Query 021550
Match_columns 311
No_of_seqs 420 out of 3425
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2519 GCD14 tRNA(1-methylade 100.0 3.4E-54 7.4E-59 363.8 27.0 253 15-310 1-254 (256)
2 KOG2915 tRNA(1-methyladenosine 100.0 7.2E-52 1.6E-56 349.0 28.0 301 4-308 1-310 (314)
3 PF08704 GCD14: tRNA methyltra 100.0 8.3E-47 1.8E-51 325.4 19.8 239 69-307 1-247 (247)
4 COG2226 UbiE Methylase involve 99.8 8E-18 1.7E-22 144.3 13.8 128 77-212 23-155 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 1.2E-17 2.7E-22 144.3 11.1 131 75-212 17-152 (233)
6 PRK00377 cbiT cobalt-precorrin 99.7 2.5E-16 5.3E-21 133.5 17.7 141 99-242 31-174 (198)
7 PRK08287 cobalt-precorrin-6Y C 99.7 7.3E-16 1.6E-20 129.4 18.5 143 97-246 20-165 (187)
8 COG2242 CobL Precorrin-6B meth 99.7 1.6E-15 3.6E-20 123.7 19.2 134 93-231 19-154 (187)
9 PRK04266 fibrillarin; Provisio 99.7 2E-15 4.4E-20 129.9 19.8 162 58-238 34-211 (226)
10 TIGR02752 MenG_heptapren 2-hep 99.7 2.5E-15 5.5E-20 130.3 17.0 112 99-214 36-152 (231)
11 PF12847 Methyltransf_18: Meth 99.7 6.6E-16 1.4E-20 118.5 11.5 100 108-212 1-110 (112)
12 COG2518 Pcm Protein-L-isoaspar 99.7 1E-15 2.2E-20 127.6 12.5 122 85-214 49-170 (209)
13 PRK13942 protein-L-isoaspartat 99.7 2.4E-15 5.1E-20 128.7 15.0 121 88-213 56-176 (212)
14 PRK07402 precorrin-6B methylas 99.7 6E-15 1.3E-19 124.8 17.3 148 95-246 27-176 (196)
15 PRK13944 protein-L-isoaspartat 99.7 3E-15 6.5E-20 127.5 15.1 120 89-212 53-172 (205)
16 TIGR00080 pimt protein-L-isoas 99.7 2.7E-15 5.8E-20 128.8 14.6 120 88-212 57-176 (215)
17 PRK14967 putative methyltransf 99.6 1.4E-15 3E-20 131.3 11.7 124 100-231 28-178 (223)
18 PF01135 PCMT: Protein-L-isoas 99.6 1.3E-15 2.9E-20 129.1 11.1 121 87-212 51-171 (209)
19 PLN02233 ubiquinone biosynthes 99.6 5.2E-15 1.1E-19 130.6 15.0 112 100-214 65-183 (261)
20 PF05175 MTS: Methyltransferas 99.6 3E-15 6.5E-20 123.7 12.3 132 99-239 22-163 (170)
21 PLN02244 tocopherol O-methyltr 99.6 1.3E-14 2.9E-19 132.7 17.3 110 99-213 104-223 (340)
22 PRK00121 trmB tRNA (guanine-N( 99.6 6.7E-15 1.5E-19 125.0 14.0 118 108-230 40-174 (202)
23 COG4123 Predicted O-methyltran 99.6 8.8E-15 1.9E-19 125.6 14.6 143 95-240 31-197 (248)
24 TIGR00091 tRNA (guanine-N(7)-) 99.6 8.8E-15 1.9E-19 123.5 12.6 116 108-228 16-147 (194)
25 KOG1540 Ubiquinone biosynthesi 99.6 1.4E-14 3.1E-19 122.4 13.5 133 78-216 73-217 (296)
26 PRK11873 arsM arsenite S-adeno 99.6 3.7E-14 8E-19 126.1 16.6 107 102-212 71-182 (272)
27 KOG1416 tRNA(1-methyladenosine 99.6 2.8E-14 6E-19 128.7 15.1 204 68-310 164-447 (475)
28 TIGR00446 nop2p NOL1/NOP2/sun 99.6 2.5E-14 5.5E-19 126.4 14.6 134 90-228 51-216 (264)
29 PRK00107 gidB 16S rRNA methylt 99.6 8.3E-14 1.8E-18 116.4 16.7 119 106-231 43-163 (187)
30 PF13847 Methyltransf_31: Meth 99.6 2.8E-14 6.1E-19 115.7 12.8 106 107-215 2-112 (152)
31 PRK14903 16S rRNA methyltransf 99.6 3.2E-14 7E-19 133.9 14.5 113 99-216 228-368 (431)
32 PTZ00146 fibrillarin; Provisio 99.6 2.7E-13 5.7E-18 119.4 18.2 132 102-237 126-271 (293)
33 COG4122 Predicted O-methyltran 99.6 3.2E-14 6.9E-19 120.4 11.9 124 87-211 38-164 (219)
34 TIGR00537 hemK_rel_arch HemK-r 99.6 1.3E-13 2.8E-18 115.0 15.3 125 99-233 10-161 (179)
35 PRK14901 16S rRNA methyltransf 99.6 7.7E-14 1.7E-18 131.8 15.4 112 99-215 243-385 (434)
36 TIGR02469 CbiT precorrin-6Y C5 99.6 1.2E-13 2.7E-18 107.5 13.8 110 99-212 10-121 (124)
37 PRK14904 16S rRNA methyltransf 99.5 5.6E-13 1.2E-17 126.4 20.2 111 99-215 241-378 (445)
38 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.3E-13 2.8E-18 126.1 15.2 127 97-228 111-250 (390)
39 TIGR00138 gidB 16S rRNA methyl 99.5 1.9E-13 4E-18 114.0 14.9 101 108-214 42-143 (181)
40 PRK11036 putative S-adenosyl-L 99.5 1.3E-13 2.7E-18 121.5 14.6 110 96-212 33-148 (255)
41 TIGR01177 conserved hypothetic 99.5 1.5E-13 3.2E-18 125.4 15.5 136 91-237 165-315 (329)
42 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.4E-14 7.4E-19 120.1 10.3 110 107-224 58-172 (243)
43 PLN02781 Probable caffeoyl-CoA 99.5 4E-14 8.6E-19 122.8 10.6 117 94-211 54-176 (234)
44 COG2264 PrmA Ribosomal protein 99.5 1.5E-13 3.3E-18 121.0 13.8 133 106-246 160-295 (300)
45 PRK14968 putative methyltransf 99.5 4.3E-13 9.2E-18 112.4 15.9 128 99-233 14-169 (188)
46 PTZ00098 phosphoethanolamine N 99.5 3E-13 6.6E-18 119.5 15.4 110 97-214 41-157 (263)
47 PRK00312 pcm protein-L-isoaspa 99.5 3.8E-13 8.3E-18 115.2 14.8 117 89-213 59-175 (212)
48 PRK11933 yebU rRNA (cytosine-C 99.5 4.8E-13 1.1E-17 126.2 16.8 136 89-228 90-259 (470)
49 TIGR00406 prmA ribosomal prote 99.5 5.4E-13 1.2E-17 119.4 16.0 121 106-233 157-279 (288)
50 PRK14902 16S rRNA methyltransf 99.5 1.4E-12 3E-17 123.7 19.6 114 99-216 241-381 (444)
51 PRK10901 16S rRNA methyltransf 99.5 1.3E-12 2.7E-17 123.4 19.2 118 91-215 225-373 (427)
52 PF02353 CMAS: Mycolic acid cy 99.5 1.8E-13 3.9E-18 121.0 12.5 108 97-212 51-165 (273)
53 COG2230 Cfa Cyclopropane fatty 99.5 2.9E-13 6.4E-18 118.3 13.5 109 97-213 61-176 (283)
54 PLN02476 O-methyltransferase 99.5 1.3E-13 2.8E-18 121.2 11.2 118 93-211 103-226 (278)
55 PRK15001 SAM-dependent 23S rib 99.5 3.9E-13 8.4E-18 123.5 14.5 129 99-235 219-359 (378)
56 PF08241 Methyltransf_11: Meth 99.5 1.4E-13 3E-18 101.8 9.2 90 113-211 1-95 (95)
57 PLN02396 hexaprenyldihydroxybe 99.5 2.1E-13 4.5E-18 123.1 12.1 103 107-215 130-237 (322)
58 PRK11207 tellurite resistance 99.5 3.6E-13 7.8E-18 114.0 12.8 104 100-211 22-132 (197)
59 PF13659 Methyltransf_26: Meth 99.5 9.8E-14 2.1E-18 107.2 8.0 101 109-214 1-116 (117)
60 TIGR00563 rsmB ribosomal RNA s 99.5 5.8E-13 1.3E-17 125.6 14.8 109 99-211 229-366 (426)
61 PRK13943 protein-L-isoaspartat 99.5 7.7E-13 1.7E-17 119.4 14.1 117 92-213 64-180 (322)
62 PF06325 PrmA: Ribosomal prote 99.5 3.2E-13 6.9E-18 120.1 11.4 130 106-246 159-290 (295)
63 PRK11188 rrmJ 23S rRNA methylt 99.5 8.3E-13 1.8E-17 112.7 13.5 121 100-235 42-187 (209)
64 TIGR03533 L3_gln_methyl protei 99.5 2E-12 4.3E-17 115.4 16.2 115 107-228 120-264 (284)
65 PF01596 Methyltransf_3: O-met 99.5 1.1E-13 2.3E-18 117.2 7.6 118 93-211 30-153 (205)
66 PRK14103 trans-aconitate 2-met 99.5 3.8E-13 8.2E-18 118.5 11.2 103 98-213 19-126 (255)
67 TIGR03534 RF_mod_PrmC protein- 99.5 2.7E-12 5.9E-17 112.6 16.3 123 108-237 87-241 (251)
68 PRK00517 prmA ribosomal protei 99.5 1.6E-12 3.5E-17 114.1 14.8 125 106-245 117-244 (250)
69 PRK10258 biotin biosynthesis p 99.5 6.4E-13 1.4E-17 116.8 12.0 117 93-221 27-148 (251)
70 COG2813 RsmC 16S RNA G1207 met 99.5 1.5E-12 3.2E-17 114.2 14.1 130 99-238 149-288 (300)
71 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.4E-12 2.9E-17 118.3 14.3 131 100-238 104-257 (340)
