BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021549
MSNDYLTRCSSIYHQVGRPLSQKRRCGSAIYRNFSTWSASLISPVASLVVRPPSSLAVVA
CVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKR
CAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEV
KCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYW
ELIHGILQEFWWENVVPAKEALSMGREELATSYDPTSTHRLTGLAIVKSLKLASESKLLC
KEIAGHVEFFR

High Scoring Gene Products

Symbol, full name Information P value
AT1G67660 protein from Arabidopsis thaliana 2.7e-91
AT1G13810 protein from Arabidopsis thaliana 5.7e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021549
        (311 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2824070 - symbol:AT1G67660 species:3702 "Arabi...   910  2.7e-91   1
TAIR|locus:2014874 - symbol:AT1G13810 species:3702 "Arabi...   388  5.7e-36   1


>TAIR|locus:2824070 [details] [associations]
            symbol:AT1G67660 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR011604
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0090305
            Gene3D:3.90.320.10 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
            InterPro:IPR019080 Pfam:PF09588 InterPro:IPR017482
            TIGRFAMs:TIGR03033 EMBL:BT005686 EMBL:AK118996 IPI:IPI00522372
            RefSeq:NP_176934.2 UniGene:At.35616 ProteinModelPortal:Q8GW93
            SMR:Q8GW93 STRING:Q8GW93 PaxDb:Q8GW93 PRIDE:Q8GW93
            EnsemblPlants:AT1G67660.1 GeneID:843091 KEGG:ath:AT1G67660
            TAIR:At1g67660 eggNOG:NOG265035 HOGENOM:HOG000240872
            InParanoid:Q8GW93 OMA:EIMDREW PhylomeDB:Q8GW93
            ProtClustDB:CLSN2680586 ArrayExpress:Q8GW93 Genevestigator:Q8GW93
            Uniprot:Q8GW93
        Length = 355

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 165/280 (58%), Positives = 209/280 (74%)

Query:    32 RNFSTWSASLISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTAL 91
             + FS+ + SLI+   S    P SS+ V + ++ +D+ Q+S+EWFALR+DKLTTSTFSTAL
Sbjct:    79 KRFSSTALSLITQTISPFAHPRSSVIVSSLLSPSDIPQKSEEWFALRKDKLTTSTFSTAL 138

Query:    92 GFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFA 151
             GFWKG RR+ELWHEKV+  + +V+E S R AM WGV  E++AI+RYK I G +V ++GFA
Sbjct:   139 GFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMESSAIERYKRIMGCEVGTMGFA 198

Query:   152 VHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQME 211
             +H+ E+  WLGASPDG+L CF   GILEVKCPYNKGK E  LPW  VP+YYMPQ+QGQME
Sbjct:   199 IHSNEEFHWLGASPDGILDCF---GILEVKCPYNKGKTETVLPWKKVPYYYMPQLQGQME 255

Query:   212 ILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKEALSMGRE-ELA 270
             I+DREWV+LYCWT NGST+FRV+R R YW +IH +L+EFWWE+V+PA+EAL +G+E E  
Sbjct:   256 IMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHDVLREFWWESVIPAREALLLGKEDEEV 315

Query:   271 TSYDPTSTHRLTGLAIVXXXXXXXXXXXXXXEIAGHVEFF 310
               Y+PTSTH+ T LAI               EIA HVEFF
Sbjct:   316 KKYEPTSTHKRTKLAIAKSLNLAAESKLVCREIADHVEFF 355


>TAIR|locus:2014874 [details] [associations]
            symbol:AT1G13810 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
            activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR011604 EMBL:CP002684 GO:GO:0003677
            GO:GO:0090305 Gene3D:3.90.320.10 InterPro:IPR011335 SUPFAM:SSF52980
            GO:GO:0004519 InterPro:IPR019080 Pfam:PF09588 EMBL:AY735513
            IPI:IPI00516737 RefSeq:NP_172836.1 UniGene:At.50929
            ProteinModelPortal:Q5XVK9 SMR:Q5XVK9 PaxDb:Q5XVK9 PRIDE:Q5XVK9
            EnsemblPlants:AT1G13810.1 GeneID:837942 KEGG:ath:AT1G13810
            TAIR:At1g13810 eggNOG:NOG149697 InParanoid:Q5XVK9 OMA:YIVYESK
            PhylomeDB:Q5XVK9 ProtClustDB:CLSN2913641 Genevestigator:Q5XVK9
            Uniprot:Q5XVK9
        Length = 303

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 87/226 (38%), Positives = 130/226 (57%)

Query:    42 ISPVASLVVRPPSSLAVVACVTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSE 101
             IS +  +V +     AVV  VT+     R + W  LR+++LT S F+ A+GF    RR+ 
Sbjct:    35 ISEIVGIVSKKEE--AVV--VTEPTHHWRKN-WEDLRKNRLTASNFARAIGFSPDGRRN- 88

Query:   102 LWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQL--- 158
             LW EK+ + +        R    W + NE  A++RY  +TG+++    F V+   +    
Sbjct:    89 LWLEKIGAAKPFA---GNRATF-WDIENEVEALERYNELTGNEILIPEFVVYKNGESPEE 144

Query:   159 DWLGASPDGLLGCFPGG----GILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILD 214
             +WLGASPDG++     G    G+LEVKCP++        PW  VP+  +PQ+QG MEI+D
Sbjct:   145 NWLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPYNCVPQLQGLMEIVD 204

Query:   215 REWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWWENVVPAKE 260
              +W+DLYCWT NGS++FRV R   +WE +   L +FW  +V+PA+E
Sbjct:   205 TDWLDLYCWTRNGSSLFRVWRDTAFWEDMKPALFDFWQNHVLPARE 250


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       297   0.00093  115 3  11 22  0.37    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  255 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.25u 0.09s 22.34t   Elapsed:  00:00:01
  Total cpu time:  22.25u 0.09s 22.34t   Elapsed:  00:00:01
  Start:  Fri May 10 00:41:50 2013   End:  Fri May 10 00:41:51 2013

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