA 109 (311)
+....++|||++ +++|+. |+|+|++++ +||||+|++.+++.+|+++|+ ++||++ |+||||+|+|
T Consensus 5 ~~~~~~~TPl~~--~~~l~~~~~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~--ssGN~g~alA 78 (454)
T TIGR01137 5 IIDLIGNTPLVR--LNKVSKGIKCELLAKCEFFNP--GGSVKDRIALRMIEDAEASGRLKPGDTIIEP--TSGNTGIGLA 78 (454)
T ss_pred hHHhcCCCceEE--ccccCCCCCceEEEEEhhcCC--CcchHHHHHHHHHHHHHHcCCCCCCCEEEEe--CCcHHHHHHH
Confidence 344569999999 566654 789999987 799999999999999999987 778875 7899999999
Q ss_pred HHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 110 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
++|+.+|++|++|||+..+ ..|+.+++.|||+|+.++.. .++. .... .+.++++++++++ ++++.++
T Consensus 79 ~~a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~~~~~~~--~~~~-~~~a~~l~~~~~~-~~~~~~~ 146 (454)
T TIGR01137 79 LVAAIKGYKCIIVLPEKMS--------NEKVDVLKALGAEIVRTPTAAAFDS--PESH-IGVAKRLVREIPG-AHILDQY 146 (454)
T ss_pred HHHHHcCCeEEEEeCCCcC--------HHHHHHHHHCCCEEEEcCCccCCCc--hHHH-HHHHHHHHHhCCC-cEecccC
Confidence 9999999999999999875 35899999999999999752 1332 1112 2234456665444 4567777
Q ss_pred CchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHH-----
Q 021545 189 SNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT----- 262 (311)
Q Consensus 189 ~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i----- 262 (311)
.|+.+. .||.+++.||++|++ ..||+||+|+|||||++|++.++++..+++||+||++++++.+....+
T Consensus 147 ~~~~~~~~~~~t~~~Ei~~q~~-----~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~ 221 (454)
T TIGR01137 147 NNPSNPLAHYDGTGPEILEQCE-----GKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGR 221 (454)
T ss_pred CChhhHHHHHHhhHHHHHHHhC-----CCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCC
Confidence 777764 689999999999986 359999999999999999999999999999999999999875432211
Q ss_pred -HHhHhhhCCC--------CCCCCeEEeccCCccchHHHHHH
Q 021545 263 -QGLLDGLNAG--------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 263 -~~~~~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...+++++.+ ...|+++.|+|.+.+..+..+..
T Consensus 222 ~~~~~~g~~~~~~~~~~~~~~~d~~~~V~~~e~~~a~~~l~~ 263 (454)
T TIGR01137 222 TPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIK 263 (454)
T ss_pred CCccCCCCCCCCCCCcCCchhCCeEEEECHHHHHHHHHHHHH
Confidence 1245565542 12678999999988887776654
No 33
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.1e-35 Score=285.54 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=178.4
Q ss_pred CCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC-CEEEEeCCccchHHHHHHHHHHHcCCcE
Q 021545 47 TPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA-DCIITIGGIQSNHCRAAAVAAKYLNLDC 119 (311)
Q Consensus 47 TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~-~~vVt~g~s~GNhg~AlA~~a~~~Gl~~ 119 (311)
|||++ +++|++ |+|+|++|+ +||+|+|.+.+++.++.+++. ++||++ |+||||+++|++|+++|++|
T Consensus 1 TPl~~--~~~ls~~~g~~i~~K~E~~~p--tgS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIY--STTLSDITGSEVYLKLENLQK--TGSFKIRGALNKIANLSEDQRQRGVVAA--SAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCcee--hHHHHHHhCCeEEEEecCCCC--CCCcHHHHHHHHHHhcchhccCCEEEEE--CCCHHHHHHHHHHHHcCCCE
Confidence 89998 666664 799999997 799999999999999988775 568864 66999999999999999999
Q ss_pred EEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHH
Q 021545 120 YLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIE 199 (311)
Q Consensus 120 ~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t 199 (311)
++|||+.++ ..|+.+++.|||+|++++. .|++ . .+.+++++++.+ .++++ ++.|+..+.||.+
T Consensus 75 ~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----a-~~~a~~~~~~~~-~~~~~-~~~~~~~~~g~~t 137 (380)
T TIGR01127 75 VIVMPESAP--------PSKVKATKSYGAEVILHGD-DYDE-----A-YAFATSLAEEEG-RVFVH-PFDDEFVMAGQGT 137 (380)
T ss_pred EEEEcCCCc--------HHHHHHHHHCCCEEEEECC-CHHH-----H-HHHHHHHHHhcC-CEecC-CCCChhhhhhhHH
Confidence 999999875 3589999999999999975 3543 2 233445655443 34433 3457888899999
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH----------HHHHHhHhhh
Q 021545 200 AIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------DYTQGLLDGL 269 (311)
Q Consensus 200 ~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------~~i~~~~~g~ 269 (311)
++.||++|++ .+|+||+|+|||||++|++.++|...|++|||||++.+++.+.. ..+.++++|+
T Consensus 138 ~~~Ei~~q~~------~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~ 211 (380)
T TIGR01127 138 IGLEIMEDIP------DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGI 211 (380)
T ss_pred HHHHHHHhCC------CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecch
Confidence 9999999984 49999999999999999999999999999999999999876431 1234556666
Q ss_pred CCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 270 NAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 270 ~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
++. ...|+++.|+|.+++..+..++.+
T Consensus 212 ~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~ 249 (380)
T TIGR01127 212 AVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLER 249 (380)
T ss_pred hCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHh
Confidence 641 247999999999999998877643
No 34
>PLN02970 serine racemase
Probab=100.00 E-value=3.3e-35 Score=279.07 Aligned_cols=228 Identities=18% Similarity=0.132 Sum_probs=179.8
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHH-cCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~-~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++...+++|||++ +++|++ |+|+|++|+ +||+|+|.+.+++..+.+ .+.++||++ |+||||+|+|++
T Consensus 20 ~i~~~i~~TPL~~--~~~l~~~~g~~i~~K~E~~np--tGSfKdRga~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 93 (328)
T PLN02970 20 RIAPFIHRTPVLT--SSSLDALAGRSLFFKCECFQK--GGAFKFRGACNAIFSLSDDQAEKGVVTH--SSGNHAAALALA 93 (328)
T ss_pred HHhCcCCCCCeee--chhhHHhhCCeEEEEecCCCC--CCCcHHHHHHHHHHHhhHhhcCCeEEEE--CCcHHHHHHHHH
Confidence 4556679999999 666653 789999987 699999999999998864 445778864 689999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|++|||+..+ ..|+..+++|||+|+.++.+ ++. . .+.+++++++. ..|++ .++.|+
T Consensus 94 a~~~G~~~~ivvp~~~~--------~~k~~~~~~~GA~Vi~~~~~-~~~-----~-~~~a~~la~~~-g~~~~-~~~~n~ 156 (328)
T PLN02970 94 AKLRGIPAYIVVPKNAP--------ACKVDAVIRYGGIITWCEPT-VES-----R-EAVAARVQQET-GAVLI-HPYNDG 156 (328)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHhcCCEEEEeCCC-HHH-----H-HHHHHHHHHhc-CCEEe-CCCCCc
Confidence 99999999999999875 35788999999999999863 432 2 23344555543 34544 344577
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
..+.||.+++.||++|++ .||+||+|+|||||++|++.++|+.++++|||+|++.+++.+... .
T Consensus 157 ~~~~g~~t~g~Ei~~ql~------~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~ 230 (328)
T PLN02970 157 RVISGQGTIALEFLEQVP------ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPV 230 (328)
T ss_pred chhhehHHHHHHHHHhcc------CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCC
Confidence 788999999999999985 499999999999999999999999999999999999998754321 1
Q ss_pred HHHhHhhhCCC----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..++.++++.. ...|+++.|+|.+.+.++..+..
T Consensus 231 ~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~ 274 (328)
T PLN02970 231 TNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYE 274 (328)
T ss_pred CCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHH
Confidence 12344444421 23689999999999998887764
No 35
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=4.3e-35 Score=277.06 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=178.0
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++....++|||.+ +++|++ |+|+|++++ +||||+|++.+++.++. +++.++||+ +|+||||+|+|++
T Consensus 12 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~--aSsGN~g~alA~~ 85 (317)
T TIGR02991 12 RISGRVEETPLVE--SPSLSELCGVPVHLKLEHRQT--TGSFKLRGATNAVLSLSDTQRAAGVVA--ASTGNHGRALAYA 85 (317)
T ss_pred HHhCcCCCCCcee--chhhHHhhCCeEEEEeccCCC--CCCcHHHHHHHHHHhhhHhccCCeEEE--ECCCHHHHHHHHH
Confidence 5666779999999 566653 789999987 79999999999998765 445677885 4789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|++|||+..+ ..|+..++.|||+|+.++.. |++ ..+ .++++.++. ..|++ .++.|+
T Consensus 86 a~~~G~~~~v~~p~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~-----~~~-~a~~~~~~~-g~~~~-~~~~n~ 148 (317)
T TIGR02991 86 AAEEGVRATICMSELVP--------QNKVDEIRRLGAEVRIVGRS-QDD-----AQE-EVERLVADR-GLTML-PPFDHP 148 (317)
T ss_pred HHHhCCCEEEEcCCCCC--------HHHHHHHHHcCCEEEEeCCC-HHH-----HHH-HHHHHHHhc-CCEee-CCCCCh
Confidence 99999999999999875 35899999999999999863 543 212 233444432 23433 345688
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
....||.+++.||++|++ .+|+||+|+|+|||++|++.++|+.++++|||||++++.+..... .
T Consensus 149 ~~~~g~~t~a~Ei~~q~~------~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~ 222 (317)
T TIGR02991 149 DIVAGQGTLGLEVVEQMP------DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAE 222 (317)
T ss_pred HHHhhHHHHHHHHHHhCC------CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCC
Confidence 889999999999999985 389999999999999999999999999999999999876544321 1
Q ss_pred HHHhHhhh----CC---------CCCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGL----NA---------GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~----~~---------~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..++++++ +. ...+|+++.|+|.+.+..+..+..
T Consensus 223 ~~tia~~l~~g~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~ 269 (317)
T TIGR02991 223 LPTLADSLGGGIGLDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYA 269 (317)
T ss_pred CCChhhhhhhccCCCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 12344433 32 133799999999999988877765
No 36
>PLN02565 cysteine synthase
Probab=100.00 E-value=9.5e-35 Score=275.17 Aligned_cols=232 Identities=18% Similarity=0.123 Sum_probs=181.8
Q ss_pred cccCCCCCCccccCCCCCC-----C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC-----CEEEEeCCccchHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLP-----H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRAA 108 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls-----~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~-----~~vVt~g~s~GNhg~Al 108 (311)
+...+++|||.+ ++.++ + |+|.|.+|+ +||+|+|.+.+++..+++.|. ++||+ +|+||||+|+
T Consensus 9 ~~~~ig~TPLv~--l~~l~~~~~~~i~~K~E~~nP--tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~--aSsGN~g~al 82 (322)
T PLN02565 9 VTELIGKTPLVY--LNNVVDGCVARIAAKLEMMEP--CSSVKDRIGYSMITDAEEKGLIKPGESVLIE--PTSGNTGIGL 82 (322)
T ss_pred HHHHhCCCceEE--ccccCCCCCceEEEEecccCC--ccchHHHHHHHHHHHHHHcCCCCCCCcEEEE--ECCChHHHHH
Confidence 556779999999 56552 2 789999998 799999999999999998874 45776 4789999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 109 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 109 A~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
|++|+.+|++|+||||+..+ ..|+.+++.|||+|+.++.. +. ..+.++ .+++++++.+..|++ .++
T Consensus 83 A~~a~~~G~~~~ivvp~~~~--------~~k~~~i~~~GA~V~~~~~~-~~---~~~~~~-~a~~l~~~~~~~~~~-~q~ 148 (322)
T PLN02565 83 AFMAAAKGYKLIITMPASMS--------LERRIILLAFGAELVLTDPA-KG---MKGAVQ-KAEEILAKTPNSYIL-QQF 148 (322)
T ss_pred HHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCC-CC---cHHHHH-HHHHHHHhCCCcEee-ccc
Confidence 99999999999999999875 36899999999999999763 21 112333 344555443344544 456
Q ss_pred CchhH-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH-HHHHHhH
Q 021545 189 SNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY-DYTQGLL 266 (311)
Q Consensus 189 ~n~~~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~-~~i~~~~ 266 (311)
.|+.+ ..||.+++.||++|+. ..+|+||+|+||||+++|++.++|+..+++|||||++.+++.+.. ......+
T Consensus 149 ~n~~n~~~~~~t~a~Ei~~q~~-----~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~ 223 (322)
T PLN02565 149 ENPANPKIHYETTGPEIWKGTG-----GKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKI 223 (322)
T ss_pred CCHhHHHHHHHHHHHHHHHhcC-----CCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccC
Confidence 67655 3579999999999985 359999999999999999999999999999999999999865421 1223355
Q ss_pred hhhCCC--------CCCCCeEEeccCCccchHHHHHHH
Q 021545 267 DGLNAG--------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 267 ~g~~~~--------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
++++.+ ..+|+++.|+|.+.+..+..++.+
T Consensus 224 ~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~~l~~~ 261 (322)
T PLN02565 224 QGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALK 261 (322)
T ss_pred CCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHHHHHHH
Confidence 676662 137899999999999998887753
No 37
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=7.4e-35 Score=282.77 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=176.9
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCC---EEEEeCCccchHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGAD---CIITIGGIQSNHCRAA 108 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~---~vVt~g~s~GNhg~Al 108 (311)
..+...+++|||++ ++.|+. |+|.|++|+ +||+|+|.+.+++.+|+++|.. .+|+. +|+||||+|+
T Consensus 45 ~~~~~~ig~TPLv~--~~~l~~~~g~~v~~KlE~~nP--tGS~KdR~A~~~i~~a~~~g~~~~~g~Vve-aSSGN~g~al 119 (423)
T PLN02356 45 NGLIDAIGNTPLIR--INSLSEATGCEILGKCEFLNP--GGSVKDRVAVKIIEEALESGQLFPGGVVTE-GSAGSTAISL 119 (423)
T ss_pred hhHHhhcCCCceEE--CcccccccCCEEEEEeccCCC--CCCHHHHHHHHHHHHHHhCCccCCCCEEEE-eCCHHHHHHH
Confidence 34555679999999 666653 789999998 7999999999999999987742 34543 5789999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc------cccccCcHHHHHHHHHHHHHcC----
Q 021545 109 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE------EYSKIGSVTLTNILKEKLLKEG---- 178 (311)
Q Consensus 109 A~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~------~~~~~~~~~~~~~~~~~l~~~g---- 178 (311)
|++|+.+|++|++|||+..+ ..|+.++++|||+|+.++.. .|.. ........+++++++.
T Consensus 120 A~~aa~~G~~~~ivvP~~~s--------~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~--~a~~~~~~a~e~a~~~~~~~ 189 (423)
T PLN02356 120 ATVAPAYGCKCHVVIPDDVA--------IEKSQILEALGATVERVRPVSITHKDHYVN--IARRRALEANELASKRRKGS 189 (423)
T ss_pred HHHHHHcCCcEEEEECCCCc--------HHHHHHHHHcCCEEEEECCccCCCcchhHH--HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999875 36899999999999999531 1210 0000001122222210
Q ss_pred ---------------------------CCcEEecCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhH
Q 021545 179 ---------------------------RRPYVIPVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 230 (311)
Q Consensus 179 ---------------------------~~~y~ip~g~~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 230 (311)
...++++.++.|+.+. .++..++.||++|++ +.+|+||+++|||||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~-----g~~D~vVv~vGtGGti 264 (423)
T PLN02356 190 ETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQ-----GNLDAFVAAAGTGGTL 264 (423)
T ss_pred ccccccccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcC-----CCCCEEEeCCCchHHH
Confidence 0123456777787763 223446999999985 3699999999999999
Q ss_pred HHHHHHHhhCCCCCeEEEEeccCCchhhH--------------H----HHHHhHhhhCCC--------CCCCCeEEeccC
Q 021545 231 AGLSLGSWLGTLKAKVHAFSVCDDPDYFY--------------D----YTQGLLDGLNAG--------VDSRDIVNIQNV 284 (311)
Q Consensus 231 aGl~~~~~~~~~~~rVigV~~~g~~~~~~--------------~----~i~~~~~g~~~~--------~~~~dvv~v~e~ 284 (311)
+|+++++|+.+|++||++||+.++..+.. . ....+++|++.+ ..+|+++.|+|.
T Consensus 265 ~Gva~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ 344 (423)
T PLN02356 265 AGVSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDK 344 (423)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHH
Confidence 99999999999999999999998763311 0 013467788763 237999999999
Q ss_pred CccchHHHHHH
Q 021545 285 SVYMTFKNILM 295 (311)
Q Consensus 285 ~~~~~~~~~~~ 295 (311)
+.+..+..++.
T Consensus 345 ea~~a~r~L~~ 355 (423)
T PLN02356 345 EAVEMSRYLLK 355 (423)
T ss_pred HHHHHHHHHHH
Confidence 99888877764
No 38
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=3.4e-35 Score=278.12 Aligned_cols=230 Identities=16% Similarity=0.166 Sum_probs=179.7
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHH-cCCCEEEEeCCccchHHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~-~G~~~vVt~g~s~GNhg~AlA~ 110 (311)
.++....++|||++ +++|++ |+|+|++++ +||+|+|.+.+++.++.+ .+.++||++ |+||||+|+|+
T Consensus 16 ~~i~~~~~~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGS~K~R~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~ 89 (321)
T PRK07048 16 ARLAGVAHRTPVLT--SRTADARTGAQVFFKCENFQR--MGAFKFRGAYNALSQFSPEQRRAGVVTF--SSGNHAQAIAL 89 (321)
T ss_pred HHhhCCCCCCCCcc--chhhHHhcCCeEEEEeccCCC--CCCeeHHHHHHHHHhhhHhhcCCcEEEe--CCCHHHHHHHH
Confidence 36677789999999 666653 789999997 799999999999998774 456788875 56999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+.+|++|++|||+..+ ..|+.+++.|||+|+.++.. +++ . .+.+++++++.+ .|+++ ++.|
T Consensus 90 ~a~~~G~~~~vvvp~~~~--------~~k~~~~~~~GAeV~~~~~~-~~~-----~-~~~a~~l~~~~g-~~~~~-~~~~ 152 (321)
T PRK07048 90 SARLLGIPATIVMPQDAP--------AAKVAATRGYGGEVVTYDRY-TED-----R-EEIGRRLAEERG-LTLIP-PYDH 152 (321)
T ss_pred HHHHcCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHH-----H-HHHHHHHHHhcC-CEEEC-CCCC
Confidence 999999999999999875 35899999999999999853 432 1 234555665543 34433 3346
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------- 260 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~---------- 260 (311)
+....||.+++.||++|++ .||+||+|+|||||++|++.++++.++++|||||++++++.+...
T Consensus 153 ~~~~~g~~t~~~EI~~q~~------~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~ 226 (321)
T PRK07048 153 PHVIAGQGTAAKELFEEVG------PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHID 226 (321)
T ss_pred cchhhccchHHHHHHhhcC------CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCC
Confidence 6777888899999999984 599999999999999999999999999999999999997643211
Q ss_pred HHHHhHhhhCC-----------CCCCCCeEEeccCCccchHHHHHHH
Q 021545 261 YTQGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 261 ~i~~~~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
...++.+++.. ....|+++.|+|.+.+..+..+...
T Consensus 227 ~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~ 273 (321)
T PRK07048 227 TPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAER 273 (321)
T ss_pred CCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHh
Confidence 12223344332 1347899999999999888877643
No 39
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.3e-34 Score=273.88 Aligned_cols=186 Identities=21% Similarity=0.184 Sum_probs=155.3
Q ss_pred CCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcC
Q 021545 44 HFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLN 116 (311)
Q Consensus 44 ~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~G 116 (311)
.++|||++ +++|++ |+|+|++++ +||||+|++.+++.+|+++|.++||+ +|+||||+|+|++|+.+|
T Consensus 13 ~g~TPL~~--~~~l~~~~G~~~i~~K~E~~np--tGS~K~R~a~~~l~~a~~~g~~~lv~--aSsGN~g~alA~~aa~~G 86 (319)
T PRK06381 13 PGGTPLLR--ARKLEEELGLRKIYLKFEGANP--TGTQKDRIAEAHVRRAMRLGYSGITV--GTCGNYGASIAYFARLYG 86 (319)
T ss_pred CCCCceeE--hHhhHHhcCCceEEEEecCCCC--ccCcHHHHHHHHHHHHHHcCCCEEEE--eCCcHHHHHHHHHHHHcC
Confidence 58999999 556542 789999987 79999999999999999999999986 467999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch-hHHH
Q 021545 117 LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS-IGTW 195 (311)
Q Consensus 117 l~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~-~~~~ 195 (311)
++|++|||...+ ..|+.+++.+||+|+.++.. |++ ..+. ++++.++ +..|+++.++.|+ .++.
T Consensus 87 ~~~~ivvp~~~~--------~~~~~~l~~~GA~V~~~~~~-~~~-----~~~~-a~~~~~~-~~~~~~~~~~~n~~~~~~ 150 (319)
T PRK06381 87 LKAVIFIPRSYS--------NSRVKEMEKYGAEIIYVDGK-YEE-----AVER-SRKFAKE-NGIYDANPGSVNSVVDIE 150 (319)
T ss_pred CcEEEEECCCCC--------HHHHHHHHHcCCEEEEcCCC-HHH-----HHHH-HHHHHHH-cCcEecCCCCCCcchHhh
Confidence 999999999864 35899999999999999863 543 2232 3334433 2467665554465 6889
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC------CCCCeEEEEeccCCch
Q 021545 196 GYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLKAKVHAFSVCDDPD 256 (311)
Q Consensus 196 Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~------~~~~rVigV~~~g~~~ 256 (311)
||.+++.||++|++ ..||+||+|+|||||++|++.+++++ ++.+|||+|++.+.+.
T Consensus 151 G~~t~a~Ei~~ql~-----~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~ 212 (319)
T PRK06381 151 AYSAIAYEIYEALG-----DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQ 212 (319)
T ss_pred hHHHHHHHHHHHhC-----CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCH
Confidence 99999999999985 35999999999999999999999987 7899999999998754
No 40
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=7.9e-35 Score=277.43 Aligned_cols=227 Identities=20% Similarity=0.167 Sum_probs=180.5
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC--CEEEEeCCccchHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA--DCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~--~~vVt~g~s~GNhg~AlA~ 110 (311)
++...+++|||++ +++|++ |+|+|++++ +||+|+|++.+++.+++++|. ++||++ |+||||+|+|+
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~K~R~a~~~v~~a~~~g~~~~~vv~~--SsGN~g~alA~ 89 (338)
T PRK06608 16 RIKQYLHLTPIVH--SESLNEMLGHEIFFKVESLQK--TGAFKVRGVLNHLLELKEQGKLPDKIVAY--STGNHGQAVAY 89 (338)
T ss_pred HHhCcCcCCCccc--hHhHHHHhCCEEEEEeCCCCC--CCCcHHHHHHHHHHHhhhhcCcCCeEEEE--CCCHHHHHHHH
Confidence 4666789999999 677653 789999987 799999999999999999987 688864 78999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+.+|++|++|||+..+ ..|+.+++.+||+|+.++. +++ ..+.+ ++ .++ +..|+++. +.|
T Consensus 90 ~a~~~G~~~~vv~p~~~~--------~~k~~~l~~~GA~V~~~~~--~~~-----~~~~a-~~-~~~-~~~~~~~~-~~~ 150 (338)
T PRK06608 90 ASKLFGIKTRIYLPLNTS--------KVKQQAALYYGGEVILTNT--RQE-----AEEKA-KE-DEE-QGFYYIHP-SDS 150 (338)
T ss_pred HHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC--HHH-----HHHHH-HH-HHh-CCCEEcCC-CCC
Confidence 999999999999999875 3589999999999999964 221 22322 23 332 34566655 457
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH-----------
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY----------- 259 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~----------- 259 (311)
+..+.||.+++.||++|++ ..+|+||+++|||||++|++.+++..++++|||||++.+++....
T Consensus 151 ~~~~~g~~t~a~Ei~~q~~-----~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~ 225 (338)
T PRK06608 151 DSTIAGAGTLCYEALQQLG-----FSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLN 225 (338)
T ss_pred HHHhccHHHHHHHHHHhcC-----CCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCC
Confidence 7778899999999999985 369999999999999999999999999999999999998864321
Q ss_pred HHHHHhHhhhCCC----------CCCCCeEEeccCCccchHHHHHH
Q 021545 260 DYTQGLLDGLNAG----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 260 ~~i~~~~~g~~~~----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
.....+.++++.+ ...|+++.|+|.+.+..+..+..
T Consensus 226 ~~~~t~~~gl~~~~~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~ 271 (338)
T PRK06608 226 YSPNTIADGLKTLSVSARTFEYLKKLDDFYLVEEYEIYYWTAWLTH 271 (338)
T ss_pred CCCCCeecccCCCCCCHHHHHHHHhCCCEEEECHHHHHHHHHHHHH
Confidence 1113455566541 13689999999999988776654
No 41
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.2e-35 Score=286.88 Aligned_cols=234 Identities=17% Similarity=0.172 Sum_probs=179.9
Q ss_pred cccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~ 110 (311)
.++.....+|||++ ++.|++ |+|+|++++ +||+|+|.+.+++..+. +.+.++||++ |+||||+|+|+
T Consensus 17 ~~i~~~i~~TPl~~--~~~ls~~~g~~l~~K~E~~~p--tGSfK~RgA~~~i~~l~~~~~~~~Vv~a--SsGN~g~alA~ 90 (420)
T PRK08639 17 KRLKDVVPETPLQR--NDYLSEKYGANVYLKREDLQP--VRSYKLRGAYNAISQLSDEELAAGVVCA--SAGNHAQGVAY 90 (420)
T ss_pred HHHhCcCcCCCccc--hHHHHHHhCCEEEEEecCCCC--CCCcHHHHHHHHHHhCCHHhhCCEEEEE--CccHHHHHHHH
Confidence 36777889999999 666653 789999997 79999999999988743 2335678864 57999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc--CccccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS--KEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~--~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
+|+++|++|++|||+.+| ..|+..+|.|||+|+.+. .+.|++ ..+. +++++++.+..|+.| +
T Consensus 91 ~a~~~G~~~~IvmP~~~~--------~~k~~~~r~~GA~vv~v~~~g~~~~~-----a~~~-a~~~a~~~g~~~~~~--~ 154 (420)
T PRK08639 91 ACRHLGIPGVIFMPVTTP--------QQKIDQVRFFGGEFVEIVLVGDTFDD-----SAAA-AQEYAEETGATFIPP--F 154 (420)
T ss_pred HHHHcCCCEEEEECCCCh--------HHHHHHHHHcCCCeeEEEEeCcCHHH-----HHHH-HHHHHHhcCCcccCC--C
Confidence 999999999999999875 357999999999754332 223543 3333 334444332334444 4
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH---------
Q 021545 189 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY--------- 259 (311)
Q Consensus 189 ~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~--------- 259 (311)
.|+....||.+++.||++|++.. ..+|+||+|+||||+++|++.++|..+|++|||||++++++.+..
T Consensus 155 ~~~~~~~G~~tig~EI~eq~~~~---~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~ 231 (420)
T PRK08639 155 DDPDVIAGQGTVAVEILEQLEKE---GSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVT 231 (420)
T ss_pred CChhHhcchhHHHHHHHHhcccc---CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCcee
Confidence 57888889999999999998620 029999999999999999999999999999999999999876431
Q ss_pred -HHHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 260 -DYTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 260 -~~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+.+.++++|+++. ...|+++.|+|.+++..+..++.+
T Consensus 232 ~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~ 280 (420)
T PRK08639 232 LEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNK 280 (420)
T ss_pred CCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 1334566777652 237999999999999998887653
No 42
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=3.1e-34 Score=273.41 Aligned_cols=226 Identities=16% Similarity=0.145 Sum_probs=182.9
Q ss_pred cccccCCCCCCccccCCCCCCCCCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCC-EEEEeCCccchHHHHHHHHHHHcC
Q 021545 38 HVFSLGHFPTPIHKWNLPNLPHNTERDDLSGMQLSGNKVRKLEFLMADAVAQGAD-CIITIGGIQSNHCRAAAVAAKYLN 116 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls~~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~-~vVt~g~s~GNhg~AlA~~a~~~G 116 (311)
.++...+.+|||++ ++.|.-|+|.|++|+ +||||+|++.+++..+.+.+.. .||+ +|+||||+|+|++|+.+|
T Consensus 31 ~~i~~~i~~TPL~~--~~~l~v~lK~E~~np--tGSfK~RgA~~~l~~a~~~~~~~~VV~--aSsGN~G~alA~aa~~~G 104 (349)
T PRK08813 31 ARLRRYLSPTPLHY--AERFGVWLKLENLQR--TGSYKVRGALNALLAGLERGDERPVIC--ASAGNHAQGVAWSAYRLG 104 (349)
T ss_pred HHHhCcCCCCCeEE--CCCCcEEEEecCCCC--cCCCHHHHHHHHHHHHHHcCCCCeEEE--ECCCHHHHHHHHHHHHcC
Confidence 46788889999999 666655999999997 7999999999999999988864 6775 477999999999999999
Q ss_pred CcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHH
Q 021545 117 LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWG 196 (311)
Q Consensus 117 l~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~G 196 (311)
++|+||||...+ ..|+..++.|||+|+.++. .|++ . .+.+++++++. ..|+++ ++.|+..+.|
T Consensus 105 i~~~IvvP~~~~--------~~K~~~i~~~GAeVv~~g~-~~~~-----a-~~~a~~la~~~-g~~~v~-~~~np~~i~G 167 (349)
T PRK08813 105 VQAITVMPHGAP--------QTKIAGVAHWGATVRQHGN-SYDE-----A-YAFARELADQN-GYRFLS-AFDDPDVIAG 167 (349)
T ss_pred CCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----H-HHHHHHHHHhc-CCEEcC-ccCChHHHHH
Confidence 999999999875 3689999999999999976 4654 2 23345565543 345554 4568999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH---------HHHHhHh
Q 021545 197 YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD---------YTQGLLD 267 (311)
Q Consensus 197 y~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~---------~i~~~~~ 267 (311)
|.|++.||++| .||+||+|+|+||+++|++.++|+ +.+|||||++++.+.+... ...++++
T Consensus 168 ~~Tig~EI~e~--------~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiad 237 (349)
T PRK08813 168 QGTVGIELAAH--------APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLAD 237 (349)
T ss_pred HHHHHHHHHcC--------CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceec
Confidence 99999999876 289999999999999999999996 5799999999997654221 1235667
Q ss_pred hhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 268 GLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 268 g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+++.. ...|+++.|+|.+++..+..+..+
T Consensus 238 gl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~ 277 (349)
T PRK08813 238 GVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALE 277 (349)
T ss_pred ccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 76642 237999999999999998887754
No 43
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=2.7e-34 Score=275.20 Aligned_cols=229 Identities=20% Similarity=0.234 Sum_probs=177.2
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a 112 (311)
++.+.+++|||++ +++|+. |+|+|++|+ +||||+|++.+++.+|.++|.++||++ |+||||+|+|++|
T Consensus 21 ~~~l~~G~TPl~~--l~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~alA~~a 94 (352)
T PRK06721 21 DVSLMEGNTPLIP--LLNISKQLGIQLYGKYEGANP--TGSFKDRGMVMAVAKAKEEGSEAIICA--STGNTSASAAAYA 94 (352)
T ss_pred ccccCcCCCCeeE--chhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 5788899999999 666653 789999987 799999999999999999999999975 6899999999999
Q ss_pred HHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchh
Q 021545 113 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 192 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~ 192 (311)
+.+|++|++|||+.... ..|+++++.+||+|+.++. .|++ ..+ .++++.++.+ .+++ +..|+.
T Consensus 95 a~~G~~~~vvvp~~~~~-------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~-~a~~~~~~~~-~~~~--~~~n~~ 157 (352)
T PRK06721 95 ARLGMKCIIVIPEGKIA-------HGKLAQAVAYGAEIISIEG-NFDD-----ALK-AVRNIAAEEP-ITLV--NSVNPY 157 (352)
T ss_pred HHCCCcEEEEECCCCCC-------HHHHHHHHHcCCEEEEECC-CHHH-----HHH-HHHHHHHhCC-ceec--cCCCch
Confidence 99999999999986421 3589999999999999986 3543 222 3344444322 3444 345888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHH----HhhCC-CCCeEEEEeccCCchhhHHH----HH
Q 021545 193 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLG----SWLGT-LKAKVHAFSVCDDPDYFYDY----TQ 263 (311)
Q Consensus 193 ~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~----~~~~~-~~~rVigV~~~g~~~~~~~~----i~ 263 (311)
+..||.+++.||++|+. ..+|+||+|+||||+++|++.+ +|..+ +++|||||++++++.....+ ..
T Consensus 158 ~~~G~~t~~~Ei~eq~~-----~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~ 232 (352)
T PRK06721 158 RIEGQKTAAFEICDQLQ-----RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPE 232 (352)
T ss_pred hhhhhhhHHHHHHHHhC-----CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCC
Confidence 99999999999999985 3599999999999999985544 45454 89999999999976543221 12
Q ss_pred HhHhhhCCC-------------CCCCCeEEeccCCccchHHHHHH
Q 021545 264 GLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 264 ~~~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
++.++++.+ ...|+++.|+|.+.+..+..+..
T Consensus 233 tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~ 277 (352)
T PRK06721 233 TIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAK 277 (352)
T ss_pred ceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHH
Confidence 233333321 13578999999999888877654
No 44
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.3e-34 Score=277.43 Aligned_cols=228 Identities=21% Similarity=0.258 Sum_probs=177.4
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a 112 (311)
++++.+++|||++ +++|+. |+|+|++|+ +||||+|++.+++.+|+++|.++||++ |+||||+|+|++|
T Consensus 21 ~~~l~~G~TPL~~--~~~l~~~~g~~l~~K~E~~np--tGS~KdR~a~~~i~~a~~~g~~~vV~a--SsGN~G~AlA~~a 94 (351)
T PRK06352 21 MISLAEGNTPLIP--LPNLSKELGVTLYGKYEGLNP--TGSFKDRGMVMAVAKAKEEGAEAVICA--STGNTSAAAAAYA 94 (351)
T ss_pred ccccCCCCCCeeE--cHhhHHHhCCeEEEEecCCCC--ccChHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 6889999999999 666653 789999987 799999999999999999999999975 6899999999999
Q ss_pred HHcCCcEEEEEcCCC-cccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 113 KYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~-~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
+.+|++|++|||+.. + ..|+.++++|||+|+.++.. |++ . .+.++++.++. ..+++ +..|+
T Consensus 95 a~~G~~~~ivvp~~~~~--------~~k~~~~~a~GA~V~~~~~~-~~~-----~-~~~a~~~~~~~-~~~~~--~~~n~ 156 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVA--------LGKLAQAVMYGADIISIQGN-FDE-----A-LKSVRELAETE-AVTLV--NSVNP 156 (351)
T ss_pred HHcCCcEEEEEeCCCCc--------HHHHHHHHhcCCEEEEECCC-HHH-----H-HHHHHHHHHhc-Ccccc--cCCCc
Confidence 999999999999863 3 35899999999999999863 543 2 22334455432 22333 34589
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCC-----CeEEEEeccCCchhhHHH----H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-----AKVHAFSVCDDPDYFYDY----T 262 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~-----~rVigV~~~g~~~~~~~~----i 262 (311)
.++.||.+++.||++|++ ..||+||+|+|+|||++|++.+++++.++ +|||||++++++.....+ .
T Consensus 157 ~~~~G~~t~~~EI~~Q~~-----~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~ 231 (351)
T PRK06352 157 YRLEGQKTAAFEICEQLG-----SAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNP 231 (351)
T ss_pred cceeeHHHHHHHHHHHcC-----CCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCC
Confidence 999999999999999985 46999999999999999999999987766 899999999986432211 1
Q ss_pred HHhHhhhCCC--C-------CCC----CeEEeccCCccchHHHHHH
Q 021545 263 QGLLDGLNAG--V-------DSR----DIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 263 ~~~~~g~~~~--~-------~~~----dvv~v~e~~~~~~~~~~~~ 295 (311)
..+.++++.+ . ..| +++.|+|.+.+..+..+..
T Consensus 232 ~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~ 277 (351)
T PRK06352 232 ETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAA 277 (351)
T ss_pred CcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 1222332221 0 022 3899999988888776654
No 45
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=7.6e-34 Score=275.37 Aligned_cols=235 Identities=17% Similarity=0.148 Sum_probs=177.6
Q ss_pred cccCCCCCCccccCCCCCC-------------C-CCCCCCCCCCCCCchhHHhHHHHHHH-----HHHcCC---------
Q 021545 40 FSLGHFPTPIHKWNLPNLP-------------H-NTERDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA--------- 91 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls-------------~-~vKRedl~~~~~ggnK~Rkl~~ll~~-----a~~~G~--------- 91 (311)
-.+++++|||++ ++.|+ + |+|.|.+|+. +||||+|++.+++.. +++.|.
T Consensus 46 ~~~~~~~TPLv~--~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~-tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~ 122 (404)
T cd06447 46 ASHGIIESPLLP--IPRMKQALEKLYHQPIKGRLLLKADSHLPI-SGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSK 122 (404)
T ss_pred ccCCccCCCcee--hHHHHHHhccccccCcCceEEEEecCCCCC-CCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhh
Confidence 345589999999 55432 2 7889998873 599999999998864 555554
Q ss_pred ------------CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCcccc
Q 021545 92 ------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYS 159 (311)
Q Consensus 92 ------------~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~ 159 (311)
++||+ +|+||||+++|++|+.+|++|+||||...+ ..|+..+++|||+|+.++. .|+
T Consensus 123 ~~~~~~~~~~~~~~VV~--aSsGN~G~alA~~a~~~G~~~~IvvP~~~~--------~~K~~~ira~GAeVv~v~~-~~~ 191 (404)
T cd06447 123 LASEKFRKLFSQYSIAV--GSTGNLGLSIGIMAAALGFKVTVHMSADAK--------QWKKDKLRSKGVTVVEYET-DYS 191 (404)
T ss_pred hhhhhhhhcccCCEEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCc--------HHHHHHHHHCCCEEEEECC-CHH
Confidence 36776 478999999999999999999999999885 3689999999999999986 354
Q ss_pred ccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCC---CCCCCeEEEeCCcchhHHHHHHH
Q 021545 160 KIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG---GVKFDDIVVACGSGGTIAGLSLG 236 (311)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~---~~~~D~ivv~vGtGGt~aGl~~~ 236 (311)
+ ..+ .++++.++.+..|+++. +.++..+.||.|++.||++|++.... ...||+||+|+|+||+++|++.+
T Consensus 192 ~-----a~~-~a~~la~~~~~~~~v~~-~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~ 264 (404)
T cd06447 192 K-----AVE-EGRKQAAADPMCYFVDD-ENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFG 264 (404)
T ss_pred H-----HHH-HHHHHHHHCCCeEeCCC-CCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHH
Confidence 3 223 34455554334455544 44566788999999999999962100 01256899999999999999999
Q ss_pred HhhC-CCCCeEEEEeccCCchhhHH----------------HHHHhHhhhCCC-----------CCCCCeEEeccCCccc
Q 021545 237 SWLG-TLKAKVHAFSVCDDPDYFYD----------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYM 288 (311)
Q Consensus 237 ~~~~-~~~~rVigV~~~g~~~~~~~----------------~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~ 288 (311)
+|+. .++++||+|++.+++.+... ...++++|++.. ...|+++.|+|.+++.
T Consensus 265 lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~ 344 (404)
T cd06447 265 LKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYR 344 (404)
T ss_pred HHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHH
Confidence 9986 78999999999998754211 023466666652 3379999999999998
Q ss_pred hHHHHHH
Q 021545 289 TFKNILM 295 (311)
Q Consensus 289 ~~~~~~~ 295 (311)
.+..+..
T Consensus 345 a~r~La~ 351 (404)
T cd06447 345 LLAMLKD 351 (404)
T ss_pred HHHHHHH
Confidence 8877664
No 46
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=271.46 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=178.7
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHc-CCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQ-GADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~-G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++....++|||++ ++.|++ |+|+|++++ +||+|+|.+.+++..+.+. +.++||+ +|+||||+|+|++
T Consensus 13 ~~~~~i~~TPLv~--~~~l~~~~g~~i~~K~E~~np--tgS~KdR~a~~~~~~l~~~~~~~~vv~--aSsGN~g~alA~~ 86 (317)
T PRK06815 13 RLRPQVRVTPLEH--SPLLSQHTGCEVYLKCEHLQH--TGSFKFRGASNKLRLLNEAQRQQGVIT--ASSGNHGQGVALA 86 (317)
T ss_pred HhhCCCCCCCccc--cHhHHHhhCCeEEEEecCCCC--CCCcHHHHHHHHHHhcchhhcCceEEE--ECCChHHHHHHHH
Confidence 4556679999999 666653 789999997 7999999999988865332 3456886 4789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|++|||+..+ ..|+.+++.+||+|+.++.+ |++ . ...+++++++.+..|+.|+ .|+
T Consensus 87 a~~~G~~~~i~~p~~~~--------~~k~~~~~~~GA~V~~~~~~-~~~-----~-~~~a~~~~~~~~~~~~~~~--~~~ 149 (317)
T PRK06815 87 AKLAGIPVTVYAPEQAS--------AIKLDAIRALGAEVRLYGGD-ALN-----A-ELAARRAAEQQGKVYISPY--NDP 149 (317)
T ss_pred HHHhCCCEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHH-----H-HHHHHHHHHhcCCEEecCC--CCh
Confidence 99999999999998874 35899999999999999864 543 2 2334455554434454444 467
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----H------
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----Y------ 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----~------ 261 (311)
..+.||.+++.||++|++ .+|+||+|+||||+++|++.++++.++++|||||++.+++.+... +
T Consensus 150 ~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~ 223 (317)
T PRK06815 150 QVIAGQGTIGMELVEQQP------DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAE 223 (317)
T ss_pred hhhcchhHHHHHHHHhcC------CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCC
Confidence 777899999999999985 489999999999999999999999999999999999998765432 1
Q ss_pred HHHhHhhhCCC------------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...++++++.. ...|+++.|+|.+++.++..+..
T Consensus 224 ~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~ 269 (317)
T PRK06815 224 QPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAE 269 (317)
T ss_pred CCChhhhhccCCcccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 12255555321 23689999999999988877765
No 47
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=3.3e-34 Score=279.28 Aligned_cols=229 Identities=15% Similarity=0.115 Sum_probs=182.6
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHH-cCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~-~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++...+++|||++ ++.|+. |+|+|++|+ +||+|+|.+.+++..+.+ .+.++||++ |+||||+|+|++
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~g~~l~~K~E~~np--tGS~KdR~a~~~i~~~~~~~~~~~vv~a--SsGN~g~alA~~ 89 (403)
T PRK07334 16 RLAGQVLRTPCVH--SRTLSQITGAEVWLKFENLQF--TASFKERGALNKLLLLTEEERARGVIAM--SAGNHAQGVAYH 89 (403)
T ss_pred HHhCCCCCCCccc--hHHHHHhhCCeEEEEeccCCC--CCCchHHHHHHHHHhcCHHHhCCcEEEE--CCcHHHHHHHHH
Confidence 5666789999999 666653 789999987 799999999999887653 334668864 679999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|++|||...+ ..|+.+++.|||+|+.++. .|++ . .+.+++++++. ..|+ +.++.|+
T Consensus 90 a~~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~v~~~~~-~~~~-----~-~~~a~~l~~~~-~~~~-~~~~~~~ 152 (403)
T PRK07334 90 AQRLGIPATIVMPRFTP--------TVKVERTRGFGAEVVLHGE-TLDE-----A-RAHARELAEEE-GLTF-VHPYDDP 152 (403)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEECc-CHHH-----H-HHHHHHHHHhc-CCEe-cCCCCCH
Confidence 99999999999999875 3689999999999999875 3543 2 22445566544 3344 3445688
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHH--------HH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY--------TQ 263 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~--------i~ 263 (311)
....||.+++.||++|++ .+|+||+|+|||||++|++.++++.++++|||||++++++.+.... ..
T Consensus 153 ~~~~g~~t~~~Ei~~q~~------~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~ 226 (403)
T PRK07334 153 AVIAGQGTVALEMLEDAP------DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGS 226 (403)
T ss_pred HHHHhHHHHHHHHHhcCC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCC
Confidence 889999999999999984 4899999999999999999999999999999999999987654321 12
Q ss_pred HhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 264 GLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 264 ~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
+++++++.. ...|+++.|+|.+.+..+..+..+
T Consensus 227 ~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~ 270 (403)
T PRK07334 227 TIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQAVSLLLEI 270 (403)
T ss_pred CccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHh
Confidence 356666641 337999999999999998887654
No 48
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.8e-34 Score=279.38 Aligned_cols=231 Identities=16% Similarity=0.115 Sum_probs=180.1
Q ss_pred ccccCCCCCCccccCCCCCC------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLP------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++++.+++|||++ +++|+ + |+|+|++|+ +||||+|++.+++..|.+.|.++||+ +|+||||+|+|++
T Consensus 82 ~v~l~eG~TPLv~--~~~l~~~lG~~~l~~K~E~~nP--tGSfKdRga~~~v~~A~~~g~~~vv~--aSsGN~g~alA~~ 155 (421)
T PRK07591 82 PVDLGPGFTPLVK--ADRLARELGLKNLYIKDDSVNP--THSFKDRVVSVALTAARELGFTTVAC--ASTGNLANSVAAH 155 (421)
T ss_pred CCcCCCCCCcceE--hHHHHHHhCCCcEEEEeCCCCC--ccChHHHHHHHHHHHHHHcCCCEEEE--eCCCHHHHHHHHH
Confidence 5889999999999 66653 2 789999986 79999999999999999999999885 4789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+++|++|+||||+..+ .+|+.++++|||+|+.++.+ |++ . .++++++.++.+..|++. ...||
T Consensus 156 aa~~Gl~~~I~vP~~~~--------~~k~~~~~~~GA~Vi~v~g~-~d~-----a-~~~a~~~~~~~~~~~~~n-~~~~p 219 (421)
T PRK07591 156 AARAGLDSCVFIPADLE--------AGKIVGTLVYGPTLVAVDGN-YDD-----V-NRLCSELANEHEGWGFVN-INLRP 219 (421)
T ss_pred HHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCC-HHH-----H-HHHHHHHHHhcCCEEEec-CCCCc
Confidence 99999999999999764 36899999999999999863 653 2 233444444332345443 34578
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC-------CCCCeEEEEeccCCchhhHH----
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYD---- 260 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~-------~~~~rVigV~~~g~~~~~~~---- 260 (311)
..+.|+.+++.||++|++. ..||+||+|+|+||+++|++.+|+++ ++.+|||+|++++.......
T Consensus 220 ~~ieG~~Tia~Ei~eQl~~----~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g 295 (421)
T PRK07591 220 YYAEGSKTLGYEVAEQLGW----RLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEG 295 (421)
T ss_pred ccccchHHHHHHHHHHcCC----CCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcC
Confidence 8889999999999999852 24999999999999999999999986 57899999999985443321
Q ss_pred -------HHHHhHhhhCCCCC-------------CCCeEEeccCCccchHHHHHH
Q 021545 261 -------YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 261 -------~i~~~~~g~~~~~~-------------~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..+.+.+++..+.. ..+++.|+|.++...+..+..
T Consensus 296 ~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~ 350 (421)
T PRK07591 296 RDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLAR 350 (421)
T ss_pred CCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh
Confidence 12334444433211 236899999988887776654
No 49
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=5.1e-34 Score=277.19 Aligned_cols=231 Identities=16% Similarity=0.083 Sum_probs=178.5
Q ss_pred cccccCCCCCCccccCCCCCC------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHH
Q 021545 38 HVFSLGHFPTPIHKWNLPNLP------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 38 ~~~~~~~~~TPL~~~~~~~Ls------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~ 110 (311)
..+++++++|||++ +++|+ + |+|+|++|+ +||||+|++.+++.+|++.|.++||+ +|+||||+|+|+
T Consensus 71 ~~vslgeG~TPL~~--~~~l~~~~G~~~l~~K~E~~nP--tGSfKdRga~~~i~~a~~~g~~~vv~--aSsGN~g~alA~ 144 (394)
T PRK08197 71 HIVSLGEGMTPLLP--LPRLGKALGIGRLWVKDEGLNP--TGSFKARGLAVGVSRAKELGVKHLAM--PTNGNAGAAWAA 144 (394)
T ss_pred CCCccCcCCCCceE--hHHHHHHhCCCcEEEEeCCCCC--CcCcHHhHHHHHHHHHHHcCCCEEEE--eCCcHHHHHHHH
Confidence 35899999999999 55543 2 789999987 79999999999999999999999986 468999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
+|+.+|++|++|||+..+ ..|+.+++++||+|+.++. .|++ ..+ +++++.++. ..| ...++.|
T Consensus 145 ~aa~~G~~~~v~vp~~~~--------~~k~~~~~~~GA~Vi~v~~-~~~~-----~~~-~a~~~~~~~-g~~-~~~~~~n 207 (394)
T PRK08197 145 YAARAGIRATIFMPADAP--------EITRLECALAGAELYLVDG-LISD-----AGK-IVAEAVAEY-GWF-DVSTLKE 207 (394)
T ss_pred HHHHcCCcEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----HHH-HHHHHHHhc-Ccc-cccCCCC
Confidence 999999999999999875 3689999999999999986 3543 222 233333332 234 4455678
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC-------CCCCeEEEEeccCCchhhHH---
Q 021545 191 SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFYD--- 260 (311)
Q Consensus 191 ~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~-------~~~~rVigV~~~g~~~~~~~--- 260 (311)
|..+.||.+++.||++|++. ..||+||+|+|+||+++|++.+|+++ ++.+|||+|+++++......
T Consensus 208 p~~ieG~~t~a~Ei~eQl~~----~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~ 283 (394)
T PRK08197 208 PYRIEGKKTMGLELAEQLGW----RLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEE 283 (394)
T ss_pred ccchhcHHHHHHHHHHHcCC----CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHc
Confidence 99999999999999999862 34999999999999999999999986 48899999999998654321
Q ss_pred ---------HHHHhHhhhCCCCC-------------CCCeEEeccCCccchHHHHHH
Q 021545 261 ---------YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 261 ---------~i~~~~~g~~~~~~-------------~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...++.+++..+.. ..+++.|+|.++...+..+..
T Consensus 284 g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~ 340 (394)
T PRK08197 284 GKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAR 340 (394)
T ss_pred CCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHh
Confidence 01223334433211 234688888888877766543
No 50
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.1e-34 Score=272.00 Aligned_cols=229 Identities=16% Similarity=0.155 Sum_probs=178.2
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHH-cCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVA-QGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~-~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++....++|||++ +++|++ |+|+|++|+ +||+|+|.+.+++.++.+ .+.++||+. |+||||+|+|++
T Consensus 20 ~i~~~i~~TPlv~--~~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~i~~~~~~~~~~~vv~~--SsGN~g~alA~~ 93 (333)
T PRK08638 20 RLAGRIRKTPLPR--SNYLSERCKGEIFLKLENMQR--TGSFKIRGAFNKLSSLTDAEKRKGVVAC--SAGNHAQGVALS 93 (333)
T ss_pred HhhCcCcCCCcee--chhhHHhhCCeEEEEeccCCc--cCCcHHHHHHHHHHhccHHhcCCeEEEe--CCcHHHHHHHHH
Confidence 6667789999999 666653 789999987 799999999999988654 456778864 569999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|+||||+..+ ..|+.+++.+||+|+.++. .|++ .++. ++++.++.+ .|++ .++.|+
T Consensus 94 aa~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~~-a~~~a~~~g-~~~~-~~~~~~ 156 (333)
T PRK08638 94 CALLGIDGKVVMPKGAP--------KSKVAATCGYGAEVVLHGD-NFND-----TIAK-VEEIVEEEG-RTFI-PPYDDP 156 (333)
T ss_pred HHHcCCCEEEEeCCCCc--------HHHHHHHHHcCCEEEEECc-CHHH-----HHHH-HHHHHHhcC-CEEc-CcCCCc
Confidence 99999999999999875 3589999999999999975 3543 2232 334444332 3443 345688
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
....||.+++.||++|+. .+|+||+|+|+|||++|++.++|+.++++||||||+.+++.+... .
T Consensus 157 ~~~~g~~t~a~Ei~~q~~------~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~ 230 (333)
T PRK08638 157 KVIAGQGTIGLEILEDLW------DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRT 230 (333)
T ss_pred chhccccHHHHHHHhhcC------CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCC
Confidence 889999999999999984 489999999999999999999999999999999999987542211 1
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
...+.++++.. ...|+++.|+|.+.+..+..+..+
T Consensus 231 ~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~ 276 (333)
T PRK08638 231 TGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQR 276 (333)
T ss_pred CCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHH
Confidence 11233343321 247899999999999888877653
No 51
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=5e-34 Score=273.48 Aligned_cols=228 Identities=18% Similarity=0.218 Sum_probs=176.7
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a 112 (311)
++.+++++|||++ ++.|+. |+|+|++++ +||||+|++.+++..++++|.++||++ |+||||+|+|++|
T Consensus 24 ~~~l~~g~TPl~~--~~~l~~~~g~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~iv~a--SsGN~g~alA~~a 97 (353)
T PRK07409 24 VVTLGEGNTPLIP--APNLSELLGVEVYVKYEGLNP--TGSFKDRGMTMAVTKAKEEGAKAVICA--STGNTSASAAAYA 97 (353)
T ss_pred cccCCCCCCCEEE--chhhHHHhCCeEEEEecCCCC--ccchHHHHHHHHHHHHHHCCCCEEEEE--CCcHHHHHHHHHH
Confidence 5889999999999 666543 789999987 799999999999999999999999864 7899999999999
Q ss_pred HHcCCcEEEEEcCCC-cccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 113 KYLNLDCYLILRTSK-VLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~-~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
+.+|++|++|||+.. + ..|++.++.+||+|+.++. .|++ + .+.++++.++.+ .++++ ..|+
T Consensus 98 ~~~G~~~~ivvP~~~~~--------~~k~~~~~~~GA~Vi~~~~-~~~~-----~-~~~a~~l~~~~~-~~~~~--~~n~ 159 (353)
T PRK07409 98 ARAGLKAFVLIPEGKIA--------LGKLAQAVMYGAEIIQIDG-NFDD-----A-LEIVRELAEKYP-VTLVN--SVNP 159 (353)
T ss_pred HHcCCCEEEEEcCCCCc--------hhhHHHHHhcCCEEEEECC-CHHH-----H-HHHHHHHHHhcC-ceecC--CCCc
Confidence 999999999999873 3 3579999999999999986 3543 2 223444554432 34443 3589
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCC------CCeEEEEeccCCchhhHH----H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFYD----Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~------~~rVigV~~~g~~~~~~~----~ 261 (311)
.++.||.+++.||++|+. ..+|+||+|+||||+++|++.+++...+ .+|||||+++++..+... .
T Consensus 160 ~~~~g~~t~~~EI~~q~~-----~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~ 234 (353)
T PRK07409 160 YRIEGQKTAAFEIVDALG-----DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKN 234 (353)
T ss_pred hhhhhHHHHHHHHHHHhC-----CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCC
Confidence 999999999999999985 3699999999999999999999987532 589999999987644311 1
Q ss_pred HHHhHhhhCCC-------------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..++.++++.+ ...++++.|+|.+.+..+..+..
T Consensus 235 ~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~ 281 (353)
T PRK07409 235 PETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLAR 281 (353)
T ss_pred CcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHH
Confidence 12233443321 11246888998888777766553
No 52
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.7e-33 Score=268.11 Aligned_cols=234 Identities=15% Similarity=0.068 Sum_probs=179.2
Q ss_pred CchhhhcCCCCccccccCCCCCCccccCCCCCCCCCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHH
Q 021545 26 PSWASHLAPIPSHVFSLGHFPTPIHKWNLPNLPHNTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHC 105 (311)
Q Consensus 26 p~w~~~l~~~p~~~~~~~~~~TPL~~~~~~~Ls~~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg 105 (311)
..|. ++-.++...+.+++++|||.+ ..++ |+|.|.+|+ +||||||.+.+++..|.++|.++||+. |+||||
T Consensus 39 ~~~~-~~lp~~~~~vslgeG~TPLv~--~~~l--~~K~E~~nP--TGSfKDRga~~~i~~a~~~g~~~vv~a--SsGN~g 109 (338)
T PRK06450 39 NLER-KNFPYIKHFISLGEGRTPLIK--KGNI--WFKLDFLNP--TGSYKDRGSVTLISYLAEKGIKQISED--SSGNAG 109 (338)
T ss_pred hhhH-hhCCCCcCCCCCCCCCCCcee--cCCE--EEEecCCCC--cCCCHHHHHHHHHHHHHHcCCCEEEEE--CCcHHH
Confidence 4563 333333335899999999999 5544 899999997 899999999999999999999988864 779999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEec
Q 021545 106 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIP 185 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip 185 (311)
+|+|++|+.+|++|+||||+..+ ..|+.+++.|||+|+.++. .|++ . .++ +++. ..|++
T Consensus 110 ~slA~~aa~~G~~~~i~vP~~~~--------~~k~~~i~~~GA~vi~v~~-~~~~-----~-~~~----a~~~-g~~~~- 168 (338)
T PRK06450 110 ASIAAYGAAAGIEVKIFVPETAS--------GGKLKQIESYGAEVVRVRG-SRED-----V-AKA----AENS-GYYYA- 168 (338)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECC-CHHH-----H-HHH----HHhc-CeEec-
Confidence 99999999999999999999875 3689999999999999986 3542 1 111 2221 22333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCC------CCeEEEEeccCCchhhH
Q 021545 186 VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFY 259 (311)
Q Consensus 186 ~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~------~~rVigV~~~g~~~~~~ 259 (311)
.+..||...+||.|++.||++|++. ..||+||+|+|+||+++|++.+|+++.+ .+|||+||+++......