72 PRK08317 hypothetical protein; 99.5 1.9E-12 4.2E-17 112.3 14.8 111 99-214 10-125 (241)
73 smart00828 PKS_MT Methyltransf 99.5 2.5E-12 5.5E-17 111.0 15.2 123 110-237 1-144 (224)
74 PRK15068 tRNA mo(5)U34 methylt 99.5 2.4E-12 5.2E-17 116.8 15.5 133 100-238 114-275 (322)
75 TIGR00452 methyltransferase, p 99.4 3.1E-12 6.7E-17 115.1 15.5 133 100-238 113-274 (314)
76 TIGR00438 rrmJ cell division p 99.4 2.2E-12 4.7E-17 108.4 13.6 117 102-233 26-166 (188)
77 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.1E-12 2.4E-17 115.0 12.1 103 106-213 54-164 (247)
78 TIGR00536 hemK_fam HemK family 99.4 5.5E-12 1.2E-16 112.8 16.6 122 109-236 115-268 (284)
79 TIGR00477 tehB tellurite resis 99.4 1.4E-12 3.1E-17 110.1 11.9 105 99-212 21-132 (195)
80 PRK14966 unknown domain/N5-glu 99.4 8.3E-12 1.8E-16 115.1 17.5 135 106-246 249-414 (423)
81 PRK01683 trans-aconitate 2-met 99.4 1.6E-12 3.5E-17 114.6 12.5 108 96-214 19-131 (258)
82 PRK00216 ubiE ubiquinone/menaq 99.4 1.3E-11 2.9E-16 107.2 17.7 111 99-212 42-157 (239)
83 TIGR00740 methyltransferase, p 99.4 2.8E-12 6E-17 111.9 13.3 104 106-214 51-162 (239)
84 PLN02336 phosphoethanolamine N 99.4 2.8E-12 6.1E-17 122.9 14.6 107 99-212 257-368 (475)
85 PRK13168 rumA 23S rRNA m(5)U19 99.4 4.3E-12 9.4E-17 120.3 15.7 141 99-247 288-436 (443)
86 PLN03075 nicotianamine synthas 99.4 3.3E-12 7.1E-17 113.0 13.3 107 104-213 119-233 (296)
87 PRK09328 N5-glutamine S-adenos 99.4 1.1E-11 2.5E-16 110.2 16.7 127 102-235 102-260 (275)
88 PRK09489 rsmC 16S ribosomal RN 99.4 9.1E-12 2E-16 113.7 16.1 136 99-246 187-332 (342)
89 TIGR03704 PrmC_rel_meth putati 99.4 8.1E-12 1.8E-16 109.5 14.7 117 108-231 86-234 (251)
90 PRK12335 tellurite resistance 99.4 2.6E-11 5.6E-16 108.6 18.2 103 101-212 113-222 (287)
91 PF02390 Methyltransf_4: Putat 99.4 4.9E-12 1.1E-16 106.5 12.5 113 111-228 20-148 (195)
92 PRK11805 N5-glutamine S-adenos 99.4 1.8E-11 4E-16 110.3 17.0 101 109-214 134-264 (307)
93 PRK01544 bifunctional N5-gluta 99.4 6.6E-12 1.4E-16 120.5 14.8 127 108-240 138-296 (506)
94 PRK04457 spermidine synthase; 99.4 1.5E-11 3.2E-16 108.5 15.5 124 106-232 64-197 (262)
95 PLN02589 caffeoyl-CoA O-methyl 99.4 1.7E-12 3.7E-17 112.8 9.4 117 94-211 65-188 (247)
96 COG2890 HemK Methylase of poly 99.4 2.2E-11 4.7E-16 108.3 15.4 121 111-239 113-265 (280)
97 COG4106 Tam Trans-aconitate me 99.4 4E-12 8.7E-17 105.2 9.6 106 100-216 22-132 (257)
98 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 5.3E-11 1.2E-15 102.3 17.0 108 100-213 31-143 (223)
99 PF06080 DUF938: Protein of un 99.3 4.4E-12 9.6E-17 105.8 9.0 136 110-246 27-186 (204)
100 PRK11088 rrmA 23S rRNA methylt 99.3 1.9E-11 4E-16 108.8 13.7 109 107-226 84-194 (272)
101 COG0144 Sun tRNA and rRNA cyto 99.3 3.8E-11 8.2E-16 110.3 16.0 126 87-216 133-290 (355)
102 PRK06922 hypothetical protein; 99.3 1.5E-11 3.2E-16 118.5 13.2 108 101-214 411-538 (677)
103 KOG1270 Methyltransferases [Co 99.3 4E-12 8.7E-17 108.4 8.2 96 109-213 90-195 (282)
104 PRK00811 spermidine synthase; 99.3 4.1E-11 8.8E-16 106.9 15.1 129 108-239 76-221 (283)
105 TIGR02716 C20_methyl_CrtF C-20 99.3 2.4E-11 5.1E-16 109.9 13.6 109 98-213 139-254 (306)
106 COG1041 Predicted DNA modifica 99.3 2E-11 4.4E-16 109.0 12.3 138 91-239 180-332 (347)
107 TIGR00479 rumA 23S rRNA (uraci 99.3 3.1E-11 6.8E-16 114.2 14.4 140 99-245 283-430 (431)
108 PRK15128 23S rRNA m(5)C1962 me 99.3 3E-11 6.4E-16 112.3 13.9 119 107-228 219-355 (396)
109 PF03848 TehB: Tellurite resis 99.3 2.4E-11 5.2E-16 101.2 11.7 105 99-212 21-132 (192)
110 PF08242 Methyltransf_12: Meth 99.3 1E-12 2.2E-17 98.6 2.6 94 113-209 1-99 (99)
111 PF13649 Methyltransf_25: Meth 99.3 4.3E-12 9.3E-17 95.5 6.1 91 112-207 1-101 (101)
112 PRK10909 rsmD 16S rRNA m(2)G96 99.3 4.3E-11 9.2E-16 101.0 12.4 103 107-214 52-160 (199)
113 TIGR02072 BioC biotin biosynth 99.3 3.5E-11 7.7E-16 104.4 12.4 102 107-217 33-139 (240)
114 PRK03522 rumB 23S rRNA methylu 99.3 4.1E-11 9E-16 108.7 12.8 141 100-247 165-308 (315)
115 PF08003 Methyltransf_9: Prote 99.3 1.5E-10 3.2E-15 101.7 15.3 134 100-239 107-269 (315)
116 KOG1271 Methyltransferases [Ge 99.3 4.6E-11 1E-15 96.3 11.0 119 110-233 69-201 (227)
117 PRK11705 cyclopropane fatty ac 99.3 4.2E-11 9.1E-16 111.1 12.3 102 99-212 158-266 (383)
118 COG0220 Predicted S-adenosylme 99.3 7.4E-11 1.6E-15 101.1 12.8 109 109-221 49-172 (227)
119 smart00650 rADc Ribosomal RNA 99.3 1.1E-10 2.4E-15 96.3 12.9 105 98-211 3-111 (169)
120 PF05401 NodS: Nodulation prot 99.2 6.1E-11 1.3E-15 97.8 10.5 126 103-238 38-180 (201)
121 PRK05785 hypothetical protein; 99.2 1.4E-10 3.1E-15 100.1 12.8 89 108-210 51-144 (226)
122 COG2521 Predicted archaeal met 99.2 3.2E-11 7E-16 100.9 8.2 134 100-238 126-278 (287)
123 KOG4300 Predicted methyltransf 99.2 9E-11 2E-15 96.6 10.5 138 103-246 71-215 (252)
124 TIGR02085 meth_trns_rumB 23S r 99.2 1.9E-10 4E-15 106.7 13.8 139 101-247 226-368 (374)
125 PRK01581 speE spermidine synth 99.2 3E-10 6.5E-15 102.9 14.1 129 108-239 150-298 (374)
126 COG1064 AdhP Zn-dependent alco 99.2 1.1E-10 2.4E-15 104.8 11.1 172 15-213 78-259 (339)
127 COG1063 Tdh Threonine dehydrog 99.2 6.8E-11 1.5E-15 108.9 9.5 187 14-216 74-272 (350)
128 PF13489 Methyltransf_23: Meth 99.2 5.7E-11 1.2E-15 96.6 8.0 100 100-216 13-118 (161)
129 KOG2904 Predicted methyltransf 99.2 4.1E-10 8.9E-15 96.5 13.3 142 57-212 110-284 (328)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.2 8.8E-11 1.9E-15 117.1 10.7 117 107-228 537-670 (702)
131 TIGR00417 speE spermidine synt 99.2 4.8E-10 1E-14 99.5 14.2 129 108-239 72-216 (270)
132 KOG3191 Predicted N6-DNA-methy 99.2 5.5E-10 1.2E-14 90.2 12.9 120 108-233 43-189 (209)
133 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.2 1.3E-10 2.7E-15 103.7 10.1 113 99-216 76-221 (283)
134 PLN02366 spermidine synthase 99.2 8.5E-10 1.9E-14 99.2 15.5 122 107-230 90-227 (308)
135 PF01170 UPF0020: Putative RNA 99.2 1.9E-10 4.1E-15 95.7 10.3 113 90-205 10-143 (179)
136 smart00138 MeTrc Methyltransfe 99.2 9E-11 1.9E-15 103.7 8.5 103 106-211 97-240 (264)
137 PLN02672 methionine S-methyltr 99.2 5.4E-10 1.2E-14 114.1 15.0 126 109-238 119-304 (1082)
138 PF14801 GCD14_N: tRNA methylt 99.2 3.7E-11 8E-16 76.3 4.1 52 12-63 2-53 (54)
139 PF04189 Gcd10p: Gcd10p family 99.2 5.2E-10 1.1E-14 99.4 13.0 126 14-139 2-232 (299)
140 PLN02336 phosphoethanolamine N 99.2 4.1E-10 8.8E-15 108.0 13.0 111 93-212 22-141 (475)
141 PRK05134 bifunctional 3-demeth 99.2 5.4E-10 1.2E-14 97.0 12.5 113 94-214 34-152 (233)
142 PHA03412 putative methyltransf 99.1 4.1E-10 9E-15 96.2 11.2 108 90-208 32-158 (241)
