Query 021549
Match_columns 311
No_of_seqs 197 out of 795
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sm4_A Exonuclease; homologous 100.0 3.3E-48 1.1E-52 351.9 13.7 184 62-255 15-213 (229)
2 3syy_A Exonuclease; digest dou 100.0 2.9E-47 9.8E-52 342.9 11.8 180 67-256 1-192 (216)
3 3k93_A Phage related exonuclea 100.0 2E-29 7E-34 226.0 12.1 164 76-251 4-212 (223)
4 2w45_A Nuclease, alkaline exon 99.8 1.6E-19 5.4E-24 177.0 3.3 112 65-187 110-233 (470)
5 3fhd_A ORF 37; enase like PD-( 99.6 7.5E-17 2.6E-21 158.1 5.1 111 66-186 149-273 (508)
6 4ic1_A Uncharacterized protein 94.0 0.68 2.3E-05 40.1 11.9 146 99-263 37-188 (206)
7 2wcw_A HJC; type II restrictio 36.8 57 0.0019 26.3 5.4 55 124-185 6-60 (139)
8 1ob8_A Holliday-junction resol 24.7 53 0.0018 26.5 3.2 55 124-185 4-58 (135)
9 2vxz_A Pyrsv_GP04; viral prote 23.1 84 0.0029 26.1 4.1 47 204-252 39-85 (165)
10 2eo0_A Hypothetical protein ST 21.8 59 0.002 26.5 3.0 51 124-185 9-64 (147)
11 2lug_A Myelin basic protein; i 20.4 68 0.0023 19.6 2.2 20 248-267 13-32 (36)
12 3h4r_A Exodeoxyribonuclease 8; 20.1 74 0.0025 28.3 3.5 75 160-242 141-226 (265)
No 1
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=100.00 E-value=3.3e-48 Score=351.94 Aligned_cols=184 Identities=21% Similarity=0.292 Sum_probs=162.9
Q ss_pred cccccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCCh---------HHHHHHHHcCccccccccchhHHHHHHHHhHHH
Q 021549 62 VTQNDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRR---------SELWHEKVFSLETQVIENSKRCAMEWGVLNEAA 132 (311)
Q Consensus 62 ~~~~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~---------~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~ 132 (311)
|++.+++|+|+||+++|+++||||+++++||.++++++ .+||+||++|...+ .+|++|+||+.+||.
T Consensus 15 ~~i~~~~Q~s~eWl~~R~~~ItaS~~~~ilg~~~~~sp~~~~~~~y~~~L~~ek~~g~~~~----~~~~a~~~G~~~Ep~ 90 (229)
T 3sm4_A 15 IDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPE----VNAKALAWGKQYEND 90 (229)
T ss_dssp CCTTCCCSSSHHHHHHTTTCEEGGGTHHHHCCCSSSSCCCHHHHHHHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCHHHHHHHCCCccHhHHHHHHCCCCCCCccchhhHHHHHHHHHHHhcCCCCC----CChHHHHHHHHhHHH
Confidence 78899999999999999999999999999999999988 69999998877543 368999999999999
Q ss_pred HHHHHHhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCC--CCCCCcccHHHHHHHh
Q 021549 133 AIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALP--WSTVPFYYMPQVQGQM 210 (311)
Q Consensus 133 a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~--~~~iP~~Y~~QVQ~qM 210 (311)
|++.|++.+|.+|.++|+++++ ++|||+|||||++.+ .++||||||+...++..... .+++|.+|++|||+||
T Consensus 91 ar~~y~~~tg~~V~~~g~~~~~--~~p~l~ASpDGlv~~---~~ilEiKcp~~~~~~~~~~~~g~~~ip~~Y~~QvQ~qm 165 (229)
T 3sm4_A 91 ARTLFEFTSGVNVTESPIIYRD--ESMRTACSPDGLCSD---GNGLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQYSM 165 (229)