T Consensus 169 ~~~~np~~ieG~kTia~EI~eql~~----~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~ 244 (338)
T PRK06450 169 SHVLQPQFRDGIRTLAYEIAKDLDW----KIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCA 244 (338)
T ss_pred cCCCCccHHHHHHHHHHHHHHHcCC----CCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHH
Confidence 3446899999999999999999851 3599999999999999999999998643 47999999999654332
Q ss_pred H----------HHHHhHhhhCCCC------------CCCCeEEeccCCccchHHHH
Q 021545 260 D----------YTQGLLDGLNAGV------------DSRDIVNIQNVSVYMTFKNI 293 (311)
Q Consensus 260 ~----------~i~~~~~g~~~~~------------~~~dvv~v~e~~~~~~~~~~ 293 (311)
. ...++.+++.... ..+++|.|+|.++...+..+
T Consensus 245 a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~g~~v~V~d~ei~~a~~~L 300 (338)
T PRK06450 245 KFKGISYTPPDKVTSIADALVSTRPFLLDYMVKALSEYGECIVVSDNEIVEAWKEL 300 (338)
T ss_pred HhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHHHHhcCcEEEECHHHHHHHHHHH
Confidence 1 1122333333210 12489999999999888765
No 53
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=4.4e-34 Score=267.84 Aligned_cols=228 Identities=18% Similarity=0.181 Sum_probs=178.5
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC-CCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G-~~~vVt~g~s~GNhg~AlA~~ 111 (311)
.+...+++|||++ +++|+. |+|+|++++ +||+|+|.+.+++.++++.| .++||++ |+||||+|+|++
T Consensus 10 ~i~~~ig~TPl~~--~~~l~~~~g~~i~~K~E~~np--tgS~Kdr~a~~~l~~~~~~~~~~~iv~~--ssGN~g~alA~~ 83 (304)
T cd01562 10 RIKPVVRRTPLLT--SPTLSELLGAEVYLKCENLQK--TGSFKIRGAYNKLLSLSEEERAKGVVAA--SAGNHAQGVAYA 83 (304)
T ss_pred HHhCcCCCCCccc--chhhHHHhCCeEEEEeccCCC--cCCcHHHhHHHHHHhcCHhhcCCcEEEE--CCCHHHHHHHHH
Confidence 3455679999999 677653 789999997 69999999999999988776 5678875 569999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|++|+|...+ ..|+.+++.+||+|+.++.+ |++ . ...+++++++.+ .|+ +.++.|+
T Consensus 84 a~~~G~~~~ivvp~~~~--------~~k~~~l~~~Ga~vi~~~~~-~~~-----~-~~~a~~la~~~~-~~~-~~~~~n~ 146 (304)
T cd01562 84 AKLLGIPATIVMPETAP--------AAKVDATRAYGAEVVLYGED-FDE-----A-EAKARELAEEEG-LTF-IHPFDDP 146 (304)
T ss_pred HHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCCC-HHH-----H-HHHHHHHHHhcC-CEE-eCCCCCc
Confidence 99999999999998874 35899999999999999874 543 2 233455665543 333 3445577
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH----------H
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD----------Y 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~----------~ 261 (311)
....||.+++.||++|+. .||+||+|+|||||++|++.+++..++.+|||||++.+++.+... .
T Consensus 147 ~~~~g~~~~~~Ei~~q~~------~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~ 220 (304)
T cd01562 147 DVIAGQGTIGLEILEQVP------DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPE 220 (304)
T ss_pred chhccHHHHHHHHHHhcC------CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCC
Confidence 788899999999999985 399999999999999999999999999999999999988754321 0
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...+..+++.. ...++++.|+|.+.+.++..+..
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~ 265 (304)
T cd01562 221 VDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFE 265 (304)
T ss_pred CCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHHHHHH
Confidence 12233344321 23678999999988887766653
No 54
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.4e-33 Score=274.75 Aligned_cols=240 Identities=15% Similarity=0.142 Sum_probs=181.5
Q ss_pred CCccccccCCCCCCccccCCCCCC-------------C-CCCCCCCCCCCCCchhHHhHHHHHHH-----HHHcCC----
Q 021545 35 IPSHVFSLGHFPTPIHKWNLPNLP-------------H-NTERDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA---- 91 (311)
Q Consensus 35 ~p~~~~~~~~~~TPL~~~~~~~Ls-------------~-~vKRedl~~~~~ggnK~Rkl~~ll~~-----a~~~G~---- 91 (311)
+|.++.+++..+|||++ ++.|+ + |+|.|.+++. +||||+|++.+++.. +++.|.
T Consensus 64 ~~~~~~~~~~~~TPL~~--~~~l~~~~g~~~~~~~~~~V~lK~E~~np~-tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~ 140 (441)
T PRK02991 64 FPETAATGGIIESPLVA--IPAMQKALEKEYGQPISGRLLLKKDSHLPI-SGSIKARGGIYEVLKHAEKLALEAGLLTLD 140 (441)
T ss_pred CccccccCCccCCCcee--hHHHHHHhcccccCCcCceEEEEEcCCCCC-cCChHHHHHHHHHHHhhHHHHHHhCCCCcC
Confidence 44445667799999999 55442 2 7899998863 699999999988765 445663
Q ss_pred -----------------CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 92 -----------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 92 -----------------~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
++||+ +|+||||+|+|++|+.+|++|+||||++++ ..|+..++.|||+|+.++
T Consensus 141 ~~~~~l~~~~~~~~~~~~~VV~--aSsGN~G~alA~aA~~~G~~~tIvvP~~a~--------~~K~~~ir~~GAeVi~~~ 210 (441)
T PRK02991 141 DDYSKLASPEFRQFFSQYSIAV--GSTGNLGLSIGIMSAALGFKVTVHMSADAR--------QWKKDKLRSHGVTVVEYE 210 (441)
T ss_pred cchhhhcchhhhhhccCcEEEE--ECCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEEC
Confidence 35776 477999999999999999999999999875 368999999999999998
Q ss_pred CccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCC--CC-CCCCeEEEeCCcchhHH
Q 021545 155 KEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGT--GG-VKFDDIVVACGSGGTIA 231 (311)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~--~~-~~~D~ivv~vGtGGt~a 231 (311)
. .|++ . .+.++++.++.+..|+++. +.++..+.||.|++.||++|++..+ .. ..||+||+|+|+||+++
T Consensus 211 ~-~~~~-----a-~~~A~~la~~~~~~~~~~~-~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGlia 282 (441)
T PRK02991 211 G-DYGV-----A-VEEGRKAAESDPNCYFIDD-ENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPG 282 (441)
T ss_pred C-CHHH-----H-HHHHHHHHHhcCCeEeCCC-CCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHH
Confidence 6 3653 2 2234445544333455443 4567778999999999999996210 00 13679999999999999
Q ss_pred HHHHHHhhC-CCCCeEEEEeccCCchhhHH-------H---------HHHhHhhhCCC-----------CCCCCeEEecc
Q 021545 232 GLSLGSWLG-TLKAKVHAFSVCDDPDYFYD-------Y---------TQGLLDGLNAG-----------VDSRDIVNIQN 283 (311)
Q Consensus 232 Gl~~~~~~~-~~~~rVigV~~~g~~~~~~~-------~---------i~~~~~g~~~~-----------~~~~dvv~v~e 283 (311)
|++.++++. .+++|||+|++.+++.+... . ..+++++++.. ...|++|.|+|
T Consensus 283 Gia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD 362 (441)
T PRK02991 283 GVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSD 362 (441)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECH
Confidence 999999986 68899999999998654321 0 12466676652 23799999999
Q ss_pred CCccchHHHHHH
Q 021545 284 VSVYMTFKNILM 295 (311)
Q Consensus 284 ~~~~~~~~~~~~ 295 (311)
.+++..+..+..
T Consensus 363 ~ei~~a~~~L~~ 374 (441)
T PRK02991 363 ETLYRLLGLLAD 374 (441)
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 55
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2e-33 Score=268.78 Aligned_cols=239 Identities=15% Similarity=0.069 Sum_probs=183.6
Q ss_pred CCchhh-hcCCCCc-cccccCCCCCCccccCCCCCCCCCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccc
Q 021545 25 PPSWAS-HLAPIPS-HVFSLGHFPTPIHKWNLPNLPHNTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQS 102 (311)
Q Consensus 25 ~p~w~~-~l~~~p~-~~~~~~~~~TPL~~~~~~~Ls~~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~G 102 (311)
+..|+= ++-.++. ..+.+.++.|||.+ +. ..-|+|+|++|+ +||||+|++.+++.+|.+.|.++||+. |+|
T Consensus 41 ~~~wry~~~lP~~~~~~~sl~eg~Tpl~~--~~-~~l~~K~E~~nP--tGSfKdRga~~~i~~a~~~g~~~vv~a--SsG 113 (347)
T PRK08329 41 LDMRRYIDYLPVDEEFLPHLTPPITPTVK--RS-IKVYFKLDYLQP--TGSFKDRGTYVTVAKLKEEGINEVVID--SSG 113 (347)
T ss_pred cchhhhHHhCCCCCCCCCcCCCCCCcccc--CC-CeEEEEeCCCCC--CcCCHHHHHHHHHHHHHHcCCCEEEEE--CCC
Confidence 455652 3333332 24688999999998 42 122899999987 799999999999999999999999975 579
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcE
Q 021545 103 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY 182 (311)
Q Consensus 103 Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y 182 (311)
|||+|+|++|+++|++|++|||+..+ ..|+.+++.|||+|+.++.+ |++ . .+.++++.++.+..|
T Consensus 114 N~g~alA~~aa~~G~~~~v~vp~~~~--------~~k~~~~~~~GA~v~~v~~~-~~~-----~-~~~a~~l~~~~~~~~ 178 (347)
T PRK08329 114 NAALSLALYSLSEGIKVHVFVSYNAS--------KEKISLLSRLGAELHFVEGD-RME-----V-HEEAVKFSKRNNIPY 178 (347)
T ss_pred cHHHHHHHHHHHcCCcEEEEECCCCh--------HHHHHHHHHcCCEEEEECCC-HHH-----H-HHHHHHHHHhcCCee
Confidence 99999999999999999999999874 46899999999999999863 542 2 223445555432334
Q ss_pred EecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC------CCCCeEEEEeccCCch
Q 021545 183 VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLKAKVHAFSVCDDPD 256 (311)
Q Consensus 183 ~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~------~~~~rVigV~~~g~~~ 256 (311)
+. ++.|+...+||.+++.||++|++ .||+||+|+|+||+++|++.+++++ .+.+|||+|++.+...
T Consensus 179 ~~--~~~np~~~eG~~t~~~Ei~eql~------~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~ 250 (347)
T PRK08329 179 VS--HWLNPYFLEGTKTIAYEIYEQIG------VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYES 250 (347)
T ss_pred cc--CCCCchhhccchhHHHHHHHHcC------CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCch
Confidence 33 35689999999999999999984 4999999999999999999999985 2568999999998654
Q ss_pred hhHH--HHHHhHhhhCCCCC-------------CCCeEEeccCCccchHHHH
Q 021545 257 YFYD--YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNI 293 (311)
Q Consensus 257 ~~~~--~i~~~~~g~~~~~~-------------~~dvv~v~e~~~~~~~~~~ 293 (311)
.... ...+++++++.+.. .++++.|+|.++...+..+
T Consensus 251 ~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l 302 (347)
T PRK08329 251 LCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWL 302 (347)
T ss_pred HHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHH
Confidence 4321 23345556555321 2457899999988887754
No 56
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=7.8e-33 Score=251.81 Aligned_cols=179 Identities=26% Similarity=0.251 Sum_probs=151.4
Q ss_pred CCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcC---CCEEEEeCCccchHHHHHHHHHHHcCC
Q 021545 47 TPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQG---ADCIITIGGIQSNHCRAAAVAAKYLNL 117 (311)
Q Consensus 47 TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G---~~~vVt~g~s~GNhg~AlA~~a~~~Gl 117 (311)
|||.+ +++|+. |+|+|++++ +||+|+|++.+++..+.++| .++||++ |+||||+|+|++|+.+|+
T Consensus 1 TPl~~--~~~l~~~~~~~l~~K~e~~~p--tgS~K~R~a~~~l~~a~~~g~~~~~~vv~~--ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVR--LKRLSKLGGANIYLKLEFLNP--TGSFKDRGALNLILLAEEEGKLPKGVIIES--TGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeE--ccccccccCCEEEEEecccCC--cCCcHHHHHHHHHHHHHHcCCCCCCEEEEe--CCcHHHHHHHHHHHHcCC
Confidence 78888 566553 789999987 59999999999999999998 5777764 559999999999999999
Q ss_pred cEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHH
Q 021545 118 DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGY 197 (311)
Q Consensus 118 ~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy 197 (311)
+|++|+|...+ ..|+++++.+||+|+.++.. |++ . .+.++++.++.++.|+++. +.|+.++.||
T Consensus 75 ~~~v~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~-----~-~~~a~~~~~~~~~~~~~~~-~~n~~~~~g~ 138 (244)
T cd00640 75 KCTIVMPEGAS--------PEKVAQMRALGAEVVLVPGD-FDD-----A-IALAKELAEEDPGAYYVNQ-FDNPANIAGQ 138 (244)
T ss_pred CEEEEECCCCC--------HHHHHHHHHCCCEEEEECCC-HHH-----H-HHHHHHHHHhCCCCEecCC-CCCHHHHHHH
Confidence 99999999874 36899999999999999874 543 2 2334456655445676654 5899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEec
Q 021545 198 IEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSV 251 (311)
Q Consensus 198 ~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~ 251 (311)
.+++.||.+|++. ..+|+||+|+||||+++|++.+++..++.+|||+|++
T Consensus 139 ~~~~~Ei~~q~~~----~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 139 GTIGLEILEQLGG----QKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HHHHHHHHHHcCC----CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 9999999999862 2599999999999999999999999999999999999
No 57
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.7e-33 Score=272.61 Aligned_cols=241 Identities=16% Similarity=0.158 Sum_probs=182.1
Q ss_pred CCCccccccCCCCCCccccCCCCCC-------------C-CCCCCCCCCCCCCchhHHhHHHHHHH-----HHHcCC---
Q 021545 34 PIPSHVFSLGHFPTPIHKWNLPNLP-------------H-NTERDDLSGMQLSGNKVRKLEFLMAD-----AVAQGA--- 91 (311)
Q Consensus 34 ~~p~~~~~~~~~~TPL~~~~~~~Ls-------------~-~vKRedl~~~~~ggnK~Rkl~~ll~~-----a~~~G~--- 91 (311)
.||..+-.++..+|||++ ++.|+ + |+|.|.+++. +||+|+|++.++|.. |++.|.
T Consensus 58 ~fp~~~~~~~~~~TPL~~--~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~-tGSfKdRGA~~~i~~~~~~~A~~~G~l~~ 134 (431)
T TIGR02035 58 VFPETAATGGIIESPLVE--IFNMQKELEKKYQQEIPGRLLLKMDSHLPI-SGSIKARGGIYEVLKHAEELALEAGLLKL 134 (431)
T ss_pred hCccccccCCccCCCccc--hHHHHHHhhhcccCCcCceEEEEecccCCc-cCCcHHHHHHHHHHHhhHHHHHHcCCCCc
Confidence 367666677999999999 55543 1 6788888763 699999999998864 666665
Q ss_pred ------------------CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 92 ------------------DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 92 ------------------~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
.+||+ +|+||||+++|++|+.+|++|+||||+..+ ..|+..+|.|||+|+.+
T Consensus 135 ~~~~~~l~e~~~~~~~~~~~Vv~--aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~--------~~K~~~ir~~GAeVv~~ 204 (431)
T TIGR02035 135 DDDYSILAEKKFKDFFSRYSIAV--GSTGNLGLSIGIISAALGFQVTVHMSADAK--------QWKKDKLRSKGVTVVEY 204 (431)
T ss_pred CcchhhhcchhhhhcccCceEEE--ECccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEE
Confidence 35665 478999999999999999999999999885 36899999999999999
Q ss_pred cCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch-hHHHHHHHHHHHHHHHHhcCC---CCCCCCeEEEeCCcchh
Q 021545 154 SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS-IGTWGYIEAIKEIEQQLQTGT---GGVKFDDIVVACGSGGT 229 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~-~~~~Gy~t~a~EI~~Q~~~~~---~~~~~D~ivv~vGtGGt 229 (311)
+. .|++ ..+ .++++.++.+..|++. + .|+ .-..||.+++.||++|+.... ....||+|++|+|+||+
T Consensus 205 ~~-~~~~-----a~~-~A~~la~~~~~~~~~d-~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGl 275 (431)
T TIGR02035 205 ES-DYGV-----AVE-EGRKNADADPMCYFVD-D-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGG 275 (431)
T ss_pred CC-CHHH-----HHH-HHHHHHHhcCCeEECC-C-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHH
Confidence 87 4653 223 3344555433445443 2 343 335899999999999995210 00147799999999999
Q ss_pred HHHHHHHHhhC-CCCCeEEEEeccCCchhhHH----------------HHHHhHhhhCCC-----------CCCCCeEEe
Q 021545 230 IAGLSLGSWLG-TLKAKVHAFSVCDDPDYFYD----------------YTQGLLDGLNAG-----------VDSRDIVNI 281 (311)
Q Consensus 230 ~aGl~~~~~~~-~~~~rVigV~~~g~~~~~~~----------------~i~~~~~g~~~~-----------~~~~dvv~v 281 (311)
++|++.++|+. ++++|||+|++.+++.+... ...++++|+++. ...|+++.|
T Consensus 276 i~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~V 355 (431)
T TIGR02035 276 PGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTV 355 (431)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEE
Confidence 99999999996 88999999999998764321 013466677662 247999999
Q ss_pred ccCCccchHHHHHHH
Q 021545 282 QNVSVYMTFKNILMN 296 (311)
Q Consensus 282 ~e~~~~~~~~~~~~~ 296 (311)
+|.+++..+..+..+
T Consensus 356 sD~ei~~a~~~L~~~ 370 (431)
T TIGR02035 356 DDYTLYDLLRILAES 370 (431)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999888877654
No 58
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=2.8e-33 Score=272.20 Aligned_cols=232 Identities=16% Similarity=0.144 Sum_probs=171.6
Q ss_pred ccCCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHH--cCC-------------------C
Q 021545 41 SLGHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVA--QGA-------------------D 92 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~--~G~-------------------~ 92 (311)
.....+|||++ ++.|++ |+|+|++++| +||||+|++.+.+..+.. .+. +
T Consensus 39 ~~~~~~TPL~~--~~~l~~~~G~~~v~~K~E~~q~p-tgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 115 (399)
T PRK08206 39 FPGYAPTPLVA--LPDLAAELGVGSILVKDESYRFG-LNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLG 115 (399)
T ss_pred CCCCCCCCCcc--hHHHHHHhCCCcEEEecccCcCC-CCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhcc
Confidence 45779999999 565542 7899998644 899999998876666542 222 1
Q ss_pred --EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHH
Q 021545 93 --CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNIL 170 (311)
Q Consensus 93 --~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~ 170 (311)
+|| ++|+||||+|+|++|+.+|++|+||||...+ ..|+..++++||+|+.++. .|++ .++.+
T Consensus 116 ~~~vv--~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~--------~~k~~~i~~~GA~Vi~v~~-~~~~-----~~~~a 179 (399)
T PRK08206 116 DITFA--TATDGNHGRGVAWAAQQLGQKAVIYMPKGSS--------EERVDAIRALGAECIITDG-NYDD-----SVRLA 179 (399)
T ss_pred CCEEE--EeCCcHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHHcCCEEEEeCC-CHHH-----HHHHH
Confidence 345 4688999999999999999999999999875 3578899999999999986 3543 22333
Q ss_pred HHHHHHcCCCcEEecC----CCCc--hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCC--C
Q 021545 171 KEKLLKEGRRPYVIPV----GGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT--L 242 (311)
Q Consensus 171 ~~~l~~~g~~~y~ip~----g~~n--~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~--~ 242 (311)
.+ +.++. ..|+++. ++.| +....||.+++.||++|+... +..||+||+|+|+|||++|++.+++++. +
T Consensus 180 ~~-~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~--~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~ 255 (399)
T PRK08206 180 AQ-EAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEM--GVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQ 255 (399)
T ss_pred HH-HHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhc--CCCCCEEEEcCCccHHHHHHHHHHHHHcCCC
Confidence 33 33322 2455542 3333 666899999999999999621 1259999999999999999999999873 4
Q ss_pred CCeEEEEeccCCchhhHH--H---------HHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 243 KAKVHAFSVCDDPDYFYD--Y---------TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 243 ~~rVigV~~~g~~~~~~~--~---------i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
.+|||+|++++++.+... . ..++.++++.. ...|+++.|+|.+++..+..+..
T Consensus 256 ~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~ 330 (399)
T PRK08206 256 RPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILAN 330 (399)
T ss_pred CCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhc
Confidence 789999999998764321 0 02344555431 23699999999999988887764
No 59
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.2e-33 Score=264.63 Aligned_cols=224 Identities=18% Similarity=0.118 Sum_probs=173.0
Q ss_pred ccccCCCCCCccccCCCCCCC-----CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH-----NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 113 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~-----~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~ 113 (311)
++....++|||++ ++.++. |+|+|++|+ +||+|+|++.+++..+.+ +.++||+. |+||||+|+|++|+
T Consensus 16 ~i~~~i~~TPl~~--~~~l~~~~~~i~~K~E~~np--tGS~K~R~a~~~~~~~~~-~~~~vv~a--SsGN~g~a~A~~a~ 88 (310)
T PRK08246 16 RIAPHIRRTPVLE--ADGAGFGPAPVWLKLEHLQH--TGSFKARGAFNRLLAAPV-PAAGVVAA--SGGNAGLAVAYAAA 88 (310)
T ss_pred HHhCcCCCCCeee--ccccccCCCEEEEEECCCCC--CCCCHHHHHHHHHHhhcc-cCCeEEEe--CCCHHHHHHHHHHH
Confidence 6677789999999 666643 799999997 799999999999888766 56778864 67999999999999
Q ss_pred HcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhH
Q 021545 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIG 193 (311)
Q Consensus 114 ~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~ 193 (311)
.+|++|++|||+..+ ..|+.+++.|||+|+.++. .|++ .++. ++++.++. ..| .+.++.|+..
T Consensus 89 ~~G~~~~iv~p~~~~--------~~k~~~~~~~GA~V~~~~~-~~~~-----~~~~-a~~~~~~~-g~~-~~~~~~n~~~ 151 (310)
T PRK08246 89 ALGVPATVFVPETAP--------PAKVARLRALGAEVVVVGA-EYAD-----ALEA-AQAFAAET-GAL-LCHAYDQPEV 151 (310)
T ss_pred HcCCCEEEEECCCCc--------HHHHHHHHHCCCEEEEeCC-CHHH-----HHHH-HHHHHHhc-CCE-eCCCCCChhh
Confidence 999999999998875 3589999999999999986 3543 2232 33344432 233 4566778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH-----HHHH----
Q 021545 194 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD-----YTQG---- 264 (311)
Q Consensus 194 ~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~-----~i~~---- 264 (311)
..||.+++.||++|++ .||+||+|+|+|||++|++.+++. ++|||||++++++.+... .+..
T Consensus 152 i~g~~t~~~Ei~eq~~------~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~ 222 (310)
T PRK08246 152 LAGAGTLGLEIEEQAP------GVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSG 222 (310)
T ss_pred hcchHHHHHHHHHhcC------CCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCC
Confidence 9999999999999984 499999999999999999999974 489999999998764321 1111
Q ss_pred -hHhhhCC-----------CCCCCCeEEeccCCccchHHHHHH
Q 021545 265 -LLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 265 -~~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
..++++. ....|+++.|+|.+++..+..+.-
T Consensus 223 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~ 265 (310)
T PRK08246 223 IAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWE 265 (310)
T ss_pred ceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHH
Confidence 1122222 123789999999998888776653
No 60
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.2e-33 Score=270.34 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=182.8
Q ss_pred CCchh-hhcCCCCccccccCCCCCCccccCCCCCC------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEE
Q 021545 25 PPSWA-SHLAPIPSHVFSLGHFPTPIHKWNLPNLP------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIIT 96 (311)
Q Consensus 25 ~p~w~-~~l~~~p~~~~~~~~~~TPL~~~~~~~Ls------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt 96 (311)
+..|+ .++-.++..++++++++|||++ +++|+ + |+|+|++|+ +||||+|++.+++.+|+++|.++||+
T Consensus 45 ~~~wry~~~lp~~~~~v~l~~G~TPLv~--~~~l~~~~g~~~l~~K~E~~nP--TGSfKdRga~~~v~~a~~~g~~~vv~ 120 (397)
T PRK06260 45 RGVWRYKELLPVKKKIVSLNEGGTPLYR--CPNLEKELGVKELYVKHEGANP--TGSFKDRGMTVGVTKALELGVKTVAC 120 (397)
T ss_pred cceeeehhhcCCCCCcccCCCCCCCeEE--chhhHHHhCCCcEEEEeCCCCC--CcCcHHHHHHHHHHHHHHcCCCEEEE
Confidence 44565 2444443336889999999999 66664 2 789999987 79999999999999999999999886
Q ss_pred eCCccchHHHHHHHHHHHcCCcEEEEEcCC-CcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHH
Q 021545 97 IGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLL 175 (311)
Q Consensus 97 ~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~-~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~ 175 (311)
+|+||||+|+|++|+.+|++|+||+|.. .+ ..|+.+++++||+|+.++. .|++ . .+.++++.
T Consensus 121 --aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~-----~-~~~a~~~~ 183 (397)
T PRK06260 121 --ASTGNTSASLAAYAARAGLKCYVLLPAGKVA--------LGKLAQALLHGAKVLEVDG-NFDD-----A-LDMVVELA 183 (397)
T ss_pred --eCCcHHHHHHHHHHHHcCCcEEEEEeCCCcc--------HHHHHHHHhcCCEEEEECC-cHHH-----H-HHHHHHHH
Confidence 4789999999999999999999999986 33 3588899999999999986 3543 2 22344454
Q ss_pred HcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCC------CCCeEEEE
Q 021545 176 KEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT------LKAKVHAF 249 (311)
Q Consensus 176 ~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~------~~~rVigV 249 (311)
++. ..|+++ + .|+....||.+++.||++|+.. ..||+||+|+|+||+++|++.+|+++. ..+|||||
T Consensus 184 ~~~-g~y~~~-~-~np~~~~G~~t~a~Ei~eQl~~----~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~V 256 (397)
T PRK06260 184 KEG-KIYLLN-S-INPFRLEGQKTIGFEIADQLGW----EVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGI 256 (397)
T ss_pred hhC-CEEeec-C-CCchhhcchhhHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEE
Confidence 433 355553 3 3899999999999999999852 259999999999999999999999764 34799999
Q ss_pred eccCCchhhHHH------------HHHhHhhhCC--CC-----------CCCCeEEeccCCccchHHHHHH
Q 021545 250 SVCDDPDYFYDY------------TQGLLDGLNA--GV-----------DSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 250 ~~~g~~~~~~~~------------i~~~~~g~~~--~~-----------~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
+++++....... ..++.+++.. +. ..++++.|+|.+++.++..+..
T Consensus 257 q~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~ 327 (397)
T PRK06260 257 QAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLAR 327 (397)
T ss_pred ecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHH
Confidence 999976532210 1112222222 11 1246888888888877766544
No 61
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=2.3e-32 Score=269.24 Aligned_cols=202 Identities=17% Similarity=0.175 Sum_probs=162.6
Q ss_pred CCchhh-hcCCCCccccccCCCCCCccccCCCCCC-----C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEe
Q 021545 25 PPSWAS-HLAPIPSHVFSLGHFPTPIHKWNLPNLP-----H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITI 97 (311)
Q Consensus 25 ~p~w~~-~l~~~p~~~~~~~~~~TPL~~~~~~~Ls-----~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~ 97 (311)
+..|+= ++-.++..++.+.+++|||++ ++ ++ + |+|+|++|+ +||||+|++.+++.+|++.|.++||+
T Consensus 44 ~~~wry~~~lp~~~~~v~l~~G~TPLv~--~~-~~~~~g~~l~~K~E~~nP--tGSfKdR~a~~~i~~a~~~g~~~vv~- 117 (442)
T PRK05638 44 PGVWRYKELLPQVKKIISLGEGGTPLIR--AR-ISEKLGENVYIKDETRNP--TGSFRDRLATVAVSYGLPYAANGFIV- 117 (442)
T ss_pred CChhhhhhhCCCcCCccccCCCCCcEEc--cc-chHHhCCeEEEEeCCCCC--CCChHHHHHHHHHHHHHHcCCCEEEE-
Confidence 445552 333333345789999999999 42 32 2 789999987 79999999999999999999999886
Q ss_pred CCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHc
Q 021545 98 GGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE 177 (311)
Q Consensus 98 g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~ 177 (311)
+|+||||+|+|++|+.+|++|+||||+..+ ..|+.+++++||+|+.++. .|++ .++ .++++.++
T Consensus 118 -aSsGN~g~alA~~aa~~G~~~~i~vp~~~~--------~~k~~~~~~~GA~vi~v~~-~~~~-----~~~-~a~~~~~~ 181 (442)
T PRK05638 118 -ASDGNAAASVAAYSARAGKEAFVVVPRKVD--------KGKLIQMIAFGAKIIRYGE-SVDE-----AIE-YAEELARL 181 (442)
T ss_pred -eCCChHHHHHHHHHHHcCCCEEEEEeCCCC--------HHHHHHHHhcCcEEEEECC-CHHH-----HHH-HHHHHHHh
Confidence 478999999999999999999999999874 4689999999999999975 3543 222 34444443
Q ss_pred CCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCC------CCeEEEEec
Q 021545 178 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSV 251 (311)
Q Consensus 178 g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~------~~rVigV~~ 251 (311)
...|+++ ++.||...+||.+++.||++|+. ||+||+|+|+||+++|++.+|+++.+ .+|||||++
T Consensus 182 -~~~~~~~-~~~np~~~eG~~t~a~Ei~eq~~-------pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 182 -NGLYNVT-PEYNIIGLEGQKTIAFELWEEIN-------PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred -CCeEecC-CCCChhHhhhHHHHHHHHHHHHC-------cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 2456554 56799999999999999999973 99999999999999999999998644 369999999
Q ss_pred cCCchh
Q 021545 252 CDDPDY 257 (311)
Q Consensus 252 ~g~~~~ 257 (311)
++....
T Consensus 253 ~~~~p~ 258 (442)
T PRK05638 253 ERCNPI 258 (442)
T ss_pred CCCCHH
Confidence 876543
No 62
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.3e-32 Score=260.86 Aligned_cols=229 Identities=16% Similarity=0.145 Sum_probs=176.0
Q ss_pred ccccCCCCCCccccCCCCCC------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLP------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
++.+..++|||++ +++|+ + |+|+|++++ +||||+|++.+++.++.++|..+||+ +|+||||+|+|++
T Consensus 16 ~~~l~~g~TPl~~--~~~l~~~~g~~~i~~K~E~~np--tGSfKdR~a~~~l~~a~~~g~~~vv~--aSsGN~g~a~A~~ 89 (328)
T TIGR00260 16 LVDLGEGVTPLFR--SPALVANVGIKNLYVLELFHNP--TLSFKDRGMAVALTKALELGNDTVLC--ASTGNTGAAAAAY 89 (328)
T ss_pred hhhhccCCccCcc--chHHHHhcCCccEEehhhccCC--chhhHhhhHHHHHHHHHHcCCCEEEE--eCCcHHHHHHHHH
Confidence 5788899999998 55543 3 789999986 89999999999999999999888886 4789999999999
Q ss_pred HHHcCCcEEEEEcCC-CcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 112 AKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~-~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
|+.+|++|++|||+. .+ +.|+..++.+||+|+.++. .|++ . .+.++++.++.+ + ++.+..|
T Consensus 90 a~~~g~~~~v~~p~~~~s--------~~k~~~~~~~GA~Vi~~~~-~~~~-----~-~~~~~~~~~~~~--~-~~~~~~n 151 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKIS--------LGKLAQALGYNAEVVAIDG-NFDD-----A-QRLVKQLFGDKE--A-LGLNSVN 151 (328)
T ss_pred hccCCCcEEEEECCCCCC--------HHHHHHHHhcCcEEEEecC-CHHH-----H-HHHHHHHHhhcC--e-eecccCC
Confidence 999999999999997 54 3689999999999999986 3553 2 233444444321 2 2333445
Q ss_pred --hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC---C--CCCeEEEEeccCCchhhHHHH-
Q 021545 191 --SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG---T--LKAKVHAFSVCDDPDYFYDYT- 262 (311)
Q Consensus 191 --~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~---~--~~~rVigV~~~g~~~~~~~~i- 262 (311)
+..+.||.+++.||++|+.. ..+|+||+|+|+||+++|++.++++. + ...+|++|++.+++.......
T Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~~----~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~ 227 (328)
T TIGR00260 152 SIPYRLEGQKTYAFEAVEQLGW----EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLE 227 (328)
T ss_pred CCCeEeeeehhHHHHHHHHhCC----CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHc
Confidence 77889999999999999862 26999999999999999999999873 1 012999999999854432211
Q ss_pred ----------HHhHhhhCCC-------------CCCCCeEEeccCCccchHHHHHH
Q 021545 263 ----------QGLLDGLNAG-------------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 263 ----------~~~~~g~~~~-------------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
.++.++++.. ...++++.|+|.+++.++..+..
T Consensus 228 ~g~~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~ 283 (328)
T TIGR00260 228 SGQWEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAR 283 (328)
T ss_pred CCCcCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHH
Confidence 2233443321 23678999999999988877654
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.5e-31 Score=259.11 Aligned_cols=199 Identities=18% Similarity=0.131 Sum_probs=149.3
Q ss_pred cccCCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAA 112 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a 112 (311)
..+...+|||++ +++|+. |+|+|++|+ +||+|+|.+..++..+.+.|.+++|+. +++||||+|+|++|
T Consensus 44 ~~~~~~~TPL~~--~~~l~~~~g~~~iy~K~E~~np--tGS~K~R~a~~~~~~a~~~g~~~vi~e-~ssGN~G~alA~~a 118 (385)
T TIGR00263 44 RNYAGRPTPLTF--APNLTEALGGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKKRIIAE-TGAGQHGVATATAA 118 (385)
T ss_pred HHhCCCCCCcee--hHHHHHHhCCCeEEEEeCCCCC--CccchHHHHHHHHHHHHHcCCCEEEEE-cCcHHHHHHHHHHH
Confidence 345567999999 566542 789999997 799999999999999988898877753 46799999999999
Q ss_pred HHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc--cccccCcHHHHHHHHHHHHHcCCCcEEecCCCC-
Q 021545 113 KYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGS- 189 (311)
Q Consensus 113 ~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~- 189 (311)
+++|++|+||||+.... ....|+++++++||+|+.++.+ .|+ +.++++++++.++.++.+++..+..
T Consensus 119 ~~~Gl~~~Iv~p~~~~~-----~~~~~~~~~~~~GA~Vv~v~~~~~~~~-----~a~~~~~~~~~~~~~~~~y~~~~~~~ 188 (385)
T TIGR00263 119 ALLGLDCEVYMGAEDVE-----RQKPNVFRMELLGAKVIPVTSGSGTLK-----DAVNEALRDWVTSVDDTHYVLGSAVG 188 (385)
T ss_pred HHcCCCEEEEecCCccc-----ccchHHHHHHHcCCEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCceEEeCCcCC
Confidence 99999999999985321 1135789999999999999742 232 2223444454444334444432222
Q ss_pred -c--hhH-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 190 -N--SIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 190 -n--~~~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
+ +.. ..|+.+++.||++|+.+. .+..||+||+|+|+|||++|++.++.. .+++|||||+++++.
T Consensus 189 ~~p~~~~~~~~~~t~g~Ei~~Ql~~~-~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~ 256 (385)
T TIGR00263 189 PHPFPTMVRDFQSVIGEEAKEQILEQ-EGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLG 256 (385)
T ss_pred CCCchHHHHHHhhHHHHHHHHHHHhh-hCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCc
Confidence 2 233 377889999999998531 013589999999999999999998855 699999999999964
No 64
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.98 E-value=1.7e-31 Score=257.01 Aligned_cols=238 Identities=16% Similarity=0.120 Sum_probs=170.6
Q ss_pred CCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHc
Q 021545 43 GHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL 115 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~ 115 (311)
...||||++ +++|+. |+|+|++|+ +||+|+|.+..++..|.++|++.+|+. +++||||+|+|++|+.+
T Consensus 31 ~~~~TPL~~--l~~l~~~~g~~~l~~K~E~~np--tgS~K~R~a~~~~~~a~~~g~~~vv~~-~ssGN~g~alA~~a~~~ 105 (365)
T cd06446 31 VGRPTPLYR--AKRLSEYLGGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKKRVIAE-TGAGQHGVATATACALF 105 (365)
T ss_pred CCCCCCcee--hHHHHHhhCCceEEEEeccCCC--ccchhHHHHHHHHHHHHHcCCCeEEEe-cCchHHHHHHHHHHHHh
Confidence 446999999 666542 789999988 689999999999999999999888874 35699999999999999
Q ss_pred CCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcC-CCcEEecCC-CCch--
Q 021545 116 NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVIPVG-GSNS-- 191 (311)
Q Consensus 116 Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g-~~~y~ip~g-~~n~-- 191 (311)
|++|++|+|+..+.. ..+|+.+++++||+|+.++.. ++. ..+.+..+.+.+.++. +..|++... +.++
T Consensus 106 G~~~~ivvp~~~~~~-----~~~~~~~~~~~GAeV~~~~~~-~~~--~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~ 177 (365)
T cd06446 106 GLECEIYMGAVDVER-----QPLNVFRMELLGAEVVPVPSG-SGT--LKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYP 177 (365)
T ss_pred CCCeEEEEcCCcccc-----ccchHHHHHHCCCEEEEeCCC-CCc--HHHHHHHHHHHHHhccCCceEecccccCCCCch
Confidence 999999999864311 136889999999999999853 210 1112223333333332 234443211 1122
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHH--------
Q 021545 192 -IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT-------- 262 (311)
Q Consensus 192 -~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i-------- 262 (311)
....||.+++.||++|+.... +..||+||+|+|||||++|++.+++. .+++|||||++++++.+...+.
T Consensus 178 ~~~~ag~~t~~~EI~~Q~~~~~-~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~ 255 (365)
T cd06446 178 NMVRDFQSVIGEEAKKQILEKE-GELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTA 255 (365)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-CCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCc
Confidence 235788899999999996310 13699999999999999999998877 4699999999999876532100
Q ss_pred ---------------------HHhHhhhCC-----------CCCCCCeEEeccCCccchHHHHHH
Q 021545 263 ---------------------QGLLDGLNA-----------GVDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 263 ---------------------~~~~~g~~~-----------~~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
.+++++++. ....|+++.|+|.+++..+..+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~ 320 (365)
T cd06446 256 GVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLAR 320 (365)
T ss_pred ceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHH
Confidence 112233332 123578999999988888776654
No 65
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.97 E-value=2.5e-31 Score=256.39 Aligned_cols=229 Identities=16% Similarity=0.139 Sum_probs=173.1
Q ss_pred CCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHc-----------------------CCCEE
Q 021545 45 FPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQ-----------------------GADCI 94 (311)
Q Consensus 45 ~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~-----------------------G~~~v 94 (311)
.+|||++ ++.|++ |+|.|.++++ +||||+|++.+.+..++++ |.++|
T Consensus 21 ~~TPL~~--~~~l~~~~g~~~v~~K~E~~~~~-tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (376)
T TIGR01747 21 RPTPLCA--LDHLANLLGLKKILVKDESKRFG-LNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATF 97 (376)
T ss_pred CCCCCcc--hHHHHHHhCCCcEEEeeCCCCCC-CCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEE
Confidence 8999999 566542 6789998754 7999999998887776442 35678
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHH
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKL 174 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l 174 (311)
|+ +|+||||+|+|++|+.+|++|+||||+..+ ..|+..++.+||+|+.++. .|++ ..+ .++++
T Consensus 98 v~--aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~--------~~k~~~i~~~GAeVi~v~~-~~~~-----a~~-~a~~~ 160 (376)
T TIGR01747 98 AT--ATDGNHGRGVAWAAQQLGQKAVVYMPKGSA--------QERVENILNLGAECTITDM-NYDD-----TVR-LAMQM 160 (376)
T ss_pred EE--ECccHHHHHHHHHHHHcCCCEEEEECCCCC--------HHHHHHHHhCCCEEEEECC-CHHH-----HHH-HHHHH
Confidence 86 478999999999999999999999999875 3689999999999999986 4653 222 23344
Q ss_pred HHcCCCcEEecC----CCC--chhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCC-CC-CeE
Q 021545 175 LKEGRRPYVIPV----GGS--NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGT-LK-AKV 246 (311)
Q Consensus 175 ~~~g~~~y~ip~----g~~--n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~-~~-~rV 246 (311)
.++. ..|+++. ++. ++..+.||.+++.||++|+.... +..||+||+|+|+||+++|++.+++... ++ +||
T Consensus 161 ~~~~-g~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~-~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~v 238 (376)
T TIGR01747 161 AQQH-GWVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMG-SVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHS 238 (376)
T ss_pred HHhc-CcEEeccccccccccCCchHHHHHHHHHHHHHHHhhccC-CCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEE
Confidence 4432 2466642 333 36668999999999999996210 1269999999999999999999997653 33 699
Q ss_pred EEEeccCCchhhHH-------------HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 247 HAFSVCDDPDYFYD-------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 247 igV~~~g~~~~~~~-------------~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
|+|++.+++.+... ...+++++++.. ...+++|.|+|.++...+..+..
T Consensus 239 i~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~ 311 (376)
T TIGR01747 239 IVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGA 311 (376)
T ss_pred EEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhc
Confidence 99999998875432 123566677652 23789999999999888776653
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=3.7e-31 Score=256.46 Aligned_cols=238 Identities=17% Similarity=0.158 Sum_probs=171.0
Q ss_pred ccCCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHH
Q 021545 41 SLGHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 113 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~ 113 (311)
.++..||||++ +++|++ |+||||+++ +||+|+|.+...+..|++.|.+.+|+. +++||||+|+|++|+
T Consensus 57 ~~~g~pTPL~~--~~~Ls~~~Gg~~IylK~Edlnp--tGS~K~r~al~~~l~A~~~G~~~vI~e-tgsGnhG~A~A~aaa 131 (402)
T PRK13028 57 HYVGRPTPLYH--AKRLSEELGGAQIYLKREDLNH--TGAHKINNCLGQALLAKRMGKKRLIAE-TGAGQHGVATATAAA 131 (402)
T ss_pred HhCCCCCCeee--hHHhHhhcCCCeEEEEECCCCC--CcchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHH
Confidence 45657999999 666653 789999998 799999999999999999998877753 456999999999999
Q ss_pred HcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc--cccccCcHHHHHHHHHHHHHc-CCCcEEecCC-CC
Q 021545 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKE-GRRPYVIPVG-GS 189 (311)
Q Consensus 114 ~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~-g~~~y~ip~g-~~ 189 (311)
.+|++|+||||+..+.. ...|+.+|+++||+|+.|+.+ .++ +.++.+.+.+.++ ....|+++.. +.
T Consensus 132 ~~Gl~~~I~m~~~d~~~-----q~~nv~~mr~~GAeVi~v~~g~~~~~-----~a~~~a~~~~~~~~~~~~y~~~s~~gp 201 (402)
T PRK13028 132 LFGLECEIYMGEVDIER-----QHPNVFRMKLLGAEVVPVTRGGRTLK-----EAVDSAFEDYLKDPDNTHYAIGSVVGP 201 (402)
T ss_pred HcCCCEEEEECCCcchh-----hHHHHHHHHHcCCEEEEEcCCCCCHH-----HHHHHHHHHHHHhcCCcEEEecCcCCC
Confidence 99999999999864311 136899999999999999752 232 2233333334443 2334555432 22
Q ss_pred c--hhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccC--------Cchhh
Q 021545 190 N--SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD--------DPDYF 258 (311)
Q Consensus 190 n--~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g--------~~~~~ 258 (311)
+ +..+ +|+.+++.||.+|+.+. .+..||+||+|+|+||+++|++.+|++ .+++|||||++.| +....
T Consensus 202 ~p~p~~v~~~q~tig~Ei~~Q~~~~-~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~ 279 (402)
T PRK13028 202 HPFPMMVRDFQSVIGEEAREQFLEM-TGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLT 279 (402)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHh-hCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCccccccccccc
Confidence 2 3333 57889999999998531 124699999999999999999999986 4899999999998 33221
Q ss_pred H--H-------------------HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 259 Y--D-------------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 259 ~--~-------------------~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
. . ....+..++..+ ...++++.|+|.+....+..+..
T Consensus 280 ~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~ 348 (402)
T PRK13028 280 LGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSR 348 (402)
T ss_pred CCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHH
Confidence 1 0 012233333321 22478999999988888776653
No 67
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=99.97 E-value=6.1e-31 Score=254.57 Aligned_cols=197 Identities=19% Similarity=0.156 Sum_probs=150.2
Q ss_pred cCCCCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHH
Q 021545 42 LGHFPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 42 ~~~~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
+...||||++ +++|++ |+||||+++ +||+|+|.+...+..|++.|.++||+. +++||||+|+|++|++
T Consensus 54 ~~grpTPL~~--~~~Ls~~~gg~~IylK~Edlnp--tGS~K~r~al~~~l~A~~~Gk~~vIae-tgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 54 YVGRPTPLYF--AERLSEHLGGAKIYLKREDLNH--TGAHKINNVLGQALLAKRMGKKRIIAE-TGAGQHGVATATAAAL 128 (397)
T ss_pred hcCCCCCceE--hHHHHHHcCCCeEEEEECCCCC--ccchHHHHHHHHHHHHHHcCCCeEEEe-cCcHHHHHHHHHHHHH
Confidence 4556899999 677663 789999998 799999999999998999998888753 4579999999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc--cccccCcHHHHHHHHHHHHHcCCC-cEEecCC-CCc
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKEGRR-PYVIPVG-GSN 190 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~g~~-~y~ip~g-~~n 190 (311)
+|++|+||||+.... ....|+.+|+++||+|+.|+.+ .++ +.+.++.+.+.++.++ .|+++.. +.+
T Consensus 129 ~Gl~c~I~mp~~d~~-----rq~~nv~~m~~lGA~Vv~v~~g~~~l~-----da~~ea~~~~~~~~~~~~y~~gs~~gph 198 (397)
T PRK04346 129 LGLECVIYMGAEDVE-----RQALNVFRMKLLGAEVVPVTSGSRTLK-----DAVNEALRDWVTNVEDTHYLIGSVAGPH 198 (397)
T ss_pred cCCcEEEEecCCchh-----hhhhHHHHHHHCCCEEEEECCCCCCHH-----HHHHHHHHHHHHhCCCCeEEeCCcCCCC
Confidence 999999999985311 0135899999999999999853 222 1223334444443223 4554422 223
Q ss_pred hh--H-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 191 SI--G-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 191 ~~--~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
|. . ..|+.+++.||.+|+.+.. +..||+||+|+|+||+++|++.+|+. ++++|||||++.|+.
T Consensus 199 p~p~~v~~~q~tig~Ei~eQ~~~~~-g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~ 264 (397)
T PRK04346 199 PYPTMVRDFQSVIGEEAKAQILEKE-GRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKG 264 (397)
T ss_pred CchHHHHHhcchHHHHHHHHHHHhh-CCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCc
Confidence 32 2 3588899999999986321 24699999999999999999999976 789999999999864
No 68
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.97 E-value=3.1e-31 Score=247.77 Aligned_cols=231 Identities=24% Similarity=0.294 Sum_probs=171.1
Q ss_pred cccCCCCCCccccCCC-----CCCC---CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHH
Q 021545 40 FSLGHFPTPIHKWNLP-----NLPH---NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~-----~Ls~---~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
+.+.+++|||++ ++ .+.. |+|+|++++ +||||+|++.+++.+++++|.++||. +|+||||+|+|++
T Consensus 1 i~~~~~~TPl~~--~~~~~~~~~~~~~i~~K~E~~~p--tgs~K~R~a~~~l~~a~~~~~~~vv~--assGN~g~a~A~~ 74 (306)
T PF00291_consen 1 ISLGIGPTPLVR--LPSRLLSELGGANIYLKREDLNP--TGSFKDRGAYYLLSRAKEKGGRTVVG--ASSGNHGRALAYA 74 (306)
T ss_dssp GGGGSSSS-EEE--EHEHHHHHCTTSEEEEEEGGGST--TSBTHHHHHHHHHHHHHHTTTSEEEE--ESSSHHHHHHHHH
T ss_pred CcCCCcCCCEEE--CccccchhccCCeEEEEECCCCC--cCCcccccchhhhhhccccccceeee--eccCCceehhhhh
Confidence 356789999999 43 1111 899999995 89999999999999999999898874 5789999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHH----HHHHcCCCcEEecCC
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKE----KLLKEGRRPYVIPVG 187 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~----~l~~~g~~~y~ip~g 187 (311)
|+.+|++|++|+|...+ ..|+.+++.+||+|+.++.. ++.. .... .+.++ .+... ... +..+
T Consensus 75 a~~~g~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~--~~~-~~~~ 140 (306)
T PF00291_consen 75 AARLGLKCTIVVPEDVS--------PEKLKQMRALGAEVILVPGD-VEGA-FDDA-QELAKERAELLSPF--NGE-LNQY 140 (306)
T ss_dssp HHHHTCEEEEEEETTSH--------HHHHHHHHHTTCEEEEESST-HHHH-HHHH-HHHHHHHHHHHHHS--TTE-ESTT
T ss_pred hhhccccceeeeccccc--------cccccceeeecceEEEcccc-cccc-cccc-cccccccccccccc--ccc-cCcc
Confidence 99999999999999864 36899999999999988763 2211 0111 11221 12111 112 3333
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhh--CCCCCeEEEEeccCCchhhHHHH---
Q 021545 188 GSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL--GTLKAKVHAFSVCDDPDYFYDYT--- 262 (311)
Q Consensus 188 ~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~--~~~~~rVigV~~~g~~~~~~~~i--- 262 (311)
.|+....||.+++.||.+|+.. .++|+||+|+|||||++|++.+++. . +++|||||++.++..+....-
T Consensus 141 -~~~~~~~g~~~~~~Ei~~q~~~----~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~ 214 (306)
T PF00291_consen 141 -NNPNVIAGYATIGLEIYEQLGK----PDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGK 214 (306)
T ss_dssp -TSHHHHHHHHHHHHHHHHHHTT----ESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTS
T ss_pred -cchhhhhhhhhcchhccccccc----ccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccc
Confidence 7888999999999999999951 2235599999999999999999999 7 899999999988865431111
Q ss_pred ------HHhHhhhCCCC--C-----------CCCeEEeccCCccchHHHHHHH
Q 021545 263 ------QGLLDGLNAGV--D-----------SRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 263 ------~~~~~g~~~~~--~-----------~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
...+.+++.+. . .++++.|+|.+.+.++..+...
T Consensus 215 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~ 267 (306)
T PF00291_consen 215 PIRLPGESTIAGLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAER 267 (306)
T ss_dssp CEHSSCHHSSTGGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHH
T ss_pred cccccceeeeecccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 12344665533 1 3456899999988888776653
No 69
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.97 E-value=6.9e-31 Score=254.96 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=169.3
Q ss_pred CCCCccccCCCCCCC-------CCCCCCCCCCCCCchhHHhHHHHHHHHHH--cC---------------------CCEE
Q 021545 45 FPTPIHKWNLPNLPH-------NTERDDLSGMQLSGNKVRKLEFLMADAVA--QG---------------------ADCI 94 (311)
Q Consensus 45 ~~TPL~~~~~~~Ls~-------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~--~G---------------------~~~v 94 (311)
.+|||++ ++.|+. |+|+|+++++ +||||+|++.+.+..+.+ .| ..+|
T Consensus 40 ~~TPL~~--~~~L~~~~g~~~v~lK~E~~q~~-tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 40 QPTPLAE--LDNLAKHLGVGSILVKDESYRFG-LNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred cCCCCcc--hHHHHHHhCCCcEEEeeCCCCCC-cCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 8999998 555542 7899999865 899999999888776422 11 2367
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHH
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKL 174 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l 174 (311)
|+ +|+||||+|+|++|+.+|++|+||||+..+ ..|+..+++|||+|+.++. .|++ . .+.++++
T Consensus 117 v~--aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~--------~~K~~~ir~~GAeVi~~~~-~~~~-----a-~~~a~~~ 179 (396)
T TIGR03528 117 VT--ATDGNHGRGVAWAANQLGQKSVVYMPKGSA--------QIRLENIRAEGAECTITDL-NYDD-----A-VRLAWKM 179 (396)
T ss_pred EE--ECccHHHHHHHHHHHHcCCCEEEEEeCCCc--------HHHHHHHHhcCCEEEEECC-CHHH-----H-HHHHHHH
Confidence 75 478999999999999999999999999875 3589999999999999986 3543 2 2233344
Q ss_pred HHcCCCcEEecC----CCCc--hhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhh-CCCC-CeE
Q 021545 175 LKEGRRPYVIPV----GGSN--SIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-GTLK-AKV 246 (311)
Q Consensus 175 ~~~g~~~y~ip~----g~~n--~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~-~~~~-~rV 246 (311)
+++. ..|++.. ++.| +..+.||.+++.||++|++..+ ...||+||+|+|+||+++|++.+++. ..++ +||
T Consensus 180 a~~~-g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~-~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~v 257 (396)
T TIGR03528 180 AQEN-GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQG-VEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPIT 257 (396)
T ss_pred HHhc-CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcC-CCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEE
Confidence 4432 2455532 3333 5567899999999999996311 12599999999999999999998844 4444 499
Q ss_pred EEEeccCCchhhHH-------------HHHHhHhhhCCC-----------CCCCCeEEeccCCccchHHHHHH
Q 021545 247 HAFSVCDDPDYFYD-------------YTQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 247 igV~~~g~~~~~~~-------------~i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~~~~~~ 295 (311)
|+|++++.+.+... ...++.++++.. ...|+++.|+|.+++..+..+..
T Consensus 258 i~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~ 330 (396)
T TIGR03528 258 VIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGN 330 (396)
T ss_pred EEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhc
Confidence 99999987765422 123466666541 24799999999999888776643
No 70
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-31 Score=238.42 Aligned_cols=223 Identities=19% Similarity=0.203 Sum_probs=174.2
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHH-HcCCCEEEEeCCccchHHHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAV-AQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~-~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
|++.-...||+.. ...|.+ ++|+|.++. +|+||+|++.+.+..+. ++..+.|||+ |+|||++|+|++
T Consensus 18 rik~~ihkTpVlT--S~~ln~~~g~~vfFKcE~fQK--tGaFKfRGAlNav~~l~~ek~~kgvith--SSGNHaqAlala 91 (323)
T KOG1251|consen 18 RIKPFIHKTPVLT--SENLNEKVGRHVFFKCENFQK--TGAFKFRGALNAVSSLKAEKRAKGVITH--SSGNHAQALALA 91 (323)
T ss_pred HHHhhhccCceec--hhhHHHHhhhheEeehhhhhh--ccceehhhhHHHHHHhhHhhhcCceEee--cCCcHHHHHHHH
Confidence 6777778899987 444433 689999998 79999999998877765 5566789998 569999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCch
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNS 191 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~ 191 (311)
|+.+|++|+||||.+.|. .|+..++.|||+|+++++ |.+. .+.++.++.++.....+.|.++...
T Consensus 92 Ak~~giPa~IVvP~~AP~--------~Kv~a~~~Yga~ii~~e~--~~~s-----RE~va~~ltee~g~~~i~Py~~p~v 156 (323)
T KOG1251|consen 92 AKILGIPATIVVPKDAPI--------CKVAATRGYGANIIFCEP--TVES-----RESVAKDLTEETGYYLIHPYNHPSV 156 (323)
T ss_pred HHhcCCCeEEEecCCChH--------HHHHHHHhcCceEEEecC--ccch-----HHHHHHHHHHhcCcEEeCCCCCcce
Confidence 999999999999999863 579999999999999986 3321 1445556655443444555655555
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh----------HHH
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF----------YDY 261 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~----------~~~ 261 (311)
++++| |+|.||++|.+ .+|.+|||+|+||+++|++.+.+.+.|.++|++|+|++..... ...
T Consensus 157 IaGqg--TiA~ElleqVg------~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~t 228 (323)
T KOG1251|consen 157 IAGQG--TIALELLEQVG------EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDT 228 (323)
T ss_pred eeccc--hHHHHHHHhhC------ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCC
Confidence 55555 99999999995 5999999999999999999999999999999999998765322 123
Q ss_pred HHHhHhhhCCC-----------CCCCCeEEeccCCccchH
Q 021545 262 TQGLLDGLNAG-----------VDSRDIVNIQNVSVYMTF 290 (311)
Q Consensus 262 i~~~~~g~~~~-----------~~~~dvv~v~e~~~~~~~ 290 (311)
-++++||...+ ..+|||+.|+|.++...+
T Consensus 229 p~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~~~l 268 (323)
T KOG1251|consen 229 PKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIKEAL 268 (323)
T ss_pred chhhhhhhhhccccccchHHHHHHhhhheeecHHHHHHHH
Confidence 35567777652 348999999998765443
No 71
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.97 E-value=4.7e-30 Score=250.40 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=153.2
Q ss_pred cccCCCCCCccccCCCCCCC--------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLPH--------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVA 111 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls~--------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~ 111 (311)
+.+...+|||++ +++|++ |+|+|++++ +||||+|.+.+++..++++|.+++|+. +++||||+|+|++
T Consensus 62 ~~l~g~pTPL~r--~~~L~~~lg~~~~Iy~K~E~~nP--tGS~K~R~A~~~~~~a~~~G~~~~vte-tssGN~G~alA~a 136 (419)
T TIGR01415 62 YAQIGRPTPLIR--AKGLEELLGTPARIYYKYESVSP--TGSHKINTAIAQAYYAKIEGAKRLVTE-TGAGQWGSALSLA 136 (419)
T ss_pred HHhcCCCCCeEE--ccchhhhhCCCceEEEEECCCCC--CCCcHHHHHHHHHHHHHHcCCCeEEEe-cCchHHHHHHHHH
Confidence 445657999999 666642 789999987 799999999999999999999999875 3459999999999
Q ss_pred HHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcH-------------HHHHHHHHHHHHcC
Q 021545 112 AKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSV-------------TLTNILKEKLLKEG 178 (311)
Q Consensus 112 a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~-------------~~~~~~~~~l~~~g 178 (311)
|+.+|++|+||||...+.++ ..++.+|++|||+|+.++.+ +++.+.. ..+..+.+..++++
T Consensus 137 aa~~Gl~~~V~mp~~s~~~k-----~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 137 GALFGLECKVFMVRVSFNQK-----PYRKYLMELYGAEVIPSPSE-FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHcCCcEEEEEeCCCcccC-----HHHHHHHHHcCCEEEEECCc-hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999998553211 35788999999999999863 4332110 01233444444433
Q ss_pred CCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHh---hCC-CCCeEEEEeccCC
Q 021545 179 RRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW---LGT-LKAKVHAFSVCDD 254 (311)
Q Consensus 179 ~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~---~~~-~~~rVigV~~~g~ 254 (311)
+..|+++ +..|+. ..|+.+++.||++|++.. +..||+||+|+|+||+++|++.+|. ..+ +++|||||++++.
T Consensus 211 ~~~y~~~-~~~n~~-~~h~~~ig~Ei~~Ql~~~--g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~ 286 (419)
T TIGR01415 211 DTKYSLG-SVLNHV-LLHQTVIGLEAKKQMEEA--GEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKAC 286 (419)
T ss_pred CCEEEeC-CCCcHH-HHHHHHHHHHHHHHHHhc--CCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 3445543 334433 346779999999999731 2369999999999999999998883 223 5899999999998
Q ss_pred chhh
Q 021545 255 PDYF 258 (311)
Q Consensus 255 ~~~~ 258 (311)
+...