143 KOG1661 Protein-L-isoaspartate 99.1 3.5E-10 7.6E-15 93.4 10.1 120 89-212 61-192 (237)
144 TIGR03840 TMPT_Se_Te thiopurin 99.1 4.3E-10 9.4E-15 96.1 11.2 103 105-212 31-151 (213)
145 KOG1122 tRNA and rRNA cytosine 99.1 5.1E-10 1.1E-14 101.3 11.9 132 99-234 232-394 (460)
146 COG2263 Predicted RNA methylas 99.1 2.7E-09 5.8E-14 87.2 14.9 109 105-228 42-157 (198)
147 TIGR02143 trmA_only tRNA (urac 99.1 6E-10 1.3E-14 102.4 12.6 140 100-247 190-346 (353)
148 PRK03612 spermidine synthase; 99.1 4.7E-10 1E-14 108.3 12.2 133 107-243 296-449 (521)
149 TIGR02021 BchM-ChlM magnesium 99.1 7.6E-10 1.6E-14 95.2 12.2 106 100-215 45-159 (219)
150 KOG1663 O-methyltransferase [S 99.1 6.5E-10 1.4E-14 93.4 11.3 122 90-211 54-181 (237)
151 PF01269 Fibrillarin: Fibrilla 99.1 6.6E-09 1.4E-13 87.4 17.2 129 103-234 68-209 (229)
152 PF03602 Cons_hypoth95: Conser 99.1 1.1E-10 2.3E-15 97.4 6.4 104 107-213 41-153 (183)
153 TIGR01983 UbiG ubiquinone bios 99.1 2.3E-09 4.9E-14 92.4 14.8 102 107-214 44-150 (224)
154 PF07021 MetW: Methionine bios 99.1 7E-10 1.5E-14 91.4 10.8 113 96-226 3-122 (193)
155 PRK13255 thiopurine S-methyltr 99.1 1.1E-09 2.5E-14 93.8 12.3 99 105-211 34-153 (218)
156 KOG1541 Predicted protein carb 99.1 1.1E-09 2.3E-14 91.2 11.4 132 88-231 28-181 (270)
157 PRK05031 tRNA (uracil-5-)-meth 99.1 1.2E-09 2.5E-14 101.0 12.7 141 100-247 199-355 (362)
158 PLN02823 spermine synthase 99.1 2.1E-09 4.5E-14 97.7 14.1 128 108-238 103-251 (336)
159 TIGR03587 Pse_Me-ase pseudamin 99.1 6.9E-10 1.5E-14 94.3 10.0 93 106-211 41-140 (204)
160 PRK01544 bifunctional N5-gluta 99.1 1.5E-09 3.2E-14 104.4 13.2 117 107-228 346-477 (506)
161 TIGR03438 probable methyltrans 99.1 1.4E-09 2.9E-14 98.1 11.9 106 107-212 62-176 (301)
162 COG1092 Predicted SAM-dependen 99.1 1.1E-09 2.3E-14 100.8 11.3 104 107-213 216-336 (393)
163 COG0742 N6-adenine-specific me 99.1 3E-09 6.4E-14 87.6 12.5 103 107-212 42-153 (187)
164 PF02475 Met_10: Met-10+ like- 99.1 1.1E-09 2.3E-14 92.2 10.0 100 106-210 99-199 (200)
165 COG2265 TrmA SAM-dependent met 99.1 2.4E-09 5.1E-14 100.4 13.1 145 95-245 280-430 (432)
166 TIGR00095 RNA methyltransferas 99.0 1.8E-09 3.9E-14 90.6 10.7 103 107-212 48-158 (189)
167 PTZ00338 dimethyladenosine tra 99.0 1.5E-09 3.2E-14 97.2 10.4 91 94-192 22-112 (294)
168 PHA03411 putative methyltransf 99.0 2.8E-09 6.1E-14 93.1 11.6 115 105-230 61-207 (279)
169 KOG1499 Protein arginine N-met 99.0 1.6E-09 3.5E-14 96.5 9.8 105 100-210 52-164 (346)
170 KOG0024 Sorbitol dehydrogenase 99.0 4.7E-09 1E-13 92.4 11.4 176 15-212 82-272 (354)
171 PRK06202 hypothetical protein; 99.0 6.3E-09 1.4E-13 90.3 12.2 99 104-211 56-164 (232)
172 cd02440 AdoMet_MTases S-adenos 99.0 6.3E-09 1.4E-13 77.1 10.5 96 111-212 1-103 (107)
173 PF10672 Methyltrans_SAM: S-ad 99.0 3.4E-09 7.3E-14 93.9 10.0 103 107-212 122-237 (286)
174 PRK04338 N(2),N(2)-dimethylgua 99.0 4.1E-09 8.9E-14 97.6 10.7 100 108-212 57-157 (382)
175 COG2520 Predicted methyltransf 99.0 1.3E-08 2.8E-13 91.9 13.3 107 106-217 186-293 (341)
176 COG3963 Phospholipid N-methylt 99.0 6.9E-09 1.5E-13 82.8 10.1 123 86-214 23-157 (194)
177 PRK07580 Mg-protoporphyrin IX 99.0 8.2E-09 1.8E-13 89.3 11.6 100 106-215 61-167 (230)
178 PLN02585 magnesium protoporphy 98.9 4E-08 8.6E-13 88.7 16.1 98 108-215 144-252 (315)
179 PRK14896 ksgA 16S ribosomal RN 98.9 6.3E-09 1.4E-13 91.8 10.7 90 93-193 14-103 (258)
180 KOG0820 Ribosomal RNA adenine 98.9 6.4E-09 1.4E-13 89.3 10.0 89 94-190 44-132 (315)
181 COG1889 NOP1 Fibrillarin-like 98.9 6.6E-08 1.4E-12 79.6 15.4 158 58-234 38-211 (231)
182 KOG1596 Fibrillarin and relate 98.9 5E-08 1.1E-12 82.3 15.0 142 101-249 149-309 (317)
183 PF09445 Methyltransf_15: RNA 98.9 4.1E-09 8.9E-14 85.4 8.1 113 110-226 1-132 (163)
184 COG0421 SpeE Spermidine syntha 98.9 1.5E-08 3.3E-13 89.6 12.0 109 100-212 69-189 (282)
185 PRK00536 speE spermidine synth 98.9 3.9E-08 8.4E-13 86.1 14.2 137 93-239 58-201 (262)
186 PRK00274 ksgA 16S ribosomal RN 98.9 6.9E-09 1.5E-13 92.2 9.3 96 95-200 29-126 (272)
187 PF05958 tRNA_U5-meth_tr: tRNA 98.9 9.6E-09 2.1E-13 94.5 10.5 141 97-247 186-345 (352)
188 PRK13256 thiopurine S-methyltr 98.9 1.3E-08 2.8E-13 87.2 10.5 105 104-212 39-162 (226)
189 PRK11727 23S rRNA mA1618 methy 98.9 4.8E-08 1E-12 88.0 14.4 81 108-190 114-198 (321)
190 TIGR00755 ksgA dimethyladenosi 98.9 3.4E-08 7.4E-13 86.9 12.4 103 93-208 14-121 (253)
191 PF01564 Spermine_synth: Sperm 98.9 1.5E-08 3.2E-13 88.6 10.0 130 108-240 76-222 (246)
192 TIGR02081 metW methionine bios 98.8 1.2E-07 2.6E-12 80.0 14.3 104 96-217 3-113 (194)
193 COG0293 FtsJ 23S rRNA methylas 98.8 5.3E-08 1.1E-12 81.4 10.9 119 106-236 43-182 (205)
194 PF02384 N6_Mtase: N-6 DNA Met 98.8 1.6E-08 3.4E-13 91.7 8.5 126 89-215 26-185 (311)
195 KOG3420 Predicted RNA methylas 98.8 7.5E-09 1.6E-13 80.6 5.0 127 107-245 47-182 (185)
196 PRK00050 16S rRNA m(4)C1402 me 98.8 2.1E-08 4.5E-13 89.3 8.3 93 94-190 5-99 (296)
197 PF05185 PRMT5: PRMT5 arginine 98.8 4.6E-08 1E-12 92.3 10.6 98 109-210 187-294 (448)
198 PF05724 TPMT: Thiopurine S-me 98.8 5.7E-08 1.2E-12 83.2 10.1 104 101-209 30-151 (218)
199 PRK09880 L-idonate 5-dehydroge 98.8 7.9E-08 1.7E-12 88.3 11.8 181 14-214 77-267 (343)
200 PF02527 GidB: rRNA small subu 98.8 2.8E-07 6E-12 76.7 13.9 112 111-228 51-165 (184)
201 TIGR00308 TRM1 tRNA(guanine-26 98.8 8E-08 1.7E-12 88.6 11.6 101 110-213 46-147 (374)
202 KOG1500 Protein arginine N-met 98.8 7.8E-08 1.7E-12 84.8 10.7 98 106-210 175-279 (517)
203 COG0030 KsgA Dimethyladenosine 98.7 6.5E-08 1.4E-12 84.1 10.0 89 96-192 18-106 (259)
204 PF00891 Methyltransf_2: O-met 98.7 1.4E-07 3E-12 82.4 11.6 101 99-214 91-200 (241)
205 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.4E-07 5.1E-12 92.7 14.4 127 90-217 171-351 (702)
206 COG4976 Predicted methyltransf 98.7 5.4E-09 1.2E-13 87.5 2.1 115 90-214 107-226 (287)
207 KOG4589 Cell division protein 98.7 1.6E-07 3.6E-12 76.3 9.6 116 106-236 67-207 (232)
208 KOG2198 tRNA cytosine-5-methyl 98.6 5.3E-07 1.2E-11 81.1 12.9 127 88-216 133-298 (375)
209 PF10294 Methyltransf_16: Puta 98.6 2.2E-07 4.8E-12 76.9 9.5 121 105-227 42-171 (173)
210 KOG3010 Methyltransferase [Gen 98.6 8.8E-08 1.9E-12 81.1 7.0 107 103-215 27-139 (261)
211 KOG2899 Predicted methyltransf 98.6 5.7E-07 1.2E-11 76.2 11.5 105 107-212 57-208 (288)
212 KOG2187 tRNA uracil-5-methyltr 98.6 6.2E-07 1.3E-11 83.7 12.5 125 99-228 374-505 (534)
213 TIGR03366 HpnZ_proposed putati 98.6 2.9E-07 6.2E-12 82.2 10.2 182 15-214 25-219 (280)
214 COG0116 Predicted N6-adenine-s 98.6 1.8E-06 3.8E-11 78.7 14.8 123 89-214 172-345 (381)
