BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021550
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96FX7|TRM61_HUMAN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Homo sapiens GN=TRMT61A PE=1 SV=1
Length = 289
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 185/302 (61%), Gaps = 27/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAARGFSELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G GT G +G +P S P EA GHTGYLT
Sbjct: 242 TVSLPPPDLGTGTDG----------------PAGSDTSPFRS---GTPMKEAVGHTGYLT 282
Query: 304 FA 305
FA
Sbjct: 283 FA 284
>sp|Q6AY46|TRM61_RAT tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1
Length = 290
Score = 245 bits (626), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 186/302 (61%), Gaps = 26/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
++APTGH++T +FH+QRA ARE+F++ VS +VTV +D+ GF +AD++FLD
Sbjct: 124 SIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G G+ GS P S P E GHTGYLT
Sbjct: 242 TVSLPLPDLGADDLEGNVGS---------------DATPFRS---GTPMKETVGHTGYLT 283
Query: 304 FA 305
FA
Sbjct: 284 FA 285
>sp|Q80XC2|TRM61_MOUSE tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Mus musculus GN=Trmt61a PE=2 SV=1
Length = 290
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/302 (45%), Positives = 185/302 (61%), Gaps = 26/302 (8%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V ++G
Sbjct: 4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWT+ L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+VAPTGH++T +FH+QRA ARE+F+ +S +VTV +D+ GF +AD++FLD
Sbjct: 124 SVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L + FT++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAAHGFTELSTLEVLPQVYNVR 241
Query: 247 QWR---ADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLT 303
D G +L G +P S P E GHTGYLT
Sbjct: 242 TVSLPLPDLG---------------ANNLETNMGSDASPFRS---GTPMKETVGHTGYLT 283
Query: 304 FA 305
FA
Sbjct: 284 FA 285
>sp|A6H791|TRM61_BOVIN tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
OS=Bos taurus GN=TRMT61A PE=2 SV=1
Length = 285
Score = 238 bits (608), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 181/300 (60%), Gaps = 27/300 (9%)
Query: 10 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKG 68
+++ IKEGD I+ H M AV+V + + Q R G +HS D IG+PFGS V +G
Sbjct: 4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRG 63
Query: 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR 128
G+VY+L PTPELWTL L HRTQILY DI+ + M LEL PG +V ESGTGSGS++ ++ R
Sbjct: 64 GWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIR 123
Query: 129 AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188
+APTGH++T +FH+QRA ARE+F+ V +VTV +D+ GF S +AD++FLD
Sbjct: 124 TIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLD 181
Query: 189 LPQPWLAIPSAKKMLK-QDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246
+P PW A+ A LK + G CSFSPCIEQVQR+C++L F+++ T E+L + Y +R
Sbjct: 182 IPSPWEAVGHAWDALKVEGGRFCSFSPCIEQVQRTCQALAACGFSELSTLEVLPQVYNVR 241
Query: 247 QWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMA-RPNGEARGHTGYLTFA 305
+ G + P+ + + P E GHTGYLTFA
Sbjct: 242 TVSLP---------------------VPDLGARPGPDAAPFRSGTPMKETVGHTGYLTFA 280
>sp|Q86JJ0|TRM61_DICDI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a
OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1
Length = 312
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/303 (42%), Positives = 191/303 (63%), Gaps = 9/303 (2%)
Query: 13 TRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFV 71
+ IKEGD V++Y D M + + N+ + ++FG+++H + IGK +GS + S+ G GF
Sbjct: 5 NKIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFC 64
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
+++A TPELW++ L HRTQIL+ DIS +I LEL G +ESGTGSGSL++S+AR +A
Sbjct: 65 HVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIA 124
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGF-PDEFSGLADSIFLDL 189
P GH++TF+FHE+R AR+DF+ G+ ++TV RD G +GF + + D++FLDL
Sbjct: 125 PKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRDACGKEGFLRQDINNDIDAVFLDL 184
Query: 190 PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL-RLNFTDIRTFEILLRTYEIRQW 248
P PW AI +A ++ +LCSFSPCIEQVQ +C L F +I+T E+L+RT++ R