T Consensus 287 ~~l~ 290 (419)
T TIGR01415 287 PTLT 290 (419)
T ss_pred hhhh
Confidence 6543
No 72
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=8.2e-30 Score=260.01 Aligned_cols=214 Identities=16% Similarity=0.112 Sum_probs=158.2
Q ss_pred CCCCCCccccCCCCCC-----------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLP-----------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAV 110 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls-----------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~ 110 (311)
+..||||++ +++|+ + |+||||+|+ +||||+|.+.+++..|++.|++++|.. .++||||+|+|+
T Consensus 323 iGrpTPL~~--~~~Ls~~l~~~~G~g~~IylK~E~lNp--TGS~KdR~Al~~i~~A~~~G~~~~Ive-tssGNhG~AlA~ 397 (695)
T PRK13802 323 VGRPSPLTE--APRFAERVKEKTGLDARVFLKREDLNH--TGAHKINNALGQALLVKRMGKTRVIAE-TGAGQHGVATAT 397 (695)
T ss_pred CCCCCceeE--chhhhhhhHhhcCCCceEEEEEccCCC--cCCcHHHHHHHHHHHHHHcCCCCEEEE-ECcHHHHHHHHH
Confidence 434999999 56543 1 789999998 799999999999999999998754432 356999999999
Q ss_pred HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCC-CcEEecCC-C
Q 021545 111 AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGR-RPYVIPVG-G 188 (311)
Q Consensus 111 ~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~-~~y~ip~g-~ 188 (311)
+|+++|++|+||||+..... ...|+.+|++|||+|+.++.+.. ...+.++++.+.+.++.+ ..|+++.. +
T Consensus 398 aaA~~Gl~c~Ivmp~~~~~~-----~~~nv~~mr~lGAeVi~v~~g~~---~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g 469 (695)
T PRK13802 398 VCAMLGLKCRIYMGQIDARR-----QALNVARMRMLGAEVVEVTLGDR---ILKDAINEALRDWVTNVKDTHYLLGTVAG 469 (695)
T ss_pred HHHHcCCCEEEEEeCCcccc-----cHHHHHHHHHcCCEEEEECCCCC---cHHHHHHHHHHHHHHhcCCceEeecccCC
Confidence 99999999999999864211 14689999999999999974321 111222334444544322 34555543 2
Q ss_pred Cchh---HHHHHHHHHHHHHHHHhcCCCC-CCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHH
Q 021545 189 SNSI---GTWGYIEAIKEIEQQLQTGTGG-VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQG 264 (311)
Q Consensus 189 ~n~~---~~~Gy~t~a~EI~~Q~~~~~~~-~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~ 264 (311)
.+|. ...|+.+++.||++|+.+. .+ ..||+||+|+||||+++|++.+|++ .+.+|||||+++|.......+..+
T Consensus 470 ~~P~p~~v~agq~tiG~EI~eQ~~~~-~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~ 547 (695)
T PRK13802 470 PHPFPAMVRDFQKIIGEEAKQQLQDW-YGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIR 547 (695)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhh
Confidence 3343 3378889999999999631 01 1599999999999999999999976 689999999999976555566666
Q ss_pred hHhhhCC
Q 021545 265 LLDGLNA 271 (311)
Q Consensus 265 ~~~g~~~ 271 (311)
+.++.|.
T Consensus 548 ~~~g~g~ 554 (695)
T PRK13802 548 FAPGTGE 554 (695)
T ss_pred hhhccCC
Confidence 6655443
No 73
>PLN02618 tryptophan synthase, beta chain
Probab=99.97 E-value=4.5e-30 Score=249.15 Aligned_cols=199 Identities=18% Similarity=0.108 Sum_probs=148.9
Q ss_pred ccccCC-CCCCccccCCCCCCC------------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHH
Q 021545 39 VFSLGH-FPTPIHKWNLPNLPH------------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHC 105 (311)
Q Consensus 39 ~~~~~~-~~TPL~~~~~~~Ls~------------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg 105 (311)
+++... .||||++ +++|++ |+||||+|+ +||+|+|.+...+..|++.|.++||+. +++||||
T Consensus 58 ~l~~~vGr~TPL~~--~~~Ls~~~g~~~~~g~~IylK~E~lnp--tGS~K~R~a~~~~l~A~~~g~~~vIae-sgaGNhG 132 (410)
T PLN02618 58 ILKDYVGRETPLYF--AERLTEHYKRADGEGPEIYLKREDLNH--TGAHKINNAVAQALLAKRLGKKRIIAE-TGAGQHG 132 (410)
T ss_pred HHHHhcCCCCceeE--hhhHHHHhccccCCCCEEEEEeCCCCC--ccchHHHHHHHHHHHHHHcCCCEEEEE-cCcHHHH
Confidence 344455 4999999 666642 789999998 799999999888888888998888864 3469999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc--cccccCcHHHHHHHHHHHHHcCCCcEE
Q 021545 106 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE--EYSKIGSVTLTNILKEKLLKEGRRPYV 183 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~--~~~~~~~~~~~~~~~~~l~~~g~~~y~ 183 (311)
+|+|++|+.+|++|+||||+.... . ...|+.+|++|||+|+.|+.+ .++ +.+.++.+++.++.++.++
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~-~----~~~nv~~mr~lGA~Vi~v~~g~~~~~-----dA~~ea~~~~~~~~~~~~y 202 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDME-R----QALNVFRMRLLGAEVRPVHSGTATLK-----DATSEAIRDWVTNVETTHY 202 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchh-h----hhhhHHHHHHCCCEEEEEeCCCCCHH-----HHHHHHHHHHHhccCCCEE
Confidence 999999999999999999985321 0 146899999999999999542 232 2222333445444233444
Q ss_pred ecCC--CCch---hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCC
Q 021545 184 IPVG--GSNS---IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 184 ip~g--~~n~---~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~ 254 (311)
+..+ +.+| ...+++.+++.||.+|+.+. .+..||+||+|+|+||+++|++.+|+. ++++|||||+++|.
T Consensus 203 i~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~-~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~ 276 (410)
T PLN02618 203 ILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEK-WGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGF 276 (410)
T ss_pred EecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCC
Confidence 4322 1233 23477789999999997331 124699999999999999999999975 79999999999996
No 74
>PLN02569 threonine synthase
Probab=99.97 E-value=9.7e-30 Score=251.97 Aligned_cols=227 Identities=14% Similarity=0.064 Sum_probs=172.5
Q ss_pred ccccCCCCCCccccCCCCCC-------C-CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC-----CEEEEeCCccchHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLP-------H-NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHC 105 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls-------~-~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~-----~~vVt~g~s~GNhg 105 (311)
.+.+++++|||.+ +++|+ + |+|.|.+++ +||||||++..++..+.+.|. ..||+ +|+||||
T Consensus 126 ~vsl~eG~TPLv~--~~~l~~~~~G~~~l~~K~E~~nP--TGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~--ASSGN~G 199 (484)
T PLN02569 126 IVSLFEGNSNLFW--AERLGKEFLGMNDLWVKHCGISH--TGSFKDLGMTVLVSQVNRLRKMAKPVVGVGC--ASTGDTS 199 (484)
T ss_pred ceecCCCCCceeE--hhhhhHhhcCCccEEEEECCCCC--CcCHHHHHHHHHHHHHHHhhhccCCccEEEE--eCCcHHH
Confidence 3789999999999 55543 2 678888886 899999999999999888665 45664 5789999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEec
Q 021545 106 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIP 185 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip 185 (311)
+|+|++|+.+|++|+||||+.... ..|+.+++.+||+|+.++. .|++ . .++++++.++. ..|+++
T Consensus 200 aAlAayaa~~Gl~~~I~vP~~~~~-------~~k~~qi~a~GA~Vi~v~g-~~d~-----a-~~~a~e~~~~~-~~~~~n 264 (484)
T PLN02569 200 AALSAYCAAAGIPSIVFLPADKIS-------IAQLVQPIANGALVLSIDT-DFDG-----C-MRLIREVTAEL-PIYLAN 264 (484)
T ss_pred HHHHHHHHhcCCeEEEEEcCCCCC-------HHHHHHHHhcCCEEEEECC-CHHH-----H-HHHHHHHHHHc-CCEecC
Confidence 999999999999999999986321 3689999999999999986 4654 2 22334444432 245554
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC------CCCCeEEEEeccCCchhhH
Q 021545 186 VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG------TLKAKVHAFSVCDDPDYFY 259 (311)
Q Consensus 186 ~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~------~~~~rVigV~~~g~~~~~~ 259 (311)
+. |+..++||.|++.||++|++. ..||+||+|+|+||+++|++.+|+++ .+.+|||+|++++......
T Consensus 265 -~~-Np~~ieG~kT~a~EI~eQl~~----~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~ 338 (484)
T PLN02569 265 -SL-NSLRLEGQKTAAIEILQQFDW----EVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYR 338 (484)
T ss_pred -CC-CcchhHhHHHHHHHHHHHcCC----CCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHH
Confidence 33 999999999999999999851 24999999999999999999999975 3457999999999754331
Q ss_pred H------------HHHHhHhhhCCCCC-------------CCCeEEeccCCccchHHH
Q 021545 260 D------------YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKN 292 (311)
Q Consensus 260 ~------------~i~~~~~g~~~~~~-------------~~dvv~v~e~~~~~~~~~ 292 (311)
. ...+++++++.... .+.++.|+|.++...+..
T Consensus 339 a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~ 396 (484)
T PLN02569 339 AYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE 396 (484)
T ss_pred HHHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH
Confidence 1 01234455554211 233689999888887766
No 75
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.97 E-value=1.8e-29 Score=246.74 Aligned_cols=201 Identities=16% Similarity=0.096 Sum_probs=150.9
Q ss_pred CCCCCCccccCCCCCCC--------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLPH--------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~--------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
...||||++ +++|+. |+|+|++++ +||||+|++..++..+.++|++++|+. +++||||+|+|++|+.
T Consensus 74 ~~~~TPL~~--~~~L~~~lg~~~~Iy~K~E~~nP--tGS~K~R~A~~~a~~a~~~G~~~~vte-tgsGN~G~alA~aaa~ 148 (427)
T PRK12391 74 LWRPTPLIR--ARRLEKALGTPAKIYYKYEGVSP--TGSHKPNTAVAQAYYNKKEGIKRLTTE-TGAGQWGSALALACAL 148 (427)
T ss_pred ccCCCCeeE--chhhHhhhCCCceEEEEEcCCCC--CCChHHHHHHHHHHHHHHCCCCEEEEc-cCchHHHHHHHHHHHH
Confidence 447999999 666642 789999987 799999999999999999999888874 3569999999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCc-------------HHHHHHHHHHHHHcCCCc
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS-------------VTLTNILKEKLLKEGRRP 181 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~-------------~~~~~~~~~~l~~~g~~~ 181 (311)
+|++|+||||.....++ ..+..+|++|||+|+.++.. +++.+. ...+..+.+..+++++..
T Consensus 149 ~Gl~~~V~mp~~s~~~k-----~~r~~~mr~~GA~Vi~~~~~-~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~ 222 (427)
T PRK12391 149 FGLECTVFMVRVSYEQK-----PYRRSLMETYGAEVIPSPSD-LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTK 222 (427)
T ss_pred cCCcEEEEEecCCcccC-----HHHHHHHHHCCCEEEEECCc-hhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcE
Confidence 99999999997442211 34788999999999998753 332111 012334444443333334
Q ss_pred EEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHH---hhCC-CCCeEEEEeccCCchh
Q 021545 182 YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS---WLGT-LKAKVHAFSVCDDPDY 257 (311)
Q Consensus 182 y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~---~~~~-~~~rVigV~~~g~~~~ 257 (311)
|+++.. .| ....||.+++.||.+|+... +..||+||+|+|+||+++|++.++ +..+ +++|||||++.+.+..
T Consensus 223 y~~~s~-~~-~~~~~~~~ig~Ei~~Ql~~~--g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l 298 (427)
T PRK12391 223 YALGSV-LN-HVLLHQTVIGLEAKKQLELA--GEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTL 298 (427)
T ss_pred EEcCCC-Cc-HHHhhHHHHHHHHHHHHHhc--CCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhh
Confidence 555433 22 23467889999999999732 346999999999999999999977 3346 8899999999998764
Q ss_pred h
Q 021545 258 F 258 (311)
Q Consensus 258 ~ 258 (311)
.
T Consensus 299 ~ 299 (427)
T PRK12391 299 T 299 (427)
T ss_pred c
Confidence 3
No 76
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=2.4e-29 Score=255.95 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=149.6
Q ss_pred ccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHH
Q 021545 41 SLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
.+...||||++ +++|++ |+||||+|+ +||+|+|.+...+..|.+.|.+++|+. +++||||+|+|++|+.
T Consensus 266 ~~~grpTPL~~--~~~Ls~~~G~~IylK~E~lnp--tGS~K~r~al~~~~~a~~~g~~~vi~e-~gsGnhG~A~A~~aa~ 340 (610)
T PRK13803 266 NYAGRPTPLTE--AKRLSDIYGARIYLKREDLNH--TGSHKINNALGQALLAKRMGKTRIIAE-TGAGQHGVATATACAL 340 (610)
T ss_pred HhCCCCCccee--HHHHHHhhCCEEEEEeCCCCC--cccHHHHHHHHHHHHHHHcCCCEEEEe-cChHHHHHHHHHHHHH
Confidence 34557999999 677754 799999998 799999999998888889998888753 3469999999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCc-EEecCC-CCc--
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRP-YVIPVG-GSN-- 190 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~-y~ip~g-~~n-- 190 (311)
+|++|+||||...... ...|+.+|+++||+|+.++.+. + ...+.+.++.+.+..+.++. |+++.. +.+
T Consensus 341 ~Gl~~~I~m~~~~~~~-----~~~nv~~m~~~GA~Vi~v~~~~-~--~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~ 412 (610)
T PRK13803 341 FGLKCTIFMGEEDIKR-----QALNVERMKLLGANVIPVLSGS-K--TLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPY 412 (610)
T ss_pred cCCcEEEEEeCCcccc-----hhhHHHHHHHCCCEEEEECCCC-C--CHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCc
Confidence 9999999999764211 1468999999999999998531 1 11122233344442322334 444321 123
Q ss_pred hhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCC
Q 021545 191 SIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 191 ~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~ 254 (311)
+..+ .|+.+++.||.+|+.+. .+..||+||+|+||||+++|++.+|++ ++++||||||+.|.
T Consensus 413 p~~v~~~~~tig~Ei~~Q~~~~-~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~ 475 (610)
T PRK13803 413 PEMVAYFQSVIGEEAKEQLKEQ-TGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGK 475 (610)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-hCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCC
Confidence 3333 47889999999999531 124699999999999999999999964 78999999999986
No 77
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=241.17 Aligned_cols=225 Identities=19% Similarity=0.128 Sum_probs=174.7
Q ss_pred cccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC-----CEEEEeCCccchHHHHH
Q 021545 40 FSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA-----DCIITIGGIQSNHCRAA 108 (311)
Q Consensus 40 ~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~-----~~vVt~g~s~GNhg~Al 108 (311)
....+++|||+. ++...+ ++|.|-+++ .||.|+|-+..|+.+|+.+|. .+|| .+++||+|.++
T Consensus 46 ~~~liG~TPlv~--ln~i~~g~~~~i~~K~E~~~p--~~SvKdRia~sMi~~Ae~~G~i~pg~stli--EpTSGNtGigL 119 (362)
T KOG1252|consen 46 VRDLIGNTPLVK--LNKIAGGCVARIAAKLEYMNP--GGSVKDRIAWSMIEDAEKKGLITPGKSTLI--EPTSGNTGIGL 119 (362)
T ss_pred HHHHhCCCceEE--eccccCCccceEEEEeeecCC--cccHHHHHHHHHHHHHHHcCCccCCceEEE--ecCCCchHHHH
Confidence 345679999999 566655 467888877 799999999999999999984 3444 57899999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCcc-ccccCcHHHHHHHHHHHHHcCCCcEEecCC
Q 021545 109 AVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEE-YSKIGSVTLTNILKEKLLKEGRRPYVIPVG 187 (311)
Q Consensus 109 A~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~-~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g 187 (311)
|+.|+..|++|+++||+..+ .++...+++|||+|++++... +. ..+..-..++++..+.++.| +.+|
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms--------~Ek~~~l~a~Gaeii~tp~a~~~~---~~e~ai~~a~~l~~~~pna~-~l~Q 187 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMS--------KEKRILLRALGAEIILTPPAAGMK---GPESAIGKAEELLNKTPNAY-ILDQ 187 (362)
T ss_pred HHHHHHcCceEEEEechhhh--------HHHHHHHHHcCCEEEecChHHccC---ChHHHHHHHHHHHHhCCChH-HHHH
Confidence 99999999999999999885 468999999999999998632 22 12333445667777777776 5566
Q ss_pred CCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHH---H
Q 021545 188 GSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYT---Q 263 (311)
Q Consensus 188 ~~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i---~ 263 (311)
+.|+.+. .+|.++++||++|+. +.+|.+|.++|||||++|+.+++++.+++++|++||+.++..+-...- .
T Consensus 188 f~np~Np~~hy~ttg~EI~~q~~-----g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~ 262 (362)
T KOG1252|consen 188 FHNPGNPLAHYETTGPEIWRQLD-----GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTF 262 (362)
T ss_pred hcCCCCcccccccccHHHHHHhc-----CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCc
Confidence 6665543 679999999999995 689999999999999999999999999999999999999875432211 1
Q ss_pred HhHhhhCCCC--------CCCCeEEeccCCcc
Q 021545 264 GLLDGLNAGV--------DSRDIVNIQNVSVY 287 (311)
Q Consensus 264 ~~~~g~~~~~--------~~~dvv~v~e~~~~ 287 (311)
..+.|+|.++ .+|+++.+++..-+
T Consensus 263 ~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A~ 294 (362)
T KOG1252|consen 263 HKIQGIGYGFIPTTLDTKLVDEVLKVSSDEAI 294 (362)
T ss_pred cceeccccCcCccccchHHHHHHHHhCCHHHH
Confidence 3566777642 24555555554433
No 78
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.95 E-value=7.4e-27 Score=226.85 Aligned_cols=226 Identities=13% Similarity=0.019 Sum_probs=165.8
Q ss_pred ccCCCCCCccccCCCCCCC-------CC-------CCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHH
Q 021545 41 SLGHFPTPIHKWNLPNLPH-------NT-------ERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCR 106 (311)
Q Consensus 41 ~~~~~~TPL~~~~~~~Ls~-------~v-------KRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~ 106 (311)
.+..+.|||.+ .+.|++ |+ |+|++|+ +||||+|++.+++..+.+.|.+.||+ +|+||||+
T Consensus 57 ~~~~g~tpl~~--~~~L~~~lG~~~v~~K~e~~~~K~E~~np--TGSFKdRga~~~i~~a~~~g~~~Vv~--aSsGN~g~ 130 (398)
T TIGR03844 57 LRTRGGPVTYK--SEGLARELGLSDLYITFSGYWPERGAFMR--TCSFKELEALPTMQRLKERGGKTLVV--ASAGNTGR 130 (398)
T ss_pred CCCCCCCceee--hHHHHHHhCCCeEEEEecCcccchhccCC--ccccHHHHHHHHHHHHHHcCCCEEEE--ECCCHHHH
Confidence 34556789887 454432 44 7888887 79999999999999999999888886 47899999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecC
Q 021545 107 AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPV 186 (311)
Q Consensus 107 AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~ 186 (311)
|+|++|+++|++|+||||...+. . +...++.+||+|+.++. .|++ . .+.++++.++. . ++.+.
T Consensus 131 alA~~aa~~Gi~~~I~vP~~~~~-------~-~~~~~~~~ga~vv~v~g-~~d~-----a-~~~a~~~a~~~-g-~~~~~ 193 (398)
T TIGR03844 131 AFAEVSAITGQPVILVVPKSSAD-------R-LWTTEPASSVLLVTVDG-DYTD-----A-IALADRIATLP-G-FVPEG 193 (398)
T ss_pred HHHHHHHHcCCcEEEEECCChHH-------H-HHHHhhCCcEEEEECCC-CHHH-----H-HHHHHHHHHhC-C-ccccC
Confidence 99999999999999999987531 1 22234789999999876 4654 2 22344444432 2 34455
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhC-------CCCCeEEEEeccCCchhhH
Q 021545 187 GGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLG-------TLKAKVHAFSVCDDPDYFY 259 (311)
Q Consensus 187 g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~-------~~~~rVigV~~~g~~~~~~ 259 (311)
+..|+...+|+.|++.||++|++ ..||+||+|+|+|+.+.|++.+++++ ..-.|+++|++++......
T Consensus 194 ~~~~p~~ieG~~Ti~~Ei~eql~-----~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~ 268 (398)
T TIGR03844 194 GARNVARRDGMGTVMLDAAVTIG-----SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVN 268 (398)
T ss_pred CCCCHHHHhhHHHHHHHHHHHcC-----CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHH
Confidence 55689999999999999999985 24899999999998899999988762 1336889999999765432
Q ss_pred HH-----H---------------HHhHhhhCC--C-------------CCCCCeEEeccCCccchHHHHH
Q 021545 260 DY-----T---------------QGLLDGLNA--G-------------VDSRDIVNIQNVSVYMTFKNIL 294 (311)
Q Consensus 260 ~~-----i---------------~~~~~g~~~--~-------------~~~~dvv~v~e~~~~~~~~~~~ 294 (311)
.. . +.+.+++.. + ...+++|.|+|.++...+..+.
T Consensus 269 a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~ 338 (398)
T TIGR03844 269 AWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFE 338 (398)
T ss_pred HHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH
Confidence 10 0 234444422 1 1246899999999888877654
No 79
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.8e-27 Score=213.83 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=170.4
Q ss_pred ccccCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCC---CEEEEeCCccchHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGA---DCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~---~~vVt~g~s~GNhg~AlA 109 (311)
-+...+++|||.+ +..|+. +.|.|-+++ .||.|||-+.++++.|++.|. ...|+ +|++||+|+++|
T Consensus 42 Gv~~~IGnTplir--i~sLs~aTGcnIlaK~Ef~NP--ggS~KDRvAl~iir~Aee~GkL~~gg~v~-EGtaGsTgIslA 116 (391)
T KOG1481|consen 42 GVEGAIGNTPLIR--INSLSNATGCNILAKAEFLNP--GGSVKDRVALYIIRTAEEKGKLVRGGTVV-EGTAGSTGISLA 116 (391)
T ss_pred hhHHhhCCCceEE--eeccccccccchhhhhhccCC--CCChhhhhHHHHHHHHHHcCCcccCceEE-ecCCCccchhHH
Confidence 4566789999999 677776 345666665 688999999999999999985 23443 468899999999
Q ss_pred HHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHH---HHHHHHHHHc--CCCcEEe
Q 021545 110 VAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLT---NILKEKLLKE--GRRPYVI 184 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~---~~~~~~l~~~--g~~~y~i 184 (311)
.+|+.+|++|+|+||++.+ .+|...++.+||+|..|+...+.+ ...+. ++.++++... +-+.| .
T Consensus 117 ~v~~a~Gyk~~I~mPddqs--------~eK~~ile~LGA~V~rV~pa~i~d--p~~yvn~Arr~an~~~~~~ngi~g~-f 185 (391)
T KOG1481|consen 117 HVARALGYKCHIYMPDDQS--------QEKSDILEFLGAEVHRVPPAPIVD--PNHYVNQARRAANETPNASNGIRGW-F 185 (391)
T ss_pred HhhhhcCcceEEECCChHH--------HHHHHHHHHhcceeeecCCcCccC--hhHHHHHHHHHhhhcccccCCcccc-h
Confidence 9999999999999999875 468999999999999997643321 11222 2233333322 11223 4
Q ss_pred cCCCCchhHH-HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCC-CeEEEEeccCCchhh----
Q 021545 185 PVGGSNSIGT-WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-AKVHAFSVCDDPDYF---- 258 (311)
Q Consensus 185 p~g~~n~~~~-~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~-~rVigV~~~g~~~~~---- 258 (311)
..|..|+.++ .+|.+++.||++|.. +.+|.+++++|||||++|+.+++++..+. +.+.-.+|-|+..|-
T Consensus 186 AdQFeN~AN~~aHyetTGPEIw~Qtk-----GniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~ 260 (391)
T KOG1481|consen 186 ADQFENVANWLAHYETTGPEIWHQTK-----GNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNY 260 (391)
T ss_pred hhhhcCHHHHHHHhcCcCcHHHHhhc-----CCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhh
Confidence 5677898887 558899999999986 68999999999999999999999987554 667777777774321
Q ss_pred --------------HHHHHHhHhhhCCC----------CCCCCeEEeccCCccc
Q 021545 259 --------------YDYTQGLLDGLNAG----------VDSRDIVNIQNVSVYM 288 (311)
Q Consensus 259 --------------~~~i~~~~~g~~~~----------~~~~dvv~v~e~~~~~ 288 (311)
+.+++++..|+|.. ..+||-.+|.|.+-..
T Consensus 261 GVmy~~~e~eG~r~r~q~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~ 314 (391)
T KOG1481|consen 261 GVMYDHIETEGTRRRNQVDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAIN 314 (391)
T ss_pred hhhhhhhhhcCcccCCCcchhhhcccccccccccccchhhhhhheecChHHHHH
Confidence 34566677777761 2267777777765443
No 80
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.86 E-value=2.2e-21 Score=178.49 Aligned_cols=209 Identities=19% Similarity=0.162 Sum_probs=153.1
Q ss_pred cCCCCCCccccCCCCCCC------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHc
Q 021545 42 LGHFPTPIHKWNLPNLPH------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL 115 (311)
Q Consensus 42 ~~~~~TPL~~~~~~~Ls~------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~ 115 (311)
.+-.||||.. ..+|++ |+|||||++ +|++|+-.+..-+--|++.|.++||..-| .|-||.|.|.+|+++
T Consensus 52 Y~GRptpLy~--a~~Lt~~~gakiyLKREDL~H--tGAHKiNN~lGQ~LLAkrMGK~riIAETG-AGQHGVAtAta~A~f 126 (396)
T COG0133 52 YAGRPTPLYF--AERLTEHLGAKIYLKREDLNH--TGAHKINNALGQALLAKRMGKTRIIAETG-AGQHGVATATAAALF 126 (396)
T ss_pred hCCCCChhHH--HHHHHHhhCceEEEehhhhcc--cchhhHHHHHHHHHHHHHhCCceEEeecC-CCcccHHHHHHHHHh
Confidence 5778999999 788877 789999999 79999988766666678899999985322 488999999999999
Q ss_pred CCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCC-cEEecC-CCCc--h
Q 021545 116 NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRR-PYVIPV-GGSN--S 191 (311)
Q Consensus 116 Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~-~y~ip~-g~~n--~ 191 (311)
|++|+|||-...-. + ..-|+.+|+++||+|+.|..+.- ...+.+.++.+.+..+-.+ .|++-. -+.+ |
T Consensus 127 gl~C~iYMGa~Dv~----R-Q~~NVfRM~LlGA~V~pV~sGs~---TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP 198 (396)
T COG0133 127 GLECVIYMGAEDVE----R-QALNVFRMRLLGAEVVPVTSGSG---TLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYP 198 (396)
T ss_pred CCceEEEecchhhh----h-cccchhhhhhcCceEEEeccCCc---hHHHHHHHHHHHHHhccccceEEEeeccCCCCch
Confidence 99999999654321 1 24589999999999999986531 1223334444444443223 344431 1333 3
Q ss_pred hHHHHHH-HHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHh
Q 021545 192 IGTWGYI-EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL 265 (311)
Q Consensus 192 ~~~~Gy~-t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~ 265 (311)
.-+.-+. -++.|..+|+.+.+ +..||+||.|+|+|+.+.|++..|-. .+++++|||++.|......++...+
T Consensus 199 ~iVRdFQ~vIG~E~k~Qile~e-grlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl 271 (396)
T COG0133 199 TIVRDFQSVIGEEAKAQILEKE-GRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATL 271 (396)
T ss_pred HHHHHHHHHHhHHHHHHHHHHh-CCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceee
Confidence 3444554 47899999976532 46799999999999999999999865 4789999999999876555444433
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.8e-20 Score=177.51 Aligned_cols=230 Identities=20% Similarity=0.196 Sum_probs=168.5
Q ss_pred ccccCCCCCCccccCCCCCCC---------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHH
Q 021545 39 VFSLGHFPTPIHKWNLPNLPH---------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAA 109 (311)
Q Consensus 39 ~~~~~~~~TPL~~~~~~~Ls~---------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA 109 (311)
...+..+.||+.+ .++++. |+|-|-++ | +|+||||.+..++..+.+.|..+|++ +|+||+|.++|
T Consensus 69 ~~~l~eg~tp~~~--~~~~~~~l~~~~~~lyvk~~~~n-P-T~SFKDrg~~~~~~~~~~~g~~~I~~--ASSGnTgAs~a 142 (411)
T COG0498 69 AVSLGEGGTPLYK--APALAAPLGVLNDNLYVKELGHN-P-TGSFKDRGMTVLVSLAKELGAKTILC--ASSGNTGASAA 142 (411)
T ss_pred hhhhhhccCcccc--CcccchhhccCCcceehhhhccC-C-CcchhhhhHHHHHHHHHHhcCCEEEE--eCCchHHHHHH
Confidence 4578889999997 444332 55555555 4 89999999999999999888655663 58899999999
Q ss_pred HHHHHcCCcEEEEEcCC-CcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCC
Q 021545 110 VAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGG 188 (311)
Q Consensus 110 ~~a~~~Gl~~~ivv~~~-~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~ 188 (311)
+++++.|++|+|++|.. .+ .+++.+|..+||+++.+.. .||++ .++++++.++. .++-..+.
T Consensus 143 aya~rag~~v~Vl~P~g~vs--------~~k~~q~~~~ga~~i~v~G-~fDda------~~~vk~~~~~~--~~~~~~ns 205 (411)
T COG0498 143 AYAARAGLKVFVLYPKGKVS--------PGKLAQMLTLGAHVIAVDG-NFDDA------QELVKEAANRE--GLLSAVNS 205 (411)
T ss_pred HHhccCCCeEEEEecCCCCC--------HHHHHHHHhcCCEEEEEcC-cHHHH------HHHHHHHHhhC--Cceeeccc
Confidence 99999999999999998 43 4689999999999999986 47642 33344444432 22334455
Q ss_pred CchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCC------CCeEEEEeccCCchhhHH--
Q 021545 189 SNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL------KAKVHAFSVCDDPDYFYD-- 260 (311)
Q Consensus 189 ~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~------~~rVigV~~~g~~~~~~~-- 260 (311)
.||....|.++++.|+++|+.. ..||+|+||+|+||.+.|++.++++.-+ -++..+|++++-....++
T Consensus 206 iNp~rlegq~t~~fe~~~ql~~----~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~ 281 (411)
T COG0498 206 INPYRLEGQKTYAFEIAEQLGW----KAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWK 281 (411)
T ss_pred cCHHHhhhhhhhHhHHHHHhCC----CCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcc
Confidence 7899999999999999999962 5799999999999999999999998533 346677888774432222
Q ss_pred ----HHHHhHhhhCCCCC-------------CCCeEEeccCCccchHHHHHH
Q 021545 261 ----YTQGLLDGLNAGVD-------------SRDIVNIQNVSVYMTFKNILM 295 (311)
Q Consensus 261 ----~i~~~~~g~~~~~~-------------~~dvv~v~e~~~~~~~~~~~~ 295 (311)
...++.+.+....+ -.-.+.|+|.++..++..+-.
T Consensus 282 ~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~ 333 (411)
T COG0498 282 EGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAE 333 (411)
T ss_pred cccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHH
Confidence 22334444443211 123777777777777665543
No 82
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.74 E-value=3.2e-18 Score=159.27 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=141.2
Q ss_pred cCCCCCCccccCCCCCCC--------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHH
Q 021545 42 LGHFPTPIHKWNLPNLPH--------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAK 113 (311)
Q Consensus 42 ~~~~~TPL~~~~~~~Ls~--------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~ 113 (311)
..-.||||++ .++|.+ |+||||+++ .||+|.-.+..-.--|.+.|.++||+.-| .|-||.|+|.+|+
T Consensus 118 y~gRpspL~~--AkRLte~~q~ga~IylKrEdlnh--~GsHKiNnav~QallakrlGkknviaETG-AGQhGvatA~a~a 192 (477)
T KOG1395|consen 118 YLGRPSPLIR--AKRLTEHCQTGARIYLKREDLNH--TGSHKINNAVAQALLAKRLGKKNVIAETG-AGQHGVATATACA 192 (477)
T ss_pred HcCCCchhHH--HHHHHHHhCCCCEEEEEecCCCc--cccCCcccHHHHHHHHHHhcccceeeccC-CCccchHHHHHHH
Confidence 5668999998 777765 789999999 79999988765555567889999996433 4889999999999
Q ss_pred HcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccc--cccCcHHHHHHHHHHHHHcCCCcEEec-CCCCc
Q 021545 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEY--SKIGSVTLTNILKEKLLKEGRRPYVIP-VGGSN 190 (311)
Q Consensus 114 ~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~--~~~~~~~~~~~~~~~l~~~g~~~y~ip-~g~~n 190 (311)
++|++|+++|--..-. ...-|+.+||.+||+|+.+..+.- ++. ..+........++.. .|++- ..+..
T Consensus 193 ~FGl~C~v~mgAed~~-----rqalnvfrmrllGAkV~pv~sGt~tLrda-~sea~r~wvt~~ett---~y~~gs~~gph 263 (477)
T KOG1395|consen 193 KFGLDCTVYMGAEDYR-----RQALNVFRMRLLGAKVHPVTSGTRTLRDA-TSEAGRLWVTNSETT---HYAAGSAIGPH 263 (477)
T ss_pred HhCCceEEEechhHHH-----HHHHHHHHHHHhCceEeecCCCceehhcc-cchhhhhhhhhhhee---eeeecccCCCC
Confidence 9999999999554321 124689999999999999976421 111 111112222222221 12221 11222
Q ss_pred hhH--HHH-HHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHH
Q 021545 191 SIG--TWG-YIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDY 261 (311)
Q Consensus 191 ~~~--~~G-y~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~ 261 (311)
|.. +.= +.+++.|-..|..+ .++..||.||.++|+|...+|++.-|.. ...++.+||+..|.+.....+
T Consensus 264 p~pt~vr~fhsvIg~Et~~Q~me-~~g~~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~h 335 (477)
T KOG1395|consen 264 PYPTVVRTFHSVIGKETKIQQME-KFGKLPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKH 335 (477)
T ss_pred CcHHHHHHHHHHHhHHHHHHHHH-HhCCCCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcch
Confidence 222 111 34677887776654 2457899999999999999999998875 467889999999987654433
No 83
>PRK09225 threonine synthase; Validated
Probab=99.58 E-value=6.6e-14 Score=138.38 Aligned_cols=179 Identities=13% Similarity=0.014 Sum_probs=124.4
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCchhHHhHHH---HHHHHHHcCCCEEEEeCCccchHHHHH-HHHHHHcCCcEEE
Q 021545 46 PTPIHKWNLPNLPHNTERDDLSGMQLSGNKVRKLEF---LMADAVAQGADCIITIGGIQSNHCRAA-AVAAKYLNLDCYL 121 (311)
Q Consensus 46 ~TPL~~~~~~~Ls~~vKRedl~~~~~ggnK~Rkl~~---ll~~a~~~G~~~vVt~g~s~GNhg~Al-A~~a~~~Gl~~~i 121 (311)
.+||.+ +.. ..|+.-..+ +| +++||||.+.. ++..+++.+..+|++ +|+||+|.|+ |+++.+.|++|+|
T Consensus 88 ~~pl~~--l~~-~~~~lELfh-GP-T~sFKD~a~~~l~~~l~~a~~~~~~~Il~--ATSGdtG~Aa~aaf~~~~gi~~~V 160 (462)
T PRK09225 88 IAPLVQ--LDD-NLYVLELFH-GP-TLAFKDFALQFLAQLLEYVLKGEKITILG--ATSGDTGSAAAEAFRGKPNVRVVI 160 (462)
T ss_pred ccceEE--eCC-CceeHhhcc-CC-ccchhhhHHHHHHHHHHHHHhCCCcEEEE--cCCCcHHHHHHHHHhCcCCCEEEE
Confidence 477777 321 014422222 34 89999999988 788887733555663 5889999998 7999999999999
Q ss_pred EEcCC-CcccCCCCCccchHHHHHHC-CCEE--EEEcCccccccCcHHHHHHHHHHHHHc----CCCcEEecCCCCchhH
Q 021545 122 ILRTS-KVLVDQDPGLIGNLLVERLV-GAHI--ELISKEEYSKIGSVTLTNILKEKLLKE----GRRPYVIPVGGSNSIG 193 (311)
Q Consensus 122 vv~~~-~~~~~~~~~~~~n~~~~~~~-GAeV--~~v~~~~~~~~~~~~~~~~~~~~l~~~----g~~~y~ip~g~~n~~~ 193 (311)
++|+. .+. .+.++|..+ |++| +.|+. .||+. +.+.+++... .... +...+..|+..
T Consensus 161 ~~P~g~vs~--------~q~~Qm~t~~g~nv~vi~V~G-~fDD~------q~~vk~~~~d~~~~~~~~-l~saNSiN~~R 224 (462)
T PRK09225 161 LYPKGKVSP--------VQEKQMTTLQGDNIHVVAVEG-NFDDC------QALVKAAFNDEELKEKLK-LSSANSINIGR 224 (462)
T ss_pred EEcCCCCCH--------HHHHHHHhhcCCCeEEEEeCC-CHHHH------HHHHHHHhhchhhhhcCc-eEEEeccCHHH
Confidence 99986 542 457788888 9976 66665 47653 2222232211 0011 22223358888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCC-eEEEEe
Q 021545 194 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFS 250 (311)
Q Consensus 194 ~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~-rVigV~ 250 (311)
+.|+.+.+.|+++|+... .+.+|.|+||+|.||.+.|.+.+ +.+|..+ |+|+++
T Consensus 225 i~gQ~~yyfea~~ql~~~--~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~ 279 (462)
T PRK09225 225 LLAQIVYYFYAYLQLGIE--AGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT 279 (462)
T ss_pred HHHHHHHHHHHHHHhccc--cCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe
Confidence 999999999999999520 13489999999999999999999 5556544 888876
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.55 E-value=4.6e-14 Score=130.76 Aligned_cols=199 Identities=20% Similarity=0.143 Sum_probs=136.9
Q ss_pred CCCCCCccccCCCCCCC--------CCCCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHH
Q 021545 43 GHFPTPIHKWNLPNLPH--------NTERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKY 114 (311)
Q Consensus 43 ~~~~TPL~~~~~~~Ls~--------~vKRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~ 114 (311)
...||||.+ ..+|.+ |.|.|..++ +||+|.-.+..-.--+..+|+..|+|--| .|-+|.|++.+|+.
T Consensus 75 ~gRPTPL~R--A~~LE~~L~tparIYyK~Eg~tp--tGSHKiNTAlAqaYyak~eg~~rl~TETG-AGQWGsAlslA~al 149 (432)
T COG1350 75 IGRPTPLIR--AKNLEEALGTPARIYYKYEGVTP--TGSHKINTALAQAYYAKKEGAKRLTTETG-AGQWGSALSLAAAL 149 (432)
T ss_pred hCCCCchhh--hhhHHHHhCCCcEEEEEecccCC--CCCCCcchHHHHHHHHHhcCceeeecccC-CchHHHHHHHHHHH
Confidence 337999999 777654 677999987 69999998854444467889999997533 48899999999999
Q ss_pred cCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCc---------H----HHHHHHHHHHHHcCCCc
Q 021545 115 LNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGS---------V----TLTNILKEKLLKEGRRP 181 (311)
Q Consensus 115 ~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~---------~----~~~~~~~~~l~~~g~~~ 181 (311)
+|++|++||-...=.++ .-...+|+++||+|+.-+.+ .-+.++ . -++.++.+...+++ +.
T Consensus 150 f~lk~~V~Mvr~Sy~qK-----pyRk~lM~~yGa~V~pSPS~-~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~-~~ 222 (432)
T COG1350 150 FGLKATVFMVRVSYYQK-----PYRKYLMELYGAEVVPSPSE-LTEFGRKILKEDPDHPGSLGIAISEAIEYALKNE-NT 222 (432)
T ss_pred hCceeEEEEEehhhhcc-----hHHHHHHHHhCCeecCCCcc-hhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCC-Cc
Confidence 99999999965432222 23467899999999876542 111110 0 12233344333433 33
Q ss_pred EEecCCCCchhH-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHh---hCCC-CCeEEEEeccCCch
Q 021545 182 YVIPVGGSNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSW---LGTL-KAKVHAFSVCDDPD 256 (311)
Q Consensus 182 y~ip~g~~n~~~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~---~~~~-~~rVigV~~~g~~~ 256 (311)
.+.+ ||-... ..+..-++.|..+|+... +..||+++-+||+|..++|+..-|- +.+. .+|+|+|++...+.
T Consensus 223 kY~l--GSVlnhvllhQTViGlEakkQle~~--~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~ 298 (432)
T COG1350 223 KYSL--GSVLNHVLLHQTVIGLEAKKQLEQA--GEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPK 298 (432)
T ss_pred eecc--hhHHHHHHHHHHHHhHHHHHHHHhc--CCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCc
Confidence 3332 222111 233344899998898753 4679999999999999999987663 3333 38999999988765
Q ss_pred h
Q 021545 257 Y 257 (311)
Q Consensus 257 ~ 257 (311)
.
T Consensus 299 l 299 (432)
T COG1350 299 L 299 (432)
T ss_pred c
Confidence 3
No 85
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.54 E-value=2.4e-13 Score=134.41 Aligned_cols=183 Identities=15% Similarity=0.045 Sum_probs=125.5
Q ss_pred CCCccccCCC-CCCCCCCCCCCCCCCCCchhHHhHHHH---HHHHHHc--CCCEEEEeCCccchHHHH-HHHHHHHcCCc
Q 021545 46 PTPIHKWNLP-NLPHNTERDDLSGMQLSGNKVRKLEFL---MADAVAQ--GADCIITIGGIQSNHCRA-AAVAAKYLNLD 118 (311)
Q Consensus 46 ~TPL~~~~~~-~Ls~~vKRedl~~~~~ggnK~Rkl~~l---l~~a~~~--G~~~vVt~g~s~GNhg~A-lA~~a~~~Gl~ 118 (311)
.+||.+ +. ++ |+.-+.+ +| +++||||.+..+ +..++++ +..+|++ +|+||+|.| +|+++.+.|++
T Consensus 87 ~~pl~~--l~~~~--~~lELfh-GP-T~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~--ATSGdTG~Aa~aaf~~~~gi~ 158 (460)
T cd01560 87 IAPLVQ--LGDNL--YVLELFH-GP-TLAFKDMALQFLGRLLEYFLKRRNERITILV--ATSGDTGSAAIEGFRGKPNVD 158 (460)
T ss_pred ccceEE--eCCCc--EEeeeee-CC-CcchHHhHHHHHHHHHHHHHHhcCCCeEEEE--cCCCcHHHHHHHHHhCcCCCE
Confidence 367766 32 11 4433333 34 899999999865 6767655 5566664 688999999 58999999999
Q ss_pred EEEEEcCC-CcccCCCCCccchHHHHHHCCC---EEEEEcCccccccCcHHHHHHHHHHHHHcC---CCcEEecCCCCch
Q 021545 119 CYLILRTS-KVLVDQDPGLIGNLLVERLVGA---HIELISKEEYSKIGSVTLTNILKEKLLKEG---RRPYVIPVGGSNS 191 (311)
Q Consensus 119 ~~ivv~~~-~~~~~~~~~~~~n~~~~~~~GA---eV~~v~~~~~~~~~~~~~~~~~~~~l~~~g---~~~y~ip~g~~n~ 191 (311)
|+|++|.+ .+. .+..+|..+|+ +++.|+. .||++ +.+.+++.+.. .+.-+...+..|+
T Consensus 159 v~Vl~P~g~vs~--------~Q~~Qm~t~g~~Nv~vi~V~G-~fDd~------q~~vk~~~~d~~~~~~~~l~saNSiN~ 223 (460)
T cd01560 159 VVVLYPKGGVSP--------IQELQMTTLPADNVHVVAVEG-DFDDC------QSLVKALFADEDFNKKLKLSSANSINW 223 (460)
T ss_pred EEEEEcCCCCCH--------HHHHHHHhhCCCceEEEEEcC-CHHHH------HHHHHHHhcChhhHhcceEEEEeccCH
Confidence 99999986 542 46788999997 7888876 47653 22222322110 0111222333588
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCC-CeEEEEeccC
Q 021545 192 IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLK-AKVHAFSVCD 253 (311)
Q Consensus 192 ~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~-~rVigV~~~g 253 (311)
..+.|..+.+.|+++|+.... .+.+|.|+||+|.||.+.|.+.+.+ +|.+ .|+|+..-+.
T Consensus 224 ~Ri~~Q~~yyf~a~~ql~~~~-~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~n~n 284 (460)
T cd01560 224 ARILAQIVYYFYAYLQLLKRG-EGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVATNEN 284 (460)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEeCCC
Confidence 889999999999999985310 1268999999999999999999965 4544 4788854433
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.10 E-value=7.7e-10 Score=102.16 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=146.9
Q ss_pred CCCCccccccCCCCCCccccCCCCC------------CC--CCCCCCCCCCCCCchhHHhHHH-HHHHH----HHcCCC-
Q 021545 33 APIPSHVFSLGHFPTPIHKWNLPNL------------PH--NTERDDLSGMQLSGNKVRKLEF-LMADA----VAQGAD- 92 (311)
Q Consensus 33 ~~~p~~~~~~~~~~TPL~~~~~~~L------------s~--~vKRedl~~~~~ggnK~Rkl~~-ll~~a----~~~G~~- 92 (311)
+.||...-..++..+||.++ +.+ .. ++|+|...+. .||.|.|+--| .+.+| ++.|.-
T Consensus 65 k~FPeT~~~~GiIES~lv~i--~~mq~~Le~~Y~~~i~G~llLK~DshLpI-sGSIKARGGIYEVL~hAE~LAle~Gll~ 141 (443)
T COG3048 65 KAFPETAATGGIIESPLVEI--PAMQKRLEKEYQQPIPGRLLLKKDSHLPI-SGSIKARGGIYEVLKHAEKLALEAGLLT 141 (443)
T ss_pred HhCccccccCCeeccchhhh--HHHHHHHHHHhcCCCCcceeeeccCCCCc-ccceeccccHHHHHHHHHHHHHhcCccc
Confidence 45777667778888999873 221 11 5789988874 68899998544 34443 445531
Q ss_pred -------------------EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 93 -------------------CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 93 -------------------~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
.=|..| |.||.|.++-...+.+|+++++-|.-..- +.|...+|..|..|+..
T Consensus 142 ~~DDYs~L~~~~f~~FFs~ysIaVG-STGNLGlSIGI~sA~lGF~vtVHMSADAr--------~WKKd~LRs~gV~ViEY 212 (443)
T COG3048 142 LEDDYSILLSEEFKDFFSRYSIAVG-STGNLGLSIGIMSAALGFKVTVHMSADAR--------AWKKDKLRSHGVTVVEY 212 (443)
T ss_pred ccchHHHhhcHHHHHHHHhheEeec-ccCccceehhhhhhhhcceEEEEecchHH--------HHHHHHHHhcCceEEEe
Confidence 124444 67999999999999999999999977652 46888999999999988
Q ss_pred cCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc-hhHHHHHHHHHHHHHHHHhcCC---CCCCCCeEEEeCCcchh
Q 021545 154 SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN-SIGTWGYIEAIKEIEQQLQTGT---GGVKFDDIVVACGSGGT 229 (311)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n-~~~~~Gy~t~a~EI~~Q~~~~~---~~~~~D~ivv~vGtGGt 229 (311)
+. +|.. .+++=. +-+++++..|||-. .| ..-..||...+.-|..|+.+++ ....|=.|.+|||-||.
T Consensus 213 e~-DY~~-----AVeeGR-k~a~~DP~c~FiDD--E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGg 283 (443)
T COG3048 213 EQ-DYGV-----AVEEGR-KEAESDPNCFFIDD--ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGG 283 (443)
T ss_pred cc-hhhH-----HHHHhh-hhhccCCceEEecc--cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCC
Confidence 76 3642 222222 22344677888853 33 3345899999999999997531 01234578999999999
Q ss_pred HHHHHHHHhhC-CCCCeEEEEeccCCchhh
Q 021545 230 IAGLSLGSWLG-TLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 230 ~aGl~~~~~~~-~~~~rVigV~~~g~~~~~ 258 (311)
-.|++-++|.. +.++.+.-+++..+|-++
T Consensus 284 PGGVafGLKl~fgd~VhcfFaEPthsPcMl 313 (443)
T COG3048 284 PGGVAFGLKLAFGDHVHCFFAEPTHSPCML 313 (443)
T ss_pred cchhhhhhHhhhcCceEEEEecCCCChHHH
Confidence 99999999874 678889999999988654
No 87
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=94.10 E-value=5.2 Score=38.09 Aligned_cols=159 Identities=15% Similarity=0.122 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCC-C-----ccchH---HHHHHCC---
Q 021545 80 EFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP-G-----LIGNL---LVERLVG--- 147 (311)
Q Consensus 80 ~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~-~-----~~~n~---~~~~~~G--- 147 (311)
..+++.+++++++.|+.. ....+........|+..|++++.+-....+...... . ..|.. .+.+.+|
T Consensus 70 ~~~i~~li~~~vdgIiv~-~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~~g~ 148 (336)
T PRK15408 70 VQLINNFVNQGYNAIIVS-AVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVGKDK 148 (336)
T ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcCCCC
Confidence 356888889999988864 344555556667788899999887544211000000 0 01221 2333444
Q ss_pred CEEEEEcC-ccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc
Q 021545 148 AHIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 226 (311)
Q Consensus 148 AeV~~v~~-~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt 226 (311)
.+|..+.. .... ...++.+...+.+.+..+..-++...+.+.....++ ..+.++++.- .++|.||++ +
T Consensus 149 gki~il~g~~~~~--~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~~~a~-~~~~~lL~~~------pdi~aI~~~--~ 217 (336)
T PRK15408 149 AKVAFFYSSPTVT--DQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSL-QTAEGILKAY------PDLDAIIAP--D 217 (336)
T ss_pred CEEEEEECCCCCc--cHHHHHHHHHHHHHhhCCCCEEEeecCCCCcHHHHH-HHHHHHHHHC------CCCcEEEEC--C
Confidence 46655532 1111 112222333444544444545565444444444554 3455665542 468999986 3
Q ss_pred chhHHHHHHHHhhCCC-CCeEEEEe
Q 021545 227 GGTIAGLSLGSWLGTL-KAKVHAFS 250 (311)
Q Consensus 227 GGt~aGl~~~~~~~~~-~~rVigV~ 250 (311)
...+.|++.+++..+. ++.|+|++
T Consensus 218 ~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 218 ANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred CccHHHHHHHHHhCCCCCEEEEEeC
Confidence 3445678888887654 67778876
No 88
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=83.49 E-value=11 Score=34.97 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=45.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHH
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 171 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~ 171 (311)
..||| | ++|.-|+++|-..++.|++.+++-+...... .-..++-..+|-+|..++-+ ..+ ...++++.
T Consensus 8 ~~lIT-G-ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~------~la~~l~~~~~v~v~vi~~D-Ls~---~~~~~~l~ 75 (265)
T COG0300 8 TALIT-G-ASSGIGAELAKQLARRGYNLILVARREDKLE------ALAKELEDKTGVEVEVIPAD-LSD---PEALERLE 75 (265)
T ss_pred EEEEE-C-CCchHHHHHHHHHHHCCCEEEEEeCcHHHHH------HHHHHHHHhhCceEEEEECc-CCC---hhHHHHHH
Confidence 44665 5 4578999999999999999999988754210 11223334467777666543 221 12335555
Q ss_pred HHHHHc
Q 021545 172 EKLLKE 177 (311)
Q Consensus 172 ~~l~~~ 177 (311)
+++..+
T Consensus 76 ~~l~~~ 81 (265)
T COG0300 76 DELKER 81 (265)
T ss_pred HHHHhc
Confidence 566554
No 89
>PRK12743 oxidoreductase; Provisional
Probab=79.12 E-value=39 Score=30.11 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=33.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.+|| |+ +|.-|.++|......|.+.+++.+...... ..-...++.+|.++..+.
T Consensus 5 vlIt-Ga-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 5 AIVT-AS-DSGIGKACALLLAQQGFDIGITWHSDEEGA------KETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCCChHHH------HHHHHHHHhcCCceEEEE
Confidence 3454 54 478999999999999998877654332110 011234455677766654
No 90
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=78.96 E-value=6 Score=34.66 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHcCCCEEEEeCCccchHHH-HHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEE
Q 021545 86 AVAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 150 (311)
Q Consensus 86 a~~~G~~~vVt~g~s~GNhg~-AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV 150 (311)
..+.|+++||.+| ...|.|. ++|..|..+|++++++.+-......+ .+...+..|+..|++|
T Consensus 133 L~~~~i~~lii~G-~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~--~~~~al~~~~~~G~~i 195 (196)
T cd01011 133 LRERGIDRVDVVG-LATDYCVKATALDALKAGFEVRVLEDACRAVDPE--TIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHCCCCEEEEEE-ecccHHHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHHccCEE
Confidence 3457999999886 5567775 67778888999988887765532110 0123355666677765
No 91
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=75.94 E-value=12 Score=31.42 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=42.9
Q ss_pred HHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 87 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+.|.++||.+|- ..|.| .++|.-|..+|++++++.+-..+..++ .+...+..|+..|++|+
T Consensus 84 ~~~gi~~lii~G~-~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~--~h~~al~~~~~~~~~v~ 146 (157)
T cd01012 84 KATGRKQVVLAGL-ETHVCVLQTALDLLEEGYEVFVVADACGSRSKE--DHELALARMRQAGAVLT 146 (157)
T ss_pred HhcCCCEEEEEEe-eccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHH--HHHHHHHHHHHCCCEEe
Confidence 3578999998864 45655 677888889999999988776542110 12344667777888875
No 92
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.56 E-value=16 Score=26.66 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.5
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
|+..|| |..|.-+|...+.+|.+++++.+....
T Consensus 2 vvViGg--G~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGG--GFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESS--SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECc--CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 344565 899999999999999999999887654
No 93
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=73.19 E-value=15 Score=34.89 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcC-CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 79 LEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 79 l~~ll~~a~~~G-~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
++-|+.+-..-. .+.||-- |+.|--|+++-..|+.+|++.+=+++++... ..-...++.+||+-++.+.+
T Consensus 148 AyrmL~dfv~L~~GD~vIQN-ganS~VG~~ViQlaka~GiktinvVRdR~~i-------eel~~~Lk~lGA~~ViTeee 218 (354)
T KOG0025|consen 148 AYRMLKDFVQLNKGDSVIQN-GANSGVGQAVIQLAKALGIKTINVVRDRPNI-------EELKKQLKSLGATEVITEEE 218 (354)
T ss_pred HHHHHHHHHhcCCCCeeeec-CcccHHHHHHHHHHHHhCcceEEEeecCccH-------HHHHHHHHHcCCceEecHHH
Confidence 344455543322 3677754 4556789999999999999999999987532 12345678899998877653
No 94
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=71.84 E-value=26 Score=27.62 Aligned_cols=38 Identities=16% Similarity=-0.001 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
|+.++..|+.+|.+.+++. .. ..++..++.+||+.+..
T Consensus 3 G~~a~q~ak~~G~~vi~~~--~~---------~~k~~~~~~~Ga~~~~~ 40 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATD--RS---------EEKLELAKELGADHVID 40 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEE--SS---------HHHHHHHHHTTESEEEE
T ss_pred HHHHHHHHHHcCCEEEEEE--CC---------HHHHHHHHhhccccccc
Confidence 4566666677773333322 11 23566666677665543
No 95
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=71.82 E-value=23 Score=31.18 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcEEEEEcCCCcccCCCCC-ccchHHHHHHCCCEEEE
Q 021545 87 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIEL 152 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~-~~~n~~~~~~~GAeV~~ 152 (311)
.+.|+++||.+| ...|.| .++|.-|..+|++++++-+-..+.- .++. ....+..|+..|++|+.
T Consensus 138 ~~~gi~~lii~G-~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~-~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 138 REHGITELIVMG-LATDYCVKFTVLDALALGYQVNVITDGCRGVN-LQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHcCCCEEEEEE-eccCHHHHHHHHHHHHCCCEEEEEeeccCCCC-CCchhHHHHHHHHHHCCCEEEE
Confidence 357899999876 455666 5788889999999999887654320 0111 12246667778888763
No 96
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=71.34 E-value=17 Score=32.38 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHcCCCEEEEeCCccchHHH-HHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 87 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~-AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+.|+++||.+| ...|+|. .+|.-+..+|++++++.+-..+..++ ....-+..++..|++|+
T Consensus 142 ~~~gi~~lvi~G-~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~--~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 142 KAHGVRRVFICG-LAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPD--AISKQRAELLEAGVILL 204 (212)
T ss_pred HHCCCCEEEEEE-eccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHH--HHHHHHHHHHHCCCEEE
Confidence 357899999876 5567775 67778888999998887765442111 12334667788888875
No 97
>PRK06139 short chain dehydrogenase; Provisional
Probab=69.93 E-value=53 Score=31.11 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=34.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+++..|+ +|--|+++|...++.|.+.+++.+..... ..-...++..|+++..+.
T Consensus 9 ~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l-------~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 9 VVVITGA-SSGIGQATAEAFARRGARLVLAARDEEAL-------QAVAEECRALGAEVLVVP 62 (330)
T ss_pred EEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHH-------HHHHHHHHhcCCcEEEEE
Confidence 3443454 57899999999999999977766543210 111334556788876554
No 98
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.78 E-value=70 Score=28.30 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=32.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
-+|| |+ ++.-|+++|...++.|.+.+++-+.... .......++..|.+++.+
T Consensus 8 ~lVt-Ga-s~GIG~aia~~la~~G~~V~~~~r~~~~-------l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 8 ILIT-SA-GSVLGRTISCHFARLGATLILCDQDQSA-------LKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEE-CC-ccHHHHHHHHHHHHCCCEEEEEcCCHHH-------HHHHHHHHHhcCCCeEEE
Confidence 3444 54 4678999999999999987776443211 011233455667776544
No 99
>PRK07478 short chain dehydrogenase; Provisional
Probab=69.22 E-value=71 Score=28.25 Aligned_cols=32 Identities=31% Similarity=0.155 Sum_probs=23.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|.-|.++|..-.+.|.+++++.+.
T Consensus 8 ~~lIt-Ga-s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 8 VAIIT-GA-SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34454 54 4788999999888999987766543
No 100
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=69.16 E-value=8.3 Score=32.45 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=41.0
Q ss_pred HHHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 86 AVAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 86 a~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
..++|.++||.+|- ..+.| .++|..|..+|++++++.+-......+ .+...+..++..|++|+.
T Consensus 107 L~~~gi~~vil~G~-~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~--~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 107 LRKRGIDTVILCGV-ATDVCVLATARDAFDRGYRVIVVEDACASYSPE--AHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHTTESEEEEEEE-STTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHH--HHHHHHHHHHHHTSEEE-
T ss_pred ccccccceEEEccc-ccCcEEehhHHHHHHCCCEEEEEChhhcCCCHH--HHHHHHHHHHhCCCEEEe
Confidence 34588999998764 45555 578888889999999988654432100 023346667777887763
No 101
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=68.80 E-value=31 Score=31.40 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCC---chhhHHHHHHhHhhh
Q 021545 193 GTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD---PDYFYDYTQGLLDGL 269 (311)
Q Consensus 193 ~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~---~~~~~~~i~~~~~g~ 269 (311)
+..|-..+..++.+... ..+|.++|..|-=|++-++..++ -+..||||...=. .........++++..
T Consensus 154 GVAGiHRLl~~l~r~~~-----~~~~~lIVvAGMEGaLPsvvagL----vD~PVIavPTsVGYG~g~gGiaaLltMLqSC 224 (254)
T COG1691 154 GVAGIHRLLSALKRLKI-----EDADVLIVVAGMEGALPSVVAGL----VDVPVIAVPTSVGYGAGGGGIAALLTMLQSC 224 (254)
T ss_pred ccchHHhhhhHHHHHHh-----hCCCeEEEEcccccchHHHHHhc----cCCCeEecccccccCcCCccHHHHHHHHHhc
Confidence 45665566666655443 36899999999999999999987 4689999987632 222355666677666
Q ss_pred CCCCCCCCeEEeccCCccchHHHHHHHH
Q 021545 270 NAGVDSRDIVNIQNVSVYMTFKNILMNI 297 (311)
Q Consensus 270 ~~~~~~~dvv~v~e~~~~~~~~~~~~~~ 297 (311)
..++. ||.|++|-+...+-..|...