215 COG1062 AdhC Zn-dependent alco 98.6 7.3E-07 1.6E-11 79.4 11.8 107 99-212 176-284 (366)
216 PLN02232 ubiquinone biosynthes 98.6 2.9E-07 6.2E-12 75.2 8.6 75 137-214 1-82 (160)
217 TIGR02819 fdhA_non_GSH formald 98.6 6.8E-07 1.5E-11 83.7 11.8 186 15-215 82-301 (393)
218 PF01728 FtsJ: FtsJ-like methy 98.6 1.2E-07 2.7E-12 78.9 6.1 123 100-234 12-160 (181)
219 PF03291 Pox_MCEL: mRNA cappin 98.6 4.1E-07 8.9E-12 82.7 9.9 109 108-219 62-192 (331)
220 KOG2361 Predicted methyltransf 98.5 1.3E-07 2.9E-12 80.0 5.6 99 111-212 74-182 (264)
221 PF08123 DOT1: Histone methyla 98.5 1.8E-07 4E-12 79.1 6.0 123 92-215 26-160 (205)
222 KOG3115 Methyltransferase-like 98.5 1.7E-07 3.8E-12 77.1 5.4 152 109-282 61-233 (249)
223 COG0357 GidB Predicted S-adeno 98.5 2.4E-06 5.3E-11 72.4 12.5 114 109-228 68-185 (215)
224 cd08239 THR_DH_like L-threonin 98.5 3.6E-07 7.9E-12 83.6 8.1 180 15-215 75-264 (339)
225 cd08281 liver_ADH_like1 Zinc-d 98.5 1.1E-06 2.4E-11 81.6 11.3 107 101-214 184-291 (371)
226 COG4076 Predicted RNA methylas 98.5 3E-07 6.5E-12 74.9 5.8 92 110-210 34-132 (252)
227 PF05148 Methyltransf_8: Hypot 98.5 7.7E-07 1.7E-11 74.3 8.2 114 98-234 61-182 (219)
228 TIGR00478 tly hemolysin TlyA f 98.4 8E-07 1.7E-11 76.5 8.4 103 100-214 66-173 (228)
229 TIGR02987 met_A_Alw26 type II 98.4 2.2E-06 4.8E-11 83.3 12.1 82 108-190 31-121 (524)
230 cd08230 glucose_DH Glucose deh 98.4 4.8E-06 1E-10 76.8 12.8 97 106-214 170-270 (355)
231 KOG1975 mRNA cap methyltransfe 98.4 1.9E-06 4.2E-11 75.9 9.4 118 106-226 115-250 (389)
232 PRK10309 galactitol-1-phosphat 98.4 1.3E-06 2.8E-11 80.3 8.4 178 15-214 74-261 (347)
233 PLN02740 Alcohol dehydrogenase 98.3 2.9E-06 6.3E-11 79.1 10.1 106 102-214 192-301 (381)
234 PF13578 Methyltransf_24: Meth 98.3 1.7E-07 3.7E-12 70.9 1.0 97 113-211 1-103 (106)
235 COG0275 Predicted S-adenosylme 98.3 1.5E-05 3.4E-10 70.0 13.2 90 98-189 13-104 (314)
236 PF04816 DUF633: Family of unk 98.3 7.6E-06 1.7E-10 69.3 11.0 131 112-249 1-138 (205)
237 PF05219 DREV: DREV methyltran 98.3 5.4E-06 1.2E-10 71.6 10.1 88 108-211 94-186 (265)
238 PRK04148 hypothetical protein; 98.3 8.8E-06 1.9E-10 63.7 10.3 100 99-212 7-108 (134)
239 PF00398 RrnaAD: Ribosomal RNA 98.3 7.4E-06 1.6E-10 72.4 11.3 107 93-205 15-123 (262)
240 TIGR03451 mycoS_dep_FDH mycoth 98.3 7.8E-06 1.7E-10 75.5 11.7 107 101-214 169-277 (358)
241 KOG0022 Alcohol dehydrogenase, 98.3 8.6E-06 1.9E-10 71.8 10.8 106 99-212 183-293 (375)
242 PLN02827 Alcohol dehydrogenase 98.3 8.4E-06 1.8E-10 76.0 11.6 106 102-214 187-296 (378)
243 PF03059 NAS: Nicotianamine sy 98.3 7.1E-06 1.5E-10 72.2 10.1 101 110-213 122-230 (276)
244 cd08237 ribitol-5-phosphate_DH 98.3 1.2E-05 2.6E-10 73.9 12.2 96 104-214 159-257 (341)
245 COG4262 Predicted spermidine s 98.3 1.5E-05 3.2E-10 71.5 11.9 103 106-212 287-406 (508)
246 KOG3045 Predicted RNA methylas 98.3 6.4E-06 1.4E-10 70.6 9.2 112 98-234 169-288 (325)
247 TIGR02818 adh_III_F_hyde S-(hy 98.2 7.8E-06 1.7E-10 75.9 10.6 106 102-214 179-288 (368)
248 PF01861 DUF43: Protein of unk 98.2 0.00017 3.6E-09 61.9 16.9 121 108-233 44-174 (243)
249 PF01795 Methyltransf_5: MraW 98.2 8.3E-06 1.8E-10 72.9 9.3 94 94-190 6-102 (310)
250 PRK10611 chemotaxis methyltran 98.2 4.3E-06 9.3E-11 74.4 7.4 100 110-211 117-260 (287)
251 cd08301 alcohol_DH_plants Plan 98.2 1.7E-05 3.7E-10 73.6 11.7 107 101-214 180-290 (369)
252 PF05891 Methyltransf_PK: AdoM 98.2 2.7E-06 5.8E-11 71.7 5.5 98 108-211 55-159 (218)
253 KOG2730 Methylase [General fun 98.2 2.5E-06 5.3E-11 71.3 5.1 77 108-190 94-174 (263)
254 cd08300 alcohol_DH_class_III c 98.2 1.2E-05 2.5E-10 74.7 10.3 107 101-214 179-289 (368)
255 TIGR00006 S-adenosyl-methyltra 98.2 8.6E-06 1.9E-10 72.8 8.8 94 94-190 6-101 (305)
256 TIGR02822 adh_fam_2 zinc-bindi 98.1 2.9E-05 6.2E-10 71.0 11.9 97 101-214 158-255 (329)
257 PLN02586 probable cinnamyl alc 98.1 2.7E-05 5.9E-10 72.1 11.8 177 15-214 87-279 (360)
258 COG0286 HsdM Type I restrictio 98.1 2.9E-05 6.4E-10 74.5 12.0 128 89-216 166-329 (489)
259 COG1352 CheR Methylase of chem 98.1 1E-05 2.2E-10 71.1 7.7 100 109-211 97-239 (268)
260 PF12147 Methyltransf_20: Puta 98.1 9.3E-05 2E-09 64.9 13.3 120 108-228 135-265 (311)
261 PF13679 Methyltransf_32: Meth 98.1 4E-05 8.6E-10 61.2 10.2 104 106-216 23-134 (141)
262 PF01739 CheR: CheR methyltran 98.1 2.8E-06 6.1E-11 71.5 3.5 101 108-211 31-173 (196)
263 PF06962 rRNA_methylase: Putat 98.1 2.4E-05 5.1E-10 61.7 8.4 76 135-213 1-92 (140)
264 cd08283 FDH_like_1 Glutathione 98.0 3.5E-05 7.6E-10 72.0 10.8 106 102-214 178-307 (386)
265 PRK10742 putative methyltransf 98.0 2.6E-05 5.7E-10 67.3 8.9 90 99-193 77-176 (250)
266 TIGR03201 dearomat_had 6-hydro 98.0 1.8E-05 4E-10 72.8 8.0 106 101-214 159-273 (349)
267 KOG2671 Putative RNA methylase 98.0 1.4E-05 3E-10 71.2 6.1 112 100-216 200-357 (421)
268 COG3897 Predicted methyltransf 98.0 3.2E-05 6.8E-10 63.8 7.7 106 100-216 71-182 (218)
269 cd08277 liver_alcohol_DH_like 98.0 0.00012 2.5E-09 67.9 12.6 108 101-215 177-288 (365)
270 cd08285 NADP_ADH NADP(H)-depen 97.9 6.2E-05 1.3E-09 69.2 9.9 106 101-214 159-267 (351)
271 KOG1269 SAM-dependent methyltr 97.9 3.1E-05 6.7E-10 71.1 7.3 104 104-212 106-214 (364)
272 TIGR03439 methyl_EasF probable 97.9 0.00014 3E-09 65.8 11.2 107 106-212 74-196 (319)
273 KOG2940 Predicted methyltransf 97.9 1.8E-05 4E-10 66.6 5.0 96 108-211 72-172 (325)
274 cd08296 CAD_like Cinnamyl alco 97.9 8.9E-05 1.9E-09 67.7 9.9 103 102-214 157-260 (333)
275 COG4798 Predicted methyltransf 97.9 4.6E-05 9.9E-10 62.7 6.9 108 100-212 40-165 (238)
276 PRK10083 putative oxidoreducta 97.8 0.00028 6E-09 64.5 12.6 108 100-214 152-260 (339)
277 TIGR01444 fkbM_fam methyltrans 97.8 7.5E-05 1.6E-09 59.4 7.8 59 111-171 1-59 (143)
278 PF03141 Methyltransf_29: Puta 97.8 6E-05 1.3E-09 70.7 7.2 94 111-216 120-222 (506)
279 cd08286 FDH_like_ADH2 formalde 97.8 0.0002 4.4E-09 65.6 10.3 106 101-214 159-267 (345)
280 cd08233 butanediol_DH_like (2R 97.7 0.00022 4.8E-09 65.5 10.0 107 101-214 165-273 (351)
281 PRK11760 putative 23S rRNA C24 97.7 0.00026 5.6E-09 63.9 9.6 87 106-206 209-296 (357)
282 PF09243 Rsm22: Mitochondrial 97.7 0.00079 1.7E-08 59.9 12.6 105 108-218 33-144 (274)
283 PF02005 TRM: N2,N2-dimethylgu 97.7 0.00016 3.4E-09 67.1 8.2 103 108-213 49-154 (377)
284 cd08231 MDR_TM0436_like Hypoth 97.7 0.00038 8.2E-09 64.3 10.6 107 102-214 170-281 (361)
285 cd05188 MDR Medium chain reduc 97.7 0.00011 2.4E-09 64.2 6.8 104 104-215 130-234 (271)
286 KOG1709 Guanidinoacetate methy 97.7 0.00044 9.6E-09 57.9 9.6 100 107-213 100-206 (271)
287 PF04989 CmcI: Cephalosporin h 97.6 0.00022 4.7E-09 60.0 7.6 120 93-214 17-148 (206)