Sbjct: 185 PSPWDAIENAIAVMHDGSMLCSFSPCIEQVQNTCLKLADSKFQEIKTIEVLIRTFDTRLQ 244
Query: 249 RADCGQGTGGGSAGSIRHKRKQHLIEGSGE-----KENPNNSTVMARPNGEARGHTGYLT 303
+ T + + ++ E G+ E ++++P EARGHTGYLT
Sbjct: 245 EYEELNLTNPYIDNNNNNNNNNNIEENRGKFEIGGIEGLKKDKLLSKPFTEARGHTGYLT 304
Query: 304 FAR 306
FAR
Sbjct: 305 FAR 307
>sp|P0CS08|TRM61_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TRM61 PE=3 SV=1
Length = 433
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
AIP A K L++D I +C FSPC+EQV ++ LR F+DI T E+L+RT+E+
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLRSEGFSDISTQEVLIRTHEL 245
>sp|P0CS09|TRM61_CRYNB tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TRM61 PE=3 SV=1
Length = 433
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 16 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN--KGGFVYL 73
I+ GD+VI+Y D M A+ + F N++G + H IG+ +GS + S G+V++
Sbjct: 14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHV 73
Query: 74 LAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT 133
L PTPELWTL L HRTQILY+ DIS++ M L + G V+E+GTGSGS+T SL+R+V P+
Sbjct: 74 LRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPS 133
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW 193
G V +F++H QR +A ++FE G+++ V + R++ +GF D + + +FLDLP PW
Sbjct: 134 GQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGD--AQGVEGVFLDLPAPW 190
Query: 194 LAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
AIP A K L++D I +C FSPC+EQV ++ LR F+DI T E+L+RT+E+
Sbjct: 191 EAIPHAVKALRRDIITRICCFSPCLEQVLKTVTCLRSEGFSDISTQEVLIRTHEL 245
>sp|Q6CN53|TRM61_KLULA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TRM61
PE=3 SV=1
Length = 407
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 67/358 (18%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDLV+ + D +K + V F R+GAF HSD IGKPFGS + SN
Sbjct: 7 YKDTIKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSN 66
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
+ GF+++L PTPELW++ L HRTQI+Y D S+++ +E P V+E+GTGSGS + +
Sbjct: 67 RFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAF 126
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGFP--------D 176
AR+ GH+++++FHE R A+++F+ G+ + T+ RD+ GF
Sbjct: 127 ARSA---GHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSH 183
Query: 177 EFSG--------LADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL 226
EF G AD IFLDLP PW AIP+ ++ ++ LC FSPCIEQV ++ E+L
Sbjct: 184 EFRGPEETKVELNADCIFLDLPAPWDAIPNLTSVISKEKKVNLCCFSPCIEQVDKTLEAL 243
Query: 227 RLN-FTDIRTFEILLRTYEIRQW--------------------------RADCGQGTGGG 259
+ D++T EI R YE R+ + + Q + G
Sbjct: 244 EEEGWQDVQTVEIQGRQYEARRQMVRRLDDAIERLRDVKRRKHEGVEKRQKNVEQTSNNG 303
Query: 260 SA-------GSIRHKRKQHLI---EGSGEKENPNNS--TVMARPNGEARGHTGYLTFA 305
S+ ++H K H +GS KE +N T +++ E + HT +LTFA
Sbjct: 304 SSVEATESDKDLKHTEKTHFNPFGKGSRVKEGDSNFEWTQVSKVELEIKSHTSFLTFA 361
>sp|Q5A416|TRM61_CANAL tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=TRM61 PE=3 SV=1
Length = 335
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 142/242 (58%), Gaps = 8/242 (3%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
+ I+EGDLV+ Y +K + V + F R+G F+H IG +G + KG GF
Sbjct: 6 YKNYIEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
++LL PTPELWTL L HRTQI+Y D S++I L + PG V+E+GTGS S T S AR V
Sbjct: 66 IHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTV 125
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP-DEFSGLADSIFLDL 189
+G V+T++FHE R A+++ E + + T+ RD+ GF D S D +FLDL
Sbjct: 126 TLSGKVFTYEFHEPRYLEAKKELEEHKLDN-TTITHRDVCNDGFSIDNESIEGDVVFLDL 184
Query: 190 PQPWLAIPSAKKML---KQDGILCSFSPCIEQVQRSCESLRLN-FTDIRTFEILLRTYEI 245
P PW AIP ++ K GI C FSPCIEQV R+ +L N +T+I E+ + +
Sbjct: 185 PSPWDAIPHLDSVISTSKAAGICC-FSPCIEQVDRTVRALEENGWTEIEIVEVAAKRWSA 243
Query: 246 RQ 247
R+
Sbjct: 244 RK 245
>sp|P46959|TRM61_YEAST tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=GCD14 PE=1 SV=1
Length = 383
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 149/260 (57%), Gaps = 27/260 (10%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ IKEGDL +++ D +K V++ F R+G+F H D IGKP+GS + SN
Sbjct: 9 YKDLIKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSN 68