T Consensus 225 spGv~---VVNIdNGfGAa~~A~~I~r~ 249 (254)
T COG1691 225 SPGVG---VVNIDNGFGAAVLAVQILRR 249 (254)
T ss_pred CCCeE---EEEccCchHHHHHHHHHHHH
Confidence 54443 78999998888777666654
No 102
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=68.62 E-value=1.1e+02 Score=30.73 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHcCCcEEEEEc
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+.|.++|..-...|++++++-+
T Consensus 10 G~MG~~lA~nL~~~G~~V~v~dr 32 (470)
T PTZ00142 10 AVMGQNLALNIASRGFKISVYNR 32 (470)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeC
Confidence 89999999999999998887744
No 103
>PRK05866 short chain dehydrogenase; Provisional
Probab=68.47 E-value=66 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=23.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
-+|| |+ +|--|.++|...++.|.+.+++.+.
T Consensus 43 vlIt-Ga-sggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 43 ILLT-GA-SSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred EEEe-CC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3454 54 4789999999999999988777654
No 104
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.65 E-value=91 Score=27.77 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=23.8
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..||| |++. +.-|.++|......|.++++..
T Consensus 8 ~vlVt-Gas~~~giG~~~a~~l~~~G~~vi~~~ 39 (256)
T PRK12859 8 VAVVT-GVSRLDGIGAAICKELAEAGADIFFTY 39 (256)
T ss_pred EEEEE-CCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence 44555 6664 6899999999999999877753
No 105
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=66.94 E-value=1e+02 Score=28.18 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcE
Q 021545 103 NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY 182 (311)
Q Consensus 103 Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y 182 (311)
-.+..+|.+.+..|.++.++ +.... ++ .......++.+-..+..++ +.. .+....+.+.+...+ ...
T Consensus 18 t~a~~la~~l~~~g~~vl~i-D~D~~----n~----~~~~~~~l~~~~~~i~~~~--~i~-~r~fD~Lve~i~~~~-~dv 84 (241)
T PRK13886 18 FIAATIAQYKASKGQKPLCI-DTDPV----NA----TFEGYKALNVRRLNIMDGD--EIN-TRNFDALVEMIASTE-GDV 84 (241)
T ss_pred HHHHHHHHHHHhCCCCEEEE-ECCCC----Cc----hhhhHHhcCCcceecccCC--ccc-hhhHHHHHHHHhccC-CCE
Confidence 45677788888899987665 33221 11 2334555665544443211 111 112244455554333 336
Q ss_pred EecCCCCchhHHHHH--HHHHHHHHHHHhcCCCCCCCCeEEEeCCcc-----hhHHHHHHHHhhCCCCCeEEEEe
Q 021545 183 VIPVGGSNSIGTWGY--IEAIKEIEQQLQTGTGGVKFDDIVVACGSG-----GTIAGLSLGSWLGTLKAKVHAFS 250 (311)
Q Consensus 183 ~ip~g~~n~~~~~Gy--~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG-----Gt~aGl~~~~~~~~~~~rVigV~ 250 (311)
++-.+.++..+...| .....|+.++.+ .+.++..+=+| -|+.|+..-+.....++++|.+-
T Consensus 85 IIDngAs~~~~l~~yl~~n~l~~ll~e~g-------~~lvvh~vi~gg~~~~dtl~~~~~l~~~~~~~~~~Vvw~ 152 (241)
T PRK13886 85 IIDNGASSFVPLSHYLISNQVPALLQDMG-------HELVVHTVVTGGQALLDTVSGFAQLASQFPAECLFVVWL 152 (241)
T ss_pred EEECCCcchHHHHHHHHhCcHHHHHHHCC-------ceEEEEEEECCCcccHHHHHHHHHHHHHcCCCceEEEEe
Confidence 777777777777776 334557766653 44454433334 47777755555544456666543
No 106
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.07 E-value=8.6 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.098 Sum_probs=25.4
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
..+|+ ||.|.|+|...+..|.+++++.++.
T Consensus 3 ~ViGa--G~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 3 AVIGA--GNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEESS--SHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEECc--CHHHHHHHHHHHHcCCEEEEEeccH
Confidence 33565 9999999999999999999998753
No 107
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=65.73 E-value=86 Score=28.11 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=23.9
Q ss_pred CCCEEEEeCCc-cchHHHHHHHHHHHcCCcEEEEE
Q 021545 90 GADCIITIGGI-QSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 90 G~~~vVt~g~s-~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
|...+|| |++ ++--|+++|....+.|.++++..
T Consensus 6 ~k~~lIt-Gas~~~GIG~aia~~la~~G~~v~~~~ 39 (258)
T PRK07370 6 GKKALVT-GIANNRSIAWGIAQQLHAAGAELGITY 39 (258)
T ss_pred CcEEEEe-CCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence 3334555 554 46789999999999999977654
No 108
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=65.37 E-value=92 Score=27.01 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC-CcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 82 LMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-KVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 82 ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~-~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.+.++.+.|++-|+..+.+...+-..+...|+++|+++.+-+... ++ ......+..+|++++.+..
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~--------~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDK--------VKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCCh--------HHHHHHHHHcCCCEEEEcC
Confidence 377788899998776644333345677888999999999876432 21 1234455667999888764
No 109
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=65.12 E-value=96 Score=27.16 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
..|+.|..++.+....+.+..++++.... .....++..|++++..
T Consensus 6 atG~~G~~v~~~L~~~~~~V~~l~R~~~~---------~~~~~l~~~g~~vv~~ 50 (233)
T PF05368_consen 6 ATGNQGRSVVRALLSAGFSVRALVRDPSS---------DRAQQLQALGAEVVEA 50 (233)
T ss_dssp TTSHHHHHHHHHHHHTTGCEEEEESSSHH---------HHHHHHHHTTTEEEES
T ss_pred CccHHHHHHHHHHHhCCCCcEEEEeccch---------hhhhhhhcccceEeec
Confidence 46999999999999999999999987532 2355677789988744
No 110
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=64.76 E-value=76 Score=25.84 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=33.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
++..|+ ++.-|+++|..-.+.|-+.++++...... +........++..|.++..+.-
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~----~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDS----EGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHH----HHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccc----cccccccccccccccccccccc
Confidence 333454 48999999999999976665555444100 0001223445567777777653
No 111
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=63.84 E-value=21 Score=31.37 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=39.3
Q ss_pred HHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 87 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+.|+++||.+|- ..|.| .++|.-|..+|++++++-+-..+..++ .+...+..++..+++|+
T Consensus 138 r~~gi~~lii~Gv-~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~--~h~~al~~l~~~~a~v~ 200 (203)
T cd01013 138 KESGRDQLIITGV-YAHIGCLSTAVDAFMRDIQPFVVADAIADFSLE--EHRMALKYAATRCAMVV 200 (203)
T ss_pred HHcCCCEEEEEEe-ccChhHHHHHHHHHHCCCeEEEeccccCCCCHH--HHHHHHHHHHhheeEee
Confidence 4578999998764 45555 577888888999998887665542110 01223445555566654
No 112
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=63.71 E-value=1.6e+02 Score=29.67 Aligned_cols=132 Identities=15% Similarity=0.023 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCcEEEEE-------cCCCcccCCCCCccchHHHHHHCCCEEEEEcCcccccc---CcHHHHHHHHHHHHH
Q 021545 107 AAAVAAKYLNLDCYLIL-------RTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKI---GSVTLTNILKEKLLK 176 (311)
Q Consensus 107 AlA~~a~~~Gl~~~ivv-------~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~---~~~~~~~~~~~~l~~ 176 (311)
.+..+|+..|.++++.. ....|. +.....+......|++.+..+.+...-. ...+.+.+.+++.++
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PT----RAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~ 336 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPT----RAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEK 336 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCC----cccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHh
Confidence 45678899999988765 322221 1012334455667999888865321100 012334444444433
Q ss_pred cCCCc--EEecC--CCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEecc
Q 021545 177 EGRRP--YVIPV--GGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 252 (311)
Q Consensus 177 ~g~~~--y~ip~--g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~ 252 (311)
..... |..+. ..............+.++.+.+ ..+.||+.+=||.|+.-++.+ .|...|+++.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~-------~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~ 405 (473)
T TIGR01064 337 ALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKL-------DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPN 405 (473)
T ss_pred ccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhc-------CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCC
Confidence 21100 10110 0000011233444566666665 378999999999998877665 478888888775
Q ss_pred C
Q 021545 253 D 253 (311)
Q Consensus 253 g 253 (311)
.
T Consensus 406 ~ 406 (473)
T TIGR01064 406 E 406 (473)
T ss_pred H
Confidence 4
No 113
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.11 E-value=87 Score=27.84 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
|...||| |+ ++--|+++|....+.|.+++++-+... ......++..|.++..+.
T Consensus 8 ~k~~lIt-Ga-s~gIG~aia~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 8 GKVAIIT-GC-NTGLGQGMAIGLAKAGADIVGVGVAEA---------PETQAQVEALGRKFHFIT 61 (251)
T ss_pred CCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEecCchH---------HHHHHHHHHcCCeEEEEE
Confidence 3334555 54 478999999999999999877644321 112334556787776554
No 114
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.75 E-value=89 Score=26.67 Aligned_cols=71 Identities=17% Similarity=0.037 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHc-CCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~-Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
.++..+.+.+. .|...|++.+....+.+...+++ |++++-+.+...... + ...-+..++..+++++++.-+
T Consensus 39 ~l~~~~~~~~~-~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~-~---~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 39 DLLRRAEQRGK-RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEE-E---EEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChh-h---HHHHHHHHHHcCCCEEEEECC
Confidence 34555555554 45556777777777777777776 777666554432110 0 123355677778888877643
No 115
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=61.63 E-value=1e+02 Score=29.17 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=35.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
++|+..|+ +|.-|..+-..|+.+|...++++ .. ..|...++.+||+.+..
T Consensus 144 ~~VLV~ga-aGgVG~~aiQlAk~~G~~~v~~~-~s----------~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGA-AGGVGSAAIQLAKALGATVVAVV-SS----------SEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecC-CchHHHHHHHHHHHcCCcEEEEe-cC----------HHHHHHHHhcCCCEEEc
Confidence 45555554 58899999999999999444443 22 23566899999986653
No 116
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=61.55 E-value=14 Score=32.29 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|+|=.|.++|-.|...|.+++++....
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 489999999999999999999998663
No 117
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.99 E-value=1.2e+02 Score=26.84 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=23.8
Q ss_pred EEEeCCcc-chHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQ-SNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
++..|+++ |.-|.++|..-...|.+.+++.+.
T Consensus 8 vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 8 ALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 44446664 689999999999999987776554
No 118
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=60.82 E-value=1.2e+02 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.5
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+...||| |+ +|.-|+++|....+.|.+++++-+
T Consensus 9 ~k~~lIt-Ga-s~giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 9 GKNILIT-GS-AQGIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CCEEEEE-CC-CChHHHHHHHHHHHcCCEEEEEcC
Confidence 3344555 54 478999999999999987776543
No 119
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=60.42 E-value=29 Score=29.61 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=32.1
Q ss_pred HHcCCCEEEEeCCccchHHH-HHHHHHHHcCCcEEEEEcCCCc
Q 021545 87 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~-AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
.+.|+++||.+| ...|.|. ++|.-|..+|++++++-+-...
T Consensus 110 ~~~gi~~vvi~G-~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~ 151 (179)
T cd01015 110 TARGVDTLIVAG-CSTSGCIRATAVDAMQHGFRPIVVRECVGD 151 (179)
T ss_pred HHcCCCEEEEee-ecccHhHHHHHHHHHHCCCeEEEeeccccC
Confidence 468899999876 5567775 7888999999999988766543
No 120
>PRK08643 acetoin reductase; Validated
Probab=58.94 E-value=1.3e+02 Score=26.54 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=22.2
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
||| |+ +|--|.++|....+.|.+.+++.+.
T Consensus 6 lIt-Ga-s~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 6 LVT-GA-GQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred EEE-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 454 54 4679999999999999887666543
No 121
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=58.48 E-value=17 Score=34.99 Aligned_cols=35 Identities=23% Similarity=0.178 Sum_probs=25.9
Q ss_pred CeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 218 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 218 D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
|-+|+.+|.|+.+..++.+.. -..+|+||+...-.
T Consensus 61 dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA 95 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH
Confidence 789999999966655555432 37899999987644
No 122
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.41 E-value=1.4e+02 Score=26.68 Aligned_cols=30 Identities=20% Similarity=-0.048 Sum_probs=22.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..+|| |+ ++.-|.++|......|.+++++-
T Consensus 12 ~~lIt-Ga-~~~iG~~ia~~l~~~G~~vv~~~ 41 (265)
T PRK07097 12 IALIT-GA-SYGIGFAIAKAYAKAGATIVFND 41 (265)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCeEEEEe
Confidence 34554 44 47899999999999999876663
No 123
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=58.39 E-value=51 Score=28.19 Aligned_cols=101 Identities=15% Similarity=0.041 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEe
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 184 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~i 184 (311)
|..+..+++.+|.+..--++...- ...-+..+...|-.|.+++... +..+++++.+.++.+..-++
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl-------~~~l~~~~~~~~~~ifllG~~~-------~~~~~~~~~l~~~yP~l~iv 78 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL-------FPDLLRRAEQRGKRIFLLGGSE-------EVLEKAAANLRRRYPGLRIV 78 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH-------HHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHHHHHHHCCCeEEE
Confidence 478999999999776322211110 0112334445677888887631 23455666777765543222
Q ss_pred c--CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhH
Q 021545 185 P--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTI 230 (311)
Q Consensus 185 p--~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~ 230 (311)
- .++-++. -..+|.+++.. ..+|.|+++.|+-.-=
T Consensus 79 g~~~g~f~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 79 GYHHGYFDEE-------EEEAIINRINA----SGPDIVFVGLGAPKQE 115 (172)
T ss_pred EecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHHH
Confidence 1 1111111 12344444442 3599999999987543
No 124
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.33 E-value=1.4e+02 Score=26.84 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=22.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+ +|.-|+++|....+.|.+++++.+
T Consensus 12 ~vlVt-Ga-s~giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 12 VAVIT-GG-GGVLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34554 54 478999999999999998766654
No 125
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=58.27 E-value=85 Score=29.51 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCe
Q 021545 166 LTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAK 245 (311)
Q Consensus 166 ~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~r 245 (311)
.+.++.+.+++.+...-....... | -+.|+++++.. ..+|.|+++.|= ||+.-++.++.......
T Consensus 21 ~~~~~~~~l~~~g~~~~~~~t~~~------g---~a~~~a~~a~~----~~~D~via~GGD-GTv~evingl~~~~~~~- 85 (301)
T COG1597 21 LLREVEELLEEAGHELSVRVTEEA------G---DAIEIAREAAV----EGYDTVIAAGGD-GTVNEVANGLAGTDDPP- 85 (301)
T ss_pred HHHHHHHHHHhcCCeEEEEEeecC------c---cHHHHHHHHHh----cCCCEEEEecCc-chHHHHHHHHhcCCCCc-
Confidence 446667777776644333332211 2 23455555542 347777665554 77888899988755444
Q ss_pred EEEEeccCCchh
Q 021545 246 VHAFSVCDDPDY 257 (311)
Q Consensus 246 VigV~~~g~~~~ 257 (311)
+|+-|.|+...
T Consensus 86 -LgilP~GT~Nd 96 (301)
T COG1597 86 -LGILPGGTAND 96 (301)
T ss_pred -eEEecCCchHH
Confidence 99999998753
No 126
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.36 E-value=1.4e+02 Score=26.39 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|..-+|| |+ +|.-|.++|..-.+.|.+.+++-+
T Consensus 9 ~k~vlVt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 9 GKRALIT-GA-STGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CCEEEEE-CC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 3334555 54 468899999999999998766644
No 127
>PRK05650 short chain dehydrogenase; Provisional
Probab=57.21 E-value=1.4e+02 Score=26.60 Aligned_cols=30 Identities=27% Similarity=0.106 Sum_probs=22.0
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+|| |+ +|.-|.++|......|.+.+++.+.
T Consensus 4 lVt-Ga-sggIG~~la~~l~~~g~~V~~~~r~ 33 (270)
T PRK05650 4 MIT-GA-ASGLGRAIALRWAREGWRLALADVN 33 (270)
T ss_pred EEe-cC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 444 54 4789999998888889887766543
No 128
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.88 E-value=1.1e+02 Score=26.14 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEe
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI 184 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~i 184 (311)
|..++.+++.+|.+..--++...- ...=+..+...+..|.+++... +.++++++.+.++-++.-++
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl-------~~~ll~~~~~~~~~v~llG~~~-------~~~~~~~~~l~~~yp~l~i~ 76 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL-------MPALLELAAQKGLRVFLLGAKP-------EVLEKAAERLRARYPGLKIV 76 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH-------HHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCcEEE
Confidence 578899999999873222221110 0111333444578899887531 23355666777765554333
Q ss_pred c--CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 185 P--VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 185 p--~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
- .++.... .-.+|.+++.+ ..+|.|+|+.|+---
T Consensus 77 g~~~g~~~~~-------~~~~i~~~I~~----~~pdiv~vglG~PkQ 112 (171)
T cd06533 77 GYHHGYFGPE-------EEEEIIERINA----SGADILFVGLGAPKQ 112 (171)
T ss_pred EecCCCCChh-------hHHHHHHHHHH----cCCCEEEEECCCCHH
Confidence 1 1111111 11235555553 469999999998654
No 129
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.45 E-value=1.6e+02 Score=26.89 Aligned_cols=48 Identities=8% Similarity=-0.015 Sum_probs=31.0
Q ss_pred hHHhHHHHHHHHHHc--CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 75 KVRKLEFLMADAVAQ--GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 75 K~Rkl~~ll~~a~~~--G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
...+....+...+.+ +++.||..... +....+-..++..|++++++-.
T Consensus 41 ~~~~~~~~i~~~~~~~~~vdgiIi~~~~--~~~~~~~~~~~~~giPvV~~~~ 90 (305)
T cd06324 41 DRFLMLQQARTILQRPDKPDALIFTNEK--SVAPELLRLAEGAGVKLFLVNS 90 (305)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEEcCCc--cchHHHHHHHHhCCCeEEEEec
Confidence 344555667777888 89998875322 2233344567789999887754
No 130
>PRK05876 short chain dehydrogenase; Provisional
Probab=56.03 E-value=1.5e+02 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.083 Sum_probs=22.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+ +|--|+++|..-.+.|.+.+++.+
T Consensus 8 ~vlVT-Ga-s~gIG~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 8 GAVIT-GG-ASGIGLATGTEFARRGARVVLGDV 38 (275)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34555 54 478899999999999998766543
No 131
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=55.71 E-value=2.3e+02 Score=28.49 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEEc
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+.|.++|..-...|++++++-+
T Consensus 8 G~MG~~mA~nL~~~G~~V~v~dr 30 (467)
T TIGR00873 8 AVMGSNLALNMADHGFTVSVYNR 30 (467)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeC
Confidence 89999999999999998887744
No 132
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.86 E-value=1.6e+02 Score=26.66 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=23.9
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+++ +.-|+++|...++.|.+++++-+
T Consensus 9 ~~lVT-Gas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 9 RGLIM-GVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 34555 6554 47899999999999998877643
No 133
>PLN02621 nicotinamidase
Probab=54.82 E-value=38 Score=29.55 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHcCCCEEEEeCCccchHHH-HHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 87 VAQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~-AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+.|.++||.+| ...|.|. .+|.-|..+|++++++.+-..+..++ .+...+..++..|++|.
T Consensus 123 ~~~gi~~lvi~G-v~T~~CV~~Ta~~a~~~gy~v~v~~Da~as~~~~--~h~~al~~~~~~~~~v~ 185 (197)
T PLN02621 123 RKIGVKEVIVTG-VMTNLCCETTAREAFVRGFRVFFSTDATATANEE--LHEATLKNLAYGFAYLV 185 (197)
T ss_pred HHCCCCEEEEEe-cccchhHHHHHHHHHHCCCEEEEeccccCCCCHH--HHHHHHHHHHhhceEee
Confidence 467899999876 5567665 66777888999998888765542110 11233555555666664
No 134
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.70 E-value=1.6e+02 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=22.4
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+++ +.-|+++|....+.|.+.++.-+
T Consensus 8 ~~lIT-Gas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 8 RILVT-GVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred EEEEe-CCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 34555 5554 37888999999999988665543
No 135
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=53.34 E-value=1.6e+02 Score=26.05 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=21.9
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+|| |+ ++.-|+++|....+.|.+++++-+
T Consensus 4 lIt-Ga-s~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 4 LVT-AS-SRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred EEE-cC-CcHHHHHHHHHHHHcCCEEEEEeC
Confidence 554 54 478999999999999998766643
No 136
>PRK08227 autoinducer 2 aldolase; Validated
Probab=53.15 E-value=44 Score=31.06 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCCEEE---EeCCccchH----HHHHHHHHHHcCCcEEEEEcCCCcccCCCCC-ccchHHHHHHCCCEE
Q 021545 79 LEFLMADAVAQGADCII---TIGGIQSNH----CRAAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHI 150 (311)
Q Consensus 79 l~~ll~~a~~~G~~~vV---t~g~s~GNh----g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~-~~~n~~~~~~~GAeV 150 (311)
+..-+++|++.|++.|. ..|+..-+. ...++..|.++|++.++++|......+ .+. ...-.+....+||++
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~-~~~~ia~aaRiaaELGADi 174 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVR-DARYFSLATRIAAEMGAQI 174 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCc-hHHHHHHHHHHHHHHcCCE
Confidence 33448899999998764 234322222 235667899999999987766542111 111 111234455689999
Q ss_pred EEEcC
Q 021545 151 ELISK 155 (311)
Q Consensus 151 ~~v~~ 155 (311)
+.+..
T Consensus 175 VK~~y 179 (264)
T PRK08227 175 IKTYY 179 (264)
T ss_pred EecCC
Confidence 98875
No 137
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.15 E-value=65 Score=29.28 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=34.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|+.++..|+.+|.+-++++... ..+..+++.+|++.+.
T Consensus 122 ~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~----------~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 122 RRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPS----------PDRRELALSFGATALA 170 (280)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHcCCcEec
Confidence 45555553 7899999999999999855555322 1367788899997543
No 138
>PRK07109 short chain dehydrogenase; Provisional
Probab=52.65 E-value=2e+02 Score=26.99 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=35.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.||| |+ +|--|+++|....+.|.+++++.+.... .......++..|+++..+.-
T Consensus 11 vlIT-Ga-s~gIG~~la~~la~~G~~Vvl~~R~~~~-------l~~~~~~l~~~g~~~~~v~~ 64 (334)
T PRK07109 11 VVIT-GA-SAGVGRATARAFARRGAKVVLLARGEEG-------LEALAAEIRAAGGEALAVVA 64 (334)
T ss_pred EEEE-CC-CCHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHHHHHHHHcCCcEEEEEe
Confidence 3454 54 4789999999999999988777654221 01123345667888776653
No 139
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.60 E-value=1.6e+02 Score=26.73 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=23.4
Q ss_pred CEEEEeCCc-cchHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGGI-QSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~s-~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..||| |++ ++.-|+++|....+.|.+.++.-
T Consensus 12 ~~lIt-Gas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 12 RGLIL-GVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34555 654 46799999999999999876654
No 140
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.36 E-value=1.7e+02 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=23.3
Q ss_pred CEEEEeCC-ccchHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGG-IQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~-s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..||| |+ +++--|+++|....+.|.++++..
T Consensus 8 ~~lIT-Ga~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 8 KILIT-GMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 34555 54 356789999999999999887754
No 141
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=52.12 E-value=15 Score=32.12 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=35.8
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHh
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGL 265 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~ 265 (311)
-++.+|||+.+=|+..++.. |+.+++-||+.+....+.+.+.+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~--p~~~~~LvEs~~KK~~FL~~~~~~ 94 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR--PDLQVTLVESVGKKVAFLKEVVRE 94 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH---TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEecCCCCCChhHHHHHhC--CCCcEEEEeCCchHHHHHHHHHHH
Confidence 49999999999999999874 999999999999776665544443
No 142
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=52.11 E-value=50 Score=30.98 Aligned_cols=48 Identities=13% Similarity=-0.032 Sum_probs=33.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |-.|.+++..|+.+|.+.+++.+. ..+..+++.+||+.+.
T Consensus 167 ~~VlV~G~--g~iG~~a~~~a~~~G~~vi~~~~~-----------~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 167 GRLGLYGF--GGSAHLTAQVALAQGATVHVMTRG-----------AAARRLALALGAASAG 214 (329)
T ss_pred CEEEEEcC--CHHHHHHHHHHHHCCCeEEEEeCC-----------hHHHHHHHHhCCceec
Confidence 45555553 668999999999999974444322 1367889999998653
No 143
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=52.07 E-value=35 Score=31.69 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCCCe-EEEEeccCCchhh
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLKAK-VHAFSVCDDPDYF 258 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~~r-VigV~~~g~~~~~ 258 (311)
+|. |+++|+=||+.-++.++.......+ -+||-|.|+...+
T Consensus 53 ~d~-vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdf 94 (293)
T TIGR03702 53 VST-VIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDF 94 (293)
T ss_pred CCE-EEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHH
Confidence 554 4466777778888888764332222 4788888876543
No 144
>PLN02263 serine decarboxylase
Probab=52.01 E-value=2.1e+02 Score=28.88 Aligned_cols=55 Identities=13% Similarity=-0.012 Sum_probs=36.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
..++|.|||.||...-++ ||..--+.++|+++.+.. .-.+.++.+|.+++.|+.+
T Consensus 154 ~G~vtsGGTEaNL~Al~a--ARe~~~~~vvy~S~~aH~--------Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 154 WGYITNCGTEGNLHGILV--GREVFPDGILYASRESHY--------SVFKAARMYRMECVKVDTL 208 (470)
T ss_pred eEEEeCcHHHHHHHHHHH--HHhhcCCcEEEEcCCccH--------HHHHHHHhcCCcceEeccC
Confidence 368888888888754322 344434557888876631 2355788899999888753
No 145
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.66 E-value=1.8e+02 Score=25.97 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCCEEEEeCCcc-chHHHHHHHHHHHcCCcEEEEEcC
Q 021545 90 GADCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 90 G~~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|...||| |+++ +--|+++|...++.|.+++++-+.
T Consensus 10 ~k~~lIt-Gas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 10 GKRGLVV-GIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred CCEEEEE-CCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3334555 6665 479999999999999987776543
No 146
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=51.50 E-value=1.7e+02 Score=25.73 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=23.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.-+|+ |+ +|.-|.++|....+.|.+.+++.+.
T Consensus 13 ~ilIt-Ga-s~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 13 VALVT-GS-ARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 33454 54 5789999999888999987777554
No 147
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=51.44 E-value=1.7e+02 Score=25.60 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=33.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.-+|| |+ +|.-|.++|......|.+++++.+... ......++.++.++..+.-
T Consensus 7 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~vi~~~r~~~---------~~~~~~~~~~~~~~~~~~~ 59 (248)
T TIGR01832 7 VALVT-GA-NTGLGQGIAVGLAEAGADIVGAGRSEP---------SETQQQVEALGRRFLSLTA 59 (248)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEcCchH---------HHHHHHHHhcCCceEEEEC
Confidence 34554 54 467999999999999998777654321 1123344556766655543
No 148
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.39 E-value=1.7e+02 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=21.5
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
++..|+ +|.-|+++|..-...|.+.+++.
T Consensus 7 vlItGa-~g~iG~~~a~~l~~~g~~v~~~~ 35 (250)
T PRK08063 7 ALVTGS-SRGIGKAIALRLAEEGYDIAVNY 35 (250)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEc
Confidence 443454 47899999999999998876643
No 149
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.31 E-value=1.8e+02 Score=25.62 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
|.+-+|| |+ +|--|.++|......|.+.+++-+.... .......++..|.++..+.
T Consensus 10 ~k~vlIt-Ga-~g~iG~~ia~~l~~~G~~V~~~~r~~~~-------~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 10 GRRALVT-GS-SQGIGYALAEGLAQAGAEVILNGRDPAK-------LAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CCEEEEE-CC-cchHHHHHHHHHHHcCCEEEEEeCCHHH-------HHHHHHHHHhcCceEEEEE
Confidence 3344554 54 5789999999999999987665443211 0112334455677776654
No 150
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=49.91 E-value=55 Score=27.98 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHHHHHHhH
Q 021545 202 KEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYDYTQGLL 266 (311)
Q Consensus 202 ~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~~i~~~~ 266 (311)
.|+.++..+ ..+++|++..|.-+.+.|+..++- ...||||.+..+..........++
T Consensus 43 ~~~~~~a~~----~g~~viIa~AG~aa~Lpgvva~~t----~~PVIgvP~~~~~l~G~daLlS~v 99 (156)
T TIGR01162 43 LEYAKEAEE----RGIKVIIAGAGGAAHLPGMVAALT----PLPVIGVPVPSKALSGLDSLLSIV 99 (156)
T ss_pred HHHHHHHHH----CCCeEEEEeCCccchhHHHHHhcc----CCCEEEecCCccCCCCHHHHHHHh
Confidence 455555442 247888888888888999888863 568999998765433434333333
No 151
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=49.33 E-value=54 Score=29.33 Aligned_cols=46 Identities=24% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCCCCeEE-EeCCcchhHHHHHHHHhhCCCCCeEEEEecc
Q 021545 200 AIKEIEQQLQTGTGGVKFDDIV-VACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 252 (311)
Q Consensus 200 ~a~EI~~Q~~~~~~~~~~D~iv-v~vGtGGt~aGl~~~~~~~~~~~rVigV~~~ 252 (311)
+.+||.-++. ||.|+ +++-.||.+.=.+.-++..+++.+|+||+..
T Consensus 23 ~~qeli~~~k-------Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 23 AYQELIWELK-------PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp HHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred HHHHHHHHhC-------CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 3468777764 77765 5555777776666667778899999999994
No 152
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=49.21 E-value=2.1e+02 Score=27.55 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=5.5
Q ss_pred eEEEeCCcchh
Q 021545 219 DIVVACGSGGT 229 (311)
Q Consensus 219 ~ivv~vGtGGt 229 (311)
.+++++|+|..
T Consensus 86 ~~IIAvGGGsv 96 (355)
T cd08197 86 SVIVALGGGVV 96 (355)
T ss_pred cEEEEECCcHH
Confidence 44555555443
No 153
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.17 E-value=1.8e+02 Score=25.29 Aligned_cols=31 Identities=29% Similarity=0.135 Sum_probs=23.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..+|+ |+ +|--|+++|......|.+++++.+
T Consensus 7 ~~lIt-G~-~g~iG~~~a~~l~~~G~~vi~~~r 37 (253)
T PRK08217 7 VIVIT-GG-AQGLGRAMAEYLAQKGAKLALIDL 37 (253)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34554 54 578999999999999998766644
No 154
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=49.16 E-value=2.4e+02 Score=27.93 Aligned_cols=41 Identities=22% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcc
Q 021545 178 GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 227 (311)
Q Consensus 178 g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 227 (311)
+.....++.+-+++.. ...+..++.+++ +.+|.+|-++|.+
T Consensus 102 G~~a~~i~~DVss~E~---v~~lie~I~e~~------G~IDiLVnSaA~~ 142 (398)
T PRK13656 102 GLYAKSINGDAFSDEI---KQKVIELIKQDL------GQVDLVVYSLASP 142 (398)
T ss_pred CCceEEEEcCCCCHHH---HHHHHHHHHHhc------CCCCEEEECCccC
Confidence 4333445554444433 234556666654 3588888888877
No 155
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=49.12 E-value=1.8e+02 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=32.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
+++..|+ +|.-|.++|..-.+.|.+.++........ .......++..+.+++.+.-
T Consensus 4 ~ilItGa-s~giG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 59 (248)
T PRK06947 4 VVLITGA-SRGIGRATAVLAAARGWSVGINYARDAAA------AEETADAVRAAGGRACVVAG 59 (248)
T ss_pred EEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCCHHH------HHHHHHHHHhcCCcEEEEEe
Confidence 3443454 47899999999999998876654332110 01123344556777666543
No 156
>PRK06128 oxidoreductase; Provisional
Probab=48.81 E-value=2.1e+02 Score=26.12 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=34.2
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
|...||| |+ +|--|+++|..-.+.|.+++++....... ........++..|.+++.+.
T Consensus 55 ~k~vlIT-Ga-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 55 GRKALIT-GA-DSGIGRATAIAFAREGADIALNYLPEEEQ-----DAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CCEEEEe-cC-CCcHHHHHHHHHHHcCCEEEEEeCCcchH-----HHHHHHHHHHHcCCeEEEEe
Confidence 3344555 54 47889999999999999887654332110 00112334555677765554
No 157
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=48.38 E-value=13 Score=33.70 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=47.1
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc---hhh----------HHHHHHhHhhhCCC-CCCCCeEEec
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP---DYF----------YDYTQGLLDGLNAG-VDSRDIVNIQ 282 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~---~~~----------~~~i~~~~~g~~~~-~~~~dvv~v~ 282 (311)
-|.|+|..|+.|+-+....+- ..|+.+|.-++..-++ +++ +++..-|++.+|++ ...+|.|.|.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~--~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedegdYVVVK 154 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAK--NRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEGDYVVVK 154 (328)
T ss_pred cceEEECCCccccceeeeeec--cCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCCCEEEEe
Confidence 689999999988765444333 3588888777665332 222 45666689999985 3456777777
Q ss_pred cCCccch
Q 021545 283 NVSVYMT 289 (311)
Q Consensus 283 e~~~~~~ 289 (311)
-...|++
T Consensus 155 HAALFtS 161 (328)
T KOG2960|consen 155 HAALFTS 161 (328)
T ss_pred eHHHHHH
Confidence 6655543
No 158
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=48.11 E-value=60 Score=30.63 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=35.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccch--HHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n--~~~~~~~GAeV~~v~~~ 156 (311)
++|+|+|- |....++-..|++.|.++.+++.+..|. ..|. ...+...|-++.++.+.
T Consensus 117 ~~ILT~~~--S~tv~~~l~~a~~~~~~f~V~v~EsrP~------~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 117 DVVMTHCN--SEAALSVIKTAFEQGKDIEVIATETRPR------KQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred CEEEEECC--cHHHHHHHHHHHHcCCcEEEEEecCCCc------chHHHHHHHHHHCCCCEEEEehh
Confidence 56788753 2344444456667788888888777653 1232 34455578888887653
No 159
>PRK08589 short chain dehydrogenase; Validated
Probab=48.06 E-value=2.1e+02 Score=25.71 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=32.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
..||| |+ ++--|+++|......|.+.+++-+. .. . ......++..|.++..+.
T Consensus 8 ~vlIt-Ga-s~gIG~aia~~l~~~G~~vi~~~r~-~~-~------~~~~~~~~~~~~~~~~~~ 60 (272)
T PRK08589 8 VAVIT-GA-STGIGQASAIALAQEGAYVLAVDIA-EA-V------SETVDKIKSNGGKAKAYH 60 (272)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCc-HH-H------HHHHHHHHhcCCeEEEEE
Confidence 34554 54 4678999999899999988877654 21 0 112334445566665554
No 160
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=47.98 E-value=73 Score=29.87 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=34.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |--|++++.+|+.+|.+-++++.... .++.+.+.+||+.+.
T Consensus 171 ~~VlV~G-~-G~vG~~aiqlak~~G~~~Vi~~~~~~----------~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFVSG-V-GPIGCLIVAAVKTLGAAEIVCADVSP----------RSLSLAREMGADKLV 219 (343)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCcEEEEEeCCH----------HHHHHHHHcCCcEEe
Confidence 4555555 3 78999999999999997555553321 367788889998654
No 161
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.94 E-value=2e+02 Score=25.45 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=97.3
Q ss_pred hHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc--------ccCCCCCccchH--HHHH
Q 021545 75 KVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--------LVDQDPGLIGNL--LVER 144 (311)
Q Consensus 75 K~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~--------~~~~~~~~~~n~--~~~~ 144 (311)
+..+...++..+..++++.+|.+. ...+........++..|++++++-....+ .+..+....++. ..+.
T Consensus 42 ~~~~~~~~i~~l~~~~vdgiii~~-~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~ 120 (271)
T cd06312 42 DVADMARLIEAAIAAKPDGIVVTI-PDPDALDPAIKRAVAAGIPVISFNAGDPKYKELGALAYVGQDEYAAGEAAGERLA 120 (271)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeC-CChHHhHHHHHHHHHCCCeEEEeCCCCCccccccceEEeccChHHHHHHHHHHHH
Confidence 444555667778888999888754 22222223334457789988877432211 000000001111 1111
Q ss_pred H-CCC-EEEEEcC-ccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 021545 145 L-VGA-HIELISK-EEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 221 (311)
Q Consensus 145 ~-~GA-eV~~v~~-~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~iv 221 (311)
. .|. ++..+.. ..+. ....+.+...+.+++.+-....+. ...+.. .+ ...+.++.++. .++|.||
T Consensus 121 ~~~g~~~i~~i~g~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~l~~~------~~~~aI~ 188 (271)
T cd06312 121 ELKGGKNVLCVIHEPGNV--TLEDRCAGFADGLGGAGITEEVIE-TGADPT--EV-ASRIAAYLRAN------PDVDAVL 188 (271)
T ss_pred HhcCCCeEEEEecCCCCc--cHHHHHHHHHHHHHhcCceeeEee-cCCCHH--HH-HHHHHHHHHhC------CCccEEE
Confidence 2 333 3444432 1111 111233334444444321111121 111211 22 23444554432 3588888
Q ss_pred EeCCcchhHHHHHHHHhhCCC--CCeEEEEeccCCchhhHHHHHHhHhhhCCCCCCCCeEEeccCCccchHHHHHHHHHh
Q 021545 222 VACGSGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILM 299 (311)
Q Consensus 222 v~vGtGGt~aGl~~~~~~~~~--~~rVigV~~~g~~~~~~~~i~~~~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~ 299 (311)
+.. +.++.|+..+++..+. ++.|+|++-.... ...+..+.- .-.|..+=....-...++|.+.+-
T Consensus 189 ~~~--d~~a~g~~~al~~~g~~~di~vvg~d~~~~~------~~~l~~g~~-----~~tv~~~~~~~g~~a~~~l~~~~~ 255 (271)
T cd06312 189 TLG--APSAAPAAKALKQAGLKGKVKLGGFDLSPAT------LQAIKAGYI-----QFAIDQQPYLQGYLPVSLLWLYKR 255 (271)
T ss_pred EeC--CccchHHHHHHHhcCCCCCeEEEEecCCHHH------HHHHhcCce-----EEEEecCchhhhHHHHHHHHHHHh
Confidence 765 4557788888888764 5667766543311 111111111 112333334555667778888888
Q ss_pred cCCCCCC
Q 021545 300 NGKQPTP 306 (311)
Q Consensus 300 ~~~~~~~ 306 (311)
+||-|+.
T Consensus 256 ~~~~~~~ 262 (271)
T cd06312 256 YGLLPGS 262 (271)
T ss_pred cCCCCCc
Confidence 8887653
No 162
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=47.84 E-value=48 Score=29.64 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=31.4
Q ss_pred HHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 87 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.+.|+++||.+|-+...-..++|.-|..+|++++++-+-..
T Consensus 147 r~~gI~~lvi~Gv~T~~CV~sTar~A~~~Gy~v~vv~Da~a 187 (226)
T TIGR03614 147 RARGIRNLVFTGIATNVCVESTLRDGFHLEYFGVVLEDATH 187 (226)
T ss_pred HHCCCCEEEEeccCccHhHHHHHHHHHHCCCEEEEechhcc
Confidence 45899999988754434446788889999999999987654
No 163
>PRK06949 short chain dehydrogenase; Provisional
Probab=47.76 E-value=1.9e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=23.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+++..|+ +|.-|.++|....+.|.+.+++.+.
T Consensus 11 ~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 11 VALVTGA-SSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4443454 5789999999999999987766554
No 164
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=47.61 E-value=71 Score=31.62 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=38.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++||..|+ ||.|.-+|..+.++|.+++++.+..... .+.....+..++..|.+++.
T Consensus 273 k~VvVIGg--G~~a~d~A~~l~~~G~~Vtlv~~~~~~~---~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 273 KSVVVIGG--GNTAVDSARTALRLGAEVHCLYRRTRED---MTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCEEEEEeecCccc---CCCCHHHHHHHHhCCCEEEe
Confidence 45665675 8999999999999999998888764321 11112223456777887764
No 165
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=47.38 E-value=2.4e+02 Score=26.28 Aligned_cols=160 Identities=9% Similarity=0.049 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC----------cccCCCCCccchH---HHHHH--
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK----------VLVDQDPGLIGNL---LVERL-- 145 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~----------~~~~~~~~~~~n~---~~~~~-- 145 (311)
..+....+++++.+|.++ ...+.....-..++..|++++++-.... +.+..+....+.. .+.+.
T Consensus 72 ~~i~~l~~~~vdgiIi~~-~~~~~~~~~l~~l~~~giPvV~vd~~~~~~~~~~~~~~~~V~~D~~~ag~~a~~~l~~~~~ 150 (330)
T PRK15395 72 DQIDVLLAKGVKALAINL-VDPAAAPTVIEKARGQDVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWK 150 (330)
T ss_pred HHHHHHHHcCCCEEEEec-cCHHHHHHHHHHHHHCCCcEEEEcCCccccccccccceeEEccChHHHHHHHHHHHHHHHh
Confidence 456667778899888763 2334445444556778999888854211 0010010001111 12221
Q ss_pred ---------CCCE-EEEE-cCccccccCcHHHHHHHHHHHHHcCCCcE--EecCCCCchhHHHHHHHHHHHHHHHHhcCC
Q 021545 146 ---------VGAH-IELI-SKEEYSKIGSVTLTNILKEKLLKEGRRPY--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGT 212 (311)
Q Consensus 146 ---------~GAe-V~~v-~~~~~~~~~~~~~~~~~~~~l~~~g~~~y--~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~ 212 (311)
.|-. +..+ +..... ....+.+...+.+++.+-... ++..+..+. ..||. ...|+.++-+
T Consensus 151 ~~~~~~~~~~g~~~i~~i~g~~~~~--~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~--~~a~~-~~~~~l~~~~--- 222 (330)
T PRK15395 151 ANPAWDLNKDGKIQYVLLKGEPGHP--DAEARTTYVIKELNDKGIKTEQLQLDTAMWDT--AQAKD-KMDAWLSGPN--- 222 (330)
T ss_pred hccccccCCCCceEEEEEecCCCCc--hHHHHHHHHHHHHHhcCCCeeeeecccCCcCH--HHHHH-HHHHHHhhCc---
Confidence 1321 1223 321111 111233344445554432211 122222222 23443 4456654321
Q ss_pred CCCCCCeEEEeCCcchhHHHHHHHHhhCCC-CCeEEEEecc
Q 021545 213 GGVKFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHAFSVC 252 (311)
Q Consensus 213 ~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~-~~rVigV~~~ 252 (311)
..++|.||+ .+..++.|+..++++.+. ++.|+|++-.
T Consensus 223 -~~~~~ai~~--~~d~~A~gvl~al~~~Gl~~vpVvg~D~~ 260 (330)
T PRK15395 223 -ANKIEVVIA--NNDAMAMGAVEALKAHNKSSIPVFGVDAL 260 (330)
T ss_pred -CCCeeEEEE--CCchHHHHHHHHHHhcCCCCCeEEeeCCC
Confidence 124787775 456778899999999888 7778887654
No 166
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=47.32 E-value=34 Score=26.92 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=49.2
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
+++.+.+|++|+.+..... . .+.++++ |-. .++.....+ ...+|.+... +..+|+
T Consensus 7 ~q~ak~~G~~vi~~~~~~~-------k-~~~~~~~---Ga~-~~~~~~~~~---------~~~~i~~~~~----~~~~d~ 61 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRSEE-------K-LELAKEL---GAD-HVIDYSDDD---------FVEQIRELTG----GRGVDV 61 (130)
T ss_dssp HHHHHHTTSEEEEEESSHH-------H-HHHHHHT---TES-EEEETTTSS---------HHHHHHHHTT----TSSEEE
T ss_pred HHHHHHcCCEEEEEECCHH-------H-HHHHHhh---ccc-ccccccccc---------cccccccccc----cccceE
Confidence 6788999999988876321 1 2222233 323 334332222 3345544443 236999
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccC
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCD 253 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g 253 (311)
+|-++|++.++.-. ++...+.-+++-|-..+
T Consensus 62 vid~~g~~~~~~~~---~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 62 VIDCVGSGDTLQEA---IKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEESSSSHHHHHHH---HHHEEEEEEEEEESSTS
T ss_pred EEEecCcHHHHHHH---HHHhccCCEEEEEEccC
Confidence 99999988766444 44444555666666555
No 167
>PRK06701 short chain dehydrogenase; Provisional
Probab=47.21 E-value=2.3e+02 Score=25.93 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=23.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|--|.++|....+.|.+.+++.+.
T Consensus 48 ~iLIt-Ga-sggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 48 VALIT-GG-DSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred EEEEe-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34554 43 5788999999999999988777554
No 168
>PRK07890 short chain dehydrogenase; Provisional
Probab=47.20 E-value=2e+02 Score=25.24 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=24.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+.+|| |+ +|.-|+++|......|.+++++-+.
T Consensus 7 ~vlIt-Ga-~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 7 VVVVS-GV-GPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred EEEEE-CC-CCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 34554 54 4789999999999999987766543
No 169
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.14 E-value=2.1e+02 Score=25.54 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=24.6
Q ss_pred CCCEEEEeCCc-cchHHHHHHHHHHHcCCcEEEEEc
Q 021545 90 GADCIITIGGI-QSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 90 G~~~vVt~g~s-~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|...||| |++ ++.-|.++|..-.+.|.+.++.-+
T Consensus 7 ~k~~lIt-Ga~~s~GIG~aia~~la~~G~~v~~~~r 41 (257)
T PRK08594 7 GKTYVVM-GVANKRSIAWGIARSLHNAGAKLVFTYA 41 (257)
T ss_pred CCEEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence 3334555 655 378999999999999998776643
No 170
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=46.69 E-value=1.9e+02 Score=24.90 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=23.3
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+++..|+ +|.-|.+++....+.|.+.+++.+.
T Consensus 7 ~vlItG~-sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 7 VALVTGA-SRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3443454 5789999999888899987666654
No 171
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.57 E-value=53 Score=30.41 Aligned_cols=49 Identities=6% Similarity=0.039 Sum_probs=34.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|--|.+++..|+.+|.+.+++.+.. .+...++.+|++.+.
T Consensus 140 ~~VLI~ga-~g~vG~~aiqlAk~~G~~Vi~~~~s~-----------~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 140 ETVMVNAA-AGAVGSVVGQIAKLKGCKVVGAAGSD-----------EKVAYLKKLGFDVAF 188 (325)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 45655554 47889999999999999866554332 356777889997544
No 172
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=46.41 E-value=59 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.2
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc
Q 021545 89 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 89 ~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
+-+++|...+|-.|=+-.+||.+|++.|++..+++....+
T Consensus 40 REATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~p 79 (207)
T PF11814_consen 40 REATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGP 79 (207)
T ss_pred HHhceecccCCCCCcChHHHHHHHHHcCCceEEEECCCCC
Confidence 4457776444455667889999999999999999977543
No 173
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=46.16 E-value=58 Score=29.87 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=34.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|--|.++...|+.+|.+.+.+.+.. .+...++.+|++-++
T Consensus 145 ~~vlI~ga-~g~vG~~aiqlA~~~G~~vi~~~~s~-----------~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGA-AGAVGSLVGQIAKIKGCKVIGCAGSD-----------DKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 55655554 47899999999999999865554322 357778889996544
No 174
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=46.06 E-value=73 Score=30.01 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=35.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..| + |.-|..++.+|+.+|.+.+++.+...+ ..++.+++.+|++.+
T Consensus 174 ~~vlI~G-~-G~vG~~a~q~ak~~G~~vi~~~~~~~~--------~~~~~~~~~~Ga~~v 223 (355)
T cd08230 174 RRALVLG-A-GPIGLLAALLLRLRGFEVYVLNRRDPP--------DPKADIVEELGATYV 223 (355)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCeEEEEecCCCC--------HHHHHHHHHcCCEEe
Confidence 3444455 3 889999999999999976665543211 236778889999864
No 175
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.32 E-value=2.1e+02 Score=25.05 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=35.8
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
|..-+|| |+ +|.-|.++|....+.|.+.+++.+..... ..-...++..|.++..+.-
T Consensus 7 ~~~vlIt-Ga-sg~iG~~la~~l~~~G~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK13394 7 GKTAVVT-GA-ASGIGKEIALELARAGAAVAIADLNQDGA-------NAVADEINKAGGKAIGVAM 63 (262)
T ss_pred CCEEEEE-CC-CChHHHHHHHHHHHCCCeEEEEeCChHHH-------HHHHHHHHhcCceEEEEEC
Confidence 3334555 44 57999999999999999877765543210 1123344556888766543
No 176
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=45.24 E-value=77 Score=30.55 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEeCC-cchhHHHH----HHHHhhCCCCCeEEEEeccCC
Q 021545 199 EAIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGL----SLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 199 t~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl----~~~~~~~~~~~rVigV~~~g~ 254 (311)
....||.+++... .....|.+|+..| +|||=+|. +..+++..+ .-++++.+...
T Consensus 81 e~~e~I~~~le~~-~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~ 139 (349)
T cd02202 81 EDLEEVMRAIDDR-GTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPA 139 (349)
T ss_pred HHHHHHHHHHhcc-ccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecC
Confidence 3445577776521 0012788888877 44554453 344555544 34555555554
No 177
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=44.92 E-value=60 Score=26.99 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 87 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.+.|.++|+.+|-....--.++|.-|..+|++++++.+-..
T Consensus 95 ~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~ 135 (155)
T cd01014 95 REAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACA 135 (155)
T ss_pred HHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEeccccc
Confidence 46788999988755445556888999999999998876544
No 178
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=44.83 E-value=64 Score=29.10 Aligned_cols=43 Identities=26% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHcC--CCEEEEe--CCccchHHHHHHHHHHHcCCcEEEEEcCCCc
Q 021545 86 AVAQG--ADCIITI--GGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 86 a~~~G--~~~vVt~--g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
|++.| ++-+|.. +++..-+.+|||++|++-|=+.++++|+...
T Consensus 35 AlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~ 81 (218)
T PF07279_consen 35 ALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS 81 (218)
T ss_pred HHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh
Confidence 45666 3555532 2222246899999999999999999998653
No 179
>PRK06181 short chain dehydrogenase; Provisional
Probab=44.79 E-value=2.2e+02 Score=25.10 Aligned_cols=30 Identities=33% Similarity=0.284 Sum_probs=22.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+|+ |+ +|.-|.++|......|.+.+++.+.
T Consensus 5 lVt-Ga-sg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 5 IIT-GA-SEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred EEe-cC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 444 54 4789999999999999987776544
No 180
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=44.78 E-value=71 Score=30.26 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=35.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccch--HHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n--~~~~~~~GAeV~~v~~~ 156 (311)
++|+|+|- |....++-..|.+.|.++.+++.+..|.. .|. ...+...|-++.++.+.
T Consensus 122 ~~ILT~~~--S~tv~~~l~~A~~~~k~~~V~v~EsrP~~------~G~~~a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 122 DVIMTHCN--SSAALSVIKTAHEQGKDIEVIATETRPRN------QGHITAKELAEYGIPVTLIVDS 180 (310)
T ss_pred CEEEEeCC--cHHHHHHHHHHHHCCCeEEEEEecCCchh------hHHHHHHHHHHCCCCEEEEehh
Confidence 56788753 23444444566667888888888776531 232 34455678888888753
No 181
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=44.58 E-value=1.4e+02 Score=28.00 Aligned_cols=57 Identities=23% Similarity=0.103 Sum_probs=34.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccch--HHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN--LLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n--~~~~~~~GAeV~~v~~~ 156 (311)
++|+|++-| -...++-..|...|.++.+++.+..|.. +|. ...+...|-.+.++.+.
T Consensus 111 ~~ILTh~~S--~tv~~~l~~A~~~gk~~~V~v~EsrP~~------qG~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 111 DVIITHSFS--SAVLEILKTAKRKGKRFKVILTESAPDY------EGLALANELEFLGIEFEVITDA 169 (275)
T ss_pred CEEEEECCc--HHHHHHHHHHHHcCCceEEEEecCCCch------hHHHHHHHHHHCCCCEEEEecc
Confidence 467777422 2334444556778888888888776531 222 23344568888887653
No 182
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=44.44 E-value=2.3e+02 Score=25.11 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=33.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.-+|| |+ +|--|.++|....+.|.+.+++.+...+. .......++..|.++..+.
T Consensus 9 ~~lIt-Ga-~~gIG~~ia~~l~~~G~~vvi~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 63 (261)
T PRK08936 9 VVVIT-GG-STGLGRAMAVRFGKEKAKVVINYRSDEEE------ANDVAEEIKKAGGEAIAVK 63 (261)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCCCHHH------HHHHHHHHHHcCCeEEEEE
Confidence 33454 54 46889999999999999887766543211 0111233445677766554
No 183
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=44.19 E-value=3.1e+02 Score=26.62 Aligned_cols=67 Identities=15% Similarity=0.034 Sum_probs=39.8
Q ss_pred CCCCCCCC-CCCCchhHHhHH--HHHHHHH-HcCCCEEEEeC-CccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 61 TERDDLSG-MQLSGNKVRKLE--FLMADAV-AQGADCIITIG-GIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 61 vKRedl~~-~~~ggnK~Rkl~--~ll~~a~-~~G~~~vVt~g-~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
+|-|..++ +.+-..+.|... ..+.++. +.|...++..+ +....-.+..|-.|+..|.+++++.+...
T Consensus 163 Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 163 IKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLV 234 (367)
T ss_pred eeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 45443333 335667777543 3344443 23544444222 22347888999999999999998886643
No 184
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=43.89 E-value=1.7e+02 Score=25.03 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+.+..+.+.|++.++..+.+..+....+...|++.|++..+.++.... ..........|++.+.+.
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t--------~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVED--------PEKRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCC--------HHHHHHHHHCCCCEEEEc
Confidence 345677788999888765432345667888899999998875443221 112333555788877663
No 185
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=43.72 E-value=2.3e+02 Score=24.93 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc------ccCCCCCccchH---HHHHHC-C
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV------LVDQDPGLIGNL---LVERLV-G 147 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~------~~~~~~~~~~n~---~~~~~~-G 147 (311)
.....+..+..++++.+|..+ ...+....+...+...|++++.+-..... .+..+....+.. .+.+.+ |
T Consensus 44 ~~~~~i~~l~~~~vdgiii~~-~~~~~~~~~~~~l~~~~iPvv~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~ 122 (272)
T cd06301 44 TQLSQVENFIAQGVDAIIVVP-VDTAATAPIVKAANAAGIPLVYVNRRPENAPKGVAYVGSDEVVAGRLQAEYVADKLGG 122 (272)
T ss_pred HHHHHHHHHHHcCCCEEEEec-CchhhhHHHHHHHHHCCCeEEEecCCCCCCCCeeEEEecChHHHHHHHHHHHHHHhCC
Confidence 333457777788899888654 33333345555578899998877532211 011110011121 123332 3
Q ss_pred -CEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc
Q 021545 148 -AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGS 226 (311)
Q Consensus 148 -AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt 226 (311)
.++.++....... ....+.+...+.+.+.+ ...+......+.....++ ....++.++. ..+|+||+. +
T Consensus 123 ~~~i~~i~~~~~~~-~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~------~~~~ai~~~--~ 191 (272)
T cd06301 123 KGNVAILMGPLGQS-AQIDRTKGVEEVLAKYP-DIKVVEEQTANWSRAEAM-DLMENWLSSG------GKIDAVVAN--N 191 (272)
T ss_pred CccEEEEECCCCCc-cHHHHHHHHHHHHHHCC-CcEEEecCCCCccHHHHH-HHHHHHHHhC------CCCCEEEEC--C
Confidence 3676664321111 11122233444555433 222222211111112333 2334444332 357888763 3
Q ss_pred chhHHHHHHHHhhCCC---CCeEEEEecc
Q 021545 227 GGTIAGLSLGSWLGTL---KAKVHAFSVC 252 (311)
Q Consensus 227 GGt~aGl~~~~~~~~~---~~rVigV~~~ 252 (311)
...+.|+..++++.+. ++.|+|++-.
T Consensus 192 d~~a~~~~~~l~~~g~~~~di~ivg~d~~ 220 (272)
T cd06301 192 DEMALGAIMALKAAGKSDKDVPVAGIDGT 220 (272)
T ss_pred CchHHHHHHHHHHcCCCCCCcEEEeeCCC
Confidence 3456688899887664 5677777543
No 186
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.63 E-value=89 Score=29.50 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=37.9
Q ss_pred EEEEeCC-ccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGG-IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~-s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+|..+|- ..+|.+++++.+++++|++++++.|..-.. | ..-+..++..|+++..+.
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~----~--~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM----P--KEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC----C--HHHHHHHHHcCCEEEEEC
Confidence 5555553 237999999999999999999999876411 1 112344455677776543
No 187
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=43.57 E-value=63 Score=30.11 Aligned_cols=49 Identities=6% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHH-CCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~-~GAeV~~ 152 (311)
++|+..|+ +|.-|++++..|+.+|.+.+++.+.. .+...++. +|++-+.
T Consensus 153 ~~VlI~Ga-~G~vG~~aiqlAk~~G~~Vi~~~~~~-----------~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAA-SGAVGQLVGQLAKLKGCYVVGSAGSD-----------EKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHhcCCceeE
Confidence 45555554 57899999999999999865554332 35667777 9996443
No 188
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=43.48 E-value=1.5e+02 Score=28.37 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=20.7
Q ss_pred HHHHHHHcCCcEEEEEcCCCcccCCCCCccch-HHHHHHCCCEEEEEcC
Q 021545 108 AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIELISK 155 (311)
Q Consensus 108 lA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n-~~~~~~~GAeV~~v~~ 155 (311)
|.=.-+..+=+..++++...- .|+ +...-++||+-+.+++
T Consensus 268 L~Evv~aV~~ri~V~lDGGVR--------~G~DVlKALALGAk~VfiGR 308 (363)
T KOG0538|consen 268 LPEVVKAVEGRIPVFLDGGVR--------RGTDVLKALALGAKGVFIGR 308 (363)
T ss_pred HHHHHHHhcCceEEEEecCcc--------cchHHHHHHhcccceEEecC
Confidence 333344444455666665541 122 4445556777666665
No 189
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=43.38 E-value=2.3e+02 Score=24.80 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=83.8
Q ss_pred chhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC--CCcccCC----CCCccch---HHHH
Q 021545 73 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT--SKVLVDQ----DPGLIGN---LLVE 143 (311)
Q Consensus 73 gnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~--~~~~~~~----~~~~~~n---~~~~ 143 (311)
.+........+..++.+|.+.||.. .........+.--|+..|++++.+-.. ....... ++...|. ..+.
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~-~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~ 116 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVS-PVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLA 116 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEE-SSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEec-CCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHH
Confidence 3444566677888999999988865 344455556677789999998887655 1110000 0000111 1233
Q ss_pred HHCC--CEEEEE-cCccccccCcHHHHHHHHHHHHHcCCCcEEecCC-CCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 144 RLVG--AHIELI-SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG-GSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 144 ~~~G--AeV~~v-~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g-~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
+.++ .+|.++ +...+. ....+.+...+.+.+.+ ..-++... +.+.....+ .....++.+. .++|.