288 COG2384 Predicted SAM-dependen 97.6 0.0019 4.2E-08 54.5 13.1 137 107-249 15-157 (226)
289 cd05278 FDH_like Formaldehyde 97.6 0.00048 1E-08 63.0 10.3 103 102-213 161-267 (347)
290 PLN02178 cinnamyl-alcohol dehy 97.6 0.00038 8.3E-09 64.8 9.6 96 107-214 177-274 (375)
291 PLN02514 cinnamyl-alcohol dehy 97.6 0.00076 1.7E-08 62.3 11.2 98 106-214 178-276 (357)
292 cd08299 alcohol_DH_class_I_II_ 97.6 0.00067 1.4E-08 63.1 10.8 107 101-214 183-293 (373)
293 cd08265 Zn_ADH3 Alcohol dehydr 97.6 0.00061 1.3E-08 63.6 10.5 106 104-214 199-308 (384)
294 cd08254 hydroxyacyl_CoA_DH 6-h 97.6 0.00022 4.7E-09 64.9 7.4 105 102-214 159-264 (338)
295 cd08278 benzyl_alcohol_DH Benz 97.5 0.00048 1E-08 63.8 9.3 106 102-214 180-286 (365)
296 cd05279 Zn_ADH1 Liver alcohol 97.5 0.0015 3.2E-08 60.6 12.5 107 101-214 176-286 (365)
297 KOG1562 Spermidine synthase [A 97.5 0.0004 8.8E-09 60.9 8.0 119 106-228 119-251 (337)
298 PLN02702 L-idonate 5-dehydroge 97.5 0.00049 1.1E-08 63.7 9.0 107 102-214 175-286 (364)
299 KOG0023 Alcohol dehydrogenase, 97.5 0.002 4.4E-08 57.3 12.1 104 100-212 173-278 (360)
300 COG1189 Predicted rRNA methyla 97.5 0.00056 1.2E-08 58.4 8.1 104 100-212 70-177 (245)
301 COG0500 SmtA SAM-dependent met 97.5 0.0027 5.9E-08 49.9 11.7 98 112-214 52-156 (257)
302 PF05971 Methyltransf_10: Prot 97.4 0.0014 3.1E-08 58.4 10.4 80 109-190 103-186 (299)
303 cd08256 Zn_ADH2 Alcohol dehydr 97.4 0.00053 1.1E-08 63.0 7.8 106 102-214 168-275 (350)
304 KOG3178 Hydroxyindole-O-methyl 97.4 0.001 2.2E-08 59.9 8.8 90 110-213 179-275 (342)
305 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00017 3.7E-09 63.0 3.6 103 107-212 55-198 (256)
306 PRK09424 pntA NAD(P) transhydr 97.3 0.0026 5.6E-08 61.2 11.9 104 105-214 161-286 (509)
307 PF07942 N2227: N2227-like pro 97.3 0.002 4.3E-08 56.7 10.2 104 108-214 56-203 (270)
308 cd08242 MDR_like Medium chain 97.3 0.0046 9.9E-08 55.9 13.1 98 100-213 147-245 (319)
309 cd08287 FDH_like_ADH3 formalde 97.3 0.0034 7.3E-08 57.4 11.6 106 102-214 162-269 (345)
310 cd08260 Zn_ADH6 Alcohol dehydr 97.2 0.0026 5.7E-08 58.2 10.3 105 102-214 159-265 (345)
311 cd08284 FDH_like_2 Glutathione 97.2 0.0046 1E-07 56.5 11.5 107 101-215 160-268 (344)
312 cd08279 Zn_ADH_class_III Class 97.2 0.003 6.5E-08 58.4 10.0 106 101-214 175-283 (363)
313 cd05285 sorbitol_DH Sorbitol d 97.1 0.0026 5.7E-08 58.2 9.3 104 101-213 155-265 (343)
314 PF11968 DUF3321: Putative met 97.1 0.0016 3.4E-08 55.0 6.9 116 110-245 53-189 (219)
315 cd08232 idonate-5-DH L-idonate 97.1 0.0064 1.4E-07 55.4 11.5 104 102-214 159-263 (339)
316 cd08261 Zn_ADH7 Alcohol dehydr 97.1 0.0062 1.4E-07 55.5 11.4 104 101-214 152-259 (337)
317 PF04672 Methyltransf_19: S-ad 97.1 0.0044 9.6E-08 54.3 9.6 137 110-247 70-233 (267)
318 KOG1253 tRNA methyltransferase 97.1 0.00076 1.6E-08 63.1 4.9 107 106-212 107-215 (525)
319 cd08264 Zn_ADH_like2 Alcohol d 97.1 0.002 4.3E-08 58.4 7.7 170 15-214 75-254 (325)
320 cd08240 6_hydroxyhexanoate_dh_ 97.0 0.005 1.1E-07 56.5 10.2 102 106-214 173-275 (350)
321 cd08282 PFDH_like Pseudomonas 97.0 0.0084 1.8E-07 55.7 11.8 106 101-213 169-285 (375)
322 cd08266 Zn_ADH_like1 Alcohol d 97.0 0.0049 1.1E-07 55.7 9.8 102 102-214 160-266 (342)
323 COG1867 TRM1 N2,N2-dimethylgua 97.0 0.0035 7.5E-08 56.9 8.1 100 109-212 53-153 (380)
324 TIGR02825 B4_12hDH leukotriene 97.0 0.0042 9.1E-08 56.4 8.9 105 101-214 131-238 (325)
325 PLN03154 putative allyl alcoho 97.0 0.0034 7.5E-08 57.8 8.4 105 102-214 152-259 (348)
326 KOG1227 Putative methyltransfe 96.9 0.00039 8.4E-09 61.0 1.8 127 67-210 163-293 (351)
327 KOG2360 Proliferation-associat 96.9 0.0029 6.3E-08 57.6 7.4 101 88-190 193-293 (413)
328 TIGR00692 tdh L-threonine 3-de 96.9 0.0066 1.4E-07 55.5 9.9 104 104-215 157-263 (340)
329 PRK09422 ethanol-active dehydr 96.9 0.007 1.5E-07 55.1 10.0 105 101-213 155-261 (338)
330 cd05284 arabinose_DH_like D-ar 96.9 0.0072 1.6E-07 55.1 10.0 101 105-214 164-267 (340)
331 PF04445 SAM_MT: Putative SAM- 96.9 0.0063 1.4E-07 52.3 8.8 86 99-189 64-159 (234)
332 cd08263 Zn_ADH10 Alcohol dehyd 96.9 0.0097 2.1E-07 55.0 10.6 104 102-214 181-288 (367)
333 KOG3201 Uncharacterized conser 96.8 0.0011 2.4E-08 53.1 3.3 129 100-231 21-160 (201)
334 cd08246 crotonyl_coA_red croto 96.8 0.012 2.5E-07 55.1 10.5 102 104-213 189-315 (393)
335 PRK13771 putative alcohol dehy 96.8 0.013 2.7E-07 53.3 10.5 99 102-214 156-256 (334)
336 cd08245 CAD Cinnamyl alcohol d 96.7 0.017 3.6E-07 52.4 11.0 101 102-214 156-257 (330)
337 KOG1099 SAM-dependent methyltr 96.7 0.0047 1E-07 52.4 6.5 107 110-228 43-178 (294)
338 KOG1331 Predicted methyltransf 96.7 0.0013 2.9E-08 57.5 3.2 97 107-218 44-148 (293)
339 cd08238 sorbose_phosphate_red 96.7 0.0046 1E-07 58.3 7.2 106 103-212 170-287 (410)
340 cd08262 Zn_ADH8 Alcohol dehydr 96.7 0.019 4.1E-07 52.3 11.1 105 101-214 154-265 (341)
341 PRK01747 mnmC bifunctional tRN 96.7 0.016 3.5E-07 58.1 11.4 118 108-231 57-221 (662)
342 TIGR01202 bchC 2-desacetyl-2-h 96.7 0.0079 1.7E-07 54.4 8.4 89 107-214 143-232 (308)
343 cd08298 CAD2 Cinnamyl alcohol 96.7 0.027 5.9E-07 51.0 12.0 97 101-214 160-257 (329)
344 cd05281 TDH Threonine dehydrog 96.7 0.021 4.5E-07 52.2 10.9 102 104-214 159-263 (341)
345 PF07091 FmrO: Ribosomal RNA m 96.6 0.0084 1.8E-07 51.9 7.5 75 106-187 103-177 (251)
346 KOG4058 Uncharacterized conser 96.6 0.0087 1.9E-07 47.3 6.9 108 98-211 62-170 (199)
347 KOG0025 Zn2+-binding dehydroge 96.6 0.017 3.6E-07 50.9 9.0 142 98-246 150-295 (354)
348 cd05283 CAD1 Cinnamyl alcohol 96.6 0.071 1.5E-06 48.6 13.9 102 101-214 162-264 (337)
349 PF00107 ADH_zinc_N: Zinc-bind 96.6 0.0017 3.8E-08 50.5 2.8 91 118-216 1-92 (130)
350 PHA01634 hypothetical protein 96.6 0.016 3.4E-07 44.7 7.7 78 104-191 25-102 (156)
351 cd08294 leukotriene_B4_DH_like 96.6 0.0099 2.1E-07 53.8 8.1 103 102-213 137-241 (329)
352 cd00401 AdoHcyase S-adenosyl-L 96.6 0.024 5.1E-07 53.3 10.7 98 99-215 191-291 (413)
353 cd08295 double_bond_reductase_ 96.5 0.013 2.7E-07 53.6 8.6 105 102-214 145-252 (338)
354 COG0604 Qor NADPH:quinone redu 96.5 0.012 2.5E-07 53.8 8.2 105 102-215 136-243 (326)
355 KOG1501 Arginine N-methyltrans 96.5 0.0058 1.2E-07 56.5 6.0 58 111-170 69-126 (636)
356 cd08293 PTGR2 Prostaglandin re 96.5 0.011 2.5E-07 53.9 8.2 105 102-213 146-254 (345)
357 PF07279 DUF1442: Protein of u 96.4 0.075 1.6E-06 44.9 11.6 127 80-210 13-145 (218)
358 KOG1197 Predicted quinone oxid 96.3 0.026 5.6E-07 48.9 8.6 103 101-213 139-245 (336)
359 KOG2352 Predicted spermine/spe 96.3 0.023 5E-07 53.5 8.9 99 107-212 46-160 (482)