T ss_dssp HHHHHHHHHSCCEECCCCEESS--TTCCEEECCSEEETT---SCEEEEECCSSHHHHHHHHHHGGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeeEECCeEEeC--CCCceeecCceecCC---CcEEEEecCCcchhhHHHHhcCcccCCHHHHHHHHHHH
Confidence 9999999999999999998876 489999999999954 48999999987532211111 1369999999999999
Q ss_pred HhhcCCcEEEEEEcCC----CeEEEEEECCHHHHHHHHHHHHHHHHHhc
Q 021549 211 EILDREWVDLYCWTPN----GSTIFRVIRRRDYWELIHGILQEFWWENV 255 (311)
Q Consensus 211 ~Vtg~~~~~fvv~~~~----~~~v~rV~RD~~~~~~i~~~~~~Fw~~~V 255 (311)
+|+|+++|||++|+++ ++++++|+||+++++.|++++.+||. .|
T Consensus 166 ~vtg~~~~~f~~~~~~~~~~~~~i~rI~RD~~~i~~l~~~~~~Fw~-~v 213 (229)
T 3sm4_A 166 WVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE-KM 213 (229)
T ss_dssp HHHTCSEEEEEEECTTSSSCCEEEEEEECCHHHHHHHHHHHHHHHH-HH
T ss_pred HhcCCCEEEEEEEeCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH-HH
Confidence 9999999999999985 58999999999999999999999994 44
No 2
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=100.00 E-value=2.9e-47 Score=342.87 Aligned_cols=180 Identities=29% Similarity=0.434 Sum_probs=149.7
Q ss_pred CCCCCHHHHHHhhCCCccchHHHhh-----CCCCCCC--hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHh
Q 021549 67 MLQRSDEWFALRRDKLTTSTFSTAL-----GFWKGKR--RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKS 139 (311)
Q Consensus 67 ~~q~s~eW~~~R~~rITAS~~a~il-----g~~~~~s--~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~ 139 (311)
++|||+||+++|+++||||+++++| |++++++ +.+||.||++|...+ +.+|++|+||+.+||.|++.|++
T Consensus 1 ~~Q~s~eW~~~R~~~ItaS~~~~i~~~~~~G~~~~~~~~~~~L~~ek~tG~~~~---~~~~~a~~~G~~lE~~a~~~~~~ 77 (216)
T 3syy_A 1 MEQRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEI---RFSNAAMQRGTELEPHARARYII 77 (216)
T ss_dssp ----CCHHHHHHTTCEEGGGHHHHHCC-----CHHHHHHHHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHhcccCCCCchhhhHHHHHHHHHHcCCCCC---ccccHHHHHhHHhHHHHHHHHHH
Confidence 5899999999999999999999999 7777654 359999998676543 24799999999999999999999
Q ss_pred HhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEE
Q 021549 140 ITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVD 219 (311)
Q Consensus 140 ~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~ 219 (311)
.+|..|.++|++.++ .+|||+|||||++.++ ++||||||+....+.. ...+++|.+|++|||+||+|||+++||
T Consensus 78 ~~g~~v~~~g~~~~~--~~~~l~ASpDG~v~~~---~ilEiK~p~~~~~~~~-~~~~~ip~~Y~~QvQ~qm~Vtg~~~~~ 151 (216)
T 3syy_A 78 ETGEIVTEVGLIDHP--TIAGFGASPDGLVGDT---GLIEIKCPNTWTHIET-IKTGKPKPEYIKQMQTQMACTGRQWCD 151 (216)
T ss_dssp HHCCCEECCCCEECS--SSTTEEECCSEEETTT---EEEEEECCCHHHHHHH-HHHCSCCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHCCEeEEcceEECC--CCccceeCCCEeecCC---ceEEEecCCccchHHH-HhCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 999999999997775 5899999999999764 8999999986543211 113689999999999999999999999
Q ss_pred EEEEcCC-----CeEEEEEECCHHHHHHHHHHHHHHHHHhcC
Q 021549 220 LYCWTPN-----GSTIFRVIRRRDYWELIHGILQEFWWENVV 256 (311)
Q Consensus 220 fvv~~~~-----~~~v~rV~RD~~~~~~i~~~~~~Fw~~~V~ 256 (311)
|+||+++ .+.+++|+||+++|+.|++++.+|| +.|.