T Consensus 117 ~~~~~~~~v~~~~~~~~~~--~~~~r~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~a-~~~~~~~l~~-------~~~~~ 185 (257)
T PF13407_consen 117 EKLGAKGKVLILSGSPGNP--NTQERLEGFRDALKEYP-GVEIVDEYEYTDWDPEDA-RQAIENLLQA-------NPVDA 185 (257)
T ss_dssp HHHTTTEEEEEEESSTTSH--HHHHHHHHHHHHHHHCT-TEEEEEEEEECTTSHHHH-HHHHHHHHHH-------TTEEE
T ss_pred HHhccCceEEeccCCCCch--HHHHHHHHHHHHHhhcc-eeeeeeeeeccCCCHHHH-HHHHHHhhhc-------CCceE
Confidence 4445 466655 332221 11223344455565522 33333310 111111111 1223344331 22666
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCC--CeEEEEec
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLK--AKVHAFSV 251 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~--~rVigV~~ 251 (311)
||+ .+...+.|++.+++..+.. +.|+|++.
T Consensus 186 i~~--~~~~~~~g~~~al~~~g~~~~~~v~g~d~ 217 (257)
T PF13407_consen 186 IIA--CNDGMALGAAQALQQAGRAGKVIVVGFDG 217 (257)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTCTTTSEEEEEEC
T ss_pred EEe--CCChHHHHHHHHHHHcCCcccceeecCCC
Confidence 654 4556677899999987754 44666654
No 190
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.15 E-value=2.8e+02 Score=25.83 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
+.+.+++++.+.|.+.|+..- --=-+...+-.+|+++|++.+.+++.++
T Consensus 110 Gie~F~~~~~~~GvdGlivpD-LP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 110 GIEKFLRRAKEAGVDGLLVPD-LPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred hHHHHHHHHHHcCCCEEEeCC-CChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 444445555555555544321 1112334455555555555555554443
No 191
>PRK08278 short chain dehydrogenase; Provisional
Probab=43.15 E-value=2.2e+02 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=24.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
.+|| |+ +|--|.++|....+.|.+++++.+..
T Consensus 9 vlIt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 9 LFIT-GA-SRGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCEEEEEeccc
Confidence 3454 54 47889999999999999888776543
No 192
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=42.25 E-value=82 Score=32.14 Aligned_cols=49 Identities=20% Similarity=0.026 Sum_probs=35.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
++|+..|+ |..|++.+..|+.+|-+ +++++.. ..++.+.+.+||+.+.+
T Consensus 166 ~kVlViGa--G~iGL~Ai~~Ak~lGA~-V~a~D~~----------~~rle~aeslGA~~v~i 214 (509)
T PRK09424 166 AKVLVIGA--GVAGLAAIGAAGSLGAI-VRAFDTR----------PEVAEQVESMGAEFLEL 214 (509)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCE-EEEEeCC----------HHHHHHHHHcCCeEEEe
Confidence 45555665 89999999999999985 4444332 24688899999996544
No 193
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=42.21 E-value=3.9e+02 Score=27.17 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHcCCcEEEEE
Q 021545 102 SNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
||.|.++|.--...|++.+++=
T Consensus 15 G~MG~~mA~nL~~~G~~V~V~N 36 (493)
T PLN02350 15 AVMGQNLALNIAEKGFPISVYN 36 (493)
T ss_pred HHHHHHHHHHHHhCCCeEEEEC
Confidence 8999999999999999988883
No 194
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=42.15 E-value=1.5e+02 Score=27.14 Aligned_cols=85 Identities=18% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 179 RRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 179 ~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
+..+++|....+..........+.+..+++- +.+. ++++|.|.|+.-++..+.. .+...+.-|+..|+....
T Consensus 20 k~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l------~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~vV~l~Gg~~~~ 91 (255)
T PF04198_consen 20 KEVIVVPSPSDDEDILESLGEAAAEYLSELL------KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVTVVPLIGGVGNS 91 (255)
T ss_dssp SEEEEESSSTTTHHHHHHHHHHHHHHHHHH--------TTE-EEEE-TSHHHHHHHHTS---SSSSCEEEEESBSBTTTS
T ss_pred CEEEEecCCCChHHHHHHHHHHHHHHHHHhC------CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcEEEECCCCCCCC
Confidence 3578888765443223332234444433332 1233 8899999999999998876 455567778888764321
Q ss_pred -----HHHHHHhHhhhCC
Q 021545 259 -----YDYTQGLLDGLNA 271 (311)
Q Consensus 259 -----~~~i~~~~~g~~~ 271 (311)
..-+.+++..++.
T Consensus 92 ~~~~~~~i~~~lA~~~g~ 109 (255)
T PF04198_consen 92 NSYQANEIARRLAEKLGG 109 (255)
T ss_dssp SGGSHHHHHHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHhCC
Confidence 2233456666665
No 195
>PRK06202 hypothetical protein; Provisional
Probab=41.92 E-value=32 Score=30.53 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.0
Q ss_pred CeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 218 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 218 D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
..+=+++|+|....-++...+..++..+|+||+.....
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~ 100 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRA 100 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHH
Confidence 46667888887666666655556778899999997654
No 196
>PRK12937 short chain dehydrogenase; Provisional
Probab=41.75 E-value=2.3e+02 Score=24.49 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=34.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.+|| |+ +|.-|+++|..-.+.|.+.+++.+...+. ...-...++.+|.++..+.-
T Consensus 8 vlIt-G~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK12937 8 AIVT-GA-SRGIGAAIARRLAADGFAVAVNYAGSAAA------ADELVAEIEAAGGRAIAVQA 62 (245)
T ss_pred EEEe-CC-CchHHHHHHHHHHHCCCEEEEecCCCHHH------HHHHHHHHHhcCCeEEEEEC
Confidence 3454 54 58999999999999999887776543211 01122344556877776653
No 197
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=41.70 E-value=1.7e+02 Score=29.85 Aligned_cols=50 Identities=20% Similarity=0.056 Sum_probs=36.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.+++..|+ |..|++.+..++.+|-+.+++ +.+. .++...+.+|++.+.++
T Consensus 165 akVlViGa--G~iGl~Aa~~ak~lGA~V~v~-d~~~----------~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 165 AKVLVIGA--GVAGLAAIGAANSLGAIVRAF-DTRP----------EVKEQVQSMGAEFLELD 214 (511)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEEE-eCCH----------HHHHHHHHcCCeEEecc
Confidence 34555564 899999999999999874443 3321 35778888999987765
No 198
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.69 E-value=2.4e+02 Score=24.68 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=80.9
Q ss_pred hHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCccc--------CCCCCccch---HHHH
Q 021545 75 KVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV--------DQDPGLIGN---LLVE 143 (311)
Q Consensus 75 K~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~--------~~~~~~~~n---~~~~ 143 (311)
...+...++..+..++.+.||..+ ...+........++..|++++++-....... ..+....+. ..+.
T Consensus 41 ~~~~~~~~~~~l~~~~vdgiii~~-~~~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~v~~~v~~d~~~~g~~~~~~l~ 119 (275)
T cd06317 41 DVARQAAQVEDLIAQKVDGIILWP-TDGQAYIPGLRKAKQAGIPVVITNSNISEKGFEFIKSFTGPDDISQGERSAEAMC 119 (275)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec-CCccccHHHHHHHHHCCCcEEEeCCCCCCCccchhhhhccccHHHHHHHHHHHHH
Confidence 334444557777788899887653 2223333444556789999987643211000 000000111 1122
Q ss_pred HHC-CC-EEEEEc-CccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 021545 144 RLV-GA-HIELIS-KEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 220 (311)
Q Consensus 144 ~~~-GA-eV~~v~-~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~i 220 (311)
+.+ |. +|..+. ...+. ....+.+...+.+++.+....++.....+.....++ ..+.++.++-. ..+|.|
T Consensus 120 ~~~~g~~~i~~l~~~~~~~--~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-----~~~~ai 191 (275)
T cd06317 120 KALGGKGQIVVIAGQPGNG--TAIERQKGFEDELAEVCPGVEVLDTQPADWDREKAQ-VAMEALITKFG-----DDIDGV 191 (275)
T ss_pred HHcCCCceEEEEecCCCCc--hHHHHHHHHHHHHHhhCCCCEEEeccCCCCCHHHHH-HHHHHHHHhCC-----CCccEE
Confidence 332 54 455553 22221 111222333444555443322221111111111233 23445544310 248888
Q ss_pred EEeCCcchhHHHHHHHHhhCCC--CCeEEEEeccC
Q 021545 221 VVACGSGGTIAGLSLGSWLGTL--KAKVHAFSVCD 253 (311)
Q Consensus 221 vv~vGtGGt~aGl~~~~~~~~~--~~rVigV~~~g 253 (311)
|+ ++...+.|+..++++.+. ++.|+|++...
T Consensus 192 ~~--~~d~~a~g~~~~l~~~g~~~dv~v~g~d~~~ 224 (275)
T cd06317 192 YA--GDDNMARGALNAAKEAGLAGGIVIVGANNFA 224 (275)
T ss_pred EE--CCCcHHHHHHHHHHhcCCcCCcEEEEeCCCH
Confidence 85 444567899999998775 78888877654
No 199
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=41.54 E-value=78 Score=31.38 Aligned_cols=47 Identities=9% Similarity=0.038 Sum_probs=33.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|. |.-|+.+|..++.+|.++++ +.... .+....+.+|++++
T Consensus 203 ktVvViG~--G~IG~~va~~ak~~Ga~ViV-~d~d~----------~R~~~A~~~G~~~~ 249 (413)
T cd00401 203 KVAVVAGY--GDVGKGCAQSLRGQGARVIV-TEVDP----------ICALQAAMEGYEVM 249 (413)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCEEEE-EECCh----------hhHHHHHhcCCEEc
Confidence 45665664 89999999999999997544 43221 24666777888654
No 200
>PRK11440 putative hydrolase; Provisional
Probab=41.40 E-value=67 Score=27.59 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 87 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.+.|+++||.+|-....--.++|.-|..+|++++++.+-..
T Consensus 117 ~~~gi~~lii~Gv~T~~CV~~Ta~~A~~~gy~v~vv~Da~a 157 (188)
T PRK11440 117 RRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACS 157 (188)
T ss_pred HHCCCCEEEEeeechhHHHHHHHHHHHHCCCEEEEechhhc
Confidence 35789999988754434446888999999999998876544
No 201
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=41.27 E-value=2.6e+02 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..+|| |+ ++.-|+++|....+.|.+++++.+
T Consensus 10 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 10 TLVIS-GG-TRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEcC
Confidence 34454 54 478899999999999998776644
No 202
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.11 E-value=2.6e+02 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=22.5
Q ss_pred CEEEEeCC-ccchHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGG-IQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~-s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..||| |+ +++--|+++|....+.|.++++.-
T Consensus 8 ~vlIt-Gas~~~GIG~a~a~~l~~~G~~v~~~~ 39 (260)
T PRK06997 8 RILIT-GLLSNRSIAYGIAKACKREGAELAFTY 39 (260)
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHCCCeEEEEc
Confidence 34555 54 346678999999999999887753
No 203
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=41.01 E-value=1.8e+02 Score=28.90 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCcE-EEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCC-cEE
Q 021545 106 RAAAVAAKYLNLDC-YLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRR-PYV 183 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~-~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~-~y~ 183 (311)
+|+-..++.+-=+- ++++. . |+..+-+..++.+|++++.|+.++ +.-..+.+++ .+++...+ .|+
T Consensus 166 ~al~l~~~~l~~pGd~v~vE-~-------PtY~~~~~~~~~~g~~~~~vp~d~--~G~~~e~le~---~~~~~~~k~~y~ 232 (459)
T COG1167 166 QALDLLLRLLLDPGDTVLVE-D-------PTYPGALQALEALGARVIPVPVDE--DGIDPEALEE---ALAQWKPKAVYV 232 (459)
T ss_pred HHHHHHHHHhCCCCCEEEEc-C-------CCcHHHHHHHHHcCCcEEecCCCC--CCCCHHHHHH---HHhhcCCcEEEE
Confidence 45556666654443 33332 2 223456889999999999997642 1112222232 23322233 466
Q ss_pred ecCCCCchhH
Q 021545 184 IPVGGSNSIG 193 (311)
Q Consensus 184 ip~g~~n~~~ 193 (311)
+|. +.||.+
T Consensus 233 ~P~-~qNPtG 241 (459)
T COG1167 233 TPT-FQNPTG 241 (459)
T ss_pred CCC-CCCCCC
Confidence 665 467765
No 204
>PRK07454 short chain dehydrogenase; Provisional
Probab=40.95 E-value=2.4e+02 Score=24.46 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=23.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+|+ |+ +|.-|+++|....+.|.+++++.+.
T Consensus 10 lIt-G~-sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 10 LIT-GA-SSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred EEe-CC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 444 54 5899999999999999987777653
No 205
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=40.74 E-value=2.1e+02 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=17.0
Q ss_pred eEEEeCCcchh--HHHHHHHHhhCCCCCeEEEEec
Q 021545 219 DIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 251 (311)
Q Consensus 219 ~ivv~vGtGGt--~aGl~~~~~~~~~~~rVigV~~ 251 (311)
.+++++|+|.. ++|.+..... ..+++|.|..
T Consensus 87 d~IIaiGGGsv~D~ak~vA~~~~--rgip~i~VPT 119 (345)
T cd08195 87 SLIIALGGGVVGDLAGFVAATYM--RGIDFIQIPT 119 (345)
T ss_pred CeEEEECChHHHhHHHHHHHHHh--cCCCeEEcch
Confidence 46777877765 4444443332 2455666655
No 206
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=40.70 E-value=57 Score=31.29 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 021545 141 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 220 (311)
Q Consensus 141 ~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~i 220 (311)
..++.+| ++.+|....+... ..++++.+.|++.+-...+...-..++.- ....|+.+++.+ ..+| .
T Consensus 16 ~~l~~~g-r~lvVt~~~~~~~---~~~~~v~~~L~~~~i~~~~~~~~~~~p~~-----~~v~~~~~~~~~----~~~D-~ 81 (366)
T PF00465_consen 16 EELKRLG-RVLVVTDPSLSKS---GLVDRVLDALEEAGIEVQVFDGVGPNPTL-----EDVDEAAEQARK----FGAD-C 81 (366)
T ss_dssp HHHHCTT-EEEEEEEHHHHHH---THHHHHHHHHHHTTCEEEEEEEESSS-BH-----HHHHHHHHHHHH----TTSS-E
T ss_pred HHHHhcC-CEEEEECchHHhC---ccHHHHHHHHhhCceEEEEEecCCCCCcH-----HHHHHHHHHHHh----cCCC-E
Confidence 3466678 8777765433321 13456666776655333233211233331 233566666653 3476 5
Q ss_pred EEeCCcchhHHHHHHHHhh--C----------------CCCCeEEEEeccCC
Q 021545 221 VVACGSGGTIAGLSLGSWL--G----------------TLKAKVHAFSVCDD 254 (311)
Q Consensus 221 vv~vGtGGt~aGl~~~~~~--~----------------~~~~rVigV~~~g~ 254 (311)
|+++|+|.. +-++++... . .+..++|+|..-.+
T Consensus 82 IIaiGGGS~-~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 82 IIAIGGGSV-MDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp EEEEESHHH-HHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred EEEcCCCCc-CcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 677888765 334444432 1 12368888887543
No 207
>PRK07832 short chain dehydrogenase; Provisional
Probab=40.65 E-value=2.7e+02 Score=24.88 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=21.2
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+|| |+ +|--|.++|...++.|.+.+++-+
T Consensus 4 lIt-Ga-s~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 4 FVT-GA-ASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEe-CC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 444 54 478899999999999988666543
No 208
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=40.62 E-value=71 Score=30.04 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=33.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |-.|.+++.+|+.+|.+.++ +... ..++.+++.+|++.++
T Consensus 168 ~~VlV~G~--G~vG~~a~~~a~~~G~~vi~-~~~~----------~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIVIGA--GGVGGYMVQTAKAMGAAVVA-IDID----------PEKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCeEEE-EcCC----------HHHHHHHHHhCCceEe
Confidence 45665664 88999999999999997443 3222 1357777889997544
No 209
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=40.45 E-value=1.2e+02 Score=33.50 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHH
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 171 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~ 171 (311)
+.|+..|| |=.|.+.|...++.|+++++|=.... +|.-+..-=.+ |.. ..+.+++..
T Consensus 307 kkVaVIGs--GPAGLsaA~~Lar~G~~VtVfE~~~~------------------~GG~l~yGIP~-~rl--p~~vi~~~i 363 (944)
T PRK12779 307 PPIAVVGS--GPSGLINAYLLAVEGFPVTVFEAFHD------------------LGGVLRYGIPE-FRL--PNQLIDDVV 363 (944)
T ss_pred CeEEEECC--CHHHHHHHHHHHHCCCeEEEEeeCCC------------------CCceEEccCCC-CcC--hHHHHHHHH
Q ss_pred HHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcc
Q 021545 172 EKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 227 (311)
Q Consensus 172 ~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 227 (311)
+.+++.| .-+...- ..|..-...++.++ .+|+||+++|++
T Consensus 364 ~~l~~~G--v~f~~n~------~vG~dit~~~l~~~--------~yDAV~LAtGA~ 403 (944)
T PRK12779 364 EKIKLLG--GRFVKNF------VVGKTATLEDLKAA--------GFWKIFVGTGAG 403 (944)
T ss_pred HHHHhhc--CeEEEeE------EeccEEeHHHhccc--------cCCEEEEeCCCC
No 210
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=40.44 E-value=46 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=27.7
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|...|-..+|.+++++.+|+++|+.++++.|..
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 444564458999999999999999999998887
No 211
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=40.40 E-value=31 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.1
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
+.+|+ |.-++++|..++.+|++++++=|..
T Consensus 2 ~I~Ga--G~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGA--GHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES---STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeC--cHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 44565 7899999999999999999997664
No 212
>PLN02564 6-phosphofructokinase
Probab=40.20 E-value=4.1e+02 Score=26.98 Aligned_cols=49 Identities=10% Similarity=0.085 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcE-EEEEcCCC
Q 021545 79 LEFLMADAVAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDC-YLILRTSK 127 (311)
Q Consensus 79 l~~ll~~a~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~-~ivv~~~~ 127 (311)
...++....+.+++.++..||-.+..+ ..++-.+++.|+++ ++-+|.+.
T Consensus 165 ~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTI 215 (484)
T PLN02564 165 TSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTI 215 (484)
T ss_pred HHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccc
Confidence 344566677889999999987655543 35566777789996 45556654
No 213
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.90 E-value=3.3e+02 Score=25.70 Aligned_cols=160 Identities=18% Similarity=0.105 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC----cccCCCCCccch---HHHHHHCCCE-
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK----VLVDQDPGLIGN---LLVERLVGAH- 149 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~----~~~~~~~~~~~n---~~~~~~~GAe- 149 (311)
.-...+....+++++.||..+ ...|. .........+++++++-+... +.+..+. ..+- ...+...|.+
T Consensus 102 ~e~~~~~~l~~~~vdGiIi~~-~~~~~--~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn-~~~~~~a~~~L~~~G~~~ 177 (333)
T COG1609 102 KEREYLETLLQKRVDGLILLG-ERPND--SLLELLAAAGIPVVVIDRSPPGLGVPSVGIDN-FAGAYLATEHLIELGHRR 177 (333)
T ss_pred HHHHHHHHHHHcCCCEEEEec-CCCCH--HHHHHHHhcCCCEEEEeCCCccCCCCEEEECh-HHHHHHHHHHHHHCCCce
Confidence 334456666778899998765 33343 344455555999988876432 1110000 0111 2233445655
Q ss_pred EEEEcCccccccCcHHHHHHHHHHHHHcCCC--cEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcc
Q 021545 150 IELISKEEYSKIGSVTLTNILKEKLLKEGRR--PYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 227 (311)
Q Consensus 150 V~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~--~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 227 (311)
+..+.... +.....++.+...+.+++.+-. ..++..+..+. ..|+ ..+.++..... ..||.||| .+-
T Consensus 178 i~~i~~~~-~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~--~~g~-~~~~~ll~~~~-----~~ptAif~--~nD 246 (333)
T COG1609 178 IAFIGGPL-DSSASRERLEGYRAALREAGLPINPEWIVEGDFSE--ESGY-EAAERLLARGE-----PRPTAIFC--AND 246 (333)
T ss_pred EEEEeCCC-ccccHhHHHHHHHHHHHHCCCCCCcceEEecCCCh--HHHH-HHHHHHHhcCC-----CCCcEEEE--cCc
Confidence 55554321 1111123334455556655433 23344332222 2333 34445544321 12899997 456
Q ss_pred hhHHHHHHHHhhCCC----CCeEEEEecc
Q 021545 228 GTIAGLSLGSWLGTL----KAKVHAFSVC 252 (311)
Q Consensus 228 Gt~aGl~~~~~~~~~----~~rVigV~~~ 252 (311)
-++.|+..++++.+. ++.|+|++-.
T Consensus 247 ~~Alg~l~~~~~~g~~vP~disviGfDd~ 275 (333)
T COG1609 247 LMALGALRALRELGLRVPEDLSVIGFDDI 275 (333)
T ss_pred HHHHHHHHHHHHcCCCCCCeeEEEEecCh
Confidence 789999988888764 3678888763
No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=39.66 E-value=1.1e+02 Score=30.52 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=36.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++||..|+ ||.|.-+|..+.++|.+++++.+...... +.....+..++..|.+++.
T Consensus 282 k~VvVIGg--G~va~d~A~~l~r~Ga~Vtlv~r~~~~~m---~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 282 KKVAVVGG--GNVAMDAARTALRLGAEVHIVYRRSEEEL---PARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred CeEEEECC--cHHHHHHHHHHHHcCCEEEEEeecCcccC---CCCHHHHHHHHHcCCEEEe
Confidence 45555676 89999999999999999888876543111 1111223345567777654
No 215
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=39.66 E-value=99 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=27.7
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
.+|+|++..|.-+.+.|+..++- ...||||.+.......
T Consensus 55 ~~~viIa~AG~~a~Lpgvva~~t----~~PVIgvP~~~~~~~g 93 (150)
T PF00731_consen 55 GADVIIAVAGMSAALPGVVASLT----TLPVIGVPVSSGYLGG 93 (150)
T ss_dssp TESEEEEEEESS--HHHHHHHHS----SS-EEEEEE-STTTTT
T ss_pred CCEEEEEECCCcccchhhheecc----CCCEEEeecCcccccC
Confidence 47899999998888999999984 5689999877664433
No 216
>PRK08303 short chain dehydrogenase; Provisional
Probab=39.59 E-value=3.1e+02 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=23.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..||| |++ +--|.++|....+.|.+++++-+.
T Consensus 10 ~~lIT-Ggs-~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 10 VALVA-GAT-RGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred EEEEe-CCC-chHHHHHHHHHHHCCCEEEEEecc
Confidence 34554 554 568999999999999987776554
No 217
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.46 E-value=83 Score=26.78 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=31.5
Q ss_pred CEEEEeCCccchHHHHHHH--HHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAV--AAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~--~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
..+|.|| ..-|-|-++++ .-+..|+++++++-...... ++....++...+.+|.+++..
T Consensus 27 ~v~il~G-~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 27 RVLILCG-PGNNGGDGLVAARHLANRGYNVTVYLVGPPEKL--SEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp EEEEEE--SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSST--SHHHHHHHHHHHHTT-EEESS
T ss_pred eEEEEEC-CCCChHHHHHHHHHHHHCCCeEEEEEEeccccC--CHHHHHHHHHHHhcCCcEeec
Confidence 4455665 44455555544 44458999988553322111 112345677888888666543
No 218
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=39.36 E-value=2.2e+02 Score=24.58 Aligned_cols=98 Identities=16% Similarity=0.053 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCcc-chHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEE
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLI-GNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV 183 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~-~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ 183 (311)
|..+..+++.+|.+.. +..+- ++.. .=+......|..|.+++... +.++++++.+.++-+..-+
T Consensus 13 G~~iv~~~r~~g~~~~----~Rv~G----~dl~~~l~~~~~~~~~~vfllG~~~-------~v~~~~~~~l~~~yP~l~i 77 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQ----SRVAG----PDLMEELCQRAGKEKLPIFLYGGKP-------DVLQQLKVKLIKEYPKLKI 77 (177)
T ss_pred cHHHHHHHHHcCCCCC----CccCh----HHHHHHHHHHHHHcCCeEEEECCCH-------HHHHHHHHHHHHHCCCCEE
Confidence 4678899999986532 12110 0011 11223344677788887531 2345667777776444322
Q ss_pred ec-CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcch
Q 021545 184 IP-VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGG 228 (311)
Q Consensus 184 ip-~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGG 228 (311)
.- .++-++. -..+|.+++.+ ..+|.|+|+.|+--
T Consensus 78 ~g~~g~f~~~-------~~~~i~~~I~~----s~~dil~VglG~Pk 112 (177)
T TIGR00696 78 VGAFGPLEPE-------ERKAALAKIAR----SGAGIVFVGLGCPK 112 (177)
T ss_pred EEECCCCChH-------HHHHHHHHHHH----cCCCEEEEEcCCcH
Confidence 21 2222221 12345555553 35999999999754
No 219
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=39.12 E-value=1.5e+02 Score=27.41 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=30.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHc-----------CCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYL-----------NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~-----------Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.++|.||+.+|.....+ +..++ +=+.+++++.... .......+.+|++++.++-
T Consensus 60 ~~~t~ggt~a~~~al~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~h--------~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLA-ARDRARKRLKAGGGRGIDKLVIVCSDQAH--------VSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHH-HHHHhhhhhhcccccccCCeEEEEcCcch--------hHHHHHHHHHhcCeEEeee
Confidence 56777777777643333 32221 1244666665432 2244566777999988863
No 220
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=39.11 E-value=65 Score=30.48 Aligned_cols=59 Identities=14% Similarity=0.025 Sum_probs=34.4
Q ss_pred CEEEEeCCccc------hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccc---hHHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQS------NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIG---NLLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~G------Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~---n~~~~~~~GAeV~~v~~~ 156 (311)
++|+|+|-|++ ....++-..|++.|.++.+++.+..|. ..| ....+...|-++.++.+.
T Consensus 120 ~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~EsrP~------~~G~~~~a~~L~~~gI~vtlI~Ds 187 (303)
T TIGR00524 120 DTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIACETRPR------NQGSRLTAWELMQDGIDVTLITDS 187 (303)
T ss_pred CEEEEecCCccccccCcchHHHHHHHHHHcCCceEEEECCCCCc------cchHHHHHHHHHHCCCCEEEEChh
Confidence 46777753311 122333345667888888888776643 123 234555678888887653
No 221
>PRK07677 short chain dehydrogenase; Provisional
Probab=39.09 E-value=2.7e+02 Score=24.45 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=22.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.||| |+ +|.-|.++|....+.|.+.+++.+.
T Consensus 4 ~lIt-G~-s~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 4 VIIT-GG-SSGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred EEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3454 54 4679999999999999976666443
No 222
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=39.03 E-value=2.9e+02 Score=26.71 Aligned_cols=11 Identities=9% Similarity=-0.155 Sum_probs=8.0
Q ss_pred CCCeEEEEecc
Q 021545 242 LKAKVHAFSVC 252 (311)
Q Consensus 242 ~~~rVigV~~~ 252 (311)
+..++|+|..-
T Consensus 127 ~~~P~iaIPTT 137 (382)
T cd08187 127 KALPVGTVLTL 137 (382)
T ss_pred CCCCEEEEeCC
Confidence 45788888863
No 223
>PRK09134 short chain dehydrogenase; Provisional
Probab=38.96 E-value=2.7e+02 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=24.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|.-|.++|....+.|.+++++...
T Consensus 11 ~vlIt-Ga-s~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 11 AALVT-GA-ARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred EEEEe-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555 54 5889999999999999988776543
No 224
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.87 E-value=2.6e+02 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|.-|.+++......|.+++++.+.
T Consensus 8 ~vlIt-Ga-sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 8 TALVT-GS-SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred EEEEE-CC-CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 33454 54 4789999999999999998777654
No 225
>PRK07814 short chain dehydrogenase; Provisional
Probab=38.82 E-value=2.7e+02 Score=24.66 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=23.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|--|.++|......|++++++.+.
T Consensus 12 ~vlIt-Ga-sggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 12 VAVVT-GA-GRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred EEEEE-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34554 54 4778999998888899987776553
No 226
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=38.71 E-value=1.4e+02 Score=27.58 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEE
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELI 153 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v 153 (311)
+.+.+|..++ .|--|++++.+|+.+|.+.+++.+.. .+...++.+|++-+..
T Consensus 143 ~~~vlv~~~g-~g~vG~~a~q~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 143 GAKAVVHTAA-ASALGRMLVRLCKADGIKVINIVRRK-----------EQVDLLKKIGAEYVLN 194 (324)
T ss_pred CCcEEEEccC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEEE
Confidence 3344453233 47899999999999999855543321 3566778899975543
No 227
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=38.61 E-value=2.4e+02 Score=26.02 Aligned_cols=43 Identities=7% Similarity=-0.003 Sum_probs=25.2
Q ss_pred hHHHHHHHHhh-CCCCCeEEEEeccCCc-------------hhhHHHHHHhHhhhCC
Q 021545 229 TIAGLSLGSWL-GTLKAKVHAFSVCDDP-------------DYFYDYTQGLLDGLNA 271 (311)
Q Consensus 229 t~aGl~~~~~~-~~~~~rVigV~~~g~~-------------~~~~~~i~~~~~g~~~ 271 (311)
.+..++.+++. +...--|+...=.|+. +.+...+.-++..+|.
T Consensus 122 S~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~ 178 (259)
T COG0623 122 SFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKAALEASVRYLAADLGK 178 (259)
T ss_pred hHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHHHHHHHHHHHHHHHHhCc
Confidence 45666776664 3445566666555552 1245566667777775
No 228
>PLN02743 nicotinamidase
Probab=38.22 E-value=59 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=31.7
Q ss_pred HHHcCCCEEEEeCCccchHHH----HHHHHHHHcCC-----cEEEEEcCC
Q 021545 86 AVAQGADCIITIGGIQSNHCR----AAAVAAKYLNL-----DCYLILRTS 126 (311)
Q Consensus 86 a~~~G~~~vVt~g~s~GNhg~----AlA~~a~~~Gl-----~~~ivv~~~ 126 (311)
..+.|+++||.+| ...|.|. ++|..|..+|+ +++++.+-.
T Consensus 146 Lr~~gI~~liv~G-v~T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~ 194 (239)
T PLN02743 146 VNNNKIKVILVVG-ICTDICVLDFVASALSARNHGILPPLEDVVVYSRGC 194 (239)
T ss_pred HHHCCCCEEEEEE-eCcchhccChHHHHHHHHHcCCCCCCceEEEeCCcc
Confidence 3468999998775 6789999 89999999999 566665443
No 229
>PRK07109 short chain dehydrogenase; Provisional
Probab=38.21 E-value=2.4e+02 Score=26.52 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred HHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeE
Q 021545 141 LVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDI 220 (311)
Q Consensus 141 ~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~i 220 (311)
+.+...|++|+.+.+.. + ..+.+.+++.+.+.+..+++.+-+++..+ ..+..++.+++ +.+|.+
T Consensus 26 ~~la~~G~~Vvl~~R~~-~------~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v---~~~~~~~~~~~------g~iD~l 89 (334)
T PRK07109 26 RAFARRGAKVVLLARGE-E------GLEALAAEIRAAGGEALAVVADVADAEAV---QAAADRAEEEL------GPIDTW 89 (334)
T ss_pred HHHHHCCCEEEEEECCH-H------HHHHHHHHHHHcCCcEEEEEecCCCHHHH---HHHHHHHHHHC------CCCCEE
Confidence 34455799998887632 1 22344445555454555666665565443 34556666655 358999
Q ss_pred EEeCCcc
Q 021545 221 VVACGSG 227 (311)
Q Consensus 221 vv~vGtG 227 (311)
|..+|.+
T Consensus 90 InnAg~~ 96 (334)
T PRK07109 90 VNNAMVT 96 (334)
T ss_pred EECCCcC
Confidence 9998864
No 230
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=37.94 E-value=44 Score=32.28 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=22.1
Q ss_pred EeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 96 TIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 96 t~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
..|+ |..|.+.|..|++.|.+++++=...
T Consensus 4 VIG~--G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 4 VIGG--GLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EE-S--SHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EECC--CHHHHHHHHHHhhhcCeEEEEEeec
Confidence 3465 8999999999999999888885443
No 231
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.93 E-value=49 Score=33.40 Aligned_cols=35 Identities=29% Similarity=0.257 Sum_probs=29.9
Q ss_pred cCCCEEEEeCCc--------------cchHHHHHHHHHHHcCCcEEEEE
Q 021545 89 QGADCIITIGGI--------------QSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 89 ~G~~~vVt~g~s--------------~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
+|.+-|||.|++ +|=.|.++|.+|+.+|-+++++.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 345667887765 89999999999999999999997
No 232
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=37.80 E-value=36 Score=25.82 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=21.6
Q ss_pred EeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 222 VACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 222 v~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
+++|+|..+.-+...+ ..++..+++||+.....
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~ 36 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISPEM 36 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-HHH
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCHHH
Confidence 5789999888888777 44567999999987644
No 233
>PRK07062 short chain dehydrogenase; Provisional
Probab=37.72 E-value=2.9e+02 Score=24.42 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=23.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ ++--|.++|......|.+++++.+.
T Consensus 10 ~~lIt-Ga-s~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 10 VAVVT-GG-SSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 34554 54 4789999999999999987776654
No 234
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=37.69 E-value=1.2e+02 Score=28.06 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=34.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| .|.-|++++.+|+.+|.+.+++.+.. .++..++.+|++-++
T Consensus 165 ~~vlV~g--~g~iG~~~~~~a~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~i 212 (333)
T cd08296 165 DLVAVQG--IGGLGHLAVQYAAKMGFRTVAISRGS-----------DKADLARKLGAHHYI 212 (333)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHCCCeEEEEeCCh-----------HHHHHHHHcCCcEEe
Confidence 5666666 38999999999999999855543321 256677889986443
No 235
>PRK07774 short chain dehydrogenase; Provisional
Probab=37.52 E-value=2.8e+02 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=23.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..||| |+ +|--|.++|......|.+++++.+.
T Consensus 8 ~vlIt-Ga-sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 8 VAIVT-GA-AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 33454 54 4789999999999999987777543
No 236
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=37.26 E-value=2.7e+02 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=36.1
Q ss_pred CEEEEeCCccchHHHHHHHHHH------HcC----CcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAK------YLN----LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~------~~G----l~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
..++|.|||.+|.-.-+|+--+ ..| -+.++|+++... ..-...++.+|-.++.|+.+
T Consensus 105 ~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH--------~S~~Kaa~~lGlg~~~I~~~ 171 (373)
T PF00282_consen 105 GGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH--------YSIEKAARILGLGVRKIPTD 171 (373)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS---------THHHHHHHHTTSEEEEE-BB
T ss_pred ceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc--------cHHHHhcceeeeEEEEecCC
Confidence 4788888888886544433222 223 357888887653 12466788899998888753
No 237
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.17 E-value=2.8e+02 Score=24.04 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=22.7
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
-+|+ |+ +|..|.++|......|.+++++.+.
T Consensus 10 vlVt-G~-sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 10 ALIT-GA-GRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EEEE-cC-CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 3454 54 5789999998888899977776544
No 238
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=37.17 E-value=1.6e+02 Score=25.83 Aligned_cols=49 Identities=20% Similarity=0.031 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+++--|+++|....+.|.++++.-+...... ..-..+.+.+|.+++.++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~------~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLA------DALEELAKEYGAEVIQCD 52 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHH------HHHHHHHHHTTSEEEESC
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHH------HHHHHHHHHcCCceEeec
Confidence 3467888999988899988887765543100 011234555788864443
No 239
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=36.97 E-value=1.2e+02 Score=29.32 Aligned_cols=77 Identities=19% Similarity=0.096 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCEEE---EeCCccchH----HHHHHHHHHHcCCcEEEEE-cCCCcccCCC-----CC-ccchHHHHH
Q 021545 79 LEFLMADAVAQGADCII---TIGGIQSNH----CRAAAVAAKYLNLDCYLIL-RTSKVLVDQD-----PG-LIGNLLVER 144 (311)
Q Consensus 79 l~~ll~~a~~~G~~~vV---t~g~s~GNh----g~AlA~~a~~~Gl~~~ivv-~~~~~~~~~~-----~~-~~~n~~~~~ 144 (311)
+..-+++|++.|++.|. ..|+..-+. ...++..|.++|++.++.+ |......++. |. ...-.+...
T Consensus 148 l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaa 227 (348)
T PRK09250 148 LTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAA 227 (348)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHH
Confidence 33448999999998764 245432222 2356678999999988733 4332211111 11 011134455
Q ss_pred HCCCEEEEEcC
Q 021545 145 LVGAHIELISK 155 (311)
Q Consensus 145 ~~GAeV~~v~~ 155 (311)
.+||+++.+..
T Consensus 228 ELGADIVKv~y 238 (348)
T PRK09250 228 TIGADIIKQKL 238 (348)
T ss_pred HHcCCEEEecC
Confidence 68999999875
No 240
>PRK08226 short chain dehydrogenase; Provisional
Probab=36.96 E-value=2.8e+02 Score=24.37 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=22.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
-||| |+ +|.-|.++|......|.+++++-+
T Consensus 9 ~lIt-G~-s~giG~~la~~l~~~G~~Vv~~~r 38 (263)
T PRK08226 9 ALIT-GA-LQGIGEGIARVFARHGANLILLDI 38 (263)
T ss_pred EEEe-CC-CChHHHHHHHHHHHCCCEEEEecC
Confidence 3454 54 478999999999999998766644
No 241
>PRK13054 lipid kinase; Reviewed
Probab=36.91 E-value=82 Score=29.31 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCCC-eEEEEeccCCchhh
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLKA-KVHAFSVCDDPDYF 258 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~~-rVigV~~~g~~~~~ 258 (311)
+|.|| .+|+=||+..++.++.....+. -.+||-|.|+...+
T Consensus 57 ~d~vv-v~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdf 98 (300)
T PRK13054 57 VATVI-AGGGDGTINEVATALAQLEGDARPALGILPLGTANDF 98 (300)
T ss_pred CCEEE-EECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHH
Confidence 56544 5666677888888876432121 23788888876543
No 242
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=36.82 E-value=77 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCC----EEEEeCCc--cchHHHHHHHHHHHcCCc---EEEEEcCCC
Q 021545 78 KLEFLMADAVAQGAD----CIITIGGI--QSNHCRAAAVAAKYLNLD---CYLILRTSK 127 (311)
Q Consensus 78 kl~~ll~~a~~~G~~----~vVt~g~s--~GNhg~AlA~~a~~~Gl~---~~ivv~~~~ 127 (311)
.+..++..+.+.|.. .+++-||. .=+|..+++-.|+..|++ .|++++.+.
T Consensus 15 ~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD 73 (223)
T PF06415_consen 15 VLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD 73 (223)
T ss_dssp HHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS
T ss_pred HHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC
Confidence 455566666655432 35565654 448999999999999988 688998764
No 243
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=36.78 E-value=2.4e+02 Score=23.27 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=25.9
Q ss_pred eCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 97 IGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 97 ~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.| .+|+.|..++....+.|.+.+++++...
T Consensus 4 ~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 4 FG-ATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp ET-TTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EC-CCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 45 4699999999999999999999998743
No 244
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=36.74 E-value=2.8e+02 Score=24.06 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=32.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.+|| |+ +|--|.++|......|.+++++.+..... ...-...++..|.++..+.-
T Consensus 9 ~lIt-G~-s~~iG~~la~~l~~~g~~v~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 9 AIVT-GG-AKGIGKAITVALAQEGAKVVINYNSSKEA------AENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred EEEE-CC-CCHHHHHHHHHHHHcCCEEEEEcCCcHHH------HHHHHHHHHhcCCeEEEEEC
Confidence 3444 54 57899999998889998876544322110 00112334456777766653
No 245
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=36.71 E-value=62 Score=23.10 Aligned_cols=24 Identities=13% Similarity=-0.086 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcC
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|=.|.+.|+..++.|++++++=..
T Consensus 5 G~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 5 GISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHCCCcEEEEecC
Confidence 667999999999999988888544
No 246
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=36.59 E-value=96 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHcCCCEEEEeCCccchHH-HHHHHHHHHcCCcEEEEEcCCC
Q 021545 87 VAQGADCIITIGGIQSNHC-RAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg-~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.+.|.++||.+|- .+|.| .++|..+..+|++.+++.+-..
T Consensus 106 ~~~~i~~vil~G~-~t~~CV~~T~~~a~~~G~~v~vi~Da~~ 146 (161)
T cd00431 106 RERGIDTLVVCGI-ATDICVLATARDALDLGYRVIVVEDACA 146 (161)
T ss_pred HHCCCCEEEEEec-CcChhHHHHHHHHHHCCCEEEEehhhcc
Confidence 4568899988764 45555 5667777789999888876544
No 247
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=36.57 E-value=60 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.4
Q ss_pred eCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 97 IGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 97 ~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.|+ |..|+++|+.++..|++.+++-+.
T Consensus 5 iGa--G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGA--GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES---SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcC--CHHHHHHHHHHHhCCCcEEEEECC
Confidence 354 899999999999999999999654
No 248
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=36.42 E-value=3.4e+02 Score=24.80 Aligned_cols=155 Identities=8% Similarity=-0.011 Sum_probs=78.4
Q ss_pred HHHHHHHHc-CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC-------Ccc---cCCCCCc--cchHHHHHHCC
Q 021545 81 FLMADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS-------KVL---VDQDPGL--IGNLLVERLVG 147 (311)
Q Consensus 81 ~ll~~a~~~-G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~-------~~~---~~~~~~~--~~n~~~~~~~G 147 (311)
..+.+..++ +++.||.+ .++....+++..+++.+++++.+.... .+. ...+... ..-...+...|
T Consensus 58 ~~~~~l~~~~~v~avig~--~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 135 (336)
T cd06326 58 ANTRKLIEDDKVFALFGY--VGTPTTAAALPLLEEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLG 135 (336)
T ss_pred HHHHHHHhhcCcEEEEeC--CCchhHHHHHHHHHHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhC
Confidence 345555554 77777743 233445667778888999988763221 000 0000000 01122233457
Q ss_pred CE-EEEEcCc-cccccCcHHHHHHHHHHHHHcCCCc-E--EecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Q 021545 148 AH-IELISKE-EYSKIGSVTLTNILKEKLLKEGRRP-Y--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVV 222 (311)
Q Consensus 148 Ae-V~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~-y--~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv 222 (311)
.+ |.++..+ .|. ....+...+.+++.|... . .++.+ ..-+.....+|.+ ..+|.||+
T Consensus 136 ~~~v~~l~~~~~~~----~~~~~~~~~~~~~~G~~~~~~~~~~~~------~~d~~~~~~~l~~--------~~~dav~~ 197 (336)
T cd06326 136 LKRIAVFYQDDAFG----KDGLAGVEKALAARGLKPVATASYERN------TADVAAAVAQLAA--------ARPQAVIM 197 (336)
T ss_pred CceEEEEEecCcch----HHHHHHHHHHHHHcCCCeEEEEeecCC------cccHHHHHHHHHh--------cCCCEEEE
Confidence 64 4444321 121 123334444555544221 1 11211 0112233344432 23788887
Q ss_pred eCCcchhHHHHHHHHhhCCCCCeEEEEeccCCch
Q 021545 223 ACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 256 (311)
Q Consensus 223 ~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~ 256 (311)
.. .+..+.++...+++.+.+.+++++...+...
T Consensus 198 ~~-~~~~a~~~i~~~~~~G~~~~~~~~~~~~~~~ 230 (336)
T cd06326 198 VG-AYKAAAAFIRALRKAGGGAQFYNLSFVGADA 230 (336)
T ss_pred Ec-CcHHHHHHHHHHHhcCCCCcEEEEeccCHHH
Confidence 65 3446788999999999999999887766544
No 249
>PRK07791 short chain dehydrogenase; Provisional
Probab=36.33 E-value=3.3e+02 Score=24.72 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=23.6
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|...||| |+ ++--|+++|....+.|.+.+++..
T Consensus 6 ~k~~lIT-Ga-s~GIG~aia~~la~~G~~vii~~~ 38 (286)
T PRK07791 6 GRVVIVT-GA-GGGIGRAHALAFAAEGARVVVNDI 38 (286)
T ss_pred CCEEEEE-CC-CchHHHHHHHHHHHCCCEEEEeeC
Confidence 3344555 54 467899999999999998777643
No 250
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=36.30 E-value=49 Score=34.51 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=44.3
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhC-CCCCeEEEEeccCCchhhHHHHHHhHhhhCCC----------------CCCCC
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLG-TLKAKVHAFSVCDDPDYFYDYTQGLLDGLNAG----------------VDSRD 277 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~-~~~~rVigV~~~g~~~~~~~~i~~~~~g~~~~----------------~~~~d 277 (311)
..+|+|||..||. ||+++.++. .++++|.-.|+.|++... .++..+...+..+ .-.++
T Consensus 56 ~~yDyIVVGgGtA----GcvlAarLSEn~~~~VLLLEaGg~~~~~-~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~ 130 (623)
T KOG1238|consen 56 SSYDYIVVGGGTA----GCVLAARLSENPNWSVLLLEAGGDPPLY-SDPPLLAANLQLSLYDWSYHTEPSQHACLAMSED 130 (623)
T ss_pred cCCCEEEECCCch----hHHHHHhhccCCCceEEEEecCCCCccc-ccchHHHHHhccccccccCcCccChhhhhhhcCC
Confidence 3699999977775 566666653 688999999999988432 2222333333321 12567
Q ss_pred eEEeccCCccc
Q 021545 278 IVNIQNVSVYM 288 (311)
Q Consensus 278 vv~v~e~~~~~ 288 (311)
.+.++-|++.|
T Consensus 131 ~c~wpRGrVLG 141 (623)
T KOG1238|consen 131 RCYWPRGRVLG 141 (623)
T ss_pred ceecCccceec
Confidence 77888776543
No 251
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=36.12 E-value=3e+02 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=15.6
Q ss_pred eEEEeCCcchhH--HHHHHHHhhCCCCCeEEEEec
Q 021545 219 DIVVACGSGGTI--AGLSLGSWLGTLKAKVHAFSV 251 (311)
Q Consensus 219 ~ivv~vGtGGt~--aGl~~~~~~~~~~~rVigV~~ 251 (311)
.+++++|+|..+ ++.+..... ...+++.|..
T Consensus 83 d~IIavGGGsv~D~aK~iA~~~~--~~~p~i~VPT 115 (344)
T TIGR01357 83 STIIALGGGVVGDLAGFVAATYM--RGIRFIQVPT 115 (344)
T ss_pred CEEEEEcChHHHHHHHHHHHHHc--cCCCEEEecC
Confidence 466777776652 333332222 2345666655
No 252
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=36.10 E-value=2.9e+02 Score=24.04 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHHHHHHc-CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccC--CCC-------C--c--cchHHHHHHCC
Q 021545 82 LMADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVD--QDP-------G--L--IGNLLVERLVG 147 (311)
Q Consensus 82 ll~~a~~~-G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~--~~~-------~--~--~~n~~~~~~~G 147 (311)
.+.++.++ +++.||. ...+....+++..++..+++.+.+......... ..+ . . ..-...++.+|
T Consensus 58 ~~~~l~~~~~v~~iig--~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (299)
T cd04509 58 AARRLCQQEGVDALVG--PVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYN 135 (299)
T ss_pred HHHHHhcccCceEEEc--CCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcC
Confidence 34555555 7887773 333344557788888899998776543221100 001 0 0 11123445566
Q ss_pred CE-EEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Q 021545 148 AH-IELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG 225 (311)
Q Consensus 148 Ae-V~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vG 225 (311)
.+ +..+..+ .+. ....+...+.+++.+-. +........ ....+.....+|.+ ..+|.||+ ++
T Consensus 136 ~~~v~iv~~~~~~~----~~~~~~~~~~~~~~g~~--i~~~~~~~~-~~~~~~~~~~~l~~--------~~~~~v~~-~~ 199 (299)
T cd04509 136 WKKVAILYDDDSYG----RGLLEAFKAAFKKKGGT--VVGEEYYPL-GTTDFTSLLQKLKA--------AKPDVIVL-CG 199 (299)
T ss_pred CcEEEEEecCchHH----HHHHHHHHHHHHHcCCE--EEEEecCCC-CCccHHHHHHHHHh--------cCCCEEEE-cc
Confidence 53 4444322 121 12223334445544422 111100000 00223334444432 23777766 44
Q ss_pred cchhHHHHHHHHhhCCC--CCeEEEEeccCCchh
Q 021545 226 SGGTIAGLSLGSWLGTL--KAKVHAFSVCDDPDY 257 (311)
Q Consensus 226 tGGt~aGl~~~~~~~~~--~~rVigV~~~g~~~~ 257 (311)
.+..+.++...++..+. +..+++.+......+
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~ 233 (299)
T cd04509 200 SGEDAATILKQAAEAGLTGGYPILGITLGLSDVL 233 (299)
T ss_pred cchHHHHHHHHHHHcCCCCCCcEEecccccCHHH
Confidence 55788889999988776 788999888776544
No 253
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=36.07 E-value=72 Score=31.93 Aligned_cols=41 Identities=15% Similarity=-0.119 Sum_probs=29.0
Q ss_pred CeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 218 DDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 218 D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
-+++|++|+|-+..-++.+.+..+...+|++||....+...
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 36677777777776666676666788999999987655443
No 254
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=36.04 E-value=2.2e+02 Score=27.43 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=33.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
+.|+..|+ +|--|.++-..|+.+|. ++++.-.. ..++.+.+.+||+-+.
T Consensus 159 ~~vLv~gg-sggVG~~aiQlAk~~~~-~~v~t~~s----------~e~~~l~k~lGAd~vv 207 (347)
T KOG1198|consen 159 KSVLVLGG-SGGVGTAAIQLAKHAGA-IKVVTACS----------KEKLELVKKLGADEVV 207 (347)
T ss_pred CeEEEEeC-CcHHHHHHHHHHHhcCC-cEEEEEcc----------cchHHHHHHcCCcEee
Confidence 34555554 46789999999999993 33333222 2468999999998654
No 255
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=36.01 E-value=1.4e+02 Score=27.61 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=33.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++.+|+.+|.+-++++.... .+..+++.+|++.++
T Consensus 165 ~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~----------~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSP----------ERLELAKALGADFVI 213 (339)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHhCCCEEE
Confidence 44544553 78999999999999999334443221 356677889986544
No 256
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.96 E-value=58 Score=27.83 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
-++..+.++.+.|++.|| |+ . .+.-+|+++|++++++.+
T Consensus 113 e~~~~i~~~~~~G~~viV--Gg---~---~~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 113 EIEAAIKQAKAEGVDVIV--GG---G---VVCRLARKLGLPGVLIES 151 (176)
T ss_dssp HHHHHHHHHHHTT--EEE--ES---H---HHHHHHHHTTSEEEESS-
T ss_pred HHHHHHHHHHHcCCcEEE--CC---H---HHHHHHHHcCCcEEEEEe
Confidence 456678888999999887 43 1 235677899999877754
No 257
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.83 E-value=3.4e+02 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHcCCcEEEE
Q 021545 103 NHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 103 Nhg~AlA~~a~~~Gl~~~iv 122 (311)
-....+-..|...|++..++
T Consensus 92 dl~~~ll~~~~~~~~~v~ll 111 (243)
T PRK03692 92 DLWEALMARAGKEGTPVFLV 111 (243)
T ss_pred HHHHHHHHHHHhcCCeEEEE
Confidence 34445555555555444444
No 258
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=35.65 E-value=1.2e+02 Score=28.76 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=34.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++..|+.+|.+.++++.... .+...++.+|++.+.
T Consensus 189 ~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~----------~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNP----------SKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 45555653 88999999999999985444443321 357778899997544
No 259
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=35.59 E-value=4e+02 Score=25.48 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=69.2
Q ss_pred HcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc--CCCc--cc---CCCCCccch--HHH-HHHCCCEEEEEcCc-
Q 021545 88 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR--TSKV--LV---DQDPGLIGN--LLV-ERLVGAHIELISKE- 156 (311)
Q Consensus 88 ~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~--~~~~--~~---~~~~~~~~n--~~~-~~~~GAeV~~v~~~- 156 (311)
+.++.-|| |+.+|....+++-.+.+.++.++..-. .... .. -.+...... ... .+.+|.++..+..+
T Consensus 66 ~d~v~~vi--G~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g~~va~l~~d~ 143 (374)
T TIGR03669 66 RDKVDALW--AGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYGKKIYTIAADY 143 (374)
T ss_pred hCCCCEEE--cCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 35677666 556677888888889999887754210 0000 00 000000000 112 23467777666542
Q ss_pred cccccCcHHHHHHHHHHHHHcCCCc---EEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHH
Q 021545 157 EYSKIGSVTLTNILKEKLLKEGRRP---YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGL 233 (311)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~g~~~---y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl 233 (311)
.|.. ...+...+.+++.|... ..+|.+. .-|.....+|.+ ..||.||+.. .|+-...+
T Consensus 144 ~~g~----~~~~~~~~~~~~~G~~vv~~~~~~~g~------~Df~~~l~~i~~--------~~pD~V~~~~-~g~~~~~~ 204 (374)
T TIGR03669 144 NFGQ----LSADWVRVIAKENGAEVVGEEFIPLSV------SQFSSTIQNIQK--------ADPDFVMSML-VGANHASF 204 (374)
T ss_pred HHHH----HHHHHHHHHHHHcCCeEEeEEecCCCc------chHHHHHHHHHH--------cCCCEEEEcC-cCCcHHHH
Confidence 2321 11222333444444332 1223321 122233333322 3589998744 34455667
Q ss_pred HHHHhhCCCCCeEEEE
Q 021545 234 SLGSWLGTLKAKVHAF 249 (311)
Q Consensus 234 ~~~~~~~~~~~rVigV 249 (311)
.+.++..+.+.++++.
T Consensus 205 ~kq~~~~G~~~~~~~~ 220 (374)
T TIGR03669 205 YEQAASANLNLPMGTS 220 (374)
T ss_pred HHHHHHcCCCCcccch
Confidence 8888888887777643
No 260
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=35.31 E-value=31 Score=31.55 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhC-CCCCeEEEEeccCCch
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLG-TLKAKVHAFSVCDDPD 256 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~-~~~~rVigV~~~g~~~ 256 (311)
+|+|||..|+||..+ +.++. .++.+|.-+|..+...
T Consensus 1 yD~iIVGsG~~G~v~----A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVV----ASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHH----HHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHH----HHHHhhCCCCcEEEEEccccCc
Confidence 589999888777553 33332 3567999999887543
No 261
>PRK12744 short chain dehydrogenase; Provisional
Probab=35.29 E-value=3.1e+02 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=22.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
.+|| |+ +|.-|.++|..-...|.+++++..
T Consensus 11 vlIt-Ga-~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 11 VLIA-GG-AKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCcEEEEec
Confidence 3444 54 467999999999999999776654
No 262
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=35.27 E-value=3.7e+02 Score=24.91 Aligned_cols=159 Identities=15% Similarity=0.140 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCccc-CC-------C
Q 021545 62 ERDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLV-DQ-------D 133 (311)
Q Consensus 62 KRedl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~-~~-------~ 133 (311)
.+||-..|..+....|++ + .+.++.-|| |..++-.+.+++-.+.+.++..+.. ....... .+ +
T Consensus 45 ~~D~~~~p~~a~~~~~~L---i---~~~~V~aii--G~~~s~~~~a~~~~~~~~~vp~i~~-~~~~~~~~~~~~F~~~~~ 115 (334)
T cd06356 45 DYDTQSDNERYQQYAQRL---A---LQDKVDVVW--GGISSASREAIRPIMDRTKQLYFYT-TQYEGGVCDRNTFCTGAT 115 (334)
T ss_pred EECCCCCHHHHHHHHHHH---H---HhCCCCEEE--eCcchHHHHHHHHHHHhcCceEEeC-CCccCCcccCCEEEeCCC
Confidence 366665553333444444 2 245777666 4444445677777888888776541 1000000 00 0
Q ss_pred CCc--cchHH-HHHHCCCEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCc---EEecCCCCchhHHHHHHHHHHHHHH
Q 021545 134 PGL--IGNLL-VERLVGAHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRP---YVIPVGGSNSIGTWGYIEAIKEIEQ 206 (311)
Q Consensus 134 ~~~--~~n~~-~~~~~GAeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~---y~ip~g~~n~~~~~Gy~t~a~EI~~ 206 (311)
+.. ..-.. +.+..|-++..+..+ .|.. ...+...+.+++.|... ..+|.+. .-|.. +| .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~vail~~d~~~g~----~~~~~~~~~~~~~G~~vv~~~~~~~~~------~d~~~---~v-~ 181 (334)
T cd06356 116 PAQQFSTLVPYMMEKYGKKVYTIAADYNFGQ----ISAEWVRKIVEENGGEVVGEEFIPLDV------SDFGS---TI-Q 181 (334)
T ss_pred cHHHHHHHHHHHHHccCCeEEEECCCchhhH----HHHHHHHHHHHHcCCEEEeeeecCCCc------hhHHH---HH-H
Confidence 000 00111 233346666655432 2321 12233344455545332 1223221 11222 22 3
Q ss_pred HHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCC-CCeEEE
Q 021545 207 QLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTL-KAKVHA 248 (311)
Q Consensus 207 Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~-~~rVig 248 (311)
++.. ..+|.|++. +.|+-...+.+.++..+. ++++++
T Consensus 182 ~l~~----~~pd~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~ 219 (334)
T cd06356 182 KIQA----AKPDFVMSI-LVGANHLSFYRQWAAAGLGNIPMAS 219 (334)
T ss_pred HHHh----cCCCEEEEe-ccCCcHHHHHHHHHHcCCccCceee
Confidence 3332 358988874 444556678888888777 666655
No 263
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=35.24 E-value=1.2e+02 Score=28.80 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=33.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |.-|++++..|+.+|.+-++++.... .++..++.+|++.++
T Consensus 188 ~~VlV~G-~-G~vG~~a~~~ak~~G~~~vi~~~~~~----------~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVFG-L-GAVGLAVIQGAKAAGASRIIGIDINP----------DKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCCEEE
Confidence 4555555 3 78999999999999995444443321 356777889997544
No 264
>PRK07063 short chain dehydrogenase; Provisional
Probab=35.09 E-value=3.2e+02 Score=24.08 Aligned_cols=31 Identities=19% Similarity=-0.003 Sum_probs=22.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+ +|--|+++|..-...|.+++++.+
T Consensus 9 ~vlVt-Ga-s~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 9 VALVT-GA-AQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34554 54 467889999888899998776654
No 265
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=35.04 E-value=3.7e+02 Score=24.89 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=30.3
Q ss_pred ccCCchhhHHHHHHhHhhhCCCCCCCCeEEeccCCccchHHHHHHHHHhcC
Q 021545 251 VCDDPDYFYDYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILMNG 301 (311)
Q Consensus 251 ~~g~~~~~~~~i~~~~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~~~ 301 (311)
+.|+.. ..+.+..+++.++.. .+.++++-+. +.+.+..++.|.++-+
T Consensus 134 ~gG~~~-~~~~~~~~l~~~~~~--~~~~~~~G~~-G~~~~~K~~~n~l~~~ 180 (298)
T TIGR00872 134 IGGDGE-AFARAEPLFADVAPE--EQGYLYCGPC-GSGHFVKMVHNGIEYG 180 (298)
T ss_pred eCCCHH-HHHHHHHHHHHhcCc--CCCEEEECCc-cHhHHHHHHHHHHHHH
Confidence 344433 345667777777752 1357777664 7888888888877654
No 266
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.97 E-value=2.8e+02 Score=26.30 Aligned_cols=71 Identities=20% Similarity=0.014 Sum_probs=38.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCC-CEEEEEcCccccccCcHHHHHHH
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-AHIELISKEEYSKIGSVTLTNIL 170 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~G-AeV~~v~~~~~~~~~~~~~~~~~ 170 (311)
..+||.| ++-.|+++|.-.+++|-+.+++=-.... ..+....++..| ++-..++=..++ -+.+.
T Consensus 40 ~vLITGg--g~GlGr~ialefa~rg~~~vl~Din~~~-------~~etv~~~~~~g~~~~y~cdis~~e------ei~~~ 104 (300)
T KOG1201|consen 40 IVLITGG--GSGLGRLIALEFAKRGAKLVLWDINKQG-------NEETVKEIRKIGEAKAYTCDISDRE------EIYRL 104 (300)
T ss_pred EEEEeCC--CchHHHHHHHHHHHhCCeEEEEeccccc-------hHHHHHHHHhcCceeEEEecCCCHH------HHHHH
Confidence 4456633 4679999999999999844443221111 123455666667 223333322222 23455
Q ss_pred HHHHHHc
Q 021545 171 KEKLLKE 177 (311)
Q Consensus 171 ~~~l~~~ 177 (311)
+++++++
T Consensus 105 a~~Vk~e 111 (300)
T KOG1201|consen 105 AKKVKKE 111 (300)
T ss_pred HHHHHHh
Confidence 6666665
No 267
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.76 E-value=3.3e+02 Score=24.24 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=20.4
Q ss_pred EEEEeCCccc-hHHHHHHHHHHHcCCcEEEEE
Q 021545 93 CIITIGGIQS-NHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 93 ~vVt~g~s~G-Nhg~AlA~~a~~~Gl~~~ivv 123 (311)
.||| |+++| --|.++|...++.|.++++..
T Consensus 11 ~lIT-Gas~~~GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 11 GLIT-GIANNMSISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred EEEE-CCCCCcchHHHHHHHHHHcCCEEEEEe
Confidence 4555 55432 467888888888999876654
No 268
>PLN03032 serine decarboxylase; Provisional
Probab=34.73 E-value=3.5e+02 Score=26.28 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=32.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.++|.|||-+|.. |+.. ++...-+.+++++.... ......++.+|.++..++.
T Consensus 88 G~fTsGGTEaNl~-al~~-ar~~~~~~~vi~s~~~H--------~Sv~kaa~~lg~~~~~V~~ 140 (374)
T PLN03032 88 GYITTCGTEGNLH-GILV-GREVFPDGILYASRESH--------YSVFKAARMYRMEAVKVPT 140 (374)
T ss_pred EEEeCchHHHHHH-HHHH-HHHhCCCcEEEeCCCce--------eHHHHHHHHcCCCCeEeee
Confidence 4888899999973 3332 22222224677776543 2356678888888777753
No 269
>PRK00861 putative lipid kinase; Reviewed
Probab=34.70 E-value=1e+02 Score=28.61 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=27.2
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
.+|.|+ .+|+=||+..++.++... + ..+||-|.|+...+
T Consensus 57 ~~d~vv-~~GGDGTl~evv~~l~~~--~-~~lgviP~GTgNdf 95 (300)
T PRK00861 57 GAELII-ASGGDGTLSAVAGALIGT--D-IPLGIIPRGTANAF 95 (300)
T ss_pred CCCEEE-EECChHHHHHHHHHHhcC--C-CcEEEEcCCchhHH
Confidence 366554 577778899898888643 2 24888999986543
No 270
>PRK06847 hypothetical protein; Provisional
Probab=34.69 E-value=58 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
.|+..|+ |=.|.++|..+++.|++++++=.
T Consensus 6 ~V~IVGa--G~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 6 KVLIVGG--GIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEec
Confidence 3555565 78899999999999999888843
No 271
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=34.67 E-value=1.2e+02 Score=27.76 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=33.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ .|..|.+++..|+.+|.+.++..+.. .+...++.+|++-+
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v 195 (326)
T cd08289 148 GPVLVTGA-TGGVGSLAVSILAKLGYEVVASTGKA-----------DAADYLKKLGAKEV 195 (326)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCeEEEEecCH-----------HHHHHHHHcCCCEE
Confidence 46665654 57899999999999999865554332 24666678998544
No 272
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=34.64 E-value=1.3e+02 Score=28.15 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=34.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| . |..|++++..|+.+|.+.++++.... .++..++.+|++-++
T Consensus 162 ~~vlV~G-~-g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 162 KNVIIIG-A-GTIGLLAIQCAVALGAKSVTAIDINS----------EKLALAKSLGAMQTF 210 (347)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCceEe
Confidence 4555555 3 78999999999999998655553322 356677889986543
No 273
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=34.29 E-value=2.6e+02 Score=26.73 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=14.1
Q ss_pred chHHHHHHCCCEEEEEc
Q 021545 138 GNLLVERLVGAHIELIS 154 (311)
Q Consensus 138 ~n~~~~~~~GAeV~~v~ 154 (311)
+-....+.+|++++.++
T Consensus 132 ~~~~~~~~~g~~~v~v~ 148 (396)
T PRK09257 132 NHRAIFEAAGLEVKTYP 148 (396)
T ss_pred cHHHHHHHcCCcEEEEe
Confidence 45778889999998886
No 274
>PRK05872 short chain dehydrogenase; Provisional
Probab=34.20 E-value=3.6e+02 Score=24.55 Aligned_cols=31 Identities=13% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+ +|.-|.++|....+.|.+.+++-+
T Consensus 11 ~vlIt-Ga-s~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 11 VVVVT-GA-ARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred EEEEE-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34554 54 478999999999999987666543
No 275
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=34.09 E-value=58 Score=33.30 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=29.5
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
..+|+|||..|++| +..+.++..+..+|+-.|..+..
T Consensus 6 ~~~D~vIVGsG~aG----~~lA~rLs~~g~~VllLEaG~~~ 42 (542)
T COG2303 6 MEYDYVIVGSGSAG----SVLAARLSDAGLSVLVLEAGGPD 42 (542)
T ss_pred CCCCEEEECCCchh----HHHHHHhcCCCCeEEEEeCCCCC
Confidence 46999999888876 45566767889999999998753
No 276
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.07 E-value=3.2e+02 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..+..+.+.+.+.||.. +..++........++..|++.+++-.
T Consensus 46 ~~i~~~~~~~~dgiii~-~~~~~~~~~~l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 46 ENLRTAIDKGVSGIIIS-PTNSSAAVTLLKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHhcCCCEEEEc-CCchhhhHHHHHHHHHCCCCEEEEec
Confidence 45666677889988764 34444444555667788999987753
No 277
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.91 E-value=4.9e+02 Score=25.98 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=86.9
Q ss_pred CchhHHhHHHHHHHHHH-------------cCCCEEEEeCCccc----hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCC
Q 021545 72 SGNKVRKLEFLMADAVA-------------QGADCIITIGGIQS----NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP 134 (311)
Q Consensus 72 ggnK~Rkl~~ll~~a~~-------------~G~~~vVt~g~s~G----Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~ 134 (311)
|-||.|....++.+.+. ++...||.+-|-|| -.|.-+|++-++.|++|-++.-+.--
T Consensus 68 G~nk~r~i~~~vf~eL~kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR------ 141 (483)
T KOG0780|consen 68 GVNKRRIIQKAVFDELVKLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR------ 141 (483)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc------
Confidence 55899887776655432 12235554323333 47889999999999999998865431
Q ss_pred CccchHHHHHHCCCE--EEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCC
Q 021545 135 GLIGNLLVERLVGAH--IELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGT 212 (311)
Q Consensus 135 ~~~~n~~~~~~~GAe--V~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~ 212 (311)
.+-...++.++.+ |-.++ .|.+.+......+-.+++.+++-+..++-..|.+.. -..+..|+.+-...
T Consensus 142 --agAfDQLkqnA~k~~iP~yg--syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~q----e~sLfeEM~~v~~a-- 211 (483)
T KOG0780|consen 142 --AGAFDQLKQNATKARVPFYG--SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQ----EASLFEEMKQVSKA-- 211 (483)
T ss_pred --cchHHHHHHHhHhhCCeeEe--cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhh----hHHHHHHHHHHHhh--
Confidence 2334444444333 33333 244433333334445667766544444433332221 12466676543333
Q ss_pred CCCCCC--eEEEeCCcchhHHHHHHHHhhC
Q 021545 213 GGVKFD--DIVVACGSGGTIAGLSLGSWLG 240 (311)
Q Consensus 213 ~~~~~D--~ivv~vGtGGt~aGl~~~~~~~ 240 (311)
..|| .+|+..+.|-.+.-.+.+|++.
T Consensus 212 --i~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 212 --IKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred --cCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 3466 4567888888888899999863
No 278
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=33.82 E-value=2.1e+02 Score=25.24 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=33.4
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
|...+|| |+ +|.-|.++|....+.|.+++++-.... ......++.+|.++..+.
T Consensus 10 ~k~~lIt-G~-~~gIG~a~a~~l~~~G~~vv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 10 GKVAVVT-GC-DTGLGQGMALGLAEAGCDIVGINIVEP---------TETIEQVTALGRRFLSLT 63 (253)
T ss_pred CCEEEEE-CC-CchHHHHHHHHHHHCCCEEEEecCcch---------HHHHHHHHhcCCeEEEEE
Confidence 3344554 54 579999999999999998776522211 122344555676766554
No 279
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.73 E-value=3.1e+02 Score=23.53 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=33.8
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
+++..|+ +|.-|..+|......|.+++++.+..... ..-...++..|.++..+.-
T Consensus 7 ~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 7 TALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAA-------EALAAELRAAGGEARVLVF 61 (246)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHH-------HHHHHHHHhcCCceEEEEc
Confidence 3444454 58999999999999999976665442210 1112334456777766543
No 280
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=33.51 E-value=3.4e+02 Score=23.92 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc--------ccCCCCCccchHH--HHHHC
Q 021545 77 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV--------LVDQDPGLIGNLL--VERLV 146 (311)
Q Consensus 77 Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~--------~~~~~~~~~~n~~--~~~~~ 146 (311)
.+-...+..+.+++.+.||..+ ...+.....-..+...|++++++-+.... .+..+....++.. .+...
T Consensus 42 ~~~~~~i~~l~~~~vdgiIi~~-~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~ 120 (273)
T cd06309 42 ENQISAIRSFIAQGVDVIILAP-VVETGWDPVLKEAKAAGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKA 120 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEcC-CccccchHHHHHHHHCCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHH
Confidence 3444567777888899888643 33343333445567889999888654211 0100100011111 12222
Q ss_pred --CC-EEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021545 147 --GA-HIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 223 (311)
Q Consensus 147 --GA-eV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~ 223 (311)
|. ++..+... ........+.+...+.+++.+ ...+......+.....++ ....++.++-+ ..+|.||+.
T Consensus 121 ~~g~~~i~~i~~~-~~~~~~~~R~~Gf~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-----~~~~aI~~~ 192 (273)
T cd06309 121 TGGKGNIVELQGT-VGSSVAIDRKKGFAEVIKKYP-NMKIVASQTGDFTRAKGK-EVMEALLKAHG-----DDIDAVYAH 192 (273)
T ss_pred cCCCceEEEEeCC-CCCchHHHHHHHHHHHHHHCC-CCEEeeccCCcccHHHHH-HHHHHHHHhCC-----CCccEEEEC
Confidence 43 45455321 111111122333444555432 222221111111112233 23445544321 148888765
Q ss_pred CCcchhHHHHHHHHhhCCC----CCeEEEEecc
Q 021545 224 CGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 252 (311)
Q Consensus 224 vGtGGt~aGl~~~~~~~~~----~~rVigV~~~ 252 (311)
+..++.|+..+++..+. ++.|+|++-.
T Consensus 193 --~d~~a~g~~~a~~~~g~~ip~di~iig~d~~ 223 (273)
T cd06309 193 --NDEMALGAIQAIKAAGKKPGKDIKIVSIDGT 223 (273)
T ss_pred --CcHHHHHHHHHHHHcCCCCCCCeEEEecCCC
Confidence 33456688898887764 4678887553
No 281
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=33.47 E-value=1.2e+02 Score=28.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=33.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |--|++++..|+.+|.+-++++... ..++.+++.+|++.++
T Consensus 193 ~~VlV~G-~-G~vG~~a~~lak~~G~~~Vi~~~~~----------~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 193 QSVAVVG-L-GGVGLSALLGAVAAGASQVVAVDLN----------EDKLALARELGATATV 241 (371)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCcEEEEcCC----------HHHHHHHHHcCCceEe
Confidence 4555455 3 7899999999999999644544332 1357778889997543
No 282
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=33.46 E-value=4.1e+02 Score=24.95 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcccCCCCC-ccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHc-CCCcEEe
Q 021545 107 AAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE-GRRPYVI 184 (311)
Q Consensus 107 AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~-~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~-g~~~y~i 184 (311)
++.+.|+++|++.+-++... +..++++. ...-+..++..+..+++++.. +.. +. ++.++++ +-+...+
T Consensus 212 af~Yf~~~ygl~~~~~~~~~-~~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~~----~~----~~~la~e~g~~v~~l 281 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVN-PEIQPGAQRLHEIRTQLVEQKATCVFAEPQ-FRP----AV----IESVAKGTSVRMGTL 281 (311)
T ss_pred hHHHHHHhCCCceeeeeccC-CCCCCCHHHHHHHHHHHHHcCCCEEEecCC-CCh----HH----HHHHHHhcCCeEEEe
Confidence 88999999999987655322 11112221 223356777889999998763 321 22 3334433 3233333
Q ss_pred -cCCCCchhHHHHHHHHHHHHHHHHh
Q 021545 185 -PVGGSNSIGTWGYIEAIKEIEQQLQ 209 (311)
Q Consensus 185 -p~g~~n~~~~~Gy~t~a~EI~~Q~~ 209 (311)
|.+.........|..+..+..+++.
T Consensus 282 dpl~~~~~~~~~~Y~~~m~~n~~~l~ 307 (311)
T PRK09545 282 DPLGTNIKLGKDSYSEFLSQLANQYA 307 (311)
T ss_pred ccccccccCCHhHHHHHHHHHHHHHH
Confidence 4432211112567777777777664
No 283
>PRK06197 short chain dehydrogenase; Provisional
Probab=33.38 E-value=3.8e+02 Score=24.47 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|--|.++|..-.+.|.+++++.+.
T Consensus 18 ~vlIt-Ga-s~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 18 VAVVT-GA-NTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred EEEEc-CC-CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 34444 54 4678888888888889887777654
No 284
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=33.26 E-value=2.4e+02 Score=27.23 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 168 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 168 ~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
+++.+.+++.+-...++..-..||.- ....|+.+++.+ ..+| +|+++|+|..
T Consensus 48 ~~v~~~L~~~g~~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIaiGGGS~ 99 (382)
T PRK10624 48 AKVTDVLDAAGLAYEIYDGVKPNPTI-----EVVKEGVEVFKA----SGAD-YLIAIGGGSP 99 (382)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCChHH
Confidence 44455565544332222222234431 233444454443 2466 5778888765
No 285
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=33.21 E-value=1e+02 Score=29.07 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=33.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHH-HCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVER-LVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~-~~GAeV~~ 152 (311)
++|+..|+ +|--|++++..|+.+|.+.+.+.+. ..+...++ .+|++-+.
T Consensus 160 ~~VlV~Ga-aG~vG~~aiqlAk~~G~~Vi~~~~~-----------~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 160 DSVFVSAA-SGAVGQLVGQLAKLHGCYVVGSAGS-----------SQKVDLLKNKLGFDEAF 209 (348)
T ss_pred CEEEEecC-ccHHHHHHHHHHHHcCCEEEEEcCC-----------HHHHHHHHHhcCCCEEE
Confidence 45655554 4789999999999999985444322 13566666 69997544
No 286
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.09 E-value=2e+02 Score=25.84 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 150 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV 150 (311)
++|+.+|+ .|..|++++..|+.+|.+.+.+.+.. .+...++.+|+..
T Consensus 134 ~~vli~g~-~~~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~ 180 (305)
T cd08270 134 RRVLVTGA-SGGVGRFAVQLAALAGAHVVAVVGSP-----------ARAEGLRELGAAE 180 (305)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcE
Confidence 55665654 47899999999999999855554321 2466677799863
No 287
>PRK07985 oxidoreductase; Provisional
Probab=33.07 E-value=3.8e+02 Score=24.46 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=22.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
..||| |+ +|.-|.++|....+.|.+++++.
T Consensus 51 ~vlIT-Ga-s~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 51 KALVT-GG-DSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred EEEEE-CC-CCcHHHHHHHHHHHCCCEEEEec
Confidence 44555 54 47899999999999999877654
No 288
>PLN02740 Alcohol dehydrogenase-like
Probab=33.02 E-value=1.4e+02 Score=28.62 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=34.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++.+|+.+|.+-++++.... .++.+++.+|++.++
T Consensus 200 ~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~----------~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 200 SSVAIFGL--GAVGLAVAEGARARGASKIIGVDINP----------EKFEKGKEMGITDFI 248 (381)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCCh----------HHHHHHHHcCCcEEE
Confidence 45555653 88999999999999985444443221 357778889997543
No 289
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=32.76 E-value=1.6e+02 Score=27.52 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=35.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+. +++ |..|++++..|+.+|.+.++++.... .+...++.+|++.++
T Consensus 176 ~~vlI-~g~-g~vG~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGA-GPLGLGMIGAARLKNPKKLIVLDLKD----------ERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECC-CHHHHHHHHHHHHcCCcEEEEEcCCH----------HHHHHHHHcCCcEEe
Confidence 45555 444 88999999999999988776665432 356677889986543
No 290
>PRK06172 short chain dehydrogenase; Provisional
Probab=32.52 E-value=3.4e+02 Score=23.70 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=34.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
+++..|+ +|.-|.++|....+.|.+++++.+..... ..-...++..|.++..+.-
T Consensus 9 ~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK06172 9 VALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGG-------EETVALIREAGGEALFVAC 63 (253)
T ss_pred EEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHH-------HHHHHHHHhcCCceEEEEc
Confidence 3443454 57899999999999999877776543210 1123344556777765543
No 291
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.51 E-value=3.5e+02 Score=23.81 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
|...+|| |+ +|.-|.++|..-...|.+++++.+.... ......+...|.++..+.
T Consensus 15 ~k~vlIt-Ga-s~gIG~~ia~~l~~~G~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 69 (258)
T PRK06935 15 GKVAIVT-GG-NTGLGQGYAVALAKAGADIIITTHGTNW--------DETRRLIEKEGRKVTFVQ 69 (258)
T ss_pred CCEEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeCCcHH--------HHHHHHHHhcCCceEEEE
Confidence 3344554 54 4789999999999999998888765210 111233445676665554
No 292
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.44 E-value=3.7e+02 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=23.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
++..|+ +|.-|.++|......|.+++++.+.
T Consensus 7 vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 7 ILITGC-SSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred EEEeCC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 333454 5899999999999999988777654
No 293
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.38 E-value=1.6e+02 Score=25.70 Aligned_cols=44 Identities=9% Similarity=-0.116 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHc---CC----CEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 77 RKLEFLMADAVAQ---GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 77 Rkl~~ll~~a~~~---G~----~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
|+..+.++++.+. +. ++++..|. ||.|..+|.....+|.+.+++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~--G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGL--GKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCEEEEE
Confidence 5556666666554 22 45655664 899999999999999987743
No 294
>PRK13018 cell division protein FtsZ; Provisional
Probab=32.20 E-value=87 Score=30.65 Aligned_cols=46 Identities=26% Similarity=0.196 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCC-cchhHHHHHHHH----hhCCCCCeEEEEeccC
Q 021545 200 AIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCD 253 (311)
Q Consensus 200 ~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~~~~----~~~~~~~rVigV~~~g 253 (311)
...||.+++. ..|.||+..| +|||=+|.+..+ ++.+ ..+++|-+..
T Consensus 102 ~~d~I~~~le------~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~P 152 (378)
T PRK13018 102 SRDEIKEVLK------GADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTKP 152 (378)
T ss_pred HHHHHHHHhc------CCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEcC
Confidence 3445655553 4788888877 445655655433 4433 4566665554
No 295
>PRK05599 hypothetical protein; Provisional
Probab=32.12 E-value=2.7e+02 Score=24.54 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+|| |+ ++.-|.++|..-. .|.+++++-+
T Consensus 4 lIt-Ga-s~GIG~aia~~l~-~g~~Vil~~r 31 (246)
T PRK05599 4 LIL-GG-TSDIAGEIATLLC-HGEDVVLAAR 31 (246)
T ss_pred EEE-eC-ccHHHHHHHHHHh-CCCEEEEEeC
Confidence 444 54 4678888888776 4877666644
No 296
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.02 E-value=4.7e+02 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
..|+.+++.+ ..+| +|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~d-~IIaiGGGS~ 95 (374)
T cd08189 72 VEAGLALYRE----NGCD-AILAVGGGSV 95 (374)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCccH
Confidence 3455555543 3465 5677887665
No 297
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=31.94 E-value=59 Score=31.99 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|.+|| |=.|.+.|.+|++.|.++.++=+..
T Consensus 3 VVvGg--G~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 3 VVVGG--GPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEE----SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEECc--cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 33565 6689999999999999999986554
No 298
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=31.93 E-value=67 Score=29.34 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=26.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.+|+.+|+ |.-++++|..|+.+|++++++=+.
T Consensus 101 ~~L~IfGa--G~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 101 PHVVLFGA--GHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CEEEEECC--cHHHHHHHHHHhcCCCEEEEEeCC
Confidence 56777886 889999999999999999987443
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=31.91 E-value=1.4e+02 Score=28.41 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=33.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |--|++++.+|+.+|.+-++.+... ..++..++.+||+.+.
T Consensus 187 ~~VlV~G-~-G~iG~~a~q~Ak~~G~~~Vi~~~~~----------~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVFG-L-GGIGLSVIQGARMAKASRIIAIDIN----------PAKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEcCC----------HHHHHHHHHhCCCeEE
Confidence 4555455 3 7899999999999999544444322 1357777889996543
No 300
>PRK13337 putative lipid kinase; Reviewed
Probab=31.65 E-value=1.2e+02 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=25.7
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchh
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY 257 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~ 257 (311)
+|. ++.+|+=||+..++.++.....+ ..+||-|.|+...
T Consensus 58 ~d~-vvv~GGDGTl~~vv~gl~~~~~~-~~lgiiP~GT~Nd 96 (304)
T PRK13337 58 FDL-VIAAGGDGTLNEVVNGIAEKENR-PKLGIIPVGTTND 96 (304)
T ss_pred CCE-EEEEcCCCHHHHHHHHHhhCCCC-CcEEEECCcCHhH
Confidence 565 55666667788888887643222 3588888887643
No 301
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=31.62 E-value=3.6e+02 Score=23.65 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 021545 142 VERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 221 (311)
Q Consensus 142 ~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~iv 221 (311)
.+...|++|+.+.+... ..+.+.+.+.+.+.+..+++.+-.|+.. ...+..++.++. +.+|.||
T Consensus 29 ~l~~~G~~V~~~~r~~~-------~~~~~~~~i~~~~~~~~~~~~D~~~~~~---~~~~~~~~~~~~------~~~d~li 92 (255)
T PRK07523 29 GLAQAGAEVILNGRDPA-------KLAAAAESLKGQGLSAHALAFDVTDHDA---VRAAIDAFEAEI------GPIDILV 92 (255)
T ss_pred HHHHcCCEEEEEeCCHH-------HHHHHHHHHHhcCceEEEEEccCCCHHH---HHHHHHHHHHhc------CCCCEEE
Confidence 34446999988766321 1133344454444344556555555443 334555665554 3699999
Q ss_pred EeCCcc
Q 021545 222 VACGSG 227 (311)
Q Consensus 222 v~vGtG 227 (311)
...|.+
T Consensus 93 ~~ag~~ 98 (255)
T PRK07523 93 NNAGMQ 98 (255)
T ss_pred ECCCCC
Confidence 999865
No 302
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=31.57 E-value=3.5e+02 Score=26.34 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCc--EEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh--HHHHHHHHhhCC
Q 021545 168 NILKEKLLKEGRRP--YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT--IAGLSLGSWLGT 241 (311)
Q Consensus 168 ~~~~~~l~~~g~~~--y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt--~aGl~~~~~~~~ 241 (311)
+.+...+.+.+... +.+|.|... -...-+. +|++++-+. +..-+..+++.|+|.. ++|.+++-+.+|
T Consensus 50 ~~~~~~l~~~g~~v~~~~lp~GE~~-Ksl~~~~----~i~~~ll~~--~~~R~s~iialGGGvigDlaGF~Aaty~RG 120 (360)
T COG0337 50 EKLLATLEAAGVEVDSIVLPDGEEY-KSLETLE----KIYDALLEA--GLDRKSTLIALGGGVIGDLAGFAAATYMRG 120 (360)
T ss_pred HHHHHHHHhcCCeeeEEEeCCCccc-ccHHHHH----HHHHHHHHc--CCCCCcEEEEECChHHHHHHHHHHHHHHcC
Confidence 44455565555443 668876432 2233443 444444321 2345678889998865 788888887654
No 303
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=31.47 E-value=2e+02 Score=26.10 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=32.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+|+..|+ .|--|++++..|+.+|.+.+++.+... +...++.+|++-+
T Consensus 141 ~~vlI~g~-~g~ig~~~~~~a~~~G~~v~~~~~~~~-----------~~~~~~~~g~~~~ 188 (324)
T cd08292 141 QWLIQNAA-GGAVGKLVAMLAAARGINVINLVRRDA-----------GVAELRALGIGPV 188 (324)
T ss_pred CEEEEccc-ccHHHHHHHHHHHHCCCeEEEEecCHH-----------HHHHHHhcCCCEE
Confidence 45555554 478999999999999998766654432 3445566787543
No 304
>PRK07201 short chain dehydrogenase; Provisional
Probab=31.42 E-value=4.4e+02 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.0
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+++..|+ +|.-|.++|..-.+.|.+.+++.+.
T Consensus 373 ~vlItGa-s~giG~~la~~l~~~G~~V~~~~r~ 404 (657)
T PRK07201 373 VVLITGA-SSGIGRATAIKVAEAGATVFLVARN 404 (657)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3443454 4789999998888889887776654
No 305
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=31.39 E-value=1.6e+02 Score=28.56 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=34.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ |--|++++.+|+.+|.+.+++.... ..++.+.+.+|++.+
T Consensus 187 ~~VlV~G~--G~iG~~aiqlAk~~Ga~~vi~~d~~----------~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYIAGA--GPVGLAAAASAQLLGAAVVIVGDLN----------PARLAQARSFGCETV 234 (393)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCceEEEeCCC----------HHHHHHHHHcCCeEE
Confidence 45544443 7899999999999999877654332 136788889999853
No 306
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.17 E-value=3.5e+02 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=23.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.-+|+ |+ +|.-|.++|......|.+++++.+.
T Consensus 7 ~vlIt-Ga-sg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 7 VAIVT-GA-SSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred EEEEE-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 33454 54 5899999999999999997777654
No 307
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=31.09 E-value=2.5e+02 Score=26.68 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=47.0
Q ss_pred chhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCc--EEEEEcCCCcccCCCCCccchHHHHHHCCCEE
Q 021545 73 GNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLD--CYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 150 (311)
Q Consensus 73 gnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~--~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV 150 (311)
|-+.+.++.-+.+- -|...+|.+ ++|..+.-+|..+ +|++ -.|++|.-+. ......+...|+++
T Consensus 24 g~~~~~fE~~~a~~--~g~~~~~~~--~sgt~Al~~al~~--l~~~~gdeVi~p~~t~--------~~~~~ai~~~G~~p 89 (363)
T PF01041_consen 24 GPYVEEFEKEFAEY--FGVKYAVAV--SSGTSALHLALRA--LGLGPGDEVIVPAYTF--------PATASAILWAGAEP 89 (363)
T ss_dssp SHHHHHHHHHHHHH--HTSSEEEEE--SSHHHHHHHHHHH--TTGGTTSEEEEESSS---------THHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHH--hCCCeEEEe--CChhHHHHHHHHh--cCCCcCceEecCCCcc--------hHHHHHHHHhccEE
Confidence 66677777666553 467778876 3467777777777 5655 6777776553 35688899999999
Q ss_pred EEEcC
Q 021545 151 ELISK 155 (311)
Q Consensus 151 ~~v~~ 155 (311)
++++-
T Consensus 90 v~~Di 94 (363)
T PF01041_consen 90 VFVDI 94 (363)
T ss_dssp EEE-B
T ss_pred EEEec
Confidence 99974
No 308
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=31.07 E-value=3e+02 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
..|+.+++.+ .++| .|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~D-~IIaiGGGs~ 95 (376)
T cd08193 72 VEAAVEAARA----AGAD-GVIGFGGGSS 95 (376)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCchH
Confidence 3455555543 3466 5678888775
No 309
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.97 E-value=4.5e+02 Score=24.65 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=27.9
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 89 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 89 ~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
+|...||| | +||--|.++|+.=++.|.+.+++++...
T Consensus 11 ~~kvVvIT-G-ASsGIG~~lA~~la~~G~~l~lvar~~r 47 (282)
T KOG1205|consen 11 AGKVVLIT-G-ASSGIGEALAYELAKRGAKLVLVARRAR 47 (282)
T ss_pred CCCEEEEe-C-CCcHHHHHHHHHHHhCCCceEEeehhhh
Confidence 34334444 5 4567899999999999999999987653
No 310
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=30.90 E-value=3.5e+02 Score=23.31 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.4
Q ss_pred hhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 74 NKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 74 nK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|-++.++-.+++|.+.|.+++|.. |++|-+++-++-... -.++.++|..+
T Consensus 11 NT~~tle~a~erA~elgik~~vVA-S~tG~tA~k~lemve-g~lkvVvVthh 60 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVA-SSTGYTALKALEMVE-GDLKVVVVTHH 60 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEE-ecccHHHHHHHHhcc-cCceEEEEEee
Confidence 778899999999999999998865 566776654433322 23777777644
No 311
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=30.88 E-value=2.7e+02 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=33.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ .|-.|++++.+|+.+|.+.+++.+.. .+...++.+|++-+
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGA-TGGVGSIAVAILAKLGYTVVALTGKE-----------EQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEE
Confidence 45665654 57899999999999999855444322 24556678998644
No 312
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.74 E-value=3.5e+02 Score=23.32 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=33.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+++..|+ +|.-|.++|....+.|.+.+++.+..... ......++..+.++..+.
T Consensus 8 ~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~-------~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 8 VALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDA-------AATAELVEAAGGKARARQ 61 (251)
T ss_pred EEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHH-------HHHHHHHHhcCCeEEEEE
Confidence 3443454 58999999999999999877776543210 112333455676765554
No 313
>PRK06182 short chain dehydrogenase; Validated
Probab=30.67 E-value=3.9e+02 Score=23.78 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
++..|+ +|--|+++|......|.+++++.+.
T Consensus 6 vlItGa-sggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 6 ALVTGA-SSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred EEEECC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 333454 4779999999999999988877654
No 314
>PRK14057 epimerase; Provisional
Probab=30.52 E-value=2.4e+02 Score=26.09 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=34.7
Q ss_pred HcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEec
Q 021545 114 YLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIP 185 (311)
Q Consensus 114 ~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip 185 (311)
..|+++.|-++.... ..|+..+...||+++..+..-|...+..+.++.+.+.+...|+ ..++|
T Consensus 189 ~~~~~~~IeVDGGI~--------~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~~~~~-~~~~~ 251 (254)
T PRK14057 189 DKREGKIIVIDGSLT--------QDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAMFKVAGD-TTFLP 251 (254)
T ss_pred hcCCCceEEEECCCC--------HHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHhhcCC-cccCC
Confidence 456777777777763 2467777778888777775444322223334444433333343 33444
No 315
>PRK09242 tropinone reductase; Provisional
Probab=30.50 E-value=3.7e+02 Score=23.54 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHc--CCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE--GRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF 217 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~--g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~ 217 (311)
...+...|++|+.+.+.. +..+++.+++.+. +.+.+++..+-+++..... +..++.+++ +.+
T Consensus 26 a~~l~~~G~~v~~~~r~~-------~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~---~~~~~~~~~------g~i 89 (257)
T PRK09242 26 AREFLGLGADVLIVARDA-------DALAQARDELAEEFPEREVHGLAADVSDDEDRRA---ILDWVEDHW------DGL 89 (257)
T ss_pred HHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHH---HHHHHHHHc------CCC
Q ss_pred CeEEEeCCcc
Q 021545 218 DDIVVACGSG 227 (311)
Q Consensus 218 D~ivv~vGtG 227 (311)
|+||...|.+
T Consensus 90 d~li~~ag~~ 99 (257)
T PRK09242 90 HILVNNAGGN 99 (257)
T ss_pred CEEEECCCCC
No 316
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.49 E-value=1.6e+02 Score=25.62 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCeEEEEeccCCchhh--------HHH--HHHhHhhhCC---CCCCCCeEEeccCCccchHHHHHHH
Q 021545 231 AGLSLGSWLGTLKAKVHAFSVCDDPDYF--------YDY--TQGLLDGLNA---GVDSRDIVNIQNVSVYMTFKNILMN 296 (311)
Q Consensus 231 aGl~~~~~~~~~~~rVigV~~~g~~~~~--------~~~--i~~~~~g~~~---~~~~~dvv~v~e~~~~~~~~~~~~~ 296 (311)
..++.++...+...-.+.+.+.=-+..+ .+. ...-+..+|. +-.+||||.-.+.|+.+|=-+||+.
T Consensus 118 ~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~~TIGnD~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTPAYMLA~ 196 (217)
T COG3155 118 KALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLRLTIGNDIDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTPAYMLAQ 196 (217)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHcCCceeEEecCCccHHHHHHHhCcccCCCCccceeecCCCceecChHHHHHH
Confidence 3455666655555555555544222111 011 1113445555 4568999999999999999999974
No 317
>PLN02834 3-dehydroquinate synthase
Probab=30.43 E-value=4.6e+02 Score=26.10 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEE----ecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCC--e
Q 021545 146 VGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYV----IPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFD--D 219 (311)
Q Consensus 146 ~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~----ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D--~ 219 (311)
+|-++.++.+..-.+. +.+.+.+.+++.+-...+ +|.+-.++.- ....++++++.+ ..+| .
T Consensus 99 ~g~rvlIVtD~~v~~~----~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl-----~~v~~~~~~l~~----~~~dr~~ 165 (433)
T PLN02834 99 HGKRVLVVTNETVAPL----YLEKVVEALTAKGPELTVESVILPDGEKYKDM-----ETLMKVFDKALE----SRLDRRC 165 (433)
T ss_pred CCCEEEEEECccHHHH----HHHHHHHHHHhcCCceEEEEEEecCCcCCCCH-----HHHHHHHHHHHh----cCCCcCc
Q ss_pred EEEeCCcchh--HHHHHHHHhhCCCCCeEEEEec
Q 021545 220 IVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 251 (311)
Q Consensus 220 ivv~vGtGGt--~aGl~~~~~~~~~~~rVigV~~ 251 (311)
+|+++|+|.. ++|.+...+. ..+++|.|..
T Consensus 166 ~VIAiGGGsv~D~ak~~A~~y~--rgiplI~VPT 197 (433)
T PLN02834 166 TFVALGGGVIGDMCGFAAASYQ--RGVNFVQIPT 197 (433)
T ss_pred EEEEECChHHHHHHHHHHHHhc--CCCCEEEECC
No 318
>PRK07326 short chain dehydrogenase; Provisional
Probab=30.38 E-value=3.5e+02 Score=23.22 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=22.9
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
++..|+ +|.-|.++|......|.+++++.+
T Consensus 9 ilItGa-tg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 9 ALITGG-SKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred EEEECC-CCcHHHHHHHHHHHCCCEEEEeeC
Confidence 443454 589999999999999999777654
No 319
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.35 E-value=1.5e+02 Score=26.71 Aligned_cols=49 Identities=24% Similarity=0.207 Sum_probs=34.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|..|++++..|+.+|.+.+++.+.. .+...++.+|++-++
T Consensus 144 ~~vlV~ga-~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 144 DTLLIRGG-TSSVGLAALKLAKALGATVTATTRSP-----------ERAALLKELGADEVV 192 (320)
T ss_pred CEEEEEcC-CChHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHhcCCcEEE
Confidence 45665654 58899999999999999965554332 245556778986443
No 320
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=30.34 E-value=79 Score=31.04 Aligned_cols=27 Identities=26% Similarity=0.015 Sum_probs=23.3
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|+|-.|.++|..+...|.+++++....
T Consensus 209 SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 209 SSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 578899999999999999999887443
No 321
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.30 E-value=4.2e+02 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=24.0
Q ss_pred CCCEEEEeCCc-cchHHHHHHHHHHHcCCcEEEEEc
Q 021545 90 GADCIITIGGI-QSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 90 G~~~vVt~g~s-~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|...||| |++ ++--|+++|....+.|.++++.-+
T Consensus 5 ~k~~lIt-Gas~~~GIG~aiA~~la~~G~~Vil~~r 39 (274)
T PRK08415 5 GKKGLIV-GVANNKSIAYGIAKACFEQGAELAFTYL 39 (274)
T ss_pred CcEEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence 3344555 554 356899999999999998777644
No 322
>PRK06114 short chain dehydrogenase; Provisional
Probab=30.26 E-value=3.6e+02 Score=23.71 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
...+...|++|+.+.+...... +...+++.+.+.+..+++.+-.++....- +..++.++. +.+|.
T Consensus 25 a~~l~~~G~~v~~~~r~~~~~~------~~~~~~l~~~~~~~~~~~~D~~~~~~i~~---~~~~~~~~~------g~id~ 89 (254)
T PRK06114 25 AIGLAQAGADVALFDLRTDDGL------AETAEHIEAAGRRAIQIAADVTSKADLRA---AVARTEAEL------GALTL 89 (254)
T ss_pred HHHHHHCCCEEEEEeCCcchHH------HHHHHHHHhcCCceEEEEcCCCCHHHHHH---HHHHHHHHc------CCCCE
Q ss_pred EEEeCC
Q 021545 220 IVVACG 225 (311)
Q Consensus 220 ivv~vG 225 (311)
||...|
T Consensus 90 li~~ag 95 (254)
T PRK06114 90 AVNAAG 95 (254)
T ss_pred EEECCC
No 323
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=30.25 E-value=1.2e+02 Score=29.46 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCc
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
..++-..|+..|..+++|+.+..|
T Consensus 180 al~vi~~A~~~gk~~~V~v~EtRP 203 (356)
T PRK08334 180 VGAVLRVMHKDGTLKLLWVDETRP 203 (356)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCc
Confidence 444444566666666666665543
No 324
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=30.19 E-value=3.7e+02 Score=23.38 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=32.4
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
++..|+ +|--|.++|....+.|.+.+++-+.... .......++..|.++..+.
T Consensus 3 ~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~-------~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEET-------AKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHHHHhcCCeEEEEE
Confidence 333454 4789999999999999987666543211 0112334556677776554
No 325
>PRK07035 short chain dehydrogenase; Provisional
Probab=30.14 E-value=3.7e+02 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..+|| |+ +|.-|.++|....+.|.+++++-+.
T Consensus 10 ~vlIt-Ga-s~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 10 IALVT-GA-SRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred EEEEE-CC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34554 54 4789999999999999987777543
No 326
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=30.12 E-value=2.9e+02 Score=26.29 Aligned_cols=16 Identities=6% Similarity=-0.060 Sum_probs=7.0
Q ss_pred HHHHHHHcCCcEEEEE
Q 021545 108 AAVAAKYLNLDCYLIL 123 (311)
Q Consensus 108 lA~~a~~~Gl~~~ivv 123 (311)
+.-.++.+|-++.+|.
T Consensus 14 l~~~~~~~g~~~liv~ 29 (349)
T cd08550 14 IAAILSTFGSKVAVVG 29 (349)
T ss_pred HHHHHHHcCCeEEEEE
Confidence 3444444554443433
No 327
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.93 E-value=2.1e+02 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ .|..|++++.+|+.+|.+.+++.+.. +...++.+|++.+
T Consensus 179 ~~vlI~g~-~g~ig~~~~~~a~~~g~~vi~~~~~~------------~~~~~~~~g~~~~ 225 (350)
T cd08274 179 ETVLVTGA-SGGVGSALVQLAKRRGAIVIAVAGAA------------KEEAVRALGADTV 225 (350)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCch------------hhHHHHhcCCeEE
Confidence 45555554 58899999999999999965554321 3455677998743
No 328
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.91 E-value=3.7e+02 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.009 Sum_probs=25.3
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCC----CCeEEEEec
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 251 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~----~~rVigV~~ 251 (311)
.+|.||++ +..++.|+..+++..+. ++.|+|++-
T Consensus 178 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 215 (267)
T cd06283 178 KKTAIFAA--NGLILLEVLKALKELGIRIPEDVGLIGFDD 215 (267)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEEeCC
Confidence 58898886 45567789999987764 567787774
No 329
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.87 E-value=3.4e+02 Score=23.64 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=32.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
++..|+ +|.-|.++|..-...|.+.+++.+...+. .......++..+.++..+.
T Consensus 5 vlItG~-sg~iG~~la~~L~~~g~~vi~~~r~~~~~------~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 5 ALVTGG-RRGIGLGIARALAAAGFDLAINDRPDDEE------LAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEeCC-CchHHHHHHHHHHHCCCEEEEEecCchhH------HHHHHHHHHhcCCceEEEE
Confidence 333354 58999999999999999887776543211 0112333444566665554
No 330
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=29.83 E-value=1.8e+02 Score=24.49 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.|+..|+ ||.|.+.|.++..+|.+.+++- .. ..++...+.+++..+.+.
T Consensus 22 ~vvv~G~--G~vg~gA~~~~~~lGa~v~~~d-~~----------~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGA--GRVGQGAAEIAKGLGAEVVVPD-ER----------PERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEEST--SHHHHHHHHHHHHTT-EEEEEE-SS----------HHHHHHHHHTTTEESEET
T ss_pred EEEEECC--CHHHHHHHHHHhHCCCEEEecc-CC----------HHHHHhhhcccCceEEEc
Confidence 3444454 9999999999999999876663 22 135666778898877774
No 331
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=29.80 E-value=3e+02 Score=26.38 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
..|+.++..+ .++|. |+++|+|..
T Consensus 70 v~~~~~~~~~----~~~d~-IIaiGGGSv 93 (370)
T cd08192 70 VEAGLAAYRA----GGCDG-VIAFGGGSA 93 (370)
T ss_pred HHHHHHHHHh----cCCCE-EEEeCCchH
Confidence 3455555543 34655 677888765
No 332
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=29.79 E-value=2.1e+02 Score=26.71 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=33.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| . |..|++++..|+.+|.+.++++.... .+..+++.+|++.++
T Consensus 174 ~~vlI~g-~-g~vG~~a~q~a~~~G~~~v~~~~~~~----------~~~~~~~~~ga~~~i 222 (351)
T cd08233 174 DTALVLG-A-GPIGLLTILALKAAGASKIIVSEPSE----------ARRELAEELGATIVL 222 (351)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHhCCCEEE
Confidence 4555555 3 78999999999999996555553321 356667778997654
No 333
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.72 E-value=2.6e+02 Score=26.74 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
..++.+++.+ ..+| +|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~D-~IIavGGGSv 95 (357)
T cd08181 72 IMEAVEIAKK----FNAD-FVIGIGGGSP 95 (357)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCchH
Confidence 3455555543 2354 5667887664
No 334
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=29.56 E-value=5.6e+02 Score=25.28 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=70.6
Q ss_pred EeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCC--C--------C-c--cchHHHHHHCCCE-EEEE-cCccccc
Q 021545 96 TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQD--P--------G-L--IGNLLVERLVGAH-IELI-SKEEYSK 160 (311)
Q Consensus 96 t~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~--~--------~-~--~~n~~~~~~~GAe-V~~v-~~~~~~~ 160 (311)
..|+.+|....++|-++..++++.+-+........+.. | . . ..-..+++.+|.+ |..+ .+++|..
T Consensus 109 VIG~~~S~~s~ava~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~yG~ 188 (458)
T cd06375 109 VIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 188 (458)
T ss_pred EEcCCCchHHHHHHHHhhhccccceeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCchHHH
Confidence 34778888999999999999999876643321100000 1 0 0 1223456678877 3332 3334432
Q ss_pred cCcHHHHHHHHHHHHHcCCCc---EEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHH
Q 021545 161 IGSVTLTNILKEKLLKEGRRP---YVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGS 237 (311)
Q Consensus 161 ~~~~~~~~~~~~~l~~~g~~~---y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~ 237 (311)
..++.+.+.+++.+-.. ..+|... +. .-+..+..+|..+ ..+|+||+.. ....+.-+....
T Consensus 189 ----~~~~~~~~~~~~~gi~i~~~~~i~~~~-~~---~d~~~~l~~l~~~-------~~a~vVvl~~-~~~~~~~ll~~a 252 (458)
T cd06375 189 ----TGIEAFEQEARLRNICIATSEKVGRSA-DR---KSYDSVIRKLLQK-------PNARVVVLFT-RSEDARELLAAA 252 (458)
T ss_pred ----HHHHHHHHHHHHCCeeEEEEEEecCCC-CH---HHHHHHHHHHhcc-------CCCEEEEEec-ChHHHHHHHHHH
Confidence 12344444454433111 0123221 11 1122222233211 2477776644 456666677777
Q ss_pred hhCCCCCeEEEEeccC
Q 021545 238 WLGTLKAKVHAFSVCD 253 (311)
Q Consensus 238 ~~~~~~~rVigV~~~g 253 (311)
+..+.....||-+...
T Consensus 253 ~~~g~~~~wigs~~~~ 268 (458)
T cd06375 253 KRLNASFTWVASDGWG 268 (458)
T ss_pred HHcCCcEEEEEecccc
Confidence 7766665566655544
No 335
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.52 E-value=1.5e+02 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=32.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCC-cEEEEEcCCCcccCCCCCccchHHHHHH-CCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl-~~~ivv~~~~~~~~~~~~~~~n~~~~~~-~GAeV~~ 152 (311)
++|+..|+ +|--|+++...|+.+|. +.+++.+.. .+...++. +|++-+.
T Consensus 156 ~~VlI~ga-~g~vG~~aiqlAk~~G~~~Vi~~~~s~-----------~~~~~~~~~lGa~~vi 206 (345)
T cd08293 156 QTMVVSGA-AGACGSLAGQIGRLLGCSRVVGICGSD-----------EKCQLLKSELGFDAAI 206 (345)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCCEEEEEcCCH-----------HHHHHHHHhcCCcEEE
Confidence 56665654 47889999999999998 455443321 24555554 9997544
No 336
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=29.49 E-value=2.1e+02 Score=22.45 Aligned_cols=45 Identities=27% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCC
Q 021545 199 EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 199 t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~ 254 (311)
..+.++.++++ ...|++.+-||.|+--++.+ .|+..|++|.....
T Consensus 6 ~aa~~~A~~~~-------ak~Ivv~T~sG~ta~~isk~----RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 6 RAAVELAEDLN-------AKAIVVFTESGRTARLISKY----RPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHHT-------ESEEEEE-SSSHHHHHHHHT-----TSSEEEEEESSHH
T ss_pred HHHHHHHHhcC-------CCEEEEECCCchHHHHHHhh----CCCCeEEEEcCcHH
Confidence 34567777764 67899999999887655553 48889998887644
No 337
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=29.42 E-value=3.9e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=20.9
Q ss_pred CCeEEEeCCc----chhHHHHHHHHhhCCCCCeEEEEeccCC
Q 021545 217 FDDIVVACGS----GGTIAGLSLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 217 ~D~ivv~vGt----GGt~aGl~~~~~~~~~~~rVigV~~~g~ 254 (311)
+|+|+++..+ |..+++...+.-..+.-..++.++..+.
T Consensus 109 p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~~ 150 (202)
T cd01714 109 VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEGG 150 (202)
T ss_pred CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeCC
Confidence 6666666554 5555555444444445556666655543
No 338
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=29.35 E-value=1.6e+02 Score=27.87 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=40.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
++|+|.+ .|-....+=..|+..|-++.+|+-+..|.. +-......++-+|-+++++.+.
T Consensus 121 ~~IlTh~--~S~~v~~~l~~A~~~~k~~~V~VtESRP~~----eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 121 DVILTHS--FSKTVLEVLKTAADRGKRFKVIVTESRPRG----EGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CEEEEec--CcHHHHHHHHHhhhcCCceEEEEEcCCCcc----hHHHHHHHHHHcCCceEEEech
Confidence 6778875 455677777888888888888887766431 1122355677788888777653
No 339
>PRK05854 short chain dehydrogenase; Provisional
Probab=29.35 E-value=4.6e+02 Score=24.21 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=22.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..||| |+ +|--|.++|..-.+.|.+++++.+.
T Consensus 16 ~~lIT-Ga-s~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 16 RAVVT-GA-SDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred EEEEe-CC-CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 34554 54 3678888888888889887777654
No 340
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=29.28 E-value=1.7e+02 Score=28.18 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCc
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSN 190 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n 190 (311)
....+.+||+|..|+.+ +.+. .-++.+.+.+++..++.+++-.+.+.
T Consensus 108 ~D~~~r~ga~V~~v~~~-~G~~---~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEAD-IGQA---VPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred HHHHHhhCceeeEEecC-cccC---ccHHHHHHHHHhcCCceEEEEecCcc
Confidence 66788899999999753 4322 22355667777776777777766543
No 341
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=29.18 E-value=3.7e+02 Score=23.23 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
.+.+...|++|+.+.+..... .++.+.+.+.+.+..+++.+-.+...... +..|+.++. +.+|+
T Consensus 20 a~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~------~~~d~ 83 (250)
T TIGR03206 20 CRRFAEEGAKVAVFDLNREAA-------EKVAADIRAKGGNAQAFACDITDRDSVDT---AVAAAEQAL------GPVDV 83 (250)
T ss_pred HHHHHHCCCEEEEecCCHHHH-------HHHHHHHHhcCCcEEEEEcCCCCHHHHHH---HHHHHHHHc------CCCCE
Q ss_pred EEEeCC
Q 021545 220 IVVACG 225 (311)
Q Consensus 220 ivv~vG 225 (311)
+|...|
T Consensus 84 vi~~ag 89 (250)
T TIGR03206 84 LVNNAG 89 (250)
T ss_pred EEECCC
No 342
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.14 E-value=3.1e+02 Score=25.62 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=31.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
.+++..|. |+.|+++|..++.+|.+.+++-+.. ......+.+|++.+
T Consensus 153 ~kvlViG~--G~iG~~~a~~L~~~Ga~V~v~~r~~-----------~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGF--GRTGMTLARTLKALGANVTVGARKS-----------AHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECC--cHHHHHHHHHHHHCCCEEEEEECCH-----------HHHHHHHHcCCeee
Confidence 34444563 8899999999999998666654331 13455667887643
No 343
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=29.01 E-value=3.9e+02 Score=23.24 Aligned_cols=159 Identities=20% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccC-CCC-------C--c--cchHHHHHHCC-
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVD-QDP-------G--L--IGNLLVERLVG- 147 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~-~~~-------~--~--~~n~~~~~~~G- 147 (311)
..+.++++++++.|| |...+....+++-.+...|++.+.+......... ..+ . . ..-...+...|
T Consensus 57 ~~~~~l~~~~v~~ii--g~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (298)
T cd06268 57 AAARELVDDGVDAVI--GPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGK 134 (298)
T ss_pred HHHHHHHhCCceEEE--cCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcC
Confidence 345556667887776 3333455567888999999988765432211000 000 0 0 11123344444
Q ss_pred -CEEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Q 021545 148 -AHIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG 225 (311)
Q Consensus 148 -AeV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vG 225 (311)
.++..+... .+. ....+...+.+++.+.+. ......+.. ..-+.....+|.+ ..+|.|++. +
T Consensus 135 ~~~i~~v~~~~~~~----~~~~~~~~~~~~~~g~~i--~~~~~~~~~-~~~~~~~~~~l~~--------~~~~~vi~~-~ 198 (298)
T cd06268 135 VKKVAIIYDDYAYG----RGLAAAFREALKKLGGEV--VAEETYPPG-ATDFSPLIAKLKA--------AGPDAVFLA-G 198 (298)
T ss_pred CCEEEEEEcCCchh----HHHHHHHHHHHHHcCCEE--EEEeccCCC-CccHHHHHHHHHh--------cCCCEEEEc-c
Confidence 456555432 221 122344444555544221 111100000 0112233334432 247777665 5
Q ss_pred cchhHHHHHHHHhhCCCCCeEEEEeccCCchh
Q 021545 226 SGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY 257 (311)
Q Consensus 226 tGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~ 257 (311)
.+..+.++...++..+.+.++++.+.......
T Consensus 199 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 230 (298)
T cd06268 199 YGGDAALFLKQAREAGLKVPIVGGDGAAAPAL 230 (298)
T ss_pred ccchHHHHHHHHHHcCCCCcEEecCccCCHHH
Confidence 55778889999998888889998887766543
No 344
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=28.92 E-value=2.1e+02 Score=26.96 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcC-CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCE-EEEEcC
Q 021545 79 LEFLMADAVAQG-ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAH-IELISK 155 (311)
Q Consensus 79 l~~ll~~a~~~G-~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAe-V~~v~~ 155 (311)
+..++.++..-. .++|+.+ ++.|--|..+...|+..|-..+...... +|....+.+|++ ++..+.
T Consensus 134 Ay~ll~e~y~vkpGhtVlvh-aAAGGVGlll~Ql~ra~~a~tI~~asTa-----------eK~~~akenG~~h~I~y~~ 200 (336)
T KOG1197|consen 134 AYMLLFEAYNVKPGHTVLVH-AAAGGVGLLLCQLLRAVGAHTIATASTA-----------EKHEIAKENGAEHPIDYST 200 (336)
T ss_pred HHHHHHHhcCCCCCCEEEEE-eccccHHHHHHHHHHhcCcEEEEEeccH-----------HHHHHHHhcCCcceeeccc
Confidence 344455543211 2556555 3457889999999999998887776543 478888999998 444443
No 345
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.87 E-value=3.6e+02 Score=23.51 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
...+...|++|+.+.+... ..++..+++.+.+.+..++..+-+++.... .+..++.++. +.+|+
T Consensus 24 a~~l~~~G~~v~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~------~~~d~ 87 (262)
T PRK13394 24 ALELARAGAAVAIADLNQD-------GANAVADEINKAGGKAIGVAMDVTNEDAVN---AGIDKVAERF------GSVDI 87 (262)
T ss_pred HHHHHHCCCeEEEEeCChH-------HHHHHHHHHHhcCceEEEEECCCCCHHHHH---HHHHHHHHHc------CCCCE
Confidence 3345567999988876421 113334445444444455555444444332 3444555443 35899
Q ss_pred EEEeCCcc
Q 021545 220 IVVACGSG 227 (311)
Q Consensus 220 ivv~vGtG 227 (311)
||...|..
T Consensus 88 vi~~ag~~ 95 (262)
T PRK13394 88 LVSNAGIQ 95 (262)
T ss_pred EEECCccC
Confidence 99988864
No 346
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=28.81 E-value=2.3e+02 Score=24.97 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCCCeEEEeCC-cchhHHHHHH----HHhhCCCCCeEEEEeccCCch-hhHHHHHHhH--hhhCCCCCCCCeEEeccCCc
Q 021545 215 VKFDDIVVACG-SGGTIAGLSL----GSWLGTLKAKVHAFSVCDDPD-YFYDYTQGLL--DGLNAGVDSRDIVNIQNVSV 286 (311)
Q Consensus 215 ~~~D~ivv~vG-tGGt~aGl~~----~~~~~~~~~rVigV~~~g~~~-~~~~~i~~~~--~g~~~~~~~~dvv~v~e~~~ 286 (311)
..+|.+++..| +|||=+|+.. .+++..|+..++++.+..... ...+..+.++ ..+ ....|-++.+++.+.
T Consensus 122 d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~e~~~~~~Na~~~l~~l--~~~~d~~i~~dN~~l 199 (216)
T PF00091_consen 122 DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSSEGVVEPYNALLSLSEL--QEYADSVILFDNDAL 199 (216)
T ss_dssp TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGGGSHHHHHHHHHHHHHH--HHTSSEEEEEEHHHH
T ss_pred cccccceecccccceeccccccccchhhhccccccceeeccccccccccccccceehhHHHHH--HHhCCEEEEEcHHHH
Confidence 35777666555 4455555544 445566778888887776642 1222222211 111 123566677766554
Q ss_pred cc
Q 021545 287 YM 288 (311)
Q Consensus 287 ~~ 288 (311)
..
T Consensus 200 ~~ 201 (216)
T PF00091_consen 200 YK 201 (216)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 347
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=28.80 E-value=1.7e+02 Score=28.14 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=32.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++.+|+.+|.+.+++.+... .+..+++.+|++.+.
T Consensus 180 ~~VlV~G~--G~vG~~avq~Ak~~Ga~Vi~~~~~~~----------~~~~~a~~lGa~~~i 228 (375)
T PLN02178 180 KRLGVNGL--GGLGHIAVKIGKAFGLRVTVISRSSE----------KEREAIDRLGADSFL 228 (375)
T ss_pred CEEEEEcc--cHHHHHHHHHHHHcCCeEEEEeCChH----------HhHHHHHhCCCcEEE
Confidence 55655553 78999999999999998555433221 125566789997543
No 348
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=28.79 E-value=3.8e+02 Score=23.55 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
...+...|++|+.+.+..... +...+.+...+.+..+++.+-+++..... +..++.++. +.+|.
T Consensus 29 a~~l~~~G~~V~~~~r~~~~~-------~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~---~~~~~~~~~------~~id~ 92 (259)
T PRK08213 29 AEALGEAGARVVLSARKAEEL-------EEAAAHLEALGIDALWIAADVADEADIER---LAEETLERF------GHVDI 92 (259)
T ss_pred HHHHHHcCCEEEEEeCCHHHH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHH---HHHHHHHHh------CCCCE
Q ss_pred EEEeCC
Q 021545 220 IVVACG 225 (311)
Q Consensus 220 ivv~vG 225 (311)
||...|
T Consensus 93 vi~~ag 98 (259)
T PRK08213 93 LVNNAG 98 (259)
T ss_pred EEECCC
No 349
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=28.50 E-value=4.4e+02 Score=23.73 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=75.1
Q ss_pred HhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCC-CccchH--------HHHHHC-
Q 021545 77 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDP-GLIGNL--------LVERLV- 146 (311)
Q Consensus 77 Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~-~~~~n~--------~~~~~~- 146 (311)
.+....+..+++++++.||..+ ............++..|++++++-....+...... ....|. .+++.+
T Consensus 43 ~~q~~~i~~l~~~~vdgiIi~~-~~~~~~~~~l~~~~~~giPvV~~~~~~~~~~~~~~v~~~Dn~~~g~~aa~~l~~~l~ 121 (302)
T TIGR02637 43 EGQIEVVNSLIAQKVDAIAISA-NDPDALVPALKKAMKRGIKVVTWDSGVAPEGRNLFLNQASADLIGRTQVQLAAEQIG 121 (302)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC-CChHHHHHHHHHHHHCCCEEEEeCCCCCCCceeEEEecCCHHHHHHHHHHHHHHHcC
Confidence 3444567888889999888653 22222223334467789998877533211000000 001121 233333
Q ss_pred -CCEEEEEcCccccccCcHHHHHHHHHHHHHcC-CCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Q 021545 147 -GAHIELISKEEYSKIGSVTLTNILKEKLLKEG-RRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVAC 224 (311)
Q Consensus 147 -GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g-~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~v 224 (311)
+.+|..+.... .......+.+...+.+++.+ +...++.....+...-.++ ....+++++ ..++|.||++.
T Consensus 122 ~~~~I~~i~g~~-~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~------~~~~~ai~~~~ 193 (302)
T TIGR02637 122 NGGEIAILSAAS-TATNQNAWIEIMKKELKDPKYPKVKLVATVYGDDDAQKSY-QEAQGLLKS------YPNLKGIIAPT 193 (302)
T ss_pred CCcEEEEEECCC-CCccHHHHHHHHHHHHhhccCCCCEEEeeecCCchHHHHH-HHHHHHHHh------CCCccEEEeCC
Confidence 23665554221 11111122233333343321 2222221111122222333 233444433 14589999854
Q ss_pred CcchhHHHHHHHHhhCCC--CCeEEEEe
Q 021545 225 GSGGTIAGLSLGSWLGTL--KAKVHAFS 250 (311)
Q Consensus 225 GtGGt~aGl~~~~~~~~~--~~rVigV~ 250 (311)
...+.|+..++++.+. ++.|+|++
T Consensus 194 --d~~a~ga~~al~~~g~~~~i~vvg~d 219 (302)
T TIGR02637 194 --TVGIKAAAQAVSDAKLIGKVKLTGLG 219 (302)
T ss_pred --CchHHHHHHHHHhcCCCCCEEEEEcC
Confidence 4456778888887664 56666665
No 350
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.41 E-value=1.4e+02 Score=25.81 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=29.8
Q ss_pred HcCCCEEEEeCCccchHHH-HHHHHHHHcCCcEEEEEcCCCc
Q 021545 88 AQGADCIITIGGIQSNHCR-AAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 88 ~~G~~~vVt~g~s~GNhg~-AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
++|+++|+.+| ...++|. ++|.-|..+|++++++.+-..+
T Consensus 130 ~~~i~~l~v~G-~~td~CV~~T~~~A~~~gy~v~v~~da~~~ 170 (205)
T COG1335 130 NLGIDTVVVCG-IATDICVLATARDAFDLGYQVTLVEDATAG 170 (205)
T ss_pred HCCCCEEEEee-eehhHHHHHHHHHHHHCCCeEEEehhhccc
Confidence 47999999876 5677876 4556666699999998866543
No 351
>CHL00194 ycf39 Ycf39; Provisional
Probab=28.33 E-value=1.8e+02 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=25.1
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|+..|+ +|.-|..++......|++++++.+..
T Consensus 3 IlVtGa-tG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 3 LLVIGA-TGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred EEEECC-CcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 333454 58999999999999999999888753
No 352
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.32 E-value=4e+02 Score=23.23 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=26.9
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhCC----CCCeEEEEecc
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLGT----LKAKVHAFSVC 252 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~~----~~~rVigV~~~ 252 (311)
..+++||+ .+...+.|+..++++.+ .++.|+|++-.
T Consensus 171 ~~~~ai~~--~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 210 (263)
T cd06280 171 ERPEALVA--SNGLLLLGALRAVRAAGLRIPQDLALAGFDND 210 (263)
T ss_pred CCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCcEEEEEeCCh
Confidence 35888877 56677889999998876 36678877763
No 353
>PRK08017 oxidoreductase; Provisional
Probab=28.29 E-value=2.1e+02 Score=24.98 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=32.1
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
++..|+ +|--|.++|....+.|.+.+++.+.. .++..++..|++.+.++
T Consensus 5 vlVtGa-sg~IG~~la~~l~~~g~~v~~~~r~~-----------~~~~~~~~~~~~~~~~D 53 (256)
T PRK08017 5 VLITGC-SSGIGLEAALELKRRGYRVLAACRKP-----------DDVARMNSLGFTGILLD 53 (256)
T ss_pred EEEECC-CChHHHHHHHHHHHCCCEEEEEeCCH-----------HHhHHHHhCCCeEEEee
Confidence 443454 57899999999999999876665432 13444555677665543
No 354
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=28.26 E-value=3.4e+02 Score=26.47 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=8.5
Q ss_pred CCCeEEEeCCcchh
Q 021545 216 KFDDIVVACGSGGT 229 (311)
Q Consensus 216 ~~D~ivv~vGtGGt 229 (311)
.+| +|+++|+|..
T Consensus 106 ~~D-~IiavGGGS~ 118 (395)
T PRK15454 106 GCD-GVIAFGGGSV 118 (395)
T ss_pred CcC-EEEEeCChHH
Confidence 455 4677887765
No 355
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=28.26 E-value=1.9e+02 Score=27.23 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=33.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++.+|+.+|.+.++++.... .+..+++.+|++-++
T Consensus 178 ~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~----------~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 178 DSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDD----------RKLEWAREFGATHTV 226 (358)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCH----------HHHHHHHHcCCceEE
Confidence 45554553 77899999999999997555553321 357778889996443
No 356
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.26 E-value=4e+02 Score=23.21 Aligned_cols=69 Identities=7% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 021545 142 VERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 221 (311)
Q Consensus 142 ~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~iv 221 (311)
.+...|++|+.+.+.. + ..+++.+.+.+.+.+..++..+-.+... ...+..++.++. +++|.||
T Consensus 26 ~l~~~G~~v~~~~r~~-~------~~~~~~~~~~~~~~~~~~~~~D~~~~~~---i~~~~~~~~~~~------g~id~li 89 (253)
T PRK06172 26 AFAREGAKVVVADRDA-A------GGEETVALIREAGGEALFVACDVTRDAE---VKALVEQTIAAY------GRLDYAF 89 (253)
T ss_pred HHHHcCCEEEEEeCCH-H------HHHHHHHHHHhcCCceEEEEcCCCCHHH---HHHHHHHHHHHh------CCCCEEE
Confidence 3445699999887642 1 1133344454444445556555555443 234555565554 3689999
Q ss_pred EeCCc
Q 021545 222 VACGS 226 (311)
Q Consensus 222 v~vGt 226 (311)
...|.
T Consensus 90 ~~ag~ 94 (253)
T PRK06172 90 NNAGI 94 (253)
T ss_pred ECCCC
Confidence 98885
No 357
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.14 E-value=4.5e+02 Score=25.15 Aligned_cols=40 Identities=8% Similarity=-0.128 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 105 CRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 105 g~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
-..+.-+|+.+|+.+..-.-+.. -+.++..+|.+++.++.
T Consensus 78 ~~~L~~~~~~~Gi~~~stpfd~~-----------svd~l~~~~v~~~KIaS 117 (329)
T TIGR03569 78 HRELKEYCESKGIEFLSTPFDLE-----------SADFLEDLGVPRFKIPS 117 (329)
T ss_pred HHHHHHHHHHhCCcEEEEeCCHH-----------HHHHHHhcCCCEEEECc
Confidence 45666777777776654332221 25555666777666654
No 358
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=28.11 E-value=84 Score=28.30 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=23.2
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
||..|| |-.|.+.|..++++|++++++=+
T Consensus 3 vvIIG~--G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 3 VIIIGA--GPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCEEEEec
Confidence 333565 78999999999999999887764
No 359
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=28.09 E-value=2.3e+02 Score=27.34 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCC-C-EEEEEcCccccccCcHHHHHHHHHHHHHcCC
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVG-A-HIELISKEEYSKIGSVTLTNILKEKLLKEGR 179 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~G-A-eV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~ 179 (311)
|-++..+.-.|+.-|++.++|....... .-+.|+ | +++++++ |.+. .-.+.+++|.+.
T Consensus 26 SHSaL~Il~GAK~EGF~Ti~v~~~gr~~------------~Y~~f~~a~e~i~v~~--f~di----l~~~iqe~L~~~-- 85 (361)
T COG1759 26 SHSALQILDGAKEEGFRTIAVCQRGREK------------PYEKFPVADEVIIVDK--FSDI----LNEEIQEELREL-- 85 (361)
T ss_pred cchHHHHhhhHHhcCCcEEEEEecCccc------------hHHhhchhheEEEech--hHHH----hhHHHHHHHHHc--
Confidence 4568899999999999999999865431 111222 2 7888875 5431 113445666653
Q ss_pred CcEEecCC
Q 021545 180 RPYVIPVG 187 (311)
Q Consensus 180 ~~y~ip~g 187 (311)
+..+||.+
T Consensus 86 n~I~IP~g 93 (361)
T COG1759 86 NAIFIPHG 93 (361)
T ss_pred CeEEecCC
Confidence 57888876
No 360
>PRK06753 hypothetical protein; Provisional
Probab=28.06 E-value=86 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=23.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..|| |=.|.++|...++.|++++|+=..
T Consensus 3 V~IvGg--G~aGl~~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 3 IAIIGA--GIGGLTAAALLQEQGHEVKVFEKN 32 (373)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444565 788999999999999998877433
No 361
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.95 E-value=4.2e+02 Score=23.32 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=22.4
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
+...+|| |++++.-|.++|......|.+.+++
T Consensus 17 ~k~vlIt-G~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 17 GKVVLVT-AAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred CCEEEEE-CCCcccHHHHHHHHHHHcCCEEEEE
Confidence 3344555 5553468999999999999985554
No 362
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=27.92 E-value=1.7e+02 Score=26.64 Aligned_cols=49 Identities=14% Similarity=0.046 Sum_probs=34.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| ..|..|++++..|+.+|.+.+++.+.. .+...++.+|++.+.
T Consensus 142 ~~vlI~g-a~g~~g~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 142 QSVLIHA-GASGVGTAAAQLAEKYGAATIITTSSE-----------EKVDFCKKLAAIILI 190 (334)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHcCCEEEEEeCCH-----------HHHHHHHHcCCcEEE
Confidence 4555555 358999999999999999876654322 245556679986443
No 363
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=27.91 E-value=1.9e+02 Score=27.38 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=32.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |.-|++++..|+.+|.+.+++..... .+..+.+.+|++.+.
T Consensus 185 ~~VlV~G-~-G~vG~~avq~Ak~~Ga~vi~~~~~~~----------~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 185 KHLGVAG-L-GGLGHVAVKIGKAFGLKVTVISSSSN----------KEDEAINRLGADSFL 233 (360)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHCCCEEEEEeCCcc----------hhhhHHHhCCCcEEE
Confidence 4555454 3 88999999999999998555433221 124456779997544
No 364
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=27.87 E-value=5.3e+02 Score=24.41 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=22.5
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
+|...|+ |+.|.++|+.++..|+.-+++++-
T Consensus 8 KI~IIGa--G~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 8 KISLIGS--GNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4554564 899999999999999833555544
No 365
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.85 E-value=3.8e+02 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=17.9
Q ss_pred eEEEeCCcchh--HHHHHHHHhhCCCCCeEEEEecc
Q 021545 219 DIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSVC 252 (311)
Q Consensus 219 ~ivv~vGtGGt--~aGl~~~~~~~~~~~rVigV~~~ 252 (311)
.+++++|+|.. ++|.+...+ .+.++.|.|..-
T Consensus 101 ~~IIalGGG~v~D~ag~vA~~~--~rGip~I~IPTT 134 (369)
T cd08198 101 SYVIAIGGGAVLDAVGYAAATA--HRGVRLIRIPTT 134 (369)
T ss_pred cEEEEECChHHHHHHHHHHHHh--cCCCCEEEECCC
Confidence 46677777665 555555543 234555655543
No 366
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=27.82 E-value=1.6e+02 Score=28.09 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=34.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|-.|++++.+|+.+|.+.+++.+.. .+...++.+|++.++
T Consensus 195 ~~vlV~ga-~g~iG~a~~~lak~~G~~vv~~~~s~-----------~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGA-SGGLGSMAIQLARAAGANPVAVVSSE-----------EKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCCeEEEEeCCH-----------HHHHHHHHcCCCEEE
Confidence 45655554 57899999999999999976654321 256677789987543
No 367
>PRK06194 hypothetical protein; Provisional
Probab=27.77 E-value=4.4e+02 Score=23.51 Aligned_cols=73 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
...+...|++|+.+.+.. ...++..+++...+.+..++..+-++...... +..++.++. +.+|.
T Consensus 23 a~~l~~~G~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~---~~~~~~~~~------g~id~ 86 (287)
T PRK06194 23 ARIGAALGMKLVLADVQQ-------DALDRAVAELRAQGAEVLGVRTDVSDAAQVEA---LADAALERF------GAVHL 86 (287)
T ss_pred HHHHHHCCCEEEEEeCCh-------HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH---HHHHHHHHc------CCCCE
Q ss_pred EEEeCCcch
Q 021545 220 IVVACGSGG 228 (311)
Q Consensus 220 ivv~vGtGG 228 (311)
||...|...
T Consensus 87 vi~~Ag~~~ 95 (287)
T PRK06194 87 LFNNAGVGA 95 (287)
T ss_pred EEECCCCCC
No 368
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=27.65 E-value=2e+02 Score=27.46 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=35.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHH-CCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERL-VGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~-~GAeV~~v~ 154 (311)
+|+..|+ |.-|+..+++++.+|-.-+++++... .++.+.+. +|++++.-.
T Consensus 171 ~V~V~Ga--GpIGLla~~~a~~~Ga~~Viv~d~~~----------~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGA--GPIGLLAIALAKLLGASVVIVVDRSP----------ERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCceEEEeCCCH----------HHHHHHHHhCCCeEeecC
Confidence 5555564 88899889999999998888885442 35666766 677766544
No 369
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=27.41 E-value=2.3e+02 Score=22.63 Aligned_cols=48 Identities=25% Similarity=0.242 Sum_probs=32.0
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCC-C-eEEEEeccCCchhhHHHHHHhHhhhCCC
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLK-A-KVHAFSVCDDPDYFYDYTQGLLDGLNAG 272 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~-~-rVigV~~~g~~~~~~~~i~~~~~g~~~~ 272 (311)
+| .|+.+|+=||+.-++.++...... . -.+|+-|.|+. +.|+..++.+
T Consensus 50 ~d-~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GTg-------Ndfar~lgi~ 99 (124)
T smart00046 50 FD-RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGTG-------NDLARSLGWG 99 (124)
T ss_pred CC-EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCCh-------hHHHHHcCCC
Confidence 45 455688888899999888654321 1 35888898876 4455566653
No 370
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=27.38 E-value=2.3e+02 Score=26.94 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchH-HHHHHCCCEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNL-LVERLVGAHIELISK 155 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~-~~~~~~GAeV~~v~~ 155 (311)
.+++..|- ..|-+.++-.+|+++|+++++..|+.--. ++...... ...+..|+.+.++.+
T Consensus 154 ~k~a~vGD-gNNv~nSl~~~~a~~G~dv~ia~Pk~~~p---~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 154 LKLAYVGD-GNNVANSLLLAAAKLGMDVRIATPKGYEP---DPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred cEEEEEcC-cchHHHHHHHHHHHhCCeEEEECCCcCCc---CHHHHHHHHHHHHhcCCeEEEecC
Confidence 45666654 48999999999999999999999987521 11111111 122334888877754
No 371
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.37 E-value=2.8e+02 Score=26.29 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=6.6
Q ss_pred HHHHHHHcCCcEEEEE
Q 021545 108 AAVAAKYLNLDCYLIL 123 (311)
Q Consensus 108 lA~~a~~~Gl~~~ivv 123 (311)
+...++.+|-++.+|.
T Consensus 14 l~~~~~~~~~r~livt 29 (351)
T cd08170 14 LGEYLARLGKRALIIA 29 (351)
T ss_pred HHHHHHHhCCeEEEEE
Confidence 3333444453444443
No 372
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=27.33 E-value=84 Score=30.08 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.0
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..|| |-.|.++|.+.++.|+++++|=..
T Consensus 6 v~IvGg--G~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 6 IAVVGG--GMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEcCC
Confidence 343465 889999999999999999888643
No 373
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=27.28 E-value=5.1e+02 Score=24.58 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=91.4
Q ss_pred CCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcc--cCCCC------
Q 021545 63 RDDLSGMQLSGNKVRKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL--VDQDP------ 134 (311)
Q Consensus 63 Redl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~--~~~~~------ 134 (311)
.||-..+..+..+.|++ + .++++.-|| |...|....+++-++.+.++..+......... ..-++
T Consensus 57 ~D~~~dp~~a~~~A~~l---i---~~~~V~~vv--G~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~ 128 (366)
T COG0683 57 EDDASDPATAAAVARKL---I---TQDGVDAVV--GPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTG 128 (366)
T ss_pred ecCCCChHHHHHHHHHH---H---hhcCceEEE--EeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEec
Confidence 55544443444555553 2 246777677 33445667777778888887765543111100 00000
Q ss_pred ---Cccc---hHHHHHHCCC-EEEEEcCc-cccccCcHHHHHHHHHHHHHcCCCcE----EecCCCCchhHHHHHHHHHH
Q 021545 135 ---GLIG---NLLVERLVGA-HIELISKE-EYSKIGSVTLTNILKEKLLKEGRRPY----VIPVGGSNSIGTWGYIEAIK 202 (311)
Q Consensus 135 ---~~~~---n~~~~~~~GA-eV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~~~y----~ip~g~~n~~~~~Gy~t~a~ 202 (311)
...+ --.+.+..|. .+.++..+ .|.. ...+...+.+++.|.... +.|.+ .+ +..+..
T Consensus 129 ~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~----~~~~~~~~~l~~~G~~~~~~~~~~~~~-~~------~~~~v~ 197 (366)
T COG0683 129 PTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGE----GLADAFKAALKALGGEVVVEEVYAPGD-TD------FSALVA 197 (366)
T ss_pred CChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcch----hHHHHHHHHHHhCCCeEEEEEeeCCCC-CC------hHHHHH
Confidence 0001 1123345677 67666543 3432 233445556666665421 12222 11 445666
Q ss_pred HHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCch
Q 021545 203 EIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 256 (311)
Q Consensus 203 EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~ 256 (311)
+|... .+| +|+-.|.+...+.+.+..++.+.+.++++.+..+...
T Consensus 198 ~i~~~--------~~d-~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~~~~~~~ 242 (366)
T COG0683 198 KIKAA--------GPD-AVLVGGYGPDAALFLRQAREQGLKAKLIGGDGAGTAE 242 (366)
T ss_pred HHHhc--------CCC-EEEECCCCccchHHHHHHHHcCCCCccccccccCchh
Confidence 66443 478 5555778888888999999999999988888877643
No 374
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=27.26 E-value=1.8e+02 Score=27.34 Aligned_cols=47 Identities=23% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCC-cchhHHHHHHHH----hhCCCCCeEEEEeccCC
Q 021545 200 AIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 200 ~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~~~~----~~~~~~~rVigV~~~g~ 254 (311)
...+|.+++. ..|.+|+..| +|||=+|.+..+ ++.+ .-+++|-+...
T Consensus 74 ~~~~I~~~l~------~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g--~~~~~vvt~Pf 125 (304)
T cd02201 74 SREEIKEALE------GADMVFITAGMGGGTGTGAAPVIAKIAKEMG--ALTVAVVTKPF 125 (304)
T ss_pred HHHHHHHHHh------CCCEEEEeeccCCCcchhHHHHHHHHHHHcC--CCEEEEEeCCc
Confidence 3344555553 4788888877 555655555443 3333 35666666543
No 375
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=27.19 E-value=4.3e+02 Score=23.14 Aligned_cols=31 Identities=6% Similarity=-0.041 Sum_probs=23.4
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
-||| |+ +|.-|.++|......|.+++++-+.
T Consensus 5 ilIt-G~-~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 5 AVVI-GG-GQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred EEEE-CC-CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3454 54 5899999999999999987776543
No 376
>PRK09126 hypothetical protein; Provisional
Probab=27.16 E-value=82 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|+..|| |=.|.++|.+.++.|++++++=...
T Consensus 6 viIvGg--G~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 6 IVVVGA--GPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred EEEECc--CHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 333465 7789999999999999988875443
No 377
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=27.16 E-value=2.2e+02 Score=27.56 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
+.|...|. |-.|.....+|+.+|.+.+.+.... .|+.+.+.+||+.+...+
T Consensus 168 ~~V~I~G~--GGlGh~avQ~Aka~ga~Via~~~~~-----------~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 168 KWVAVVGA--GGLGHMAVQYAKAMGAEVIAITRSE-----------EKLELAKKLGADHVINSS 218 (339)
T ss_pred CEEEEECC--cHHHHHHHHHHHHcCCeEEEEeCCh-----------HHHHHHHHhCCcEEEEcC
Confidence 34444443 4577777888899997777776442 478899999999888765
No 378
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=27.14 E-value=1.9e+02 Score=26.30 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=34.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ .|--|++++..|+.+|.+.+++.... .+...++.+|++-+
T Consensus 148 ~~vlI~ga-~g~vg~~~~~~A~~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~ 195 (324)
T cd08288 148 GPVLVTGA-AGGVGSVAVALLARLGYEVVASTGRP-----------EEADYLRSLGASEI 195 (324)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCH-----------HHHHHHHhcCCCEE
Confidence 46666654 58899999999999999866654322 25666788998543
No 379
>PRK07024 short chain dehydrogenase; Provisional
Probab=27.00 E-value=4.4e+02 Score=23.19 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=21.7
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
||| |+ +|--|.++|....+.|.+.+++.+
T Consensus 6 lIt-Ga-s~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 6 FIT-GA-SSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEE-cC-CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 444 54 478999999999999988766654
No 380
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.98 E-value=2e+02 Score=26.87 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..| + |..|++++.+|+.+|.+.++.+.... .+....+.+|++-+
T Consensus 168 ~~vlI~g-~-g~iG~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~ 215 (351)
T cd08285 168 DTVAVFG-I-GPVGLMAVAGARLRGAGRIIAVGSRP----------NRVELAKEYGATDI 215 (351)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHcCCceE
Confidence 4555555 3 78999999999999997555554332 35677788998643
No 381
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=26.88 E-value=1.5e+02 Score=25.59 Aligned_cols=46 Identities=22% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEe
Q 021545 194 TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFS 250 (311)
Q Consensus 194 ~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~ 250 (311)
+++...++.+|.++ |-.||.|+.=.|=|-+ +.+|+..|++++++..
T Consensus 50 g~av~~a~~~L~~~------Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 50 GQAVARAARQLRAQ------GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHHHc------CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEEE
Confidence 34555566666554 3578999888877664 4788888999999765
No 382
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.88 E-value=3.7e+02 Score=25.70 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 168 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 168 ~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
+++.+.+.+.+-...++..-..|+. .....++.+++.+ ..+|. |+++|+|..
T Consensus 41 ~~v~~~L~~~~~~~~~~~~~~~~p~-----~~~v~~~~~~~~~----~~~d~-IiaiGGGs~ 92 (370)
T cd08551 41 DKVIDSLKEAGIEVVIFDGVEPNPT-----LSNVDAAVAAYRE----EGCDG-VIAVGGGSV 92 (370)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCCC-----HHHHHHHHHHHHh----cCCCE-EEEeCCchH
Confidence 4455566654433222322223333 1234566666653 34654 677888765
No 383
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=26.78 E-value=1.1e+02 Score=22.63 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=24.1
Q ss_pred HcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 88 AQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 88 ~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
..++..||+..|+.-.| .|..||.+|+++++-++.
T Consensus 28 ~~~~~Giv~~~Gg~~SH---~aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 28 LQRVAGIVTEEGGPTSH---AAILARELGIPAIVGVGD 62 (80)
T ss_dssp HTTSSEEEESSSSTTSH---HHHHHHHTT-EEEESTTT
T ss_pred hhheEEEEEEcCCccch---HHHHHHHcCCCEEEeecc
Confidence 45667788764433344 488999999999987753
No 384
>PRK08636 aspartate aminotransferase; Provisional
Probab=26.72 E-value=5.7e+02 Score=24.47 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=13.6
Q ss_pred chHHHHHHCCCEEEEEcC
Q 021545 138 GNLLVERLVGAHIELISK 155 (311)
Q Consensus 138 ~n~~~~~~~GAeV~~v~~ 155 (311)
.-....+.+|++++.++-
T Consensus 131 ~~~~~~~~~g~~~~~v~~ 148 (403)
T PRK08636 131 IHSQAFILAGGNVHKMPL 148 (403)
T ss_pred chHHHHHhcCCEEEEEec
Confidence 346678889999988753
No 385
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=26.55 E-value=82 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHHcCCcEEEEEcC
Q 021545 102 SNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 102 GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|-+|+++|+.+++.|++-++++..
T Consensus 6 G~aGl~~a~~l~~~g~~~v~v~e~ 29 (203)
T PF13738_consen 6 GPAGLAAAAHLLERGIDPVVVLER 29 (203)
T ss_dssp SHHHHHHHHHHHHTT---EEEEES
T ss_pred CHHHHHHHHHHHhCCCCcEEEEeC
Confidence 789999999999999994445443
No 386
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.51 E-value=2.5e+02 Score=24.40 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=34.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
+++..|+ +|--|+++|......|.++++..+..... .......++..|.++..+.
T Consensus 8 ~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEE------MNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHH------HHHHHHHHHHcCCeeEEEE
Confidence 3443454 57889999999999999887765443211 0123445666777765554
No 387
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=26.47 E-value=93 Score=30.62 Aligned_cols=26 Identities=23% Similarity=0.036 Sum_probs=22.9
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+|-.|.++|.++...|.+++++...
T Consensus 212 SSG~~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKMGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 57889999999999999999887644
No 388
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.44 E-value=5.7e+02 Score=24.34 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=28.0
Q ss_pred HHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 86 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 86 a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
.+++|+..|+ |.+++....+++.+|..++++.+..
T Consensus 53 ~~~~GV~AI~--Gp~ss~~~~~v~~i~~~~~IP~I~~ 87 (370)
T cd06389 53 QFSRGVYAIF--GFYDKKSVNTITSFCGTLHVSFITP 87 (370)
T ss_pred HhhcCcEEEE--ecCCHHHHHHHHHhhccCCCCeeee
Confidence 4567766555 7788889999999999999998853
No 389
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.33 E-value=98 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
|+..|| |=.|.++|.+.++.|+++++|=....
T Consensus 4 V~IvGa--G~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIVGA--GPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE----SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEECC--CHHHHHHHHHHHhcccccccchhccc
Confidence 343454 67899999999999999888865544
No 390
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.25 E-value=5.1e+02 Score=23.76 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchh
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSI 192 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~ 192 (311)
...++.+|.++++.+.+. . .+.++ +.++++.+.- .+..+++..||.-|.
T Consensus 56 ~~av~~~G~~avmT~~~h-~-SGTdR-~~Ev~~~l~~-~~~~iIVNvQGDeP~ 104 (247)
T COG1212 56 AEAVQAFGGEAVMTSKDH-Q-SGTDR-LAEVVEKLGL-PDDEIIVNVQGDEPF 104 (247)
T ss_pred HHHHHHhCCEEEecCCCC-C-CccHH-HHHHHHhcCC-CcceEEEEccCCCCC
Confidence 456667777777776532 1 12222 2333333322 123466776666554
No 391
>PRK08628 short chain dehydrogenase; Provisional
Probab=26.08 E-value=4.5e+02 Score=23.00 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=32.6
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
-+|| |+ +|--|.++|..-.+.|.+++++.+.... ..-...++..|.++..+.-
T Consensus 10 ilIt-Ga-sggiG~~la~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~ 62 (258)
T PRK08628 10 VIVT-GG-ASGIGAAISLRLAEEGAIPVIFGRSAPD--------DEFAEELRALQPRAEFVQV 62 (258)
T ss_pred EEEe-CC-CChHHHHHHHHHHHcCCcEEEEcCChhh--------HHHHHHHHhcCCceEEEEc
Confidence 3454 54 4679999999999999998777543321 0012334456777655543
No 392
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.00 E-value=2.7e+02 Score=20.50 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=31.4
Q ss_pred CCCCeEEEeCC-cchhHHHHHHHHhhCCCCCeEEEEeccCCch
Q 021545 215 VKFDDIVVACG-SGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD 256 (311)
Q Consensus 215 ~~~D~ivv~vG-tGGt~aGl~~~~~~~~~~~rVigV~~~g~~~ 256 (311)
..||.+++... .++....++..++..++.++|+.+....+..
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSD 84 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHH
T ss_pred cCceEEEEEeeeccccccccccccccccccccEEEecCCCCHH
Confidence 35999999865 3345666777777777999999999777654
No 393
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=25.86 E-value=4.9e+02 Score=23.38 Aligned_cols=161 Identities=11% Similarity=0.041 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc-----ccCCCCCccch---HHHHHHCC--
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV-----LVDQDPGLIGN---LLVERLVG-- 147 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~-----~~~~~~~~~~n---~~~~~~~G-- 147 (311)
+...++..+..++++.+|.. +............++..|++++.+-+...+ .+..+....++ ..+.+..|
T Consensus 70 ~~~~~~~~l~~~~~dgiii~-~~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~~~ 148 (295)
T PRK10653 70 KELANVQDLTVRGTKILLIN-PTDSDAVGNAVKMANQANIPVITLDRGATKGEVVSHIASDNVAGGKMAGDFIAKKLGEG 148 (295)
T ss_pred HHHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHCCCCEEEEccCCCCCceeeEEccChHHHHHHHHHHHHHHhCCC
Confidence 34455666777888888764 333333334455677789988887532211 01011000111 11223334
Q ss_pred CEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcc
Q 021545 148 AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSG 227 (311)
Q Consensus 148 AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtG 227 (311)
.++..+... ........+.+...+.+++.+...+.......+. ..++. ...++.+.- ..+|.||+ .+-
T Consensus 149 ~~i~~~~~~-~~~~~~~~R~~gf~~al~~~g~~~~~~~~~~~~~--~~~~~-~~~~~l~~~------~~~~ai~~--~~d 216 (295)
T PRK10653 149 AKVIQLEGI-AGTSAARERGEGFKQAVAAHKFNVLASQPADFDR--TKGLN-VMQNLLTAH------PDVQAVFA--QND 216 (295)
T ss_pred ceEEEEEcc-CCCccHHHHHHHHHHHHhhCCCEEEEecCCCCCH--HHHHH-HHHHHHHhC------CCcCEEEE--CCC
Confidence 345544321 1110112233444445555442222121221121 12332 333443321 34777766 333
Q ss_pred hhHHHHHHHHhhCCC-CCeEEEEec
Q 021545 228 GTIAGLSLGSWLGTL-KAKVHAFSV 251 (311)
Q Consensus 228 Gt~aGl~~~~~~~~~-~~rVigV~~ 251 (311)
..+.|+..++++.+. ++.|+|++-
T Consensus 217 ~~A~g~l~al~~~G~~dv~vig~d~ 241 (295)
T PRK10653 217 EMALGALRALQTAGKSDVMVVGFDG 241 (295)
T ss_pred hhHHHHHHHHHHcCCCceEEEEeCC
Confidence 556688999988876 788887774
No 394
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=25.82 E-value=1.9e+02 Score=27.29 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=33.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |-.|.+++.+|+.+|.+-++++... ..+...++.+|++-+.
T Consensus 186 ~~vlV~G-~-g~vG~~~~~~a~~~G~~~Vi~~~~~----------~~~~~~~~~~ga~~~i 234 (365)
T cd08277 186 STVAVFG-L-GAVGLSAIMGAKIAGASRIIGVDIN----------EDKFEKAKEFGATDFI 234 (365)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHcCCCcEe
Confidence 4555555 3 7899999999999999544444332 1357777889986443
No 395
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=25.76 E-value=2e+02 Score=27.74 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=27.2
Q ss_pred HHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 87 VAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 87 ~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
.+...+.||..|+.+.|.. +|.+|+.+|++++++++
T Consensus 86 ~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~ 121 (385)
T TIGR00215 86 KQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYIS 121 (385)
T ss_pred HhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeC
Confidence 3446788898887666764 56678999999998864
No 396
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.75 E-value=1.8e+02 Score=28.72 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=23.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
++|+.+| .|+-|+.+|..++.+|.+++++
T Consensus 196 k~VvViG--~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAG--YGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred CEEEEEC--CCHHHHHHHHHHhhCcCEEEEE
Confidence 4566666 3899999999999999985554
No 397
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=25.54 E-value=90 Score=31.51 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 91 ~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
.+.|| .|| |-.|.++|..+++.|+++.++=..
T Consensus 7 ~DVvI-IGG--Gi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLV-IGG--GINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEecC
Confidence 35455 465 789999999999999998777543
No 398
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=25.47 E-value=1e+02 Score=26.15 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
++|+..|+ ||.+.-+|......|-+++++++..
T Consensus 168 k~V~VVG~--G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGG--GNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE----SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CcEEEEcC--hHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45655675 8999999999999999999998764
No 399
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.47 E-value=5.3e+02 Score=23.63 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcc--cC-----CCCC--ccchHHHHHHCCC
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVL--VD-----QDPG--LIGNLLVERLVGA 148 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~--~~-----~~~~--~~~n~~~~~~~GA 148 (311)
+-...+.+++.+|.+.|+.. ....+......-.++..|++.+.+-...... .. .++. ...-..+.+.+|.
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~-~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~ 157 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIIN-PVDPDALTPAVKKAKAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGG 157 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEc-CCChhhhHHHHHHHHHCCCcEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCC
Confidence 34456777888999988864 4567788888888999999998887543321 00 0000 0111223344554
Q ss_pred E--E-EEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC
Q 021545 149 H--I-ELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG 225 (311)
Q Consensus 149 e--V-~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vG 225 (311)
+ + +..+...+. ...++.....+.+.+..+...++.....+.....++. ....++..- .+++.|+. .
T Consensus 158 ~g~v~~~~g~~~~~--~~~~R~~G~~~~l~~~~~~~~v~~~~~~~~~~~~a~~-~~~~~L~~~------pdi~~i~~--~ 226 (322)
T COG1879 158 KGKVVVLVGSPGNS--SAEERVKGFRDALKEHPPDIEVVDVQTGDWDRDKALE-VMEDLLAAN------PDIDGIYA--A 226 (322)
T ss_pred CCeEEEEecCCCCc--hHHHHHhhHHHHHHhCCCcEEEeeccCCcccHHHHHH-HHHHHHHhC------CCceEEEE--C
Confidence 3 4 333332221 1122333445556654432344544444544444432 223333321 24555554 4
Q ss_pred cchhHHHHHHHHhhCCCCCeEEEEeccCCc
Q 021545 226 SGGTIAGLSLGSWLGTLKAKVHAFSVCDDP 255 (311)
Q Consensus 226 tGGt~aGl~~~~~~~~~~~rVigV~~~g~~ 255 (311)
+++...|...+++..+..-+|..+-..+++
T Consensus 227 ~d~~a~ga~~A~~~~g~~~~v~v~g~D~~~ 256 (322)
T COG1879 227 NDGMALGAIQALKAAGRKGDVVVVGFDGTP 256 (322)
T ss_pred CchhHHHHHHHHHHcCCCCceEEEEecCCH
Confidence 455666777888866554344444444444
No 400
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.43 E-value=5.4e+02 Score=23.72 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV 128 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~ 128 (311)
+.+.+++++.+.|++.|+..-=. -.+.--+...|++.|++.+.++...++
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 55666777777777777654322 256667777778888888777766553
No 401
>PRK02106 choline dehydrogenase; Validated
Probab=25.42 E-value=71 Score=32.55 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhCC-CCCeEEEEeccCC
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLGT-LKAKVHAFSVCDD 254 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~~-~~~rVigV~~~g~ 254 (311)
..+|+|||..|++|.+ .+.++.. +..+|+-+|..+.
T Consensus 4 ~~~D~iIVG~G~aG~v----vA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCV----LANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHH----HHHHHHhCCCCeEEEecCCCc
Confidence 3589999987776654 4444444 7889999998863
No 402
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=25.40 E-value=2.3e+02 Score=26.48 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=31.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..| + |.-|++++.+|+.+|.+.++++... ..+..+++.+|++-+.
T Consensus 179 ~~vlI~g-~-g~vG~~~~~lak~~G~~~v~~~~~~----------~~~~~~~~~~g~~~vi 227 (361)
T cd08231 179 DTVVVQG-A-GPLGLYAVAAAKLAGARRVIVIDGS----------PERLELAREFGADATI 227 (361)
T ss_pred CEEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEcCC----------HHHHHHHHHcCCCeEE
Confidence 4455454 3 8999999999999999433433222 1246667789986433
No 403
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.40 E-value=4.7e+02 Score=23.00 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCc------ccCCCCCccchH---HHHHHCCC---
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKV------LVDQDPGLIGNL---LVERLVGA--- 148 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~------~~~~~~~~~~n~---~~~~~~GA--- 148 (311)
..+..+..++++.||..+ ...+........++..|++++++-+.... .+..+....+.. .++..+|.
T Consensus 46 ~~i~~~~~~~~Dgiii~~-~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~g~~~~ 124 (282)
T cd06318 46 ADVEDLLTRGVNVLIINP-VDPEGLVPAVAAAKAAGVPVVVVDSSINLEAGVVTQVQSSNAKNGNLVGEWVVGELGDKPM 124 (282)
T ss_pred HHHHHHHHcCCCEEEEec-CCccchHHHHHHHHHCCCCEEEecCCCCCCcCeEEEEecCcHHHHHHHHHHHHHHhCCCCc
Confidence 456677788999888653 22222223345557789999888542211 111010001121 12233564
Q ss_pred EEEEEcCc-cccccCcHHHHHHHHHHHHHcCC------CcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Q 021545 149 HIELISKE-EYSKIGSVTLTNILKEKLLKEGR------RPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIV 221 (311)
Q Consensus 149 eV~~v~~~-~~~~~~~~~~~~~~~~~l~~~g~------~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~iv 221 (311)
+|..+... ... . ...+.+...+.+++.+. ..-++.....+..-..++. ...+++.+- .++|.||
T Consensus 125 ~i~~i~~~~~~~-~-~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~ai~ 195 (282)
T cd06318 125 KIILLSGDAGNL-V-GQARRDGFLLGVSEAQLRKYGKTNFTIVAQGYGDWTREGGLK-AMEDLLVAH------PDINVVY 195 (282)
T ss_pred eEEEEECCCCCc-h-HhHHHHhHHHHHhhCcccccccCCeEEEecCCCCCCHHHHHH-HHHHHHHhC------CCcCEEE
Confidence 56665421 111 0 11222333444444321 1112211111111123442 333443321 3578887
Q ss_pred EeCCcchhHHHHHHHHhhCCC--CCeEEEEec
Q 021545 222 VACGSGGTIAGLSLGSWLGTL--KAKVHAFSV 251 (311)
Q Consensus 222 v~vGtGGt~aGl~~~~~~~~~--~~rVigV~~ 251 (311)
+ .+...+.|+..+++..+. ++.|+|++-
T Consensus 196 ~--~~d~~a~g~~~al~~~g~~~dv~vvg~d~ 225 (282)
T cd06318 196 S--ENDDMALGAMRVLAEAGKTDDVKVAAADG 225 (282)
T ss_pred E--CCcchHHHHHHHHHHcCCCCCeEEEecCC
Confidence 6 333556788999988764 566776654
No 404
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=25.37 E-value=1.3e+02 Score=28.36 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEE
Q 021545 195 WGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVH 247 (311)
Q Consensus 195 ~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVi 247 (311)
.|+..=+.||..+..+.+. ..=+-+++.||+|=+++=++.++...+++++|.
T Consensus 215 ~g~~k~~edl~~~f~~~~l-~~~~p~~~sC~~Gisa~~i~~al~r~g~~~~lY 266 (286)
T KOG1529|consen 215 DGFIKPAEDLKHLFAQKGL-KLSKPVIVSCGTGISASIIALALERSGPDAKLY 266 (286)
T ss_pred ccccCCHHHHHHHHHhcCc-ccCCCEEEeeccchhHHHHHHHHHhcCCCccee
Confidence 4443336788888764211 011458999999999999999998888787775
No 405
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=25.18 E-value=4.5e+02 Score=22.98 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=23.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+ +|.-|.++|....+.|.+++++-+
T Consensus 10 ~vlVt-Ga-s~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 10 VVVVT-GA-AQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred EEEEe-CC-CchHHHHHHHHHHHCCCEEEEEeC
Confidence 34555 54 478999999999999998776644
No 406
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.16 E-value=4.5e+02 Score=22.72 Aligned_cols=35 Identities=17% Similarity=-0.043 Sum_probs=25.0
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhCCC----CCeEEEEec
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSV 251 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~~~----~~rVigV~~ 251 (311)
..+|.||++ +..++.|+..+++..+. ++.|+|++-
T Consensus 175 ~~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~d~ 213 (267)
T cd06284 175 DRPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGFDD 213 (267)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEeCC
Confidence 358898886 55567899999988763 456777653
No 407
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.11 E-value=4.6e+02 Score=23.33 Aligned_cols=92 Identities=20% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccc
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSK 160 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~ 160 (311)
.-.+.|.+.|++=+|+-+ -|. .+...|++.|+.+ +|.... | . -+.....+|++++.+=+...
T Consensus 78 ~~a~~a~~aGA~FivsP~---~~~--~vi~~a~~~~i~~---iPG~~T-----p--t-Ei~~a~~~Ga~~vKlFPa~~-- 139 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPG---LTP--PLLKAAQEGPIPL---IPGVST-----P--S-ELMLGMELGLRTFKFFPAEA-- 139 (212)
T ss_pred HHHHHHHHcCCCEEECCC---CCH--HHHHHHHHcCCCE---eCCCCC-----H--H-HHHHHHHCCCCEEEEccchh--
Confidence 447778889998888653 344 8889999988765 444331 1 1 26667789999887733111
Q ss_pred cCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHH
Q 021545 161 IGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGT 194 (311)
Q Consensus 161 ~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~ 194 (311)
.+-..++. .+..--+..-+.|.||-++.+.
T Consensus 140 ~gg~~~lk----~l~~p~p~~~~~ptGGV~~~ni 169 (212)
T PRK05718 140 SGGVKMLK----ALAGPFPDVRFCPTGGISPANY 169 (212)
T ss_pred ccCHHHHH----HHhccCCCCeEEEeCCCCHHHH
Confidence 01122322 2332223345678888776543
No 408
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=25.06 E-value=6.1e+02 Score=24.20 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHCC-CEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcE--EecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 021545 141 LVERLVG-AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPY--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKF 217 (311)
Q Consensus 141 ~~~~~~G-AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y--~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~ 217 (311)
..++.+| -++..+.+....+. ..+.+.+.+.+.+-... +++.+-.|+.- ....++.+++.+ ..+
T Consensus 24 ~~l~~~~~~~~livtd~~~~~~----~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~-----~~v~~~~~~~~~----~~~ 90 (358)
T PRK00002 24 ELLAPLKGKKVAIVTDETVAPL----YLEKLRASLEAAGFEVDVVVLPDGEQYKSL-----ETLEKIYDALLE----AGL 90 (358)
T ss_pred HHHHhcCCCeEEEEECCchHHH----HHHHHHHHHHhcCCceEEEEeCCCCCCCCH-----HHHHHHHHHHHH----cCC
Q ss_pred --CeEEEeCCcchh--HHHHHHHHhhCCCCCeEEEEec
Q 021545 218 --DDIVVACGSGGT--IAGLSLGSWLGTLKAKVHAFSV 251 (311)
Q Consensus 218 --D~ivv~vGtGGt--~aGl~~~~~~~~~~~rVigV~~ 251 (311)
..+++++|+|.. +++.+..... ..++++.|..
T Consensus 91 ~r~d~IIavGGGsv~D~aK~iA~~~~--~gip~i~IPT 126 (358)
T PRK00002 91 DRSDTLIALGGGVIGDLAGFAAATYM--RGIRFIQVPT 126 (358)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhc--CCCCEEEcCc
No 409
>PRK09620 hypothetical protein; Provisional
Probab=25.00 E-value=1.2e+02 Score=27.41 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=22.2
Q ss_pred ccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 100 IQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 100 s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+|=.|..+|..+...|.+++++..
T Consensus 27 SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 27 AKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 5789999999999999999888864
No 410
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.00 E-value=1.7e+02 Score=25.12 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCcE--EecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCC
Q 021545 167 TNILKEKLLKEGRRPY--VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKA 244 (311)
Q Consensus 167 ~~~~~~~l~~~g~~~y--~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~ 244 (311)
++.+++.|++-+ -+| .+-.-+.+|.-+. |..++..+ ..+++|+...|+...+-|+..+.- ..
T Consensus 18 mk~Aa~~L~~fg-i~ye~~VvSAHRTPe~m~-------~ya~~a~~----~g~~viIAgAGgAAHLPGmvAa~T----~l 81 (162)
T COG0041 18 MKKAAEILEEFG-VPYEVRVVSAHRTPEKMF-------EYAEEAEE----RGVKVIIAGAGGAAHLPGMVAAKT----PL 81 (162)
T ss_pred HHHHHHHHHHcC-CCeEEEEEeccCCHHHHH-------HHHHHHHH----CCCeEEEecCcchhhcchhhhhcC----CC
Confidence 355666665533 223 1223344555433 44444432 348889999999889999988864 56
Q ss_pred eEEEEeccCCchhhHHHHHHhH
Q 021545 245 KVHAFSVCDDPDYFYDYTQGLL 266 (311)
Q Consensus 245 rVigV~~~g~~~~~~~~i~~~~ 266 (311)
.||||.+...........-.+.
T Consensus 82 PViGVPv~s~~L~GlDSL~SiV 103 (162)
T COG0041 82 PVIGVPVQSKALSGLDSLLSIV 103 (162)
T ss_pred CeEeccCccccccchHHHHHHh
Confidence 8999999866554444444333
No 411
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=25.00 E-value=1.7e+02 Score=26.01 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=32.1
Q ss_pred eEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhHH
Q 021545 219 DIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFYD 260 (311)
Q Consensus 219 ~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~~ 260 (311)
.+|+.+|+|+.+-.+..+.+.-..+.+|.+|-......+..+
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~le 44 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALE 44 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH
Confidence 467888999999999998886555778888887776655543
No 412
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=24.99 E-value=4.8e+02 Score=22.97 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=0.0
Q ss_pred cCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHH
Q 021545 89 QGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTN 168 (311)
Q Consensus 89 ~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~ 168 (311)
+|...||| |.+|--|.++|......|.+++++-+..... ..+...++.++..+.-+.-+.......++
T Consensus 5 ~~k~vlVt--Gas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 5 HGQVALIT--GGGSGIGRALVERFLAEGARVAVLERSAEKL----------ASLRQRFGDHVLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCCEEEEe--CCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------HHHHHHhCCcceEEEccCCCHHHHHHHHH
Q ss_pred HHHHHHHHcCCCcEEecCCCCch---------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeC---
Q 021545 169 ILKEKLLKEGRRPYVIPVGGSNS---------------------IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVAC--- 224 (311)
Q Consensus 169 ~~~~~l~~~g~~~y~ip~g~~n~---------------------~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~v--- 224 (311)
.+.+.+..-. .++...+.... .+..|...+.+.+...+.. ..--.|++..
T Consensus 73 ~~~~~~g~id--~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~g~iv~~sS~~~ 146 (263)
T PRK06200 73 QTVDAFGKLD--CFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKA----SGGSMIFTLSNSS 146 (263)
T ss_pred HHHHhcCCCC--EEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHh----cCCEEEEECChhh
Q ss_pred ---CcchhHHHHHHH---------HhhCCCCCeEEEEec
Q 021545 225 ---GSGGTIAGLSLG---------SWLGTLKAKVHAFSV 251 (311)
Q Consensus 225 ---GtGGt~aGl~~~---------~~~~~~~~rVigV~~ 251 (311)
+.|...-+.+++ .+++.++++|.+|.|
T Consensus 147 ~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~P 185 (263)
T PRK06200 147 FYPGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAP 185 (263)
T ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeC
No 413
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=24.98 E-value=1.1e+02 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=25.2
Q ss_pred CCCCeEEEeCCcchhHHHHHHH--HhhCCCCCeEEEEeccC
Q 021545 215 VKFDDIVVACGSGGTIAGLSLG--SWLGTLKAKVHAFSVCD 253 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~--~~~~~~~~rVigV~~~g 253 (311)
.+||+|++++|.=-|+=-+++. ++..-|+.||--|.+.+
T Consensus 33 ~ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvD 73 (203)
T PF09363_consen 33 EEPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVD 73 (203)
T ss_dssp TT-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESB
T ss_pred CCCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeE
Confidence 5799999999988887666655 35566777777777764
No 414
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=24.91 E-value=2.1e+02 Score=27.63 Aligned_cols=91 Identities=22% Similarity=0.116 Sum_probs=46.2
Q ss_pred CchhH-HHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCC-cchh---HHHHHH-HHhhCCCCCeEEEEeccCCchhhHHHH
Q 021545 189 SNSIG-TWGYIEAIKEIEQQLQTGTGGVKFDDIVVACG-SGGT---IAGLSL-GSWLGTLKAKVHAFSVCDDPDYFYDYT 262 (311)
Q Consensus 189 ~n~~~-~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt---~aGl~~-~~~~~~~~~rVigV~~~g~~~~~~~~i 262 (311)
.||.. ......--.||.+.+. ..|-+|+.+| +||| .+.+.. ..++ ...-+++|.......-...+.
T Consensus 73 a~P~vG~~aAee~~~~I~~~l~------g~dmvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~EG~~r~ 144 (338)
T COG0206 73 ANPEVGRAAAEESIEEIEEALK------GADMVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSFEGSPRM 144 (338)
T ss_pred CCcHHHHHHHHHHHHHHHHHhc------cCCeEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchhcCchHH
Confidence 45542 3333444555666654 3676777666 3344 444333 3344 456677777766543333333
Q ss_pred HHhHhhhCC-CCCCCCeEEeccCCcc
Q 021545 263 QGLLDGLNA-GVDSRDIVNIQNVSVY 287 (311)
Q Consensus 263 ~~~~~g~~~-~~~~~dvv~v~e~~~~ 287 (311)
..-..++.. ...+|.++.+++.+..
T Consensus 145 ~~A~~gi~~L~~~~DtlIvi~Ndkll 170 (338)
T COG0206 145 ENAEEGIEELREVVDTLIVIPNDKLL 170 (338)
T ss_pred HHHHHHHHHHHHhCCcEEEEecHHHH
Confidence 333333332 2345777777766543
No 415
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.86 E-value=5e+02 Score=23.15 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHCCCEEEEEcCcccc
Q 021545 140 LLVERLVGAHIELISKEEYS 159 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~ 159 (311)
+...+.+|-....+...+|.
T Consensus 43 lerA~~~gIpt~~~~~k~~~ 62 (200)
T COG0299 43 LERAAKAGIPTVVLDRKEFP 62 (200)
T ss_pred HHHHHHcCCCEEEeccccCC
Confidence 45555566665555444443
No 416
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=24.85 E-value=5.5e+02 Score=23.66 Aligned_cols=31 Identities=29% Similarity=0.164 Sum_probs=22.1
Q ss_pred EEEEeCCccchHHHHHHHHHHHcC-CcEEEEEcC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRT 125 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~G-l~~~ivv~~ 125 (311)
.||| |++ +--|.++|......| .+++++.+.
T Consensus 6 vlIT-Gas-~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 6 VIIT-GAS-SGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred EEEE-CCC-ChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3454 544 577888888888889 887777654
No 417
>PRK09330 cell division protein FtsZ; Validated
Probab=24.84 E-value=69 Score=31.45 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEeCC-cchhHHHHHHHH----hhCCCCCeEEEEeccC
Q 021545 200 AIKEIEQQLQTGTGGVKFDDIVVACG-SGGTIAGLSLGS----WLGTLKAKVHAFSVCD 253 (311)
Q Consensus 200 ~a~EI~~Q~~~~~~~~~~D~ivv~vG-tGGt~aGl~~~~----~~~~~~~rVigV~~~g 253 (311)
...||.+.+. ..|.||+.+| +|||=+|.+--+ ++++ .-+++|-+..
T Consensus 87 ~~e~I~~~l~------~~D~vfI~AGmGGGTGTGaapvIA~iake~g--~ltvaVvt~P 137 (384)
T PRK09330 87 SREEIREALE------GADMVFITAGMGGGTGTGAAPVVAEIAKELG--ILTVAVVTKP 137 (384)
T ss_pred HHHHHHHHHc------CCCEEEEEecCCCcccHHHHHHHHHHHHHcC--CcEEEEEecC
Confidence 4455655553 4788998887 345545544433 3443 5566766654
No 418
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.81 E-value=4.6e+02 Score=22.72 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=33.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.+|| |+ +|.-|.++|..-...|.+++++.+..... ......++..|.++..+.
T Consensus 7 vlIt-G~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~-------~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 7 ALVT-GA-ASGIGLEIALALAKEGAKVVIADLNDEAA-------AAAAEALQKAGGKAIGVA 59 (258)
T ss_pred EEEE-CC-CchHHHHHHHHHHHCCCeEEEEeCCHHHH-------HHHHHHHHhcCCcEEEEE
Confidence 3454 54 47899999999888999988876543211 111233444677765554
No 419
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.79 E-value=4.7e+02 Score=22.78 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=8.5
Q ss_pred CCCeEEEEeccC
Q 021545 242 LKAKVHAFSVCD 253 (311)
Q Consensus 242 ~~~rVigV~~~g 253 (311)
..++|.+|.+..
T Consensus 179 ~gi~v~~i~PG~ 190 (252)
T PRK07035 179 FGIRVNALLPGL 190 (252)
T ss_pred cCEEEEEEeecc
Confidence 368888887743
No 420
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.78 E-value=2.4e+02 Score=30.01 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=36.7
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCc-EEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLD-CYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~-~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++||..|| ||.|.-+|..+.++|.+ ++++.+..... -|.....+..++..|.+++.
T Consensus 571 k~VvVIGg--G~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~---~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 571 KKVAVVGG--GNTAMDSARTAKRLGAERVTIVYRRSEEE---MPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CcEEEECC--cHHHHHHHHHHHHcCCCeEEEeeecCccc---CCCCHHHHHHHHHcCCEEEe
Confidence 35555675 89999999999999998 88887654211 11111223456677877654
No 421
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=24.67 E-value=4.9e+02 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 81 FLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 81 ~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..+..+.+++++.||... .........-..++..|++++++-.
T Consensus 45 ~~i~~~~~~~~dgiii~~-~~~~~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 45 SAIDNLGAQGAKGFVICV-PDVKLGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred HHHHHHHHcCCCEEEEcc-CchhhhHHHHHHHHhCCCeEEEecC
Confidence 356667778889888653 2222334445567789999998853
No 422
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=24.66 E-value=3.1e+02 Score=25.10 Aligned_cols=77 Identities=18% Similarity=0.071 Sum_probs=40.3
Q ss_pred CCCCCCCCCCchhHHhHHHHHHHHHHcCCCEEE-EeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHH
Q 021545 63 RDDLSGMQLSGNKVRKLEFLMADAVAQGADCII-TIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLL 141 (311)
Q Consensus 63 Redl~~~~~ggnK~Rkl~~ll~~a~~~G~~~vV-t~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~ 141 (311)
-|||..| .|- .+.++..+++..... ..++ +.|++.+|.....+. + ..| -.|+++.... .....
T Consensus 51 ~d~l~~~-~g~--i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al-~-~~g--d~Vlv~~~~h--------~s~~~ 114 (294)
T cd00615 51 LDDLLDP-TGP--IKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAV-C-GPG--DKILIDRNCH--------KSVIN 114 (294)
T ss_pred CCCCCCC-ChH--HHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHc-C-CCC--CEEEEeCCch--------HHHHH
Confidence 6777665 333 345555565554222 3444 555555665443332 1 222 2444443321 23466
Q ss_pred HHHHCCCEEEEEcC
Q 021545 142 VERLVGAHIELISK 155 (311)
Q Consensus 142 ~~~~~GAeV~~v~~ 155 (311)
.++..|++++.+..
T Consensus 115 ~~~~~g~~~~~v~~ 128 (294)
T cd00615 115 GLVLSGAVPVYLKP 128 (294)
T ss_pred HHHHCCCEEEEecC
Confidence 77889999888754
No 423
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.62 E-value=5.5e+02 Score=23.55 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=25.5
Q ss_pred HHHHHHc-CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 83 MADAVAQ-GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 83 l~~a~~~-G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
.++++++ ++..|+ |+.+|..+.+++-.+.+.+++++..
T Consensus 58 a~~li~~~~v~aii--G~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 58 ADELVKDPEILGVV--GHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred HHHHhcccCceEEE--cCCCcHHHHHHHHHHhhcCceEEcc
Confidence 3444433 555554 6666777888888899999887654
No 424
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=24.58 E-value=4.6e+02 Score=22.65 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=32.9
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEc
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELIS 154 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~ 154 (311)
.+|| |+ +|.-|+++|....+.|.+.+++....... ....+..++..|++++.+.
T Consensus 6 ~lVt-G~-s~giG~~~a~~l~~~G~~vv~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 6 AYVT-GG-MGGIGTSICQRLHKDGFKVVAGCGPNSPR------RVKWLEDQKALGFDFIASE 59 (246)
T ss_pred EEEE-CC-CChHHHHHHHHHHHcCCEEEEEcCCChHH------HHHHHHHHHhcCCcEEEEE
Confidence 3554 44 57899999999999998876654332210 0112334455687776544
No 425
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=24.57 E-value=3.3e+02 Score=20.93 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=14.6
Q ss_pred CCCeEEEeCCcchhH---HHHHHHHhhCCCCCeEE
Q 021545 216 KFDDIVVACGSGGTI---AGLSLGSWLGTLKAKVH 247 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~---aGl~~~~~~~~~~~rVi 247 (311)
+||.|.+.+-.+.+. .-++...|...|+++|+
T Consensus 51 ~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv 85 (121)
T PF02310_consen 51 RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV 85 (121)
T ss_dssp TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE
T ss_pred CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 466666655333332 22233334445555554
No 426
>PRK07121 hypothetical protein; Validated
Probab=24.52 E-value=97 Score=30.93 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.7
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 91 ~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
++.|| +|+ |..|.+.|..|++.|.+++++-.
T Consensus 21 ~DVvV-VGa--G~AGl~AA~~aae~G~~VillEK 51 (492)
T PRK07121 21 ADVVV-VGF--GAAGACAAIEAAAAGARVLVLER 51 (492)
T ss_pred cCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 56555 565 89999999999999998887753
No 427
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.48 E-value=3.4e+02 Score=24.93 Aligned_cols=66 Identities=24% Similarity=0.234 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCEEEEeCCccch-HHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 80 EFLMADAVAQGADCIITIGGIQSN-HCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 80 ~~ll~~a~~~G~~~vVt~g~s~GN-hg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
.+.+.+|...|++.|+..-+.-+. ....+...|..+|+.+.+=+.+.. -+......|++++-+...
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~-----------El~~a~~~ga~iiGINnR 180 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTED-----------EAKLALDCGAEIIGINTR 180 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHH-----------HHHHHHhCCCCEEEEeCC
Confidence 356778888899987654444454 688899999999999999886542 255566689999988753
No 428
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=24.47 E-value=2e+02 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=31.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcC-CcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLN-LDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~G-l~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..| . |.-|++++..|+.+| .+.+++.+.. .+...++.+|++-+
T Consensus 169 ~~vlI~g-~-~~vg~~~~~~a~~~g~~~v~~~~~~~-----------~~~~~~~~~g~~~~ 216 (340)
T cd05284 169 STVVVIG-V-GGLGHIAVQILRALTPATVIAVDRSE-----------EALKLAERLGADHV 216 (340)
T ss_pred CEEEEEc-C-cHHHHHHHHHHHHhCCCcEEEEeCCH-----------HHHHHHHHhCCcEE
Confidence 4555566 3 349999999999999 7766554321 24666788997543
No 429
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.45 E-value=2e+02 Score=24.95 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCeEEEeCCc-chhHHHHHHHHhhCCCCCeEEEEeccCCc------hhh---------H
Q 021545 196 GYIEAIKEIEQQLQTGTGGVKFDDIVVACGS-GGTIAGLSLGSWLGTLKAKVHAFSVCDDP------DYF---------Y 259 (311)
Q Consensus 196 Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGt-GGt~aGl~~~~~~~~~~~rVigV~~~g~~------~~~---------~ 259 (311)
-|...+.|+-+++.+ -++.+|.-|+ .|..-.++.+.+.. .-+++||-+..-. .+. .
T Consensus 16 ~~~~~A~~lG~~la~------~g~~lV~GGg~~GlM~a~a~ga~~~--gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~ 87 (178)
T TIGR00730 16 AYKELAAELGAYLAG------QGWGLVYGGGRVGLMGAIADAAMEN--GGTAVGVNPSGLFSGEVVHQNLTELIEVNGMH 87 (178)
T ss_pred HHHHHHHHHHHHHHH------CCCEEEECCChHhHHHHHHHHHHhc--CCeEEEecchhhhhhhccCCCCCceEEECCHH
Confidence 355667777777653 3454554443 67777777777654 4578999875311 111 1
Q ss_pred HHHHHhHhhhCCCCCCCCeEEeccCCccchHHHHHHHHHh
Q 021545 260 DYTQGLLDGLNAGVDSRDIVNIQNVSVYMTFKNILMNILM 299 (311)
Q Consensus 260 ~~i~~~~~g~~~~~~~~dvv~v~e~~~~~~~~~~~~~~~~ 299 (311)
++-..++ ...|-+|.++ .++||+.+++.-++.
T Consensus 88 ~Rk~~m~------~~sda~I~lP--GG~GTL~El~e~~~~ 119 (178)
T TIGR00730 88 ERKAMMA------ELADAFIAMP--GGFGTLEELFEVLTW 119 (178)
T ss_pred HHHHHHH------HhCCEEEEcC--CCcchHHHHHHHHHH
Confidence 1111111 1245566665 678888888776653
No 430
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=24.41 E-value=97 Score=31.21 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 90 GADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 90 G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
-+|.|| .|+ |..|.+.|..|++.|.+++++=
T Consensus 61 ~~DVvV-VG~--G~AGl~AAi~Aa~~Ga~VivlE 91 (506)
T PRK06481 61 KYDIVI-VGA--GGAGMSAAIEAKDAGMNPVILE 91 (506)
T ss_pred cCCEEE-ECc--CHHHHHHHHHHHHCCCCEEEEE
Confidence 346555 565 8999999999999999877764
No 431
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=24.39 E-value=1.9e+02 Score=27.71 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=33.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ +|.-|++++.+|+.+|.+.+++.+.. .+...++.+|++.+.
T Consensus 191 ~~vlV~Ga-~g~vG~~ai~~ak~~G~~vi~~~~~~-----------~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGA-AGGLGSYATQLARAGGGNPVAVVSSP-----------EKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCCEEe
Confidence 45555554 58899999999999999865553221 245666779987554
No 432
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=24.35 E-value=91 Score=29.67 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..|+ |-.|.++|...++.|++++++=+.
T Consensus 10 ViIVGa--G~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 10 IAVIGG--GPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEEECc--CHHHHHHHHHHhcCCCeEEEEeCC
Confidence 444565 789999999999999998887543
No 433
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=24.34 E-value=2.4e+02 Score=24.50 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=30.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..|+ .+ .|++++..|+.+|.+.+++.+.. .+...++.+|++.+
T Consensus 136 ~~vli~g~-~~-~G~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~~ 182 (271)
T cd05188 136 DTVLVLGA-GG-VGLLAAQLAKAAGARVIVTDRSD-----------EKLELAKELGADHV 182 (271)
T ss_pred CEEEEECC-CH-HHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHhCCcee
Confidence 34554554 45 99999999999997766654332 23555677786543
No 434
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=24.31 E-value=1e+02 Score=30.47 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=24.2
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 91 ~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+|.|| .|+ |-.|.+.|+.|++.|.+++++=.
T Consensus 5 ~DVvV-VG~--G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 5 VDVLV-IGG--GNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred CCEEE-ECC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 45555 564 78999999999999998877643
No 435
>PRK13057 putative lipid kinase; Reviewed
Probab=24.10 E-value=5.2e+02 Score=23.62 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=23.9
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
.+|.|+ .+|+=||+.-++.++... +. -+||-|.|+...+
T Consensus 50 ~~d~ii-v~GGDGTv~~v~~~l~~~--~~-~lgiiP~GT~Ndf 88 (287)
T PRK13057 50 GVDLVI-VGGGDGTLNAAAPALVET--GL-PLGILPLGTANDL 88 (287)
T ss_pred CCCEEE-EECchHHHHHHHHHHhcC--CC-cEEEECCCCccHH
Confidence 366554 456667777777776542 22 2788888876443
No 436
>PLN02827 Alcohol dehydrogenase-like
Probab=24.00 E-value=2.5e+02 Score=26.91 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=33.8
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ |--|++++.+|+.+|.+.++++.... .+..+++.+|++-+.
T Consensus 195 ~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~----------~~~~~a~~lGa~~~i 243 (378)
T PLN02827 195 SSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINP----------EKAEKAKTFGVTDFI 243 (378)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCH----------HHHHHHHHcCCcEEE
Confidence 45554553 67999999999999987655554322 356777889997443
No 437
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=23.98 E-value=3e+02 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 168 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 168 ~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
+++.+.+.+.+-...++.....||.- ....|+.+++.+ .++| +|+++|+|..
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIavGGGSv 93 (375)
T cd08179 42 DKVEAYLKEAGIEVEVFEGVEPDPSV-----ETVLKGAEAMRE----FEPD-WIIALGGGSP 93 (375)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCH-----HHHHHHHHHHHh----cCCC-EEEEeCCccH
Confidence 44555666544333333332334432 233455555543 3465 5678888765
No 438
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=23.93 E-value=3.2e+02 Score=25.19 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHc-CC----CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 77 RKLEFLMADAVAQ-GA----DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 77 Rkl~~ll~~a~~~-G~----~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..+.+.++++. +. .+|+..| .||-|+.+|.....+|.+.+.+.+.
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqG--fGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISG--SGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEEC--CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4555566665443 22 3566565 4999999999999999999888764
No 439
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.93 E-value=1.7e+02 Score=24.94 Aligned_cols=118 Identities=17% Similarity=0.093 Sum_probs=62.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHH
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILK 171 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~ 171 (311)
.+|-..|- |+-|+++|..++.+|++++.+-|...+ .......|.+ +.+ +++
T Consensus 37 ~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~-----------~~~~~~~~~~--------~~~------l~e-- 87 (178)
T PF02826_consen 37 KTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKP-----------EEGADEFGVE--------YVS------LDE-- 87 (178)
T ss_dssp SEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHH-----------HHHHHHTTEE--------ESS------HHH--
T ss_pred CEEEEEEE--cCCcCeEeeeeecCCceeEEecccCCh-----------hhhcccccce--------eee------hhh--
Confidence 34444553 899999999999999998888765431 1123334421 111 122
Q ss_pred HHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHH--HHHHHHhhCCCCCeEEEE
Q 021545 172 EKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIA--GLSLGSWLGTLKAKVHAF 249 (311)
Q Consensus 172 ~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~a--Gl~~~~~~~~~~~rVigV 249 (311)
.+++..--...+|.... ..+ -+..|.+++++ .+.+|+-+|-|+.+- .+..+++ ..+..-.+.
T Consensus 88 -ll~~aDiv~~~~plt~~-T~~-----li~~~~l~~mk-------~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga~l 151 (178)
T PF02826_consen 88 -LLAQADIVSLHLPLTPE-TRG-----LINAEFLAKMK-------PGAVLVNVARGELVDEDALLDALE--SGKIAGAAL 151 (178)
T ss_dssp -HHHH-SEEEE-SSSSTT-TTT-----SBSHHHHHTST-------TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEEEE
T ss_pred -hcchhhhhhhhhccccc-cce-----eeeeeeeeccc-------cceEEEeccchhhhhhhHHHHHHh--hccCceEEE
Confidence 22222200122342211 111 23356667764 689999999999854 3444444 345555666
Q ss_pred eccCC
Q 021545 250 SVCDD 254 (311)
Q Consensus 250 ~~~g~ 254 (311)
++-..
T Consensus 152 DV~~~ 156 (178)
T PF02826_consen 152 DVFEP 156 (178)
T ss_dssp SS-SS
T ss_pred ECCCC
Confidence 66544
No 440
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.92 E-value=4.6e+02 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
+++..|+ +|.-|.++|......|.+.+++.+..
T Consensus 8 ~vlItGa-sg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 8 VALVTGA-ARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3443454 57899999999999999876665543
No 441
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=23.90 E-value=3e+02 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=33.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
..|+..|+ .+..|++++.+|+.+|++.+++.+.. .+...++.+|++-+.
T Consensus 167 ~~vlV~g~-~~~vg~~~~~~a~~~g~~v~~~~~~~-----------~~~~~~~~~g~~~v~ 215 (341)
T cd08297 167 DWVVISGA-GGGLGHLGVQYAKAMGLRVIAIDVGD-----------EKLELAKELGADAFV 215 (341)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCH-----------HHHHHHHHcCCcEEE
Confidence 45665554 56799999999999999866664432 234556778876443
No 442
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.85 E-value=3.3e+02 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=24.4
Q ss_pred CEEEEeCCcc-chHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
..||| |+++ +.-|+++|....+.|.+.++.-+
T Consensus 9 ~~lIt-Gas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVM-GVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEe-CCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 34555 6654 68999999999999999777654
No 443
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=23.77 E-value=6.5e+02 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEE
Q 021545 86 AVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYL 121 (311)
Q Consensus 86 a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~i 121 (311)
.+++|+..|+ |.+++..+.+++-+|..++++.+-
T Consensus 59 ~~~~gV~AI~--Gp~ss~~~~~v~~i~~~~~IP~I~ 92 (371)
T cd06388 59 QYSRGVFAIF--GLYDKRSVHTLTSFCSALHISLIT 92 (371)
T ss_pred HHhCCceEEE--ecCCHHHHHHHHHHhhCCCCCeee
Confidence 3467766666 778889999999999999999875
No 444
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=23.77 E-value=5e+02 Score=22.78 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCC-----cccCCCCCccchH---HHHHHCC-
Q 021545 77 RKLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSK-----VLVDQDPGLIGNL---LVERLVG- 147 (311)
Q Consensus 77 Rkl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~-----~~~~~~~~~~~n~---~~~~~~G- 147 (311)
++....+....+ +++.+|... ..++.....-..+.+.|++++++-.... +.+..+....+.. .+.+.+|
T Consensus 46 ~~~~~~i~~~~~-~vdgiii~~-~~~~~~~~~i~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~g~ 123 (275)
T cd06307 46 AALAAALLRLGA-RSDGVALVA-PDHPQVRAAVARLAAAGVPVVTLVSDLPGSPRAGYVGIDNRAAGRTAAWLIGRFLGR 123 (275)
T ss_pred HHHHHHHHHHHh-cCCEEEEeC-CCcHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeEEccChHHHHHHHHHHHHHHhCC
Confidence 334445555556 888888653 3333322333455568999887753221 1111111011221 1333323
Q ss_pred --CEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEe-c-CCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEe
Q 021545 148 --AHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVI-P-VGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVA 223 (311)
Q Consensus 148 --AeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~i-p-~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~ 223 (311)
.++..+... ........+.+...+.+++.+...-.. . .+..+.. .++. .+.++.++- ..+|.||+.
T Consensus 124 ~~~~i~~i~~~-~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~~------~~~~ai~~~ 193 (275)
T cd06307 124 RPGKVAVLAGS-HRFRGHEEREMGFRSVLREEFPGLRVLETLEGLDDPA--RAYE-ATRKLLARH------PDLVGIYNA 193 (275)
T ss_pred CCCeEEEEecC-CCCcchHHHHHHHHHHHHhhCCCcEEEeeccCCCChH--HHHH-HHHHHHHhC------CCceEEEEC
Confidence 367666432 111111122233334444433222111 1 1212221 2332 344554331 358888877
Q ss_pred CCcchhHHHHHHHHhhCCC--CCeEEEEecc
Q 021545 224 CGSGGTIAGLSLGSWLGTL--KAKVHAFSVC 252 (311)
Q Consensus 224 vGtGGt~aGl~~~~~~~~~--~~rVigV~~~ 252 (311)
. . .+ .|+..++++.+. ++.|+|++-.
T Consensus 194 ~-d-~~-~g~~~al~~~g~~~di~Ivg~d~~ 221 (275)
T cd06307 194 G-G-GN-RGVIRALREAGRAGKVVFVGHELT 221 (275)
T ss_pred C-C-Ch-HHHHHHHHHcCCCCCcEEEEecCC
Confidence 4 3 34 699999998775 5677777643
No 445
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.76 E-value=4.9e+02 Score=22.65 Aligned_cols=36 Identities=8% Similarity=-0.031 Sum_probs=25.7
Q ss_pred CCCCeEEEeCCcchhHHHHHHHHhhCCC----CCeEEEEecc
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGSWLGTL----KAKVHAFSVC 252 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~~~~~~----~~rVigV~~~ 252 (311)
..+|.||+. +..++.|+..++++.+. ++.|+|++-.
T Consensus 174 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 174 SPPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 358888875 55677899999998763 5577777654
No 446
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=23.76 E-value=5.3e+02 Score=26.32 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=32.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcC---------------------C-cEEEEEcCCCcccCCCCCccchHHHHHHCCC-
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLN---------------------L-DCYLILRTSKVLVDQDPGLIGNLLVERLVGA- 148 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~G---------------------l-~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GA- 148 (311)
..+++.|||.+|...-+++--+.++ . +.++++++... ....+..+.+|.
T Consensus 161 ~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H--------~S~~kaa~~lglg 232 (522)
T TIGR03799 161 LGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGH--------YSLGKAADVLGIG 232 (522)
T ss_pred CeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCch--------HHHHHHHHHcCCC
Confidence 3577788888887654443322211 1 35677765542 234556677776
Q ss_pred --EEEEEcC
Q 021545 149 --HIELISK 155 (311)
Q Consensus 149 --eV~~v~~ 155 (311)
+|+.++.
T Consensus 233 ~~~v~~vp~ 241 (522)
T TIGR03799 233 RDNLIAIKT 241 (522)
T ss_pred cccEEEEEe
Confidence 6776654
No 447
>PRK06924 short chain dehydrogenase; Provisional
Probab=23.69 E-value=4.9e+02 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.088 Sum_probs=23.3
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
++..|+ +|.-|+++|....+.|.+++++.+.
T Consensus 4 vlItGa-sggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 4 VIITGT-SQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred EEEecC-CchHHHHHHHHHHhcCCEEEEEeCC
Confidence 333454 5799999999999999987776543
No 448
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=23.59 E-value=1e+02 Score=31.05 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.3
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+..|| |-.|.+.|..++++|++++++.+
T Consensus 214 vvIIGg--GpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 214 VLVVGG--GPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred EEEECC--CHHHHHHHHHHHHCCCcEEEEec
Confidence 444565 78999999999999999999965
No 449
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.58 E-value=3.8e+02 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 168 NILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 168 ~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
+++.+.+++.+-...+......||.- ....++.+++.+ ..+| +|+++|+|..
T Consensus 45 ~~v~~~L~~~gi~~~~f~~v~~~p~~-----~~v~~~~~~~~~----~~~D-~IIaiGGGS~ 96 (383)
T cd08186 45 DKVEPALDEHGIEYVLYNKVTPNPTV-----DQVDEAAKLGRE----FGAQ-AVIAIGGGSP 96 (383)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCH-----HHHHHHHHHHHH----cCCC-EEEEeCCccH
Confidence 44455565544333333322233331 233444455443 2465 4677887665
No 450
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=23.57 E-value=3e+02 Score=26.86 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=38.0
Q ss_pred HcCCCEEEEeCCcc-----c--hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccch---HHHHHHCCCEEEEEcCc
Q 021545 88 AQGADCIITIGGIQ-----S--NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISKE 156 (311)
Q Consensus 88 ~~G~~~vVt~g~s~-----G--Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n---~~~~~~~GAeV~~v~~~ 156 (311)
..| ++|+|++-++ + ....++-..|+..|.++.+|+.+..|. .+|. ...+...|-.+.++.+.
T Consensus 165 ~dg-~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~------~qG~rlta~eL~~~GIpvtlI~Ds 236 (363)
T PRK05772 165 NDG-DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPW------LQGSRLTVYELMEEGIKVTLITDT 236 (363)
T ss_pred CCC-CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCcc------chhHHHHHHHHHHCCCCEEEEehh
Confidence 344 4688875221 1 223444466778899999999887653 2343 23455678888887653
No 451
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=23.47 E-value=1.7e+02 Score=23.71 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEe
Q 021545 199 EAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFS 250 (311)
Q Consensus 199 t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~ 250 (311)
.++.++.+.... ..+|.+|+.+|=+. ++-++..++..|..+.+++..
T Consensus 86 ~l~~d~~~~~~~----~~~d~ivLvSgD~D-f~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 86 ALAIDALELAYK----RRIDTIVLVSGDSD-FVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHHHHhhh----cCCCEEEEEECCcc-HHHHHHHHHHcCCEEEEEccC
Confidence 356666666543 36999999999875 556667777765544444443
No 452
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=23.32 E-value=2.6e+02 Score=24.17 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=37.4
Q ss_pred chHHHHHHCCCEEEEE--cCccccccCcHHHHHHHHHHHHHcCCCcEEecCC-CCchhHHHHHHHHHHHHHHHHhcCCCC
Q 021545 138 GNLLVERLVGAHIELI--SKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVG-GSNSIGTWGYIEAIKEIEQQLQTGTGG 214 (311)
Q Consensus 138 ~n~~~~~~~GAeV~~v--~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g-~~n~~~~~Gy~t~a~EI~~Q~~~~~~~ 214 (311)
..+..++..|++.+++ ++.+....+ +..+.+..++.|=..+.+|.- +.-|. ...+..+..||...+..
T Consensus 62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~----Vp~L~~~~~~~Gi~~~h~PI~D~~aPd-~~~~~~i~~eL~~~L~~---- 132 (168)
T PF05706_consen 62 ADLERLKDWGAQDVVTLLTDHELARLG----VPDLGEAAQARGIAWHHLPIPDGSAPD-FAAAWQILEELAARLEN---- 132 (168)
T ss_dssp HHHHHHHHTT--EEEE-S-HHHHHHTT-----TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHCCCCEEEEeCcHHHHHHcC----CccHHHHHHHcCCEEEecCccCCCCCC-HHHHHHHHHHHHHHHHc----
Confidence 3577888899986655 222111111 122344455555333444532 23353 23344567888887764
Q ss_pred CCCCeEEEeCCcchhHHHHHHHH
Q 021545 215 VKFDDIVVACGSGGTIAGLSLGS 237 (311)
Q Consensus 215 ~~~D~ivv~vGtGGt~aGl~~~~ 237 (311)
+ -++++- +-+|-.=+|+.++.
T Consensus 133 g-~~V~vH-C~GGlGRtGlvAAc 153 (168)
T PF05706_consen 133 G-RKVLVH-CRGGLGRTGLVAAC 153 (168)
T ss_dssp T---EEEE--SSSSSHHHHHHHH
T ss_pred C-CEEEEE-CCCCCCHHHHHHHH
Confidence 2 234444 44444455555443
No 453
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=23.23 E-value=6.1e+02 Score=23.54 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=14.8
Q ss_pred chHHHHHHCCCEEEEEcCc
Q 021545 138 GNLLVERLVGAHIELISKE 156 (311)
Q Consensus 138 ~n~~~~~~~GAeV~~v~~~ 156 (311)
.-....+.+|++++.++-+
T Consensus 91 ~y~~~~~~~G~~v~~vp~~ 109 (332)
T PRK06425 91 EYKGYAFTHGIRISALPFN 109 (332)
T ss_pred HHHHHHHHcCCeEEEEeCC
Confidence 3466788999999988753
No 454
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.23 E-value=5e+02 Score=22.60 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 78 KLEFLMADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 78 kl~~ll~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+....+..+..++++.||.... ..+.....-..++..|++.+.+-.
T Consensus 43 ~~~~~l~~~~~~~vdgii~~~~-~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 43 KQADQIDQAIAQKVDAIIIQHG-RAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHHHHHHcCCCEEEEecC-ChhhhHHHHHHHHHcCCCEEEecC
Confidence 3344566667778998886532 223333444556788999887754
No 455
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=23.20 E-value=6e+02 Score=25.85 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
.+.++..|-+++.++.+ ++..+++++.+ .-.+--+..++ |..++.+- .+.|.
T Consensus 433 a~~L~~~g~~vvvId~d-----------~~~~~~~~~~g--~~~i~GD~~~~-----------~~L~~a~i----~~a~~ 484 (558)
T PRK10669 433 GEKLLAAGIPLVVIETS-----------RTRVDELRERG--IRAVLGNAANE-----------EIMQLAHL----DCARW 484 (558)
T ss_pred HHHHHHCCCCEEEEECC-----------HHHHHHHHHCC--CeEEEcCCCCH-----------HHHHhcCc----cccCE
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCCCeEEE
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLKAKVHA 248 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~~rVig 248 (311)
++++++.--...-+....+...++.+|++
T Consensus 485 viv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 485 LLLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEEcCChHHHHHHHHHHHHHCCCCeEEE
No 456
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.16 E-value=4.1e+02 Score=24.49 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCEEEEeCCccc-hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcC
Q 021545 80 EFLMADAVAQGADCIITIGGIQS-NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISK 155 (311)
Q Consensus 80 ~~ll~~a~~~G~~~vVt~g~s~G-Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~ 155 (311)
.+-|.+|...|++.|+..-+.=+ .....+...|..+|+.+.+=+.+.. -+......|++++-+..
T Consensus 121 ~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~-----------El~~al~~~a~iiGINn 186 (254)
T PF00218_consen 121 PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEE-----------ELERALEAGADIIGINN 186 (254)
T ss_dssp HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHH-----------HHHHHHHTT-SEEEEES
T ss_pred HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHH-----------HHHHHHHcCCCEEEEeC
Confidence 35688888999998764333333 4448999999999999999876532 25555578999998875
No 457
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.14 E-value=3e+02 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.1
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+.. | .|..|++++..|+.+|++.++.+.... .+..+++.+|++-++
T Consensus 170 ~~vlI~-g-~g~vg~~~~~lak~~G~~~v~~~~~~~----------~~~~~~~~~ga~~v~ 218 (345)
T cd08287 170 STVVVV-G-DGAVGLCAVLAAKRLGAERIIAMSRHE----------DRQALAREFGATDIV 218 (345)
T ss_pred CEEEEE-C-CCHHHHHHHHHHHHcCCCEEEEECCCH----------HHHHHHHHcCCceEe
Confidence 455544 4 489999999999999998666554332 356677889985433
No 458
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=23.08 E-value=3.3e+02 Score=26.26 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=35.8
Q ss_pred CEEEEeCCccc----hHHH--HHHHHHHHcCCcEEEEEcCCCcccCCCCCccch---HHHHHHCCCEEEEEcCc
Q 021545 92 DCIITIGGIQS----NHCR--AAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN---LLVERLVGAHIELISKE 156 (311)
Q Consensus 92 ~~vVt~g~s~G----Nhg~--AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n---~~~~~~~GAeV~~v~~~ 156 (311)
++|+|++-+.. -+|- ++-..|.+.|.++.+++.+..|. .+|. ...+...|-++.++.+.
T Consensus 148 ~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~------~qG~~lta~eL~~~GI~vtlI~Ds 215 (344)
T PRK05720 148 QGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPR------LQGARLTAWELYQAGIDVTVITDN 215 (344)
T ss_pred CEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCCh------hhhHHHHHHHHHHCCCCEEEEccc
Confidence 46888752211 1223 33445677899999999887653 1333 23456678888888753
No 459
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.07 E-value=2.8e+02 Score=21.75 Aligned_cols=50 Identities=18% Similarity=0.077 Sum_probs=34.4
Q ss_pred EEeCCccc--hHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCc
Q 021545 95 ITIGGIQS--NHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKE 156 (311)
Q Consensus 95 Vt~g~s~G--Nhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~ 156 (311)
++++||.| +=..++|..-++.|.++++..+... ...++..|.+.+.++.+
T Consensus 3 i~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~------------~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 3 IATGGTRGHVYPFLALARALRRRGHEVRLATPPDF------------RERVEAAGLEFVPIPGD 54 (139)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGG------------HHHHHHTT-EEEESSSC
T ss_pred EEEcCChhHHHHHHHHHHHHhccCCeEEEeecccc------------eecccccCceEEEecCC
Confidence 34445555 3467888888899999998876542 45568899999888765
No 460
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=23.07 E-value=1e+02 Score=29.35 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=23.4
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+..|| |-.|.++|.+.++.|++++++=.
T Consensus 4 V~IvGg--G~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 4 TVILGC--GLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred EEEECC--CHHHHHHHHHHHcCCCeEEEecC
Confidence 333465 78999999999999999988853
No 461
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=23.06 E-value=3.1e+02 Score=25.25 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=31.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHI 150 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV 150 (311)
++|+..| .|.-|++++.+|+.+|+..++++... ..+...++.+|+.+
T Consensus 169 ~~vlI~g--~g~vg~~~~~~a~~~g~~~v~~~~~~----------~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVIG--CGPVGLCAVLSAQVLGAARVFAVDPV----------PERLERAAALGAEP 215 (344)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCceEEEEcCC----------HHHHHHHHHhCCeE
Confidence 4555454 37899999999999998434444222 13466677799864
No 462
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=23.06 E-value=3.5e+02 Score=25.06 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=33.0
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIE 151 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~ 151 (311)
++|+..| .|-.|.+++..|+.+|.+.++++.... .+...++.+|++.+
T Consensus 177 ~~vlI~g--~g~vg~~~~~~a~~~G~~~v~~~~~~~----------~~~~~~~~~g~~~~ 224 (350)
T cd08240 177 EPVVIIG--AGGLGLMALALLKALGPANIIVVDIDE----------AKLEAAKAAGADVV 224 (350)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCCeEEEEeCCH----------HHHHHHHHhCCcEE
Confidence 4566564 378999999999999996555553321 24666677898643
No 463
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=23.04 E-value=96 Score=28.87 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=26.5
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchh
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDY 257 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~ 257 (311)
.++-+|||+.+.+++.+.+ .++.+|+|+++...+..
T Consensus 113 ~ilDlGTGSG~iai~la~~--~~~~~V~a~Dis~~Al~ 148 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE--GPDAEVIAVDISPDALA 148 (280)
T ss_pred cEEEecCChHHHHHHHHhh--CcCCeEEEEECCHHHHH
Confidence 5777777777766666554 57789999999887653
No 464
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=22.98 E-value=1.8e+02 Score=28.47 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhhH
Q 021545 217 FDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYFY 259 (311)
Q Consensus 217 ~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~~ 259 (311)
-|.||+.+|.|..+..++.+. .-..+|.+|++..-+.|-+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaq---AGA~~vYAvEAS~MAqyA~ 216 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQ---AGAKKVYAVEASEMAQYAR 216 (517)
T ss_pred CCcEEEEecCCccHHHHHHHH---hCcceEEEEehhHHHHHHH
Confidence 478999999998776665554 3456999999877665443
No 465
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=22.97 E-value=3.5e+02 Score=24.12 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHc-C----CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 77 RKLEFLMADAVAQ-G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 77 Rkl~~ll~~a~~~-G----~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
|+..+.++.+.++ + ..+|+..| .||-|+.+|....++|.+.+.+.+..
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqG--fGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQG--LGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEEC--CCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 3444555554433 2 14566565 49999999999999999998887653
No 466
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=22.97 E-value=2.4e+02 Score=26.23 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=30.7
Q ss_pred HHhHHHHHHHHHHc-C----CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 76 VRKLEFLMADAVAQ-G----ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 76 ~Rkl~~ll~~a~~~-G----~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
.-.++..+..+++. + .++++..|. |+.|+++|..++.+|.+.+++-+
T Consensus 131 ~~~Ae~ai~~al~~~~~~l~gk~v~IiG~--G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 131 IPTAEGAIMMAIEHTDFTIHGSNVMVLGF--GRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred HhHHHHHHHHHHHhcCCCCCCCEEEEEcC--hHHHHHHHHHHHHCCCEEEEEeC
Confidence 34455555555543 1 145555564 88999999999999987665543
No 467
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.93 E-value=3.5e+02 Score=23.54 Aligned_cols=12 Identities=8% Similarity=-0.343 Sum_probs=8.5
Q ss_pred CCCeEEEEeccC
Q 021545 242 LKAKVHAFSVCD 253 (311)
Q Consensus 242 ~~~rVigV~~~g 253 (311)
..++|+.+.+..
T Consensus 181 ~gi~v~~i~pg~ 192 (256)
T PRK12745 181 EGIGVYEVRPGL 192 (256)
T ss_pred hCCEEEEEecCC
Confidence 457888888754
No 468
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=22.92 E-value=3.1e+02 Score=25.35 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=32.2
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
.+|+..| .|..|++++..|+.+|++.+++.+.. .+...++.+|++-++
T Consensus 171 ~~vlV~g--~g~vG~~~~~~a~~~G~~v~~~~~~~-----------~~~~~~~~~g~~~vi 218 (337)
T cd05283 171 KRVGVVG--IGGLGHLAVKFAKALGAEVTAFSRSP-----------SKKEDALKLGADEFI 218 (337)
T ss_pred CEEEEEC--CcHHHHHHHHHHHHcCCeEEEEcCCH-----------HHHHHHHHcCCcEEe
Confidence 3444443 38899999999999999765554332 245566778976544
No 469
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=22.84 E-value=1.1e+02 Score=29.89 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=21.3
Q ss_pred EEeCCccchHHHHHHHHHHHcC-CcEEEEE
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLN-LDCYLIL 123 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~G-l~~~ivv 123 (311)
|..|+ |-.|.+.|..|++.| .+++++=
T Consensus 3 vVVG~--G~AGl~AA~~aa~~G~~~V~vlE 30 (439)
T TIGR01813 3 VVVGS--GFAGLSAALSAKKAGAANVVLLE 30 (439)
T ss_pred EEECC--CHHHHHHHHHHHHcCCccEEEEe
Confidence 33565 889999999999999 8777664
No 470
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=22.83 E-value=4.2e+02 Score=24.42 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCch-------------hhHHHHHHhHhhhCCC
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPD-------------YFYDYTQGLLDGLNAG 272 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~-------------~~~~~i~~~~~g~~~~ 272 (311)
..|+++|..|.-|+.++-.++- ...||.-+|-.-+.- ..+++.+.+++.++++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk----~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ 95 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK----AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIR 95 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh----CCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCc
Confidence 3799999888877665444443 366777777654321 1257778899999873
No 471
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.77 E-value=3.2e+02 Score=26.94 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=35.6
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCC-cEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNL-DCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl-~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ ||.|.-+|..+.++|. +.+++.+...... +........++..|.+++.
T Consensus 274 ~~VvViGg--G~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~---~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 274 KRVVVIGG--GNTAMDAARTAKRLGAESVTIVYRRGREEM---PASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CeEEEECC--CHHHHHHHHHHHHcCCCeEEEeeecCcccC---CCCHHHHHHHHHCCCEEEe
Confidence 45555665 8999999999999998 6777766432111 1111224456677877664
No 472
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=22.77 E-value=4.7e+02 Score=22.64 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHc-CCCcEEe
Q 021545 106 RAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE-GRRPYVI 184 (311)
Q Consensus 106 ~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~-g~~~y~i 184 (311)
-++|-+...-|++.+||-+-.-- | |--+....++-+|+....+. ..+.++++.+.++... ....++.
T Consensus 38 e~l~~Y~s~~g~~iivVFDA~~v-----~---g~~~~~~~~~vsvvyT~~~E----TADs~IEr~~~el~~~~t~~V~Va 105 (173)
T COG3688 38 EALAEYQSFTGYKIIVVFDAHYV-----P---GVGREYKNHRVSVVYTKEGE----TADSFIERYVAELRNAATHQVIVA 105 (173)
T ss_pred HHHHHhhcccCceEEEEEEcccc-----c---cccccccccceEEEEecCCc----cHHHHHHHHHHHHhccccceEEEE
Confidence 36677777889999888765431 1 11223344677788776432 1234677777777632 2244555
Q ss_pred cCCCCchhHHHHH---HHHHHHHHHHHh
Q 021545 185 PVGGSNSIGTWGY---IEAIKEIEQQLQ 209 (311)
Q Consensus 185 p~g~~n~~~~~Gy---~t~a~EI~~Q~~ 209 (311)
..+......+.|+ .-.+.|++..+.
T Consensus 106 TSD~~EQ~~Ifg~GA~r~Sarel~~ev~ 133 (173)
T COG3688 106 TSDRAEQWTIFGQGALRMSARELYQEVE 133 (173)
T ss_pred eCchhhhhhhhccchHHHhHHHHHHHHH
Confidence 5554445555554 335788877765
No 473
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.75 E-value=7e+02 Score=24.07 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=54.6
Q ss_pred hHHHHHHCCCEEEEEcCcccccc-----CcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCC
Q 021545 139 NLLVERLVGAHIELISKEEYSKI-----GSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTG 213 (311)
Q Consensus 139 n~~~~~~~GAeV~~v~~~~~~~~-----~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~ 213 (311)
++...-..||+.+.++...|-.. -..+-+++..+...+.|.+.|+.-+- .-..+-.....+..+++.+
T Consensus 18 ~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~----~~~~~~~~~~~~~l~~l~e--- 90 (347)
T COG0826 18 DLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNT----LLHNDELETLERYLDRLVE--- 90 (347)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc----ccccchhhHHHHHHHHHHH---
Confidence 34445558999999874322110 11223455566666667666655332 2212211223455566654
Q ss_pred CCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEE
Q 021545 214 GVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHA 248 (311)
Q Consensus 214 ~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVig 248 (311)
..+|.|+++= .|+....++.+|+.+||.
T Consensus 91 -~GvDaviv~D------pg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 91 -LGVDAVIVAD------PGLIMLARERGPDLPIHV 118 (347)
T ss_pred -cCCCEEEEcC------HHHHHHHHHhCCCCcEEE
Confidence 3489999854 456777788889998884
No 474
>PRK06475 salicylate hydroxylase; Provisional
Probab=22.73 E-value=1.1e+02 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=23.8
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..|| |=.|.++|.+.++.|++++++=+.
T Consensus 5 V~IvGg--GiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 5 PLIAGA--GVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEecC
Confidence 444565 788999999999999998887543
No 475
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=22.70 E-value=2e+02 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCEEEEeCCcc-chHHHHHHHHHHHcCCcEEEE
Q 021545 79 LEFLMADAVAQGADCIITIGGIQ-SNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 79 l~~ll~~a~~~G~~~vVt~g~s~-GNhg~AlA~~a~~~Gl~~~iv 122 (311)
+...+.++++.|++++|..|.+. +++...+..+|++.|++++..
T Consensus 34 ~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 78 (293)
T cd00530 34 AKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAA 78 (293)
T ss_pred HHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEe
Confidence 33457778899999999876432 566777888898999876543
No 476
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.69 E-value=2.2e+02 Score=26.03 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=32.4
Q ss_pred CEEEEeCCccchHHHHHHHHHHHc-CCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYL-NLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~-Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|..|++++..|+.+ |.+.+.+.+.. .+...++.+|++-++
T Consensus 150 ~~vlV~ga-~g~vg~~~~~~ak~~~G~~vi~~~~~~-----------~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 150 RALLIIGG-AGGVGSILIQLARQLTGLTVIATASRP-----------ESQEWVLELGAHHVI 199 (336)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHhCCCEEEEEcCcH-----------HHHHHHHHcCCCEEE
Confidence 34554553 578899999999988 98876664432 235556778986443
No 477
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.60 E-value=6.1e+02 Score=23.35 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcccCCCCC-ccchHHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHc-CCCcEEe
Q 021545 107 AAAVAAKYLNLDCYLILRTSKVLVDQDPG-LIGNLLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKE-GRRPYVI 184 (311)
Q Consensus 107 AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~-~~~n~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~-g~~~y~i 184 (311)
++.+.|+.+|++.+-++.... ...+++. ...-+..++..+..++++... .. .+.++.++++ +-+...+
T Consensus 188 af~Yl~~~~gl~~~~~~~~~~-~~eps~~~l~~l~~~ik~~~v~~If~e~~-~~--------~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 188 AYGYFEKRYGLTQAGVFTIDP-EIDPGAKRLAKIRKEIKEKGATCVFAEPQ-FH--------PKIAETLAEGTGAKVGEL 257 (286)
T ss_pred cHHHHHHHcCCceeeeecCCC-CCCCCHHHHHHHHHHHHHcCCcEEEecCC-CC--------hHHHHHHHHhcCceEEEe
Confidence 889999999999876653221 1112221 122355677889999988763 22 1223344433 2222222
Q ss_pred -cCCCCchhHHHHHHHHHHHHHHHHh
Q 021545 185 -PVGGSNSIGTWGYIEAIKEIEQQLQ 209 (311)
Q Consensus 185 -p~g~~n~~~~~Gy~t~a~EI~~Q~~ 209 (311)
|.+.........|..+..+..+++.
T Consensus 258 ~~l~~~~~~~~~~Y~~~m~~n~~~i~ 283 (286)
T cd01019 258 DPLGGLIELGKNSYVNFLRNLADSLA 283 (286)
T ss_pred cccccccccchhhHHHHHHHHHHHHH
Confidence 3332111122467666666666553
No 478
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.57 E-value=4.9e+02 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
..|+.+++.+ ..+| +|+++|+|..
T Consensus 72 v~~~~~~~~~----~~~D-~IiavGGGS~ 95 (380)
T cd08185 72 VMEGAALARE----EGCD-FVVGLGGGSS 95 (380)
T ss_pred HHHHHHHHHH----cCCC-EEEEeCCccH
Confidence 3455555543 2465 5677887764
No 479
>PRK08278 short chain dehydrogenase; Provisional
Probab=22.53 E-value=3.9e+02 Score=23.94 Aligned_cols=11 Identities=18% Similarity=-0.137 Sum_probs=7.4
Q ss_pred CCCeEEEEecc
Q 021545 242 LKAKVHAFSVC 252 (311)
Q Consensus 242 ~~~rVigV~~~ 252 (311)
..++|..|.+.
T Consensus 185 ~~I~v~~i~Pg 195 (273)
T PRK08278 185 DGIAVNALWPR 195 (273)
T ss_pred cCcEEEEEeCC
Confidence 35777777765
No 480
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.53 E-value=5.3e+02 Score=22.56 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=8.9
Q ss_pred CCCeEEEEeccC
Q 021545 242 LKAKVHAFSVCD 253 (311)
Q Consensus 242 ~~~rVigV~~~g 253 (311)
..++|..|.+..
T Consensus 176 ~gi~v~~v~Pg~ 187 (260)
T PRK12823 176 HGIRVNAVAPGG 187 (260)
T ss_pred cCcEEEEEecCc
Confidence 468888888764
No 481
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=22.51 E-value=2.9e+02 Score=25.39 Aligned_cols=53 Identities=25% Similarity=0.188 Sum_probs=35.9
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCCCCccchHHHHHHCCCEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQDPGLIGNLLVERLVGAHIEL 152 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n~~~~~~~GAeV~~ 152 (311)
++|+..|+ .|.-|++++..|+.+|.+.+++.+.... ...+...++.+|++-+.
T Consensus 148 ~~vlI~g~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~-------~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 148 DWVIQNGA-NSAVGQAVIQLAKLLGIKTINVVRDRPD-------LEELKERLKALGADHVL 200 (341)
T ss_pred CEEEEccc-hhHHHHHHHHHHHHcCCeEEEEEcCCCc-------chhHHHHHHhcCCCEEE
Confidence 56666654 5789999999999999997777653210 01235556778987544
No 482
>PRK07538 hypothetical protein; Provisional
Probab=22.47 E-value=1.2e+02 Score=29.35 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=23.3
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEcC
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILRT 125 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~ 125 (311)
|+..|| |=.|.++|.+.++.|+++++|=..
T Consensus 3 V~IVGa--G~aGl~~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 3 VLIAGG--GIGGLTLALTLHQRGIEVVVFEAA 32 (413)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCcEEEEEcC
Confidence 344465 678999999999999998887543
No 483
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=22.46 E-value=1.6e+02 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.9
Q ss_pred eCCccchHHHHHHHHHHHcCCcEEEEEcCCC
Q 021545 97 IGGIQSNHCRAAAVAAKYLNLDCYLILRTSK 127 (311)
Q Consensus 97 ~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~ 127 (311)
.|| |-.|+.+|.+|+++|++++++-|...
T Consensus 7 lGG--GQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 7 LGG--GQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EcC--cHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 365 67999999999999999999987654
No 484
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=22.37 E-value=1.1e+02 Score=31.22 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=22.7
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|..|+ |..|.+.|..|++.|.+++++-.
T Consensus 3 lVVG~--G~AGl~AA~~aae~G~~V~lleK 30 (566)
T TIGR01812 3 VIVGA--GLAGLRAAVEAAKAGLNTAVISK 30 (566)
T ss_pred EEECc--cHHHHHHHHHHHHCCCcEEEEec
Confidence 33565 88999999999999999888753
No 485
>PRK05868 hypothetical protein; Validated
Probab=22.36 E-value=1.3e+02 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=23.2
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
|+..|| |-.|.++|...++.|++++++=.
T Consensus 4 V~IvGg--G~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 4 VVVSGA--SVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred EEEECC--CHHHHHHHHHHHhCCCCEEEEcC
Confidence 444565 78899999999999999888743
No 486
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=22.30 E-value=8.3e+02 Score=24.75 Aligned_cols=134 Identities=14% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHcCCcEEEEEcCCCcccCCC-CCccchHHHHHHC--CCEEEEEcCccccccC---cHHHHHHHHHHHHHcCCCc
Q 021545 108 AAVAAKYLNLDCYLILRTSKVLVDQD-PGLIGNLLVERLV--GAHIELISKEEYSKIG---SVTLTNILKEKLLKEGRRP 181 (311)
Q Consensus 108 lA~~a~~~Gl~~~ivv~~~~~~~~~~-~~~~~n~~~~~~~--GAeV~~v~~~~~~~~~---~~~~~~~~~~~l~~~g~~~ 181 (311)
+...|+++|.++++-.---.+-.... |++.+--...-+. |++-+..+.++-.-.. ..+.+.+.+++.++.....
T Consensus 264 ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 343 (480)
T cd00288 264 LIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHR 343 (480)
T ss_pred HHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Q ss_pred EEecCCCCch----hHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEecc
Q 021545 182 YVIPVGGSNS----IGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVC 252 (311)
Q Consensus 182 y~ip~g~~n~----~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~ 252 (311)
.+........ .........+.++.+.++ .++||+++=||.|+.-++.+- |+..|++|...
T Consensus 344 ~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~-------akaIVv~T~SG~TA~~lS~~R----P~~pIiavT~~ 407 (480)
T cd00288 344 VLFNEMRRLTPRPTSTTEAVAMSAVRAAFELG-------AKAIVVLTTSGRTARLVSKYR----PNAPIIAVTRN 407 (480)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHHhcC-------CCEEEEECCCcHHHHHHHhhC----CCCCEEEEcCC
No 487
>PRK05855 short chain dehydrogenase; Validated
Probab=22.29 E-value=5.4e+02 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=20.6
Q ss_pred EEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 94 IITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 94 vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
++..|| +|--|.++|...+..|.+++++-+
T Consensus 318 ~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r 347 (582)
T PRK05855 318 VVVTGA-GSGIGRETALAFAREGAEVVASDI 347 (582)
T ss_pred EEEECC-cCHHHHHHHHHHHHCCCEEEEEeC
Confidence 333454 467888888888888888666544
No 488
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.18 E-value=7.8e+02 Score=26.05 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=26.1
Q ss_pred CCcEEecCCCC--chhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeCCcchh
Q 021545 179 RRPYVIPVGGS--NSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVACGSGGT 229 (311)
Q Consensus 179 ~~~y~ip~g~~--n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt 229 (311)
++..++|.+.. ++.-...- ....++.+++. ..+|+|++-++....
T Consensus 622 ~~l~~l~~g~~~~~~~~ll~~-~~~~~~l~~l~-----~~yD~IiID~pp~~~ 668 (754)
T TIGR01005 622 ASLPMLDSGLFPHGITELLAS-PAMFSLVIHAR-----LYSDCVVVDVGTADP 668 (754)
T ss_pred CCeeEecCCCCCCCHHHHhcc-HHHHHHHHHHH-----hhCCEEEEcCCCcch
Confidence 34678887632 32222111 12345666665 469999999987654
No 489
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=22.13 E-value=3.4e+02 Score=26.46 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=48.5
Q ss_pred ccCCCCCchhhhcCCCCcc-----ccccCCCCCCccccCC-C--CCCC----------------CCCCCCC-CCCCCCch
Q 021545 20 KTSYAPPSWASHLAPIPSH-----VFSLGHFPTPIHKWNL-P--NLPH----------------NTERDDL-SGMQLSGN 74 (311)
Q Consensus 20 ~~~~~~p~w~~~l~~~p~~-----~~~~~~~~TPL~~~~~-~--~Ls~----------------~vKRedl-~~~~~ggn 74 (311)
.+=+.||++.+.+.- |++ |-.+.+..-||.--.+ | .|+. .+|-|+. .+..+.=+
T Consensus 96 ~D~~~P~~~~~~F~G-P~fGi~G~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~ 174 (366)
T cd08148 96 EDLEFPEEYKKLFPG-PKFGIDGIRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPL 174 (366)
T ss_pred EEeeCCHHHHhcCCC-CCCCchhHHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcH
Confidence 456788888876655 332 2224444556553111 1 2221 3554443 33435667
Q ss_pred hHHhHHH--HHHHHH-HcCCCEEEEeC--CccchHHHHHHHHHHHcCCcEEEEE
Q 021545 75 KVRKLEF--LMADAV-AQGADCIITIG--GIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 75 K~Rkl~~--ll~~a~-~~G~~~vVt~g--~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
+.|-... .+.+|. +.|.+++...- +. ..-.+.=|-.+...|.++..+-
T Consensus 175 ~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~ 227 (366)
T cd08148 175 RDRITEVAAALDRVQEETGEKKLYAVNVTAG-TFEIIERAERALELGANMLMVD 227 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEccCC-HHHHHHHHHHHHHhCCCEEEEe
Confidence 7774332 244433 34544432111 11 1445556666666666655443
No 490
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.09 E-value=6.4e+02 Score=23.56 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=65.5
Q ss_pred HHhHHHHHHHHHHcCCCEEE---EeCCccchHHHH-------------HHHHHHHcCCcEEEEEcCCCcccCCCCCccch
Q 021545 76 VRKLEFLMADAVAQGADCII---TIGGIQSNHCRA-------------AAVAAKYLNLDCYLILRTSKVLVDQDPGLIGN 139 (311)
Q Consensus 76 ~Rkl~~ll~~a~~~G~~~vV---t~g~s~GNhg~A-------------lA~~a~~~Gl~~~ivv~~~~~~~~~~~~~~~n 139 (311)
.|....+|.+.++.|...|. |.|-..|..-.. +=..|+++|+-.+-|+.+.. -
T Consensus 94 ~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e-----------~ 162 (268)
T PF09370_consen 94 FRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEE-----------Q 162 (268)
T ss_dssp T--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHH-----------H
T ss_pred CCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHH-----------H
Confidence 45666778888888877766 445445544333 44578888888888875432 2
Q ss_pred HHHHHHCCCEEEEEcCccccccCcHHHHHHHHHHHHHcCCCcEEecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 021545 140 LLVERLVGAHIELISKEEYSKIGSVTLTNILKEKLLKEGRRPYVIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDD 219 (311)
Q Consensus 140 ~~~~~~~GAeV~~v~~~~~~~~~~~~~~~~~~~~l~~~g~~~y~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ 219 (311)
...|..-||+|+.+.-+ +-..+ . +. ..+.....-+....+||.+...+ .++|.
T Consensus 163 A~~M~~AGaDiiv~H~G-lT~gG---~-------~G------------a~~~~sl~~a~~~~~~i~~aa~~----v~~di 215 (268)
T PF09370_consen 163 ARAMAEAGADIIVAHMG-LTTGG---S-------IG------------AKTALSLEEAAERIQEIFDAARA----VNPDI 215 (268)
T ss_dssp HHHHHHHT-SEEEEE-S-S--------------------------------S--HHHHHHHHHHHHHHHHC----C-TT-
T ss_pred HHHHHHcCCCEEEecCC-ccCCC---C-------cC------------ccccCCHHHHHHHHHHHHHHHHH----hCCCe
Confidence 44566678888766432 11000 0 00 00111223344667788777764 57888
Q ss_pred EEEeCCcchhHHHHHHHHhhCCCCCe-EEEEeccCCch
Q 021545 220 IVVACGSGGTIAGLSLGSWLGTLKAK-VHAFSVCDDPD 256 (311)
Q Consensus 220 ivv~vGtGGt~aGl~~~~~~~~~~~r-VigV~~~g~~~ 256 (311)
|+++-|+-=.--==+.++. .+++ ++|.--.-+-+
T Consensus 216 i~l~hGGPI~~p~D~~~~l---~~t~~~~Gf~G~Ss~E 250 (268)
T PF09370_consen 216 IVLCHGGPIATPEDAQYVL---RNTKGIHGFIGASSME 250 (268)
T ss_dssp EEEEECTTB-SHHHHHHHH---HH-TTEEEEEESTTTT
T ss_pred EEEEeCCCCCCHHHHHHHH---hcCCCCCEEecccchh
Confidence 8888765322211122222 2345 77765554443
No 491
>PRK08226 short chain dehydrogenase; Provisional
Probab=22.08 E-value=3e+02 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=8.1
Q ss_pred CCCeEEEEeccC
Q 021545 242 LKAKVHAFSVCD 253 (311)
Q Consensus 242 ~~~rVigV~~~g 253 (311)
..++|..|.+..
T Consensus 176 ~~i~v~~i~pg~ 187 (263)
T PRK08226 176 SGIRVNAICPGY 187 (263)
T ss_pred cCcEEEEEecCc
Confidence 367888887653
No 492
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=21.87 E-value=3.3e+02 Score=19.99 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHcC---CcEEEEEcCCCcccCCCCCccch-HHHHHHCCCEEE
Q 021545 102 SNHCRAAAVAAKYLN---LDCYLILRTSKVLVDQDPGLIGN-LLVERLVGAHIE 151 (311)
Q Consensus 102 GNhg~AlA~~a~~~G---l~~~ivv~~~~~~~~~~~~~~~n-~~~~~~~GAeV~ 151 (311)
||.|.+++......| .+..++..... .+ ..+.+.+|.++.
T Consensus 8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~----------~~~~~~~~~~~~~~~ 51 (96)
T PF03807_consen 8 GNMGSALARGLLASGIKPHEVIIVSSRSP----------EKAAELAKEYGVQAT 51 (96)
T ss_dssp SHHHHHHHHHHHHTTS-GGEEEEEEESSH----------HHHHHHHHHCTTEEE
T ss_pred CHHHHHHHHHHHHCCCCceeEEeeccCcH----------HHHHHHHHhhccccc
Confidence 999999999999999 66665543332 12 334466776554
No 493
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=21.84 E-value=5.2e+02 Score=24.86 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEeCCcchhHHHHHHHHhh-----------------CCCCCeEEEEecc
Q 021545 201 IKEIEQQLQTGTGGVKFDDIVVACGSGGTIAGLSLGSWL-----------------GTLKAKVHAFSVC 252 (311)
Q Consensus 201 a~EI~~Q~~~~~~~~~~D~ivv~vGtGGt~aGl~~~~~~-----------------~~~~~rVigV~~~ 252 (311)
..++.+++.+ ..+| +|+++|+|.. .=++++... ..+..++|.|...
T Consensus 74 v~~~~~~~~~----~~~D-~IIavGGGS~-iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 74 VKDGLAVFKK----EGCD-FIISIGGGSP-HDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred HHHHHHHHHh----cCCC-EEEEeCCcHH-HHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 4455555543 3465 5677888765 333333321 1245678888764
No 494
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=21.73 E-value=1.3e+02 Score=29.68 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 95 ITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 95 Vt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
|..|| |=.|...|+++++.|.++.++.
T Consensus 3 iVVGg--G~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 3 IVVGG--GHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEESS--SHHHHHHHHHHHHTT--EEEEE
T ss_pred EEECC--CHHHHHHHHHHHHCCCCEEEEe
Confidence 33465 7789999999999999999994
No 495
>PRK07236 hypothetical protein; Provisional
Probab=21.73 E-value=1.3e+02 Score=28.73 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=25.2
Q ss_pred EEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCC
Q 021545 93 CIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTS 126 (311)
Q Consensus 93 ~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~ 126 (311)
.|+..|| |=.|.++|.+.++.|+++++|=...
T Consensus 8 ~ViIVGa--G~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 8 RAVVIGG--SLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred eEEEECC--CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3444565 7889999999999999998886543
No 496
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=21.70 E-value=2.7e+02 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.3
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEE
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLI 122 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~iv 122 (311)
+.++.+| .|+-|+++|..++.+|.+++++
T Consensus 24 k~vvV~G--YG~vG~g~A~~lr~~Ga~V~V~ 52 (162)
T PF00670_consen 24 KRVVVIG--YGKVGKGIARALRGLGARVTVT 52 (162)
T ss_dssp SEEEEE----SHHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEeC--CCcccHHHHHHHhhCCCEEEEE
Confidence 3444455 6999999999999999888766
No 497
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=21.67 E-value=6.9e+02 Score=23.63 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred HHHHHHcCCCEEEEeCCccchHHHHHHHHHHHcCCcEEEEEcCCCcccCCC-C------Cc---cch--HH-HHHHCCCE
Q 021545 83 MADAVAQGADCIITIGGIQSNHCRAAAVAAKYLNLDCYLILRTSKVLVDQD-P------GL---IGN--LL-VERLVGAH 149 (311)
Q Consensus 83 l~~a~~~G~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~~~~~~~~~~-~------~~---~~n--~~-~~~~~GAe 149 (311)
.+++.++++..|| |..+|....+++-.+...+++++............. + .. ..+ .. +.+.+|.+
T Consensus 85 ~~~Li~~~V~~ii--G~~~s~~~~a~~~~~~~~~ip~i~~~s~~~~l~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k 162 (369)
T PRK15404 85 ANKVVNDGIKYVI--GHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYILEKVKPK 162 (369)
T ss_pred HHHHHhCCceEEE--cCCCchhHHHhHHHHHHCCCeEEecCCCCHHHhcCCCceEEeCCCCcHHHHHHHHHHHHHhcCCC
Confidence 3444456666666 545567778899999999987665321111000000 0 00 000 11 12233543
Q ss_pred -EEEEcC-ccccccCcHHHHHHHHHHHHHcCCCcE---EecCCCCchhHHHHHHHHHHHHHHHHhcCCCCCCCCeEEEeC
Q 021545 150 -IELISK-EEYSKIGSVTLTNILKEKLLKEGRRPY---VIPVGGSNSIGTWGYIEAIKEIEQQLQTGTGGVKFDDIVVAC 224 (311)
Q Consensus 150 -V~~v~~-~~~~~~~~~~~~~~~~~~l~~~g~~~y---~ip~g~~n~~~~~Gy~t~a~EI~~Q~~~~~~~~~~D~ivv~v 224 (311)
|..+.. ..|.. ...+...+.+++.|.... .+|.+..+ |.....+| .. ..+|.|++.
T Consensus 163 ~va~i~~d~~~g~----~~~~~~~~~~~~~G~~v~~~~~~~~g~~D------~~~~v~~l----~~----~~~d~v~~~- 223 (369)
T PRK15404 163 RIAVLHDKQQYGE----GLARSVKDGLKKAGANVVFFEGITAGDKD------FSALIAKL----KK----ENVDFVYYG- 223 (369)
T ss_pred EEEEEeCCCchhH----HHHHHHHHHHHHcCCEEEEEEeeCCCCCc------hHHHHHHH----Hh----cCCCEEEEC-
Confidence 443432 22321 122334445555453321 12332211 22233333 22 358988764
Q ss_pred CcchhHHHHHHHHhhCCCCCeEEEEeccCC
Q 021545 225 GSGGTIAGLSLGSWLGTLKAKVHAFSVCDD 254 (311)
Q Consensus 225 GtGGt~aGl~~~~~~~~~~~rVigV~~~g~ 254 (311)
|.+..+.-+...++..+.+.++++......
T Consensus 224 ~~~~~~~~~~k~~~~~G~~~~~i~~~~~~~ 253 (369)
T PRK15404 224 GYHPEMGQILRQAREAGLKTQFMGPEGVGN 253 (369)
T ss_pred CCchHHHHHHHHHHHCCCCCeEEecCcCCC
Confidence 444455667788888888888887654443
No 498
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=21.66 E-value=1.2e+02 Score=30.96 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=23.9
Q ss_pred CCEEEEeCCccchHHHHHHHHHHHcCCcEEEEE
Q 021545 91 ADCIITIGGIQSNHCRAAAVAAKYLNLDCYLIL 123 (311)
Q Consensus 91 ~~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv 123 (311)
+|.|| .|+ |..|.+.|..|++.|.+++++-
T Consensus 5 ~DVvV-VG~--G~AGl~AAl~Aa~~G~~VivlE 34 (549)
T PRK12834 5 ADVIV-VGA--GLAGLVAAAELADAGKRVLLLD 34 (549)
T ss_pred CCEEE-ECc--CHHHHHHHHHHHHCCCeEEEEe
Confidence 45455 564 8999999999999999987764
No 499
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.66 E-value=6.1e+02 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=25.6
Q ss_pred CCCeEEEeCCcchhHHHHHHHHhhCCCCCeEEEEeccCCchhh
Q 021545 216 KFDDIVVACGSGGTIAGLSLGSWLGTLKAKVHAFSVCDDPDYF 258 (311)
Q Consensus 216 ~~D~ivv~vGtGGt~aGl~~~~~~~~~~~rVigV~~~g~~~~~ 258 (311)
.+|.||+ +|+=||+.-++.++... .+...+|+-+.|+..++
T Consensus 57 ~~d~ivv-~GGDGTl~~v~~~l~~~-~~~~~lgiiP~Gt~N~~ 97 (293)
T TIGR00147 57 GVDTVIA-GGGDGTINEVVNALIQL-DDIPALGILPLGTANDF 97 (293)
T ss_pred CCCEEEE-ECCCChHHHHHHHHhcC-CCCCcEEEEcCcCHHHH
Confidence 3665554 66667777777777543 22346788888876554
No 500
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.66 E-value=1.2e+02 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=23.5
Q ss_pred CEEEEeCCccchHHHHHHHHHHHcCCcEEEEEc
Q 021545 92 DCIITIGGIQSNHCRAAAVAAKYLNLDCYLILR 124 (311)
Q Consensus 92 ~~vVt~g~s~GNhg~AlA~~a~~~Gl~~~ivv~ 124 (311)
+.|| .|| |..|.+.|..++++|+++.++=+
T Consensus 5 DvvV-IGg--GpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 5 QAVI-IGF--GKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CEEE-ECC--CHhHHHHHHHHHHCCCeEEEEcC
Confidence 4455 465 78999999999999999776653
Done!