360 cd08235 iditol_2_DH_like L-idi 96.3 0.019 4E-07 52.4 8.3 105 100-214 157-266 (343)
361 PRK05396 tdh L-threonine 3-deh 96.3 0.032 6.9E-07 50.9 9.8 101 106-214 161-264 (341)
362 COG1568 Predicted methyltransf 96.2 0.024 5.1E-07 49.6 7.9 100 108-211 152-258 (354)
363 TIGR00561 pntA NAD(P) transhyd 96.1 0.036 7.8E-07 53.3 9.2 94 107-211 162-282 (511)
364 cd00315 Cyt_C5_DNA_methylase C 96.1 0.081 1.8E-06 47.1 11.0 72 111-192 2-73 (275)
365 cd08258 Zn_ADH4 Alcohol dehydr 96.0 0.054 1.2E-06 48.8 9.7 105 100-215 156-266 (306)
366 TIGR01751 crot-CoA-red crotony 95.9 0.16 3.5E-06 47.6 12.9 103 104-214 185-311 (398)
367 cd08274 MDR9 Medium chain dehy 95.9 0.037 8E-07 50.5 8.5 102 101-214 170-274 (350)
368 TIGR00497 hsdM type I restrict 95.9 0.11 2.4E-06 50.3 12.0 123 90-214 196-356 (501)
369 KOG3987 Uncharacterized conser 95.9 0.0037 8E-08 52.2 1.5 87 109-211 113-205 (288)
370 PRK11524 putative methyltransf 95.9 0.024 5.3E-07 50.7 6.8 46 107-155 207-252 (284)
371 KOG0822 Protein kinase inhibit 95.9 0.03 6.4E-07 53.2 7.3 97 110-210 369-475 (649)
372 cd08297 CAD3 Cinnamyl alcohol 95.8 0.19 4.1E-06 45.7 12.6 105 102-214 159-266 (341)
373 cd08259 Zn_ADH5 Alcohol dehydr 95.7 0.061 1.3E-06 48.5 8.8 100 102-214 156-257 (332)
374 KOG1098 Putative SAM-dependent 95.7 0.0082 1.8E-07 57.7 3.0 91 106-211 42-156 (780)
375 PF01555 N6_N4_Mtase: DNA meth 95.6 0.022 4.8E-07 48.5 5.3 48 100-151 184-231 (231)
376 PRK13699 putative methylase; P 95.6 0.045 9.8E-07 47.2 7.0 48 106-156 161-208 (227)
377 KOG2352 Predicted spermine/spe 95.5 0.023 5.1E-07 53.5 5.2 103 108-212 295-415 (482)
378 COG5459 Predicted rRNA methyla 95.4 0.034 7.3E-07 50.2 5.8 117 109-228 114-244 (484)
379 PF10354 DUF2431: Domain of un 95.3 0.14 3.1E-06 41.9 8.6 99 113-212 1-124 (166)
380 cd08255 2-desacetyl-2-hydroxye 95.2 0.22 4.7E-06 43.8 10.5 101 101-214 90-191 (277)
381 PF11599 AviRa: RRNA methyltra 95.2 0.049 1.1E-06 46.0 5.6 130 107-246 50-240 (246)
382 KOG2078 tRNA modification enzy 95.1 0.015 3.2E-07 53.7 2.7 62 106-170 247-309 (495)
383 KOG2798 Putative trehalase [Ca 94.9 0.11 2.4E-06 46.4 7.4 102 109-214 151-297 (369)
384 PF05711 TylF: Macrocin-O-meth 94.9 0.11 2.5E-06 45.2 7.5 119 108-227 74-226 (248)
385 COG2130 Putative NADP-dependen 94.8 0.16 3.5E-06 45.2 8.0 104 100-211 142-247 (340)
386 cd08291 ETR_like_1 2-enoyl thi 94.7 0.12 2.6E-06 46.8 7.5 102 103-214 138-243 (324)
387 cd08234 threonine_DH_like L-th 94.5 0.17 3.6E-06 45.9 7.8 104 102-214 153-258 (334)
388 TIGR00936 ahcY adenosylhomocys 94.4 0.32 7E-06 45.6 9.7 97 100-215 185-284 (406)
389 PF02254 TrkA_N: TrkA-N domain 94.2 0.19 4E-06 38.1 6.6 99 112-220 1-103 (116)
390 PLN02494 adenosylhomocysteinas 94.2 0.24 5.2E-06 47.1 8.4 98 99-214 243-342 (477)
391 cd08236 sugar_DH NAD(P)-depend 94.2 0.2 4.4E-06 45.6 7.8 107 100-214 151-259 (343)
392 PRK05476 S-adenosyl-L-homocyst 94.1 0.37 8.1E-06 45.5 9.4 93 105-216 207-302 (425)
393 cd05286 QOR2 Quinone oxidoredu 93.9 0.3 6.5E-06 43.3 8.2 102 102-213 130-235 (320)
394 cd05288 PGDH Prostaglandin deh 93.8 0.28 6.1E-06 44.2 8.0 104 102-213 139-244 (329)
395 KOG3924 Putative protein methy 93.8 0.22 4.8E-06 45.8 7.0 120 94-214 178-309 (419)
396 KOG2793 Putative N2,N2-dimethy 93.6 1.5 3.2E-05 38.3 11.6 108 102-212 79-198 (248)
397 cd08292 ETR_like_2 2-enoyl thi 93.6 0.27 5.9E-06 44.2 7.5 106 100-214 131-239 (324)
398 PRK07340 ornithine cyclodeamin 93.4 0.32 7E-06 43.9 7.5 109 100-221 116-225 (304)
399 cd08269 Zn_ADH9 Alcohol dehydr 93.4 0.36 7.7E-06 43.1 7.8 106 101-214 122-230 (312)
400 cd08243 quinone_oxidoreductase 93.3 0.59 1.3E-05 41.7 9.2 101 103-214 137-239 (320)
401 cd08244 MDR_enoyl_red Possible 93.3 0.44 9.4E-06 42.8 8.4 106 100-214 134-242 (324)
402 PRK13699 putative methylase; P 93.3 0.24 5.3E-06 42.7 6.2 68 163-234 3-93 (227)
403 PRK11524 putative methyltransf 93.2 0.24 5.3E-06 44.2 6.4 66 162-231 9-97 (284)
404 cd05289 MDR_like_2 alcohol deh 93.2 1 2.2E-05 39.8 10.4 98 104-214 140-239 (309)
405 PTZ00075 Adenosylhomocysteinas 93.1 0.83 1.8E-05 43.6 10.0 90 107-215 252-343 (476)
406 PTZ00357 methyltransferase; Pr 92.7 0.87 1.9E-05 45.1 9.5 98 111-208 703-830 (1072)
407 cd08250 Mgc45594_like Mgc45594 92.6 0.59 1.3E-05 42.2 8.2 104 102-214 133-238 (329)
408 TIGR02371 ala_DH_arch alanine 92.6 0.56 1.2E-05 42.8 8.0 113 100-223 119-232 (325)
409 cd08241 QOR1 Quinone oxidoredu 92.6 0.64 1.4E-05 41.3 8.3 103 103-214 134-239 (323)
410 PRK06141 ornithine cyclodeamin 92.5 0.58 1.3E-05 42.5 7.9 116 100-226 116-232 (314)
411 cd08276 MDR7 Medium chain dehy 92.5 0.62 1.3E-05 41.9 8.2 104 102-214 154-260 (336)
412 PRK08306 dipicolinate synthase 92.5 0.92 2E-05 40.8 9.1 88 108-212 151-240 (296)
413 PRK10754 quinone oxidoreductas 92.4 0.52 1.1E-05 42.5 7.6 103 103-214 135-240 (327)
414 PTZ00354 alcohol dehydrogenase 92.4 0.62 1.3E-05 41.9 8.1 100 103-213 135-240 (334)
415 cd08290 ETR 2-enoyl thioester 92.3 0.47 1E-05 43.1 7.2 102 103-213 141-251 (341)
416 smart00829 PKS_ER Enoylreducta 92.1 0.94 2E-05 39.4 8.7 102 102-214 98-206 (288)
417 COG3129 Predicted SAM-dependen 92.0 0.51 1.1E-05 40.4 6.3 82 108-190 78-162 (292)
418 cd08289 MDR_yhfp_like Yhfp put 92.0 0.85 1.8E-05 41.0 8.4 97 108-214 146-244 (326)
419 PRK08618 ornithine cyclodeamin 92.0 1 2.2E-05 41.1 8.8 104 100-216 118-224 (325)
420 cd05195 enoyl_red enoyl reduct 91.9 0.74 1.6E-05 40.1 7.7 104 102-214 102-210 (293)
421 COG4301 Uncharacterized conser 91.8 2.5 5.4E-05 36.8 10.1 109 103-212 73-192 (321)
422 TIGR02823 oxido_YhdH putative 91.7 1.2 2.6E-05 40.0 9.0 99 105-214 141-242 (323)
423 KOG1198 Zinc-binding oxidoredu 91.7 0.36 7.8E-06 44.4 5.6 80 105-191 154-235 (347)
424 COG0287 TyrA Prephenate dehydr 91.7 1.6 3.5E-05 38.9 9.5 105 110-226 4-111 (279)
425 PF02558 ApbA: Ketopantoate re 91.6 0.48 1E-05 37.7 5.7 104 112-226 1-114 (151)
426 PF10237 N6-adenineMlase: Prob 91.6 2.3 4.9E-05 34.6 9.5 94 107-213 24-123 (162)
427 cd08252 AL_MDR Arginate lyase 91.5 0.99 2.1E-05 40.8 8.4 105 102-214 138-249 (336)
428 PRK06940 short chain dehydroge 91.5 2.2 4.7E-05 37.7 10.2 99 110-212 3-124 (275)
429 PRK07502 cyclohexadienyl dehyd 91.5 2.3 5E-05 38.3 10.6 92 110-214 7-101 (307)
430 COG2961 ComJ Protein involved 91.4 4.5 9.7E-05 35.2 11.4 124 106-238 87-223 (279)
431 KOG0821 Predicted ribosomal RN 91.3 0.42 9.2E-06 40.6 5.1 69 99-171 41-109 (326)
432 cd08270 MDR4 Medium chain dehy 91.3 3.9 8.4E-05 36.2 11.8 96 102-214 126-223 (305)
433 cd08267 MDR1 Medium chain dehy 91.3 2.6 5.6E-05 37.5 10.7 100 105-214 140-241 (319)
434 PRK10669 putative cation:proto 91.2 1.6 3.5E-05 42.9 10.0 98 110-217 418-519 (558)