T Consensus 152 f~v~~~~~~~~~~~~~~rI~RD~~~i~~l~~~~~~Fw-~~v~ 192 (216)
T 3syy_A 152 FVSYDDRLPDDMQYFCTRIERDDALIAEIETEVSAFL-AELE 192 (216)
T ss_dssp EEEECTTSCGGGSEEEEEEECCHHHHHHHHHHHHHHH-HHHH
T ss_pred EEEecCCCCCCCceEEEEEECCHHHHHHHHHHHHHHH-HHHH
Confidence 9999973 6889999999999999999999999 4543
No 3
>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT}
Probab=99.96 E-value=2e-29 Score=225.96 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=129.8
Q ss_pred HHhhCCCccchHHHhhCCCCC------C--C------hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHh
Q 021549 76 ALRRDKLTTSTFSTALGFWKG------K--R------RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSIT 141 (311)
Q Consensus 76 ~~R~~rITAS~~a~ilg~~~~------~--s------~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~ 141 (311)
.+|.-+||||.++.+|+..+. . + ..+|..|+++|..+ +.+|++|+||+.+||.||++|+..+
T Consensus 4 ~~~~~~iTaS~~~~v~~~~k~~~~~~~g~~s~~a~~Y~~eLi~E~ltG~~~----~~~n~~m~~G~~lEp~Ar~~y~~~~ 79 (223)
T 3k93_A 4 NLYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYNA----FEGNKYTQKGNELEEQAIKLSGVTR 79 (223)
T ss_dssp GGCCCCEEGGGHHHHHCCCSSHHHHHTTCCCHHHHHHHHHHHHHHHHCCCS----CCCCHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccceeeeEechHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHhCCCc----ccCCHHHHhhHhhhHHHHHHHHHHH
Confidence 356678999999999987663 1 1 47899999998742 3589999999999999999999999
Q ss_pred CCeeee-ccceeeccccccccccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCCCcc----cHHHHHHHhHhhcCC
Q 021549 142 GHDVSS-LGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTVPFY----YMPQVQGQMEILDRE 216 (311)
Q Consensus 142 g~~V~~-~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~iP~~----Y~~QVQ~qM~Vtg~~ 216 (311)
|..+.+ +|+.. .+++||||||++.++ .++||||||++..+.... ..+.++.. |++|||+||+++|++
T Consensus 80 ~~~~~~~~~~~~-----~d~~g~SpDGl~~~~--~gllEIKCp~s~~t~~~~-~~e~~~k~~~~~Y~~QmQ~~M~l~g~~ 151 (223)
T 3k93_A 80 GLALKKNTERRE-----NEFITGECDIYVPSR--KLIIDTKCSWDIGSHPFF-TDEAQEKAKKAGYDIQMQGYMWLWDCD 151 (223)
T ss_dssp TCCCCCCCCCEE-----CSSEEECCSEEEGGG--TEEEEEEECSSTTTSCCS-HHHHHHHHHHHTHHHHHHHHHHHHTCS
T ss_pred CCccccccceec-----cCCeeecCccccCCC--CCeEEEeCCCCccccchh-hhcCccccccccHHHHHHhhhhhcCCC
Confidence 998874 66543 358999999999752 499999999986542211 01223433 999999999999999
Q ss_pred c--EEEEEEc-C-----------------------CCeEEEEEECCHHHHHHHHHHHHHHH
Q 021549 217 W--VDLYCWT-P-----------------------NGSTIFRVIRRRDYWELIHGILQEFW 251 (311)
Q Consensus 217 ~--~~fvv~~-~-----------------------~~~~v~rV~RD~~~~~~i~~~~~~Fw 251 (311)
| |||+.+. | ..+.+++|+||++++++|.+++..|-
T Consensus 152 ~a~~df~l~~~P~~~~~~yd~~~~~~~~v~~i~~~~ri~~~~V~RDe~~I~~i~~~v~~~~ 212 (223)
T 3k93_A 152 QAQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQ 212 (223)
T ss_dssp EEEEEEECCCCCGGGCCTTSCHHHHTHHHHTSCGGGGEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred ceeeeEEEecChhhhccccCchhhhhhhhhccChhhceEEEEEecCHHHHHHHHHHHHHHH
Confidence 9 6666655 2 24789999999999999999998875
No 4
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=99.76 E-value=1.6e-19 Score=176.96 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=83.3
Q ss_pred ccCCCCCHHHHHHhhCCCccchHHHhhCCCCCCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHh---Hh
Q 021549 65 NDMLQRSDEWFALRRDKLTTSTFSTALGFWKGKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKS---IT 141 (311)
Q Consensus 65 ~~~~q~s~eW~~~R~~rITAS~~a~ilg~~~~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~---~~ 141 (311)
+.-||+|++|+.+|.++||||.++.++..++.+. +..|. +. . +...+++|+||+++|+.|++.|+. .+
T Consensus 110 TRgQs~n~lW~~LR~GrITAS~~~~v~~~~~~k~-~~~~~----~~-~---~~~~s~Am~fG~~~E~~Ar~l~e~~~~~~ 180 (470)
T 2w45_A 110 TRGQSENLMWDILRNGIISSSKLLSTIKNGPTKV-FEPAP----IS-T---NHYFGGPVAFGLRCEDTVKDIVCKLICGD 180 (470)
T ss_dssp HSSCTTSHHHHHHHTTCEESTTHHHHHHHCSGGG-GSCC---------------CCSHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhccCCCHHHHHHHCCCccccccchhhcCCCcce-eeecc----cc-c---cccCcHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 4468899999999999999999998876221110 11011 10 1 113578999999999999999988 56
Q ss_pred CCeeeeccceeeccccccccccCCCcccc--cCCCCc-------EEEEecCCCCC
Q 021549 142 GHDVSSLGFAVHAEEQLDWLGASPDGLLG--CFPGGG-------ILEVKCPYNKG 187 (311)
Q Consensus 142 g~~V~~~Gl~i~~~~~~p~lgASPDGli~--~~~~~~-------iLEIKcP~~~~ 187 (311)
+..|.+|||++++ ..+++||||||++. .+++.+ ++||||||++.
T Consensus 181 ~~~V~~cGL~isp--~~g~~GASPDglv~~~~~d~~~~~~p~~~vlEIKCP~kY~ 233 (470)
T 2w45_A 181 ASANRQFGFMISP--TDGIFGVSLDLCVNVESQGDFILFTDRSCIYEIKCRFKYL 233 (470)
T ss_dssp CCEECCCCCEECT--TTSSEEECCSEEEEEEEETTEEEEEEEEEEEEEEECGGGC
T ss_pred CCeeeccceEEeC--CCCcEEECCCeeeeeeccCCcccccCCccEEEEcCCcccc
Confidence 8899999999986 47999999999994 222333 89999998753
No 5
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A*
Probab=99.64 E-value=7.5e-17 Score=158.06 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=73.5
Q ss_pred cCCCCCHHHHHHhhCCCccchHHHhhCCCC-CCChHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHh---
Q 021549 66 DMLQRSDEWFALRRDKLTTSTFSTALGFWK-GKRRSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSIT--- 141 (311)
Q Consensus 66 ~~~q~s~eW~~~R~~rITAS~~a~ilg~~~-~~s~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~--- 141 (311)
.-|+++++|+.+|.++||||.+..++.... .....+-| +... ....++||.||+++|+.|++.+++..
T Consensus 149 RGQS~N~LW~~LR~GrITAS~~~~v~~k~~s~~~~f~~~-----~~~~---~~~~s~AM~fG~~~E~~AK~li~~~i~~~ 220 (508)
T 3fhd_A 149 SSQSLNPVWDALRDGIISSSKFHWAVKQQNTSKKIFSPW-----PITN---NHFVAGPLAFGLRCEEVVKTLLATLLHPD 220 (508)
T ss_dssp TTGGGSTTHHHHHTTSEEGGGHHHHHHTCSTTSCSCC------------------------CHHHHHHHHHHHHHHTCTT
T ss_pred hcCccCHHHHHHHcCCeeeccceehhhcccCCCCccccC-----Cccc---cccCCHHHHHhHhhHHHHHHHHHHHhhcC
Confidence 356799999999999999999999874211 01000001 1111 11357999999999999999777654
Q ss_pred CCeeeeccceeeccccccccccCCCcccccC---CC-------CcEEEEecCCCC
Q 021549 142 GHDVSSLGFAVHAEEQLDWLGASPDGLLGCF---PG-------GGILEVKCPYNK 186 (311)
Q Consensus 142 g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~---~~-------~~iLEIKcP~~~ 186 (311)
+..|.+|||++++ ..+++||||||++.++ .| ..|+||||||++
T Consensus 221 ~~~V~dCGL~Isp--~~Gl~GASPD~l~~~~~~~~G~l~~~~~~~vyEIKCR~KY 273 (508)
T 3fhd_A 221 ETNCLDYGFMQSP--QNGIFGVSLDFAANVKTDTEGRLQFDPNCKVYEIKCRFKY 273 (508)
T ss_dssp SCEECCCCCEECT--TTSSEEECCSEEEEEEECSSSCEEEEEEEEEEEEEECGGG
T ss_pred CCeeeeeeeeEeC--CCCcceEcCCeEEeeecCCCCceeecCCceEEEEecCccc
Confidence 5789999999986 4799999999999743 12 458999999875
No 6
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=93.99 E-value=0.68 Score=40.09 Aligned_cols=146 Identities=10% Similarity=-0.018 Sum_probs=84.8
Q ss_pred hHHHHHHHHcCccccccccchhHHHHHHHHhHHHHHHHHHhHhCC--eee-eccceeeccccccccccCCCcccccC-CC
Q 021549 99 RSELWHEKVFSLETQVIENSKRCAMEWGVLNEAAAIDRYKSITGH--DVS-SLGFAVHAEEQLDWLGASPDGLLGCF-PG 174 (311)
Q Consensus 99 ~~~L~~eK~~g~~~~~~~~~~n~am~~G~~~E~~a~~~ye~~~g~--~V~-~~Gl~i~~~~~~p~lgASPDGli~~~-~~ 174 (311)
+..+|.+...+.... ....|..|.-|+..-+.+.+.+....|. +|. ...+.+... ---+.+-.|++...+ +.
T Consensus 37 pR~~~l~~~~~~~~~--~E~~~~~~~~G~~~H~~~~~~~~~~~~v~~Ev~i~~~~~v~~~--~~~l~GriD~i~~~~~g~ 112 (206)
T 4ic1_A 37 PRRVRYESEYKELAI--SQVYAPSAILGDILHLGLESVLKGNFNAETEVETLREINVGGK--VYKIKGRADAIIRNDNGK 112 (206)
T ss_dssp HHHHHHHHHCHHHHG--GGGGCHHHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEETTE--EEEEEEEEEEEEC----C
T ss_pred CCHHHHHHHcccccc--ccccChHHHHHHHHHHHHHHHHHhccCccceEEEEEEEEeCCe--EEEEEEEEEEEEEcCCCC
Confidence 567888876322110 0124789999999988888888766542 111 111222111 113667899988753 45
Q ss_pred CcEEEEecCCCCCCCcccCCCCCCCcccHHHHHHHhHhhcCCcEEEEEEcCCCeEEEEE--ECCHHHHHHHHHHHHHHHH
Q 021549 175 GGILEVKCPYNKGKPEIALPWSTVPFYYMPQVQGQMEILDREWVDLYCWTPNGSTIFRV--IRRRDYWELIHGILQEFWW 252 (311)
Q Consensus 175 ~~iLEIKcP~~~~~~~~~~~~~~iP~~Y~~QVQ~qM~Vtg~~~~~fvv~~~~~~~v~rV--~RD~~~~~~i~~~~~~Fw~ 252 (311)
..++|+|+.....+ .....|..|+..|+++.+.+.+.++....+....+.+ +.|++.+.. .+.
T Consensus 113 ~~ive~Ktg~~~~~--------~~~~~~~~Ql~~Y~~~l~~~~G~L~Y~~~~~~~~v~~~~~l~~~~~~~---~i~---- 177 (206)
T 4ic1_A 113 SIVIEIKTSRSDKG--------LPLIHHKMQLQIYLWLFSAEKGILVYITPDRIAEYEINEPLDEATIVR---LAE---- 177 (206)
T ss_dssp CEEEEEECCSCCTT--------SSCHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCCCCHHHHHH---HHH----
T ss_pred EEEEEEecCCCCcc--------cccHHHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEeCCcCCHHHHHH---HHH----
Confidence 67999999532211 1234577999999999999887766555555555555 355554432 233
Q ss_pred HhcCCCCCCCC
Q 021549 253 ENVVPAKEALS 263 (311)
Q Consensus 253 ~~V~p~~~p~~ 263 (311)
+.+....+|++
T Consensus 178 ~~~~~~~~P~~ 188 (206)
T 4ic1_A 178 DTIMLQNSPRF 188 (206)
T ss_dssp HHHTTCSSSSS
T ss_pred HHHhcCCCcCC
Confidence 33445556655
No 7
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=36.78 E-value=57 Score=26.35 Aligned_cols=55 Identities=18% Similarity=-0.023 Sum_probs=36.4
Q ss_pred HHHHHhHHHHHHHHHhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCC
Q 021549 124 EWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYN 185 (311)
Q Consensus 124 ~~G~~~E~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~ 185 (311)
..|..-|..|.+.+.+. |..|.... .. . -.-.+-||-+...++....+|+|+..+
T Consensus 6 ~~G~~~E~~a~~~L~~~-Gy~ilR~~---~s--g-~~~~~eiDIIA~~~~~lv~IEVKtr~~ 60 (139)
T 2wcw_A 6 SKGTRFERDLLVELWKA-GFAAIRVA---GA--G-VSPFPCPDIVAGNGRTYLAIEVKMRKE 60 (139)
T ss_dssp -CHHHHHHHHHHHHHHT-TCEEEEBT---TS--S-SCSSCCCSEEEECSSCEEEEEEEECSS
T ss_pred hhHHHHHHHHHHHHHhC-CcEEEEec---CC--C-CCCCCCCCEEEeECCEEEEEEEEECCC
Confidence 36888999999988775 76665321 01 1 123468888876655567889999754
No 8
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A
Probab=24.68 E-value=53 Score=26.47 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHHHHhHhCCeeeeccceeeccccccccccCCCcccccCCCCcEEEEecCCC
Q 021549 124 EWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLGASPDGLLGCFPGGGILEVKCPYN 185 (311)
Q Consensus 124 ~~G~~~E~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lgASPDGli~~~~~~~iLEIKcP~~ 185 (311)
.-|..-|..|.+.+++. |..|..+...- -.-.+-||-+..+++....+|+|+..+
T Consensus 4 ~~G~~~E~~A~~~L~~~-G~~ilr~~~~g------~~~~gEiDIIA~~g~~lVfVEVKtR~~ 58 (135)
T 1ob8_A 4 DIGKNAERELVSILRGE-GFNAVRIPTSN------SSPNPLPDIFATKGNTLLSIECKSTWE 58 (135)
T ss_dssp --CHHHHHHHHHHHHHT-TCEEEECCC-----------CCSCSEEEEETTEEEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHC-CCEEEEEcccC------CCCCCCceEEEeECCEEEEEEEEEcCC
Confidence 45888899998888776 77766432100 013457787776654566789999654
No 9
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=23.06 E-value=84 Score=26.07 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=36.9
Q ss_pred HHHHHHhHhhcCCcEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHHHH
Q 021549 204 PQVQGQMEILDREWVDLYCWTPNGSTIFRVIRRRDYWELIHGILQEFWW 252 (311)
Q Consensus 204 ~QVQ~qM~Vtg~~~~~fvv~~~~~~~v~rV~RD~~~~~~i~~~~~~Fw~ 252 (311)
-|+|+.+++..++.+.+-+-.++ ..+..+ -+.++...+-+.+++||.
T Consensus 39 g~aq~~Ly~LeREG~V~~Vk~GK-~ayw~L-~~s~y~~kV~dilrel~~ 85 (165)
T 2vxz_A 39 GRAKALIYVLEKEGRVTRVAFGN-VALVCL-SMDQYRQLVDGMIREVER 85 (165)
T ss_dssp HHHHHHHHHHHHTTSCEEEEETT-EEEEES-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEEEcc-EEEEEe-cHHHHHHHHHHHHHHHHH
Confidence 69999999999999888776665 334444 356888889999999994
No 10
>2eo0_A Hypothetical protein ST1444; holliday junction resolvase, DNA binding protein, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=21.83 E-value=59 Score=26.49 Aligned_cols=51 Identities=24% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHhHHHHHHHHHhHhCCeeeeccceeeccccccccc-----cCCCcccccCCCCcEEEEecCCC
Q 021549 124 EWGVLNEAAAIDRYKSITGHDVSSLGFAVHAEEQLDWLG-----ASPDGLLGCFPGGGILEVKCPYN 185 (311)
Q Consensus 124 ~~G~~~E~~a~~~ye~~~g~~V~~~Gl~i~~~~~~p~lg-----ASPDGli~~~~~~~iLEIKcP~~ 185 (311)
+-|...|..|.+.+++. |..|..+ +..+ +-||-+...++....+|||+..+
T Consensus 9 ~~G~~~E~~a~~~L~~~-G~~ilr~----------~~sgg~~~~gEiDIIA~~~~~lvfVEVK~R~~ 64 (147)
T 2eo0_A 9 SRGSSVERYIVSRLRDK-GFAVIRA----------PASGSKRKDHVPDIIALKSGVIILIEVKSRKN 64 (147)
T ss_dssp ---CHHHHHHHHHHHHT-TCEEECC---------------CCGGGSCSEEEEETTEEEEEEEEECCC
T ss_pred HhHHHHHHHHHHHHHHC-CCEEEEE----------cccCCcCCCCCceEEEEeCCEEEEEEEEECCC
Confidence 47888999999888775 6665532 2222 36887776655567899999754
No 11
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=20.44 E-value=68 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCCCCCCCCch
Q 021549 248 QEFWWENVVPAKEALSMGRE 267 (311)
Q Consensus 248 ~~Fw~~~V~p~~~p~~~~~~ 267 (311)
-.||++.|-|..||+..++.
T Consensus 13 vhffknivsprtppp~q~kg 32 (36)
T 2lug_A 13 VHFFKNIVTPRTPPPSQGKG 32 (36)
T ss_dssp HHHHHHHHCSSCCCCCBCTT
T ss_pred hHhhhhccCCCCCCCccccc
Confidence 46998999999999886653
No 12
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli}
Probab=20.08 E-value=74 Score=28.32 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=44.0
Q ss_pred ccccCCCcccccCCCCcEEEEecCCCCCCCcccCCCCCC-CcccHHHHHHHhHhh----cCCcEEEEEE-cC-C----Ce
Q 021549 160 WLGASPDGLLGCFPGGGILEVKCPYNKGKPEIALPWSTV-PFYYMPQVQGQMEIL----DREWVDLYCW-TP-N----GS 228 (311)
Q Consensus 160 ~lgASPDGli~~~~~~~iLEIKcP~~~~~~~~~~~~~~i-P~~Y~~QVQ~qM~Vt----g~~~~~fvv~-~~-~----~~ 228 (311)
.+.+-||.+..+ ...|+.+||.-+...+. ..+ ++.|..|+-+|+.+. |... .|+.+ .. . -+
T Consensus 141 ~~kgriD~l~~~--~~~ivD~KT~~~~~~~~-----~~i~~~~Y~~Q~A~Y~~~l~~~~G~~~-~f~~lav~k~~~~~p~ 212 (265)
T 3h4r_A 141 LCRCRPDKIIPE--FHWIMDVKTTADIQRFK-----TAYYDYRYHVQDAFYSDGYEAQFGVQP-TFVFLVASTTIECGRY 212 (265)
T ss_dssp EEEECCSEEEGG--GTEEEEEEEESCHHHHH-----HHHHHHTTTHHHHHHHHHHHHHHSSCC-EEEEEEEESSCBTTBC
T ss_pred eEEEEEEEEECC--CcEEEEeCCCCCHHHHH-----hhhccCCHHHHHHHHHHHHHHHhCCCC-cEEEEEEECcccCCCC
Confidence 467777877633 24689999953221111 123 678989999988766 5443 34333 22 1 23
Q ss_pred EEEEEECCHHHHHH
Q 021549 229 TIFRVIRRRDYWEL 242 (311)
Q Consensus 229 ~v~rV~RD~~~~~~ 242 (311)
.+..+..|++.++.
T Consensus 213 ~v~v~~~~~~~l~~ 226 (265)
T 3h4r_A 213 PVEIFMMGEEAKLA 226 (265)
T ss_dssp CEEEEECCHHHHHH
T ss_pred ceEEEcCCHHHHHH
Confidence 45666778876644
Done!