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
K FV++L PTPELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 69 KFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAF 128
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTG-VSSFVTVGVRDIQGQGF--------PDE 177
AR+V GH+++F+FH R A E+F+ G + VT+ RD+ GF E
Sbjct: 129 ARSV---GHLFSFEFHHIRYEQALEEFKEHGLIDDNVTITHRDVCQGGFLIKKGDTTSYE 185
Query: 178 F-------SGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESL-R 227
F S A+ +FLDLP PW AIP ++ D LC FSPCIEQV ++ + L +
Sbjct: 186 FGNNETAASLNANVVFLDLPAPWDAIPHLDSVISVDEKVGLCCFSPCIEQVDKTLDVLEK 245
Query: 228 LNFTDIRTFEILLRTYEIRQ 247
+TD+ EI R YE R+
Sbjct: 246 YGWTDVEMVEIQGRQYESRR 265
>sp|Q755M8|TRM61_ASHGO tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TRM61 PE=3 SV=1
Length = 406
Score = 184 bits (468), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 173/354 (48%), Gaps = 65/354 (18%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SN 66
+ I EGDLV+V+ +K +++ F R+G+F H D +G+P+GS + SN
Sbjct: 7 YKDLIAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSN 66
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
+ GF+++L PTPELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 67 RFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAF 126
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQGQGF---------- 174
AR V G +++++FH R A +F+ G+ VT+ RD+ +GF
Sbjct: 127 ARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGFLIKAGDTTSY 183
Query: 175 -----PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD--GILCSFSPCIEQVQRSCESLR 227
D S AD IFLDLP PW AIP ++ +D LC FSPCIEQV ++ E+L
Sbjct: 184 EFLEGQDSVSVNADCIFLDLPAPWEAIPHLDAVIAKDRTARLCCFSPCIEQVDKTLEALE 243
Query: 228 LN-FTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIE------------ 274
L+ + +I T EI R YE R R Q +RKQH E
Sbjct: 244 LHGWEEIETVEIQGRQYESR--RQMVRQLDDALERLRDVKRRKQHGTERRKRLGEQLGSV 301
Query: 275 ---------------------GSGEKENPN--NSTVMARPNGEARGHTGYLTFA 305
GS KE N +A+ E + HT YLTFA
Sbjct: 302 EELTDDVRPKTPKTSYNPFGKGSRVKEGDNGFEWKQVAKVESEIKSHTSYLTFA 355
>sp|Q6BX32|TRM61_DEBHA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TRM61 PE=3 SV=2
Length = 369
Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 145/249 (58%), Gaps = 13/249 (5%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GF 70
+ I+EGDLV+ + +K + V + S R+G F+H IG +G + KG GF
Sbjct: 6 YKDIIEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGF 65
Query: 71 VYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV 130
++LL PTPELWT+ L HRTQI+Y D S++I L + G V+E+GTGSGS + S AR +
Sbjct: 66 IHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTI 125
Query: 131 APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-----PDEFSG----L 181
G ++T++FHE R A+++ E G+ + + RD+ GF P++F
Sbjct: 126 GVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGIC 185
Query: 182 ADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRLN-FTDIRTFEI 238
D +FLDLP PW AIP+ K ++ +C FSPCIEQV+++ ++L +++I E+
Sbjct: 186 GDVVFLDLPSPWTAIPNLKSVISHQSRVGICCFSPCIEQVEKTVKALETEGWSNIEMVEV 245
Query: 239 LLRTYEIRQ 247
+ +E R+
Sbjct: 246 AGKRWEARK 254
>sp|O14307|TRM61_SCHPO tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cpd1 PE=3 SV=1
Length = 364
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 142/247 (57%), Gaps = 9/247 (3%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSN-KGG 69
+ + ++ GDL + + + + + + F N++GAF HS+ IGK +G + S K G
Sbjct: 5 DYKQRVENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQG 64
Query: 70 FVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARA 129
F+YLL PTPELWTL L HRTQI+Y DI+ + L + G V+E+GTGS S++ +++R
Sbjct: 65 FIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRT 124
Query: 130 VAPTGHVYTFDFHEQRAASAREDFER----TGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185
V P G ++TF++H R +A ++F V + RD+ GF D + D+I
Sbjct: 125 VGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDTEVKV-DAI 183
Query: 186 FLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRT 242
FLDLP PW AIP + D +C FSPCIEQ+Q S E+LR L + DI E+ +
Sbjct: 184 FLDLPAPWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEALRELGWCDIEMIEVDYKQ 243
Query: 243 YEIRQWR 249
+ R+ R
Sbjct: 244 WAARKSR 250
>sp|Q6FL77|TRM61_CANGA tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TRM61 PE=3 SV=1
Length = 374
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 144/260 (55%), Gaps = 27/260 (10%)
Query: 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FSN 66
+ I+EGDL +++ D +K V + N F R+G+F H D IGKP+GS + +
Sbjct: 8 YKDLIQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAK 67
Query: 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
K FV+++ P+PELWTL L HRTQI+Y D S+++ L P V+E+GTGSGS + +
Sbjct: 68 KFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAF 127
Query: 127 ARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGF----------- 174
AR+V G +Y+++FH R A E+F+ G+ T+ RD+ GF
Sbjct: 128 ARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIITHRDVCKDGFTIKKTDETSYQ 184
Query: 175 ----PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLRL 228
++ AD IFLDLP PW AIP ++ D LC FSPCIEQV ++ E L
Sbjct: 185 FKADEEQLQIKADVIFLDLPAPWEAIPHIDSVIDNDEKVGLCCFSPCIEQVDKTLEVLEK 244
Query: 229 N-FTDIRTFEILLRTYEIRQ 247
+ + ++ EI R YE R+
Sbjct: 245 HGWFNVEMVEIQGRQYESRR 264
>sp|Q6C0P9|TRM61_YARLI tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TRM61 PE=3 SV=1
Length = 389
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 150/243 (61%), Gaps = 11/243 (4%)
Query: 11 SFTRCIKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFSNK 67
++ I++GDLV+ + +K + V + F R+GAF H D G GSM +K
Sbjct: 4 AYKDTIEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SK 60
Query: 68 GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLA 127
GF++L+ PTPELWTL L HRTQI+Y D S+++ L++ PG V+ESGTGSGS T +++
Sbjct: 61 QGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAIS 120
Query: 128 RAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIF 186
R+ G VY+++FHE+R A+++FER +++ + RD+ GF E + A ++F
Sbjct: 121 RSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPTH-RDVCNDGFDIENIDVNATAVF 179
Query: 187 LDLPQPWLAIPSAKKMLKQDGI--LCSFSPCIEQVQRSCESLR-LNFTDIRTFEILLRTY 243
LDLP PW AIP ++++ + + +C FSPC EQV ++ ++L+ + DI E+ + +
Sbjct: 180 LDLPAPWTAIPHLERVIDRSVVSRVCCFSPCFEQVVKAVQALQEAGWVDIEMVEVAAKRW 239
Query: 244 EIR 246
E R
Sbjct: 240 ESR 242
>sp|Q4WUT7|TRM61_ASPFU tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=trm61 PE=3 SV=1
Length = 502
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/325 (32%), Positives = 156/325 (48%), Gaps = 84/325 (25%)
Query: 19 GDLVIVYERHD----CMKAVKVCQNSAFQN------RFGAFKHSDWIGKPFGSMVF---- 64
GDL +++ R D + ++ +N ++ RFG+F HS I +P+GS +
Sbjct: 15 GDLALLHLRRDQTIPTILKLEDDENQGYKEGKVTNTRFGSFPHSTLIDQPWGSQIVASVV 74
Query: 65 ------------------------SNK--------------GGFVYLLAPTPELWTLVLS 86
SNK GF++LL PTPELWT L
Sbjct: 75 DTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLP 134
Query: 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV-------APT------ 133
HRTQ++Y D S+++ L + PG ++E+G GSGS T + RAV AP
Sbjct: 135 HRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRL 194
Query: 134 GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEFSG---LADSIFLD 188
G V +F+FH QRA RE+ G+ + V V RD+ GF D +G A++IFLD
Sbjct: 195 GKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGFLLGDPKTGKSPKANAIFLD 254
Query: 189 LPQPWLAI-------PS-AKKMLKQDG--ILCSFSPCIEQVQRSCESLR-LNFTDIRTFE 237
LP PWLA+ PS A+ L +C+FSPCIEQVQR+ +LR ++ I E
Sbjct: 255 LPAPWLALKHLVRRPPSGAESPLDPSSPVYICTFSPCIEQVQRTITTLREYSWLSISMVE 314
Query: 238 ILLRTYEIRQWRA--DCGQGTGGGS 260
+ ++++ R DC +G G +
Sbjct: 315 VNHHRIDVKRERTGLDC-EGVRGAT 338
>sp|Q2U3W4|TRM61_ASPOR tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trm61
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=trm61 PE=3 SV=1
Length = 474
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 136/286 (47%), Gaps = 73/286 (25%)
Query: 45 RFGAFKHSDWIGKPFGSMVFSNK------------------------------------- 67
RFG+F H +P+GS + ++K
Sbjct: 51 RFGSFPHITLCDQPWGSQIIASKVDTGSRGRTQKMKRKADELDSSTQAEDKPSPQTPVAA 110
Query: 68 -GGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSL 126
GF++LL PTPELWT L HRTQ++Y D S+++ L PG V+E+G GSGS T +
Sbjct: 111 SSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAGAGSGSFTHAS 170
Query: 127 ARAV--------APT-----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173
RAV PT G V +F+FH QRA R + + G+ V V RD+ G
Sbjct: 171 VRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVEVTHRDVYEDG 230
Query: 174 F--PDEFSG---LADSIFLDLPQPWLAIPSAKKMLKQ--DGI-----------LCSFSPC 215
F D +G A++IFLDLP PWLA+ K +++ +G +C+FSPC
Sbjct: 231 FLLGDPKTGKSPKANAIFLDLPAPWLAL---KHLVRNPPEGTESPLDPTSPVYICTFSPC 287
Query: 216 IEQVQRSCESLR-LNFTDIRTFEILLRTYEIRQWRADCGQGTGGGS 260
+EQVQR+ +LR L + I E+ R E+++ R G G+
Sbjct: 288 LEQVQRTISTLRQLGWLGISMVEVNNRRIEVKRERVGLDLGNIRGT 333
>sp|Q9V1J7|TRMI_PYRAB tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=trmI PE=1
SV=1
Length = 253
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 49/296 (16%)
Query: 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLL 74
I+EGD V++ + + V + F G K + IG+ FG + S+KG +L
Sbjct: 1 MIREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKIL 59
Query: 75 APTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134
P + + QI++ D + ++ Y + PG ++E+G GSG+LT LA V P G
Sbjct: 60 RPRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEG 119
Query: 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL 194
V +++ E A A E+ + G VT+ ++DI +G +E D + LDLPQP
Sbjct: 120 RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEEN---VDHVILDLPQPER 175
Query: 195 AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI----RTFEILLRTYEIRQWRA 250
+ A K LK G +++PC QV R E LR F D RT +L+ E+++
Sbjct: 176 VVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR-EFKDYFMKPRTINVLVFDQEVKK--- 231
Query: 251 DCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFAR 306
+C RP A HTGY+TFAR
Sbjct: 232 EC------------------------------------MRPRTTALVHTGYITFAR 251
>sp|O33253|TRMI_MYCTU tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Mycobacterium
tuberculosis GN=trmI PE=1 SV=1
Length = 280
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 34 VKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILY 93
+ + + F G+ H IG GS+V S+ G +L P + + + Q++Y
Sbjct: 25 MSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIY 84
Query: 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153
D + ++ ++ PG VLE+G GSG+LT SL RAV P G V ++ EQRA A +
Sbjct: 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISY---EQRADHA--EH 139
Query: 154 ERTGVSSFV-------TVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD 206
R VS + V D+ PD G D LD+ PW + + ++L
Sbjct: 140 ARRNVSGCYGQPPDNWRLVVSDLADSELPD---GSVDRAVLDMLAPWEVLDAVSRLLVAG 196
Query: 207 GILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEI 245
G+L + + Q+ R E+LR +T+ R +E L R + +
Sbjct: 197 GVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNV 237
>sp|Q57598|TRMI_METJA tRNA (adenine(57)-N(1)/adenine(58)-N(1))-methyltransferase TrmI
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trmI PE=3
SV=1
Length = 282
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 31/204 (15%)
Query: 60 GSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGS 119
G + S+KG YL+ PT + L DI F+I + G V+E+GTGS
Sbjct: 39 GVELKSHKGHTFYLVEPTMFDILKRMKRTVTTLLPKDIGFIIARAGIREGETVVEAGTGS 98
Query: 120 GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS------------------- 160
G+LT L+ AV TG V T+D + A AR++ R G
Sbjct: 99 GALTMYLSNAVGKTGKVITYDIRPEFAKVARKNLLRVGAIKKGQKIIGLDEEFDDEDEIE 158
Query: 161 ------FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFS 213
V + D++ + DE D I LDLP PW + +AKK L K+ G + ++
Sbjct: 159 IEDGLFNVIQKIGDVREK--IDEKD--VDVIVLDLPDPWNVVENAKKALNKKRGRIVTYL 214
Query: 214 PCIEQVQRSCESLRLN-FTDIRTF 236
P IEQV+++ E L+ F DI T+
Sbjct: 215 PYIEQVKKTVEKLKEEGFWDIHTY 238
>sp|Q5SKN4|TRMI_THET8 tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trmI
PE=3 SV=1
Length = 255
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Query: 38 QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
+ F + G+ H + G +V ++ G + + PT E + L + Y D
Sbjct: 23 EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 82
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S ++ L+L PG VLE+GTGSG LT LARAV G V +++ A A ER
Sbjct: 83 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA----ERNV 138
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216
+ + VR G+ E A D + LDL +PW A+ A LK D L ++ P I
Sbjct: 139 RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKALEKAALALKPDRFLVAYLPNI 198
Query: 217 EQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
QV + + F R E+ R +E+R
Sbjct: 199 TQVLELVRAAEAHPFRLERVLEVGWREWEVR 229
>sp|Q8GBB2|TRMI_THET2 tRNA (adenine(58)-N(1))-methyltransferase TrmI OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=trmI PE=1 SV=2
Length = 255
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 95/211 (45%), Gaps = 6/211 (2%)
Query: 38 QNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADI 97
+ F + G+ H + G +V ++ G + + PT E + L + Y D
Sbjct: 23 EGGVFHHHKGSVPHEALLEAGPGGVVRTHLGEELSVHRPTLEEYLLHMKRSATPTYPKDA 82
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
S ++ L+L PG VLE+GTGSG LT LARAV G V +++ A A ER
Sbjct: 83 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQA----ERNV 138
Query: 158 VSSFVTVGVRDIQGQGFPDEFSGLA-DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216
+ + VR G+ E A D + LDL +PW + A LK D L ++ P I
Sbjct: 139 RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 198
Query: 217 EQVQRSCESLRLN-FTDIRTFEILLRTYEIR 246
QV + + F R E+ R +E+R
Sbjct: 199 TQVLELVRAAEAHPFRLERVLEVGWREWEVR 229
>sp|Q9BVS5|TR61B_HUMAN tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial OS=Homo
sapiens GN=TRMT61B PE=1 SV=2
Length = 477
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 23/221 (10%)
Query: 44 NRFGAFKHSDWIGKPFGSMVFSNKG-------GFVYLLA-PTPELWTLVLSHRTQILYIA 95
N FG +S+W PFG +V G G Y+L P E + +++ T I +
Sbjct: 175 NNFGLL-NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPK 233
Query: 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155
DI+ ++ +++ PG VLE+G+GSG ++ L++AV G V +F+ + A+++++
Sbjct: 234 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 293
Query: 156 -------TGVSSF---VTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQ 205
+ V + V +DI G D S D++ LD+ P + +P LK
Sbjct: 294 WRDSWKLSHVEEWPDNVDFIHKDISG-ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 352
Query: 206 DGILCSFSPCIEQVQRSCESLR---LNFTDIRTFEILLRTY 243
G+ + I QV + +R L + + E+++R +
Sbjct: 353 GGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVRDW 393
>sp|A2BKH8|PIMT_HYPBU Protein-L-isoaspartate O-methyltransferase OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=pcm PE=3 SV=1
Length = 241
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-------GHVYTFDFHEQRAASA 149
++ + Y +L PG VLE G GSG +A VAP+ GHVYT + + A A
Sbjct: 74 VAMMTEYADLKPGMKVLEVGAGSGYHAAVMAEVVAPSDEPREHWGHVYTIERIPELAEFA 133
Query: 150 REDFERTGVSSFVTVGVRDIQGQGFPDE 177
R + ER G + VTV V D +G+P++
Sbjct: 134 RRNLERAGYADRVTVIVGD-GSRGYPEK 160
>sp|A3DMG3|PIMT_STAMF Protein-L-isoaspartate O-methyltransferase OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=pcm PE=3
SV=1
Length = 225
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 104 LELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASAREDFERTGV 158
L+ PG +VLE GTGSG LA VA GHVYT + + A A+++ ERTG
Sbjct: 75 LDPEPGNIVLEIGTGSGYQAAVLAEIVAKQDPNRRGHVYTVERIPELAEFAKKNLERTGY 134
Query: 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKM 202
+VTV V D +G+P++ D I + P + P K++
Sbjct: 135 IEYVTVIVGD-GTKGYPEKAP--YDRIIVTAAAPEVPKPLLKQL 175
>sp|A8AAV7|PIMT_IGNH4 Protein-L-isoaspartate O-methyltransferase OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=pcm PE=3 SV=1
Length = 211
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
+++++ EL G VLE GTGSG +A V P GHVYT + + A ARE +
Sbjct: 64 VAYMVEAAELRRGDKVLEVGTGSGYHAAVMAELVGPEGHVYTIERIPELAERARERLKAL 123
Query: 157 GVSSFVTVGVRDIQGQGFP 175
G ++ VTV V D +G+P
Sbjct: 124 GYNN-VTVLVGD-GSKGYP 140
>sp|Q8TYL4|PIMT_METKA Protein-L-isoaspartate O-methyltransferase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pcm
PE=3 SV=1
Length = 226
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156
++ + L+ PG VLE G GSG +A V P G V T + + A AR + ++T
Sbjct: 71 VAIMTELLDPRPGHKVLEVGAGSGYHAAVVAELVKPDGRVITVERIPELADFARNNLKKT 130
Query: 157 GVSSFVTVGVRDIQGQGFPDE 177
G FV V V D +G+P E
Sbjct: 131 GYDRFVKVLVGD-GTKGYPPE 150
>sp|Q1LRG9|UBIE_RALME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 /
DSM 2839) GN=ubiE PE=3 SV=1
Length = 243