435 PF00145 DNA_methylase: C-5 cy 91.2 0.25 5.4E-06 44.6 4.0 107 111-228 2-132 (335)
436 PF07757 AdoMet_MTase: Predict 91.1 0.17 3.6E-06 38.0 2.2 33 108-143 58-90 (112)
437 PRK05786 fabG 3-ketoacyl-(acyl 91.0 3.1 6.7E-05 35.4 10.5 103 108-214 4-136 (238)
438 PF05206 TRM13: Methyltransfer 90.9 3.4 7.4E-05 36.4 10.6 106 105-211 15-138 (259)
439 cd08249 enoyl_reductase_like e 90.8 0.51 1.1E-05 43.0 5.7 100 107-215 153-256 (339)
440 PRK06823 ornithine cyclodeamin 90.8 1.3 2.7E-05 40.3 8.1 112 100-223 119-232 (315)
441 TIGR00518 alaDH alanine dehydr 90.6 0.74 1.6E-05 42.8 6.6 95 108-212 166-266 (370)
442 PF02636 Methyltransf_28: Puta 90.6 0.49 1.1E-05 41.4 5.2 47 109-155 19-72 (252)
443 PRK09260 3-hydroxybutyryl-CoA 90.5 1.1 2.3E-05 40.1 7.4 96 110-215 2-119 (288)
444 PRK03562 glutathione-regulated 90.5 2.6 5.6E-05 42.1 10.6 94 109-212 400-497 (621)
445 PF02737 3HCDH_N: 3-hydroxyacy 90.4 2.3 5E-05 35.2 8.8 105 111-226 1-126 (180)
446 cd05282 ETR_like 2-enoyl thioe 90.4 1.3 2.8E-05 39.6 7.9 102 103-213 133-237 (323)
447 PF05050 Methyltransf_21: Meth 90.1 0.99 2.2E-05 36.1 6.3 53 114-166 1-58 (167)
448 PRK15001 SAM-dependent 23S rib 90.1 2.3 5E-05 39.6 9.3 102 99-211 34-140 (378)
449 cd08273 MDR8 Medium chain dehy 90.1 3.3 7.1E-05 37.2 10.3 100 102-214 133-234 (331)
450 PF03141 Methyltransf_29: Puta 90.0 0.63 1.4E-05 44.3 5.5 102 110-227 367-480 (506)
451 PF03721 UDPG_MGDP_dh_N: UDP-g 90.0 0.96 2.1E-05 37.7 6.1 96 110-214 1-121 (185)
452 PF05430 Methyltransf_30: S-ad 90.0 0.21 4.6E-06 38.7 2.0 64 162-231 33-105 (124)
453 cd08248 RTN4I1 Human Reticulon 89.9 1.8 3.9E-05 39.3 8.5 94 108-213 162-257 (350)
454 PRK08324 short chain dehydroge 89.8 2.8 6.1E-05 42.3 10.5 103 108-214 421-558 (681)
455 TIGR02356 adenyl_thiF thiazole 89.8 1.7 3.7E-05 36.7 7.6 34 108-142 20-54 (202)
456 KOG2782 Putative SAM dependent 89.7 0.31 6.7E-06 41.3 2.9 94 94-192 29-129 (303)
457 PRK07589 ornithine cyclodeamin 89.6 1.5 3.3E-05 40.3 7.7 111 100-222 120-234 (346)
458 PRK05708 2-dehydropantoate 2-r 89.6 2.4 5.1E-05 38.3 8.9 106 110-225 3-116 (305)
459 COG1565 Uncharacterized conser 89.5 1.8 3.8E-05 39.7 7.8 55 102-156 71-132 (370)
460 TIGR02817 adh_fam_1 zinc-bindi 89.5 1.9 4.1E-05 38.9 8.3 104 102-213 137-247 (336)
461 KOG2651 rRNA adenine N-6-methy 89.4 0.92 2E-05 41.7 5.9 49 101-151 146-194 (476)
462 COG0686 Ald Alanine dehydrogen 89.3 1.5 3.2E-05 39.4 6.9 93 109-211 168-266 (371)
463 cd01065 NAD_bind_Shikimate_DH 89.2 4.4 9.6E-05 32.1 9.4 109 107-228 17-130 (155)
464 PRK08293 3-hydroxybutyryl-CoA 88.9 3.3 7.2E-05 36.9 9.2 96 110-214 4-121 (287)
465 PF01408 GFO_IDH_MocA: Oxidore 88.8 1.8 3.9E-05 32.7 6.5 105 111-228 2-111 (120)
466 cd01487 E1_ThiF_like E1_ThiF_l 88.8 3.5 7.5E-05 33.9 8.6 80 111-192 1-99 (174)
467 cd08268 MDR2 Medium chain dehy 88.7 1.9 4.1E-05 38.4 7.7 104 103-214 139-244 (328)
468 cd05292 LDH_2 A subgroup of L- 88.7 9 0.0002 34.6 11.9 102 111-220 2-123 (308)
469 PRK03659 glutathione-regulated 88.7 4.1 8.9E-05 40.5 10.5 97 110-216 401-501 (601)
470 PRK07530 3-hydroxybutyryl-CoA 88.7 4.9 0.00011 35.9 10.2 105 110-226 5-131 (292)
471 cd05280 MDR_yhdh_yhfp Yhdh and 88.6 2.5 5.5E-05 37.8 8.4 95 109-214 147-244 (325)
472 PRK06035 3-hydroxyacyl-CoA deh 88.5 3.8 8.2E-05 36.6 9.4 105 110-226 4-133 (291)
473 TIGR00675 dcm DNA-methyltransf 88.5 0.75 1.6E-05 41.8 4.8 68 112-190 1-68 (315)
474 KOG2912 Predicted DNA methylas 88.5 0.82 1.8E-05 41.0 4.8 77 113-190 107-187 (419)
475 cd08251 polyketide_synthase po 88.4 2.6 5.6E-05 37.0 8.2 102 101-213 113-219 (303)
476 PRK07417 arogenate dehydrogena 88.3 4.3 9.3E-05 36.0 9.5 88 111-215 2-93 (279)
477 COG3510 CmcI Cephalosporin hyd 88.2 1.7 3.8E-05 36.2 6.2 119 92-216 53-183 (237)
478 PRK07576 short chain dehydroge 88.1 6.4 0.00014 34.3 10.5 79 108-189 8-94 (264)
479 PRK05854 short chain dehydroge 87.9 6.1 0.00013 35.6 10.4 81 108-189 13-101 (313)
480 PRK12475 thiamine/molybdopteri 87.9 2.2 4.8E-05 39.1 7.5 80 108-189 23-124 (338)
481 cd05276 p53_inducible_oxidored 87.9 2.5 5.5E-05 37.3 7.9 104 102-213 133-238 (323)
482 PRK05808 3-hydroxybutyryl-CoA 87.8 7 0.00015 34.7 10.6 105 110-226 4-130 (282)
483 cd08253 zeta_crystallin Zeta-c 87.8 3 6.6E-05 36.9 8.4 101 103-214 139-244 (325)
484 PRK08339 short chain dehydroge 87.8 7.8 0.00017 33.8 10.8 80 108-189 7-93 (263)
485 PRK07109 short chain dehydroge 87.7 7.2 0.00016 35.6 10.9 79 108-189 7-93 (334)
486 PF02826 2-Hacid_dh_C: D-isome 87.6 1.2 2.6E-05 36.8 5.1 106 107-230 34-145 (178)
487 PF11899 DUF3419: Protein of u 87.6 1.8 3.9E-05 40.4 6.7 52 99-153 26-77 (380)
488 cd05293 LDH_1 A subgroup of L- 87.6 13 0.00028 33.7 12.2 105 108-220 2-127 (312)
489 PRK15057 UDP-glucose 6-dehydro 87.5 4.8 0.00011 37.7 9.7 38 111-151 2-40 (388)
490 PRK07806 short chain dehydroge 87.5 6.9 0.00015 33.5 10.1 104 108-214 5-135 (248)
491 PRK11064 wecC UDP-N-acetyl-D-m 87.3 11 0.00025 35.5 12.1 105 110-228 4-135 (415)
492 PLN03209 translocon at the inn 87.3 4.3 9.3E-05 39.9 9.4 87 102-190 73-168 (576)
493 KOG1196 Predicted NAD-dependen 87.1 3.1 6.7E-05 37.2 7.5 105 100-212 145-252 (343)
494 PRK00066 ldh L-lactate dehydro 87.0 12 0.00025 34.0 11.6 108 107-221 4-130 (315)
495 PRK05867 short chain dehydroge 86.8 7.3 0.00016 33.6 10.0 79 108-189 8-94 (253)
496 PF12242 Eno-Rase_NADH_b: NAD( 86.8 2.5 5.3E-05 29.6 5.4 43 100-142 30-73 (78)
497 PF02153 PDH: Prephenate dehyd 86.8 2.8 6.1E-05 36.8 7.3 88 124-226 3-92 (258)
498 PRK06522 2-dehydropantoate 2-r 86.8 8.6 0.00019 34.2 10.7 96 111-216 2-103 (304)
499 COG1748 LYS9 Saccharopine dehy 86.7 1.6 3.4E-05 40.7 5.9 74 110-190 2-77 (389)
500 COG1893 ApbA Ketopantoate redu 86.7 9.4 0.0002 34.5 10.8 106 110-226 1-114 (307)
No 1
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-54 Score=363.81 Aligned_cols=253 Identities=39% Similarity=0.687 Sum_probs=242.4
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeec
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYI 94 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 94 (311)
+||+||+|+|...+++.+.+.+.+++.++|+.|.+++++++|+++|..+.++.|..+++++|++.+|...+++++|++||
T Consensus 1 ~~~~gd~vlL~~~~~~~~lv~~~~~~~~~t~~G~i~~~~vigk~~G~~i~s~~G~~f~vl~p~~~d~~~~~~R~tQiIyP 80 (256)
T COG2519 1 PFKEGDPVLLTDERGRRYLVRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLGVKFYVLKPTPEDYLLSMKRRTQIIYP 80 (256)
T ss_pred CCCCCCeEEEEecCCcEEEEeccCCcccccceeeechhhhcCCCCCceEEeeCCceEEEeCCCHHHHHHhCcCCCceecC
Confidence 58999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
+|+++|+..+++.||++|||.|+|||.++++|++.+++.++|+++|+.+++++.|++|++.+++.+++++..+|+.+ ..
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~-~~ 159 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE-GI 159 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999985 33
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEeeeeccCC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQWRADCG 253 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~~~~~~~ 253 (311)
.+ ..||+||+|+|+||++++++.+.|+|||.+++|+|+.+|+.++.+.|++ +|.+++.+|.+.|+|++...+
T Consensus 160 ~~---~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~---- 232 (256)
T COG2519 160 DE---EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEA---- 232 (256)
T ss_pred cc---cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccc----
Confidence 33 5899999999999999999999999999999999999999999999999 799999999999999999876
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEeecc
Q 021550 254 QGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARLKCL 310 (311)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~~~~ 310 (311)
+||.++|.+|||||+|+|+.+.
T Consensus 233 -----------------------------------~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 233 -----------------------------------TRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred -----------------------------------cCcccccccceeEEEEEeeccC
Confidence 6999999999999999999763
No 2
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-52 Score=349.00 Aligned_cols=301 Identities=52% Similarity=0.856 Sum_probs=257.6
Q ss_pred CCCCCCcccCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEEEEecCCHHHHhh
Q 021550 4 TDPTKKISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFVYLLAPTPELWTL 83 (311)
Q Consensus 4 ~~~~~~~~~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~~~~~p~~~~~~~ 83 (311)
.+|..++++...|++||.|+++..+|.++++++..++.+++++|.++|.+|||++||..+.+..|+++|++.|++++|..
T Consensus 1 ~s~~~f~syk~~ie~GDlvi~~~~~~~m~p~~v~r~~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL~PTpELWTl 80 (314)
T KOG2915|consen 1 VSPMSFTSYKRRIEEGDLVIAYVGRGEMKPVKVFREGTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLLQPTPELWTL 80 (314)
T ss_pred CCCccccChhhhcccCCEEEEEEccCceEEEEEeccceeeccccccchhheecCCccceeeecCCcEEEEecCChHHhhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 84 VLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
.+++++||+|+.|+++|++++++.||++|||.|+|+|.++.++++.++|.++++.+|+.+.+.+.|.+.++++++.++++
T Consensus 81 ~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 81 ALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred hccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCc-EEEEecCCHHHHHHHHHHHhh-cCceeeEEEeec-
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDG-ILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILL- 240 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG-~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~- 240 (311)
+.+.|++..+|... ...+|+||+|+|.||.++..+.+.||.+| +++.|+||++|+++.++.|++ +|.+++++|.+.
T Consensus 161 ~~hrDVc~~GF~~k-s~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~~ 239 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIK-SLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLLV 239 (314)
T ss_pred EEEeecccCCcccc-ccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeehh
Confidence 99999998776542 26899999999999999999999999765 999999999999999999999 899999999999
Q ss_pred eeeEEeeeeccCCCCCCCCCCCcccc--ccccccccCCCCCC---C-CCCcceeecCCCCccccceeeEeEEee
Q 021550 241 RTYEIRQWRADCGQGTGGGSAGSIRH--KRKQHLIEGSGEKE---N-PNNSTVMARPNGEARGHTGYLTFARLK 308 (311)
Q Consensus 241 r~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~-~~~~~~~~~p~~~~~~htgyl~~a~~~ 308 (311)
|.+.|..-+++.-.-.+. +-+..+ -+++++.+++.++. + +..-....||. +.+||||||+||++.
T Consensus 240 qk~~V~~~~~~~~~l~~v--k~~~~~~~~~k~~~~~~d~~e~~~ss~~~~~~~~~~~~-~~~gHTgyLtfat~~ 310 (314)
T KOG2915|consen 240 QKNGVKTVKLALERLEDV--KLDKQEEIERKGRNFDSDGVEQSNSSFPSSFVTGSRPK-EQPGHTGYLTFATKL 310 (314)
T ss_pred hhhceeeeccchhhhhhh--cccchhhhhhhcccccccccccccccccccccccCCcc-ccCCcceEEEEeecc
Confidence 778777655422221111 011000 02333333333322 2 22333345555 779999999999984
No 3
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=100.00 E-value=8.3e-47 Score=325.45 Aligned_cols=239 Identities=52% Similarity=0.875 Sum_probs=162.1
Q ss_pred cEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 021550 69 GFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS 148 (311)
Q Consensus 69 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~ 148 (311)
+++|+++|++++|...+++++|++||+|+++|+.++++.||++|||.|+|+|.++.+|++.++|.|+|+++|+++++++.
T Consensus 1 g~v~vl~Pt~e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~ 80 (247)
T PF08704_consen 1 GFVYVLRPTPELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK 80 (247)
T ss_dssp ---------HHHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH
T ss_pred CCccccchhHHHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcc-cCCcEEEEecCCHHHHHHHHHHHh
Q 021550 149 AREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKML-KQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 149 a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~L-kpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
|++|++.+|+.+++.+.+.|+...++.+.....+|+||+|+|+||.++..+.+.| ++||++++|+||.+|+.++++.|+
T Consensus 81 A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 81 ARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp HHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 9999999999888999999998766744333679999999999999999999999 999999999999999999999999
Q ss_pred h-cCceeeEEEeeceeeEEeeeeccCCCCCCCCCCCc-----cccccccccccCCC-CCCCCCCcceeecCCCCccccce
Q 021550 228 L-NFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGS-----IRHKRKQHLIEGSG-EKENPNNSTVMARPNGEARGHTG 300 (311)
Q Consensus 228 ~-~f~~~~~~e~~~r~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~htg 300 (311)
+ +|.+++++|.+.|+|++.+.+++..+......... ....+++...+... .......+.+..+|..+|+||||
T Consensus 161 ~~gf~~i~~~Evl~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~e~kgHTg 240 (247)
T PF08704_consen 161 EHGFTDIETVEVLLREWEVRPRRLRPPDEGQKRPKDNKERREEGRERRKNEQEQKSEEQSSNESKKVVARPVPEMKGHTG 240 (247)
T ss_dssp HTTEEEEEEEEEEEEEEEEETCG--B-SEE--------------------------------------EEE-SS------
T ss_pred HCCCeeeEEEEEEeeEEEEEecccCCccccccccCcccccchhhhhhhhccccccccccccccccccccCCCcccCCcce
Confidence 9 89999999999999999999987666432111100 00111111111111 11222356678999999999999
Q ss_pred eeEeEEe
Q 021550 301 YLTFARL 307 (311)
Q Consensus 301 yl~~a~~ 307 (311)
|||||+|
T Consensus 241 YLTFA~~ 247 (247)
T PF08704_consen 241 YLTFATK 247 (247)
T ss_dssp EEE----
T ss_pred eