BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021550
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 120/295 (40%), Gaps = 49/295 (16%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
I+EGD V++ + + V + F G K + IG+ FG + S+KG +L
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGH 135
P + + QI++ D + ++ Y + PG + A V P G
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V +++ E A A E+ + G VT+ ++DI +G +E D + LDLPQP
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI----RTFEILLRTYEIRQWRAD 251
+ A K LK G +++PC QV R E LR F D RT +L+ E+++ +
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR-EFKDYFMKPRTINVLVFDQEVKK---E 232
Query: 252 CXXXXXXXXXXSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
C RP A HTGY+TFAR
Sbjct: 233 CM------------------------------------RPRTTALVHTGYITFAR 251
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 120/295 (40%), Gaps = 49/295 (16%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
I+EGD V++ + + V + F G K + IG+ FG + S+KG +L
Sbjct: 2 IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGH 135
P + + QI++ D + ++ Y + PG + A V P G
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V +++ E A A E+ + G VT+ ++DI +G +E D + LDLPQP
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPERV 176
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI----RTFEILLRTYEIRQWRAD 251
+ A K LK G +++PC QV R E LR F D RT +L+ E+++ +
Sbjct: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR-EFKDYFMKPRTINVLVFDQEVKK---E 232
Query: 252 CXXXXXXXXXXSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
C RP A HTGY+TFAR
Sbjct: 233 CM------------------------------------RPRTTALVHTGYITFAR 251
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 5/230 (2%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLA 75
+K GD V++ + V + ++ G ++ K G ++ ++ G Y+L
Sbjct: 20 LKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILI 79
Query: 76 PTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGH 135
P+ + + RTQI+Y D SF+ M L++ G + ARAV +G
Sbjct: 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK 139
Query: 136 VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLA 195
V+ ++ E+ A A + + G+ VT+ VRDI +GF ++ D++FLD+P PW
Sbjct: 140 VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS-EGFDEKD---VDALFLDVPDPWNY 195
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTYE 244
I + LK G + P QVQ + + L+ L F I +E L R Y+
Sbjct: 196 IDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYK 245
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 17/221 (7%)
Query: 34 VKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY 93
+ + + F G+ H IG GS+V S+ G +L P + + + Q++Y
Sbjct: 25 MSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIY 84
Query: 94 IADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDF 153
D + ++ ++ PG V RAV P G V ++ EQRA A +
Sbjct: 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHA--EH 139
Query: 154 ERTGVSSFVT-------VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD 206
R VS + V D+ PD G D LD+ PW + + ++L
Sbjct: 140 ARRNVSGCYGQPPDNWRLVVSDLADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAG 196
Query: 207 GILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEI 245
G+L + + Q+ R E+LR +T+ R +E L R + +
Sbjct: 197 GVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNV 237
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 85/212 (40%), Gaps = 8/212 (3%)
Query: 38 QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
+ F + G+ H + G +V ++ G + + PT E + L + Y D
Sbjct: 26 EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 85
Query: 98 SFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S ++ L+L PG V ARAV G V +++ A A +
Sbjct: 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN----- 140
Query: 158 VSSFVTV-GVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215
V +F V VR G+ E A D + LDL +PW + A LK D L ++ P
Sbjct: 141 VRAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPN 200
Query: 216 IEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
I QV + + F R E+ R +E+R
Sbjct: 201 ITQVLELVRAAEAHPFRLERVLEVGWREWEVR 232
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 13/231 (5%)
Query: 15 CIKEGDLVIVYERHDCMKAV-KVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYL 73
KEG+ V++ R K + K+ + + K + IGKP G + GF
Sbjct: 3 SFKEGEYVLI--RFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKI----NGFEVY 56
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPT 133
E+ L +TQI+Y D ++ + L L V +
Sbjct: 57 RPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---A 113
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V+TF+ E+ +A+++ ++ + V D + P+ G+ + F+D+ +PW
Sbjct: 114 GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE---GIFHAAFVDVREPW 170
Query: 194 LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYE 244
+ K L + + P QV + ES+ F ++ EIL R Y+
Sbjct: 171 HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVVEILHRHYK 221
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 23/221 (10%)
Query: 44 NRFGAFKHSDWIGKPFGSMVFSNKG-------GFVYLLA-PTPELWTLVLSHRTQILYIA 95
N FG +S+W PFG +V G G Y+L P E + +++ T I +
Sbjct: 34 NNFGLL-NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPK 92
Query: 96 DISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTF-------DFHEQRAAS 148
DI+ ++ +++ PG V ++AV G V +F D ++
Sbjct: 93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
Query: 149 AREDFERTGVSSF---VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQ 205
R+ ++ + V + V +DI G D S D++ LD+ P + +P LK
Sbjct: 153 WRDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 211
Query: 206 DGILCSFSPCIEQVQRSCESLR---LNFTDIRTFEILLRTY 243
G+ + I QV + +R L + + E+++R +
Sbjct: 212 GGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDW 252
>pdb|1YB2|A Chain A, Structure Of A Putative Methyltransferase From
Thermoplasma Acidophilum
Length = 275
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 7/173 (4%)
Query: 77 TPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHV 136
+P + V+ TQI+ D S++IM L PG + A+ G +
Sbjct: 79 SPXYFGRVIRRNTQIISEIDASYIIMRCGLRPGXDILEVGVGSGNXSSYILYALNGKGTL 138
Query: 137 YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLA 195
+ E A ++ S F +G D S D++ D+P PW
Sbjct: 139 TVVERDEDNLKKAXDNL-----SEFYDIGNVRTSRSDIADFISDQXYDAVIADIPDPWNH 193
Query: 196 IPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFT-DIRTFEILLRTYEIRQ 247
+ K + + P +Q +++ SL + + T E+ R +R+
Sbjct: 194 VQKIASXXKPGSVATFYLPNFDQSEKTVLSLSASGXHHLETVELXKRRILVRE 246
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 130 VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLA--DSIF 186
VAP V D EQR + ++ +R G+ + V QG G +P ++ G D I
Sbjct: 267 VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK------QGDGRYPSQWCGEQQFDRIL 320
Query: 187 LDLP 190
LD P
Sbjct: 321 LDAP 324
>pdb|3CSY|J Chain J, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|L Chain L, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|N Chain N, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
pdb|3CSY|P Chain P, Crystal Structure Of The Trimeric Prefusion Ebola Virus
Glycoprotein In Complex With A Neutralizing Antibody
From A Human Survivor
Length = 131
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 202 MLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRT---YEIRQWRADC 252
M QDG++C + ++ + T++RTF IL R + +++W C
Sbjct: 47 MHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTC 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,770,216
Number of Sequences: 62578
Number of extensions: 330436
Number of successful extensions: 901
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 15
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)