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
F I + PG VL+ G+G L + A+ PTG V+ D +E R+ GV
Sbjct: 49 FTIAQANVRPGQKVLDIAGGTGDLAKAFAKQAGPTGEVWLTDINESMLRVGRDRLLNKGV 108
Query: 159 SSFVTVGVRDIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSFSP 214
+ V + D + FPD + L F ++ A+ ++++K G ++ FS
Sbjct: 109 VT--PVALCDAERIPFPDNYFDLVTVAFGLRNMTHKDAALAEMRRVIKPGGKVMVLEFSK 166
Query: 215 CIEQVQRSCESLRLNFTDIRTFEIL 239
+ +++ F D+ +F++L
Sbjct: 167 VWKPLEK--------FYDVYSFKVL 183
>sp|Q21H69|UBIE_SACD2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=ubiE PE=3 SV=1
Length = 249
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Query: 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168
G VL+ G+G LT +R V PTG V D +E R+ +GV+ V D
Sbjct: 62 GHKVLDIAGGTGDLTKKFSRIVGPTGQVVLADINESMLNVGRDKLIDSGVAGNVVYTQAD 121
Query: 169 IQGQGFPDE-FSGLADSIFL-DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226
Q FPD F + + L ++ LAI S ++LK G L I + + +L
Sbjct: 122 AQYLPFPDNTFDCITIAFGLRNVTDKDLAIASMLRVLKPGGRL-----LILEFTKPQNAL 176
Query: 227 RLNFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEG 275
D +F+IL +I AD + A SIR Q ++G
Sbjct: 177 VEKAYDFYSFKILPTMGQIIAQDADSYRYL----AESIRMHPDQETLKG 221
>sp|A9AFC0|UBIE_BURM1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=ubiE PE=3 SV=1
Length = 243
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGYKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ VT + D + FPD + + F ++ +A+ +++ K G ++ F
Sbjct: 108 I---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDVALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DLYSFKVL 183
>sp|Q2T139|UBIE_BURTA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia thailandensis (strain E264 / ATCC 700388
/ DSM 13276 / CIP 106301) GN=ubiE PE=3 SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|Q63XA0|UBIE_BURPS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain K96243) GN=ubiE
PE=3 SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|A3N5U8|UBIE_BURP6 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 668) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|Q3JVZ6|UBIE_BURP1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 1710b) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|A3NRJ4|UBIE_BURP0 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia pseudomallei (strain 1106a) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|A1V753|UBIE_BURMS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain SAVP1) GN=ubiE PE=3 SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|Q62MP4|UBIE_BURMA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain ATCC 23344) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|A2S8L1|UBIE_BURM9 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain NCTC 10229) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|A3MNT8|UBIE_BURM7 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia mallei (strain NCTC 10247) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGGKVLDIAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKLPFPDNYFDVVTVAFGLRNMTHKDSALAEMRRVAKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S E ++++ D+ +F++L
Sbjct: 165 SKVWEPLKKAY--------DVYSFKVL 183
>sp|O26915|PIMT_METTH Protein-L-isoaspartate O-methyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pcm PE=3 SV=1
Length = 217
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 72 YLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA 131
Y+ P P +S + IA+I L+L PG VLE GTG G +A +
Sbjct: 45 YMDMPLPIGEGQTISAPHMVAMIAEI------LDLEPGMKVLEIGTGCGYNAAVIAEIIG 98
Query: 132 PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQ 191
P GH+YT + AR+ G + +TV + QGF DE I++
Sbjct: 99 PEGHLYTVERIGILYERARKKLRSLGYDN-ITV-IHGDGSQGFADEAP--YSRIYVTAAA 154
Query: 192 PWLAIPSAKKM 202
P++ P K++
Sbjct: 155 PYIPDPLMKQL 165
>sp|Q39D13|UBIE_BURS3 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia sp. (strain 383) GN=ubiE PE=3 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT + A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDLAAGTGDLTKAFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + L F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKIPFPDNYFDLVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
>sp|B4EBC4|UBIE_BURCJ Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=ubiE PE=3 SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
>sp|B1JYJ6|UBIE_BURCC Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain MC0-3) GN=ubiE PE=3
SV=1
Length = 243
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
V VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 V---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
>sp|Q9YDA1|PIMT_AERPE Protein-L-isoaspartate O-methyltransferase OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=pcm PE=3 SV=2
Length = 260
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 83 LVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFH 142
L + H I + ++ L+ PG VL+ G GSG + LA V P G VY +
Sbjct: 83 LPIGHGQTISAPGVVGRMLQLLDPQPGEKVLDVGAGSGYQSALLAELVTPGGRVYAVERI 142
Query: 143 EQRAASAREDFERTG 157
+ A ARE+ E+TG
Sbjct: 143 PELAEYARENLEKTG 157
>sp|A8H966|UBIE_SHEPA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=ubiE PE=3 SV=1
Length = 251
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 25/203 (12%)
Query: 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167
PG VL+ G+G LT +R V TG V D ++ RE G+ V
Sbjct: 63 PGMKVLDLAGGTGDLTAKFSRIVGETGQVTLADINDSMLKVGREKLRDKGIVGNVNYVQA 122
Query: 168 DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSFSPCIEQVQRSC 223
+ + FPD + F ++ AI S ++LK G ++ FS ++ R
Sbjct: 123 NAEALPFPDNHFDIITIAFGLRNVTNKDAAIASMLRVLKPGGKLLVLEFSKPQHEIMRKI 182
Query: 224 ESLRLNFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQ----HLIEGSG-E 278
DI +F++L + + AD + A SIR Q ++E +G E
Sbjct: 183 -------YDIYSFKVLPKMGSLITKDADSYEYL----AESIRMHPDQDTLKQMMEDAGFE 231
Query: 279 KENPNNSTVMARPNGEARGHTGY 301
+ N N T +G H GY
Sbjct: 232 QVNYTNMT-----DGIVALHKGY 249
>sp|A1RSC6|PIMT_PYRIL Protein-L-isoaspartate O-methyltransferase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=pcm PE=3 SV=1
Length = 207
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 99 FVIMYLELV---PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155
V M ELV PG +LE GTGSG A A+ G VYT + ++ A A ++ ER
Sbjct: 60 MVAMMCELVEPRPGMKILEVGTGSGYQAAVCAEAIERKGKVYTIEIVKELAIYAAQNIER 119
Query: 156 TGVSSFVTV 164
G V V
Sbjct: 120 LGYWGIVEV 128
>sp|A0KAF5|UBIE_BURCH Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain HI2424) GN=ubiE PE=3
SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 I---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
>sp|Q1BTN4|UBIE_BURCA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia cenocepacia (strain AU 1054) GN=ubiE
PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 I---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
>sp|Q475X0|UBIE_CUPPJ Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197)
GN=ubiE PE=3 SV=1
Length = 243
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158
F I + PG VL+ G+G L + A+ PTG V+ D +E R+ GV
Sbjct: 49 FTIAQANVRPGHKVLDIAGGTGDLAKAFAKQAGPTGQVWLTDINESMLRVGRDRLLDKGV 108
Query: 159 SSFVTVGVRDIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSFSP 214
+ V + D + FPD + L F ++ A+ ++++K G ++ FS
Sbjct: 109 VT--PVALCDAEHIPFPDNYFDLVTVAFGLRNMTHKDAALAEMRRVVKPGGKVMVLEFSK 166
Query: 215 CIEQVQRSCESLRLNFTDIRTFEIL 239
+ ++++ D+ +F++L
Sbjct: 167 VWKPLEKAY--------DVYSFQVL 183
>sp|Q0BBY4|UBIE_BURCM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
GN=ubiE PE=3 SV=1
Length = 243
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG 157
+F I + PG VL+ G+G LT S A+A PTG V+ D +E R+ G
Sbjct: 48 AFTIAQANVRPGFKVLDIAAGTGDLTKSFAKAAGPTGEVWHTDINESMLRVGRDRLLDKG 107
Query: 158 VSSFVTVGVR-DIQGQGFPDEFSGLADSIF--LDLPQPWLAIPSAKKMLKQDG--ILCSF 212
+ VT + D + FPD + + F ++ A+ +++ K G ++ F
Sbjct: 108 I---VTPSLLCDAEKIPFPDNYFDVVTVAFGLRNMTHKDAALAEMRRVTKPGGRVMVLEF 164
Query: 213 SPCIEQVQRSCESLRLNFTDIRTFEIL 239
S + ++++ D+ +F++L
Sbjct: 165 SKVWDPLKKAY--------DLYSFKVL 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,903,833
Number of Sequences: 539616
Number of extensions: 5405996
Number of successful extensions: 12597
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 12308
Number of HSP's gapped (non-prelim): 305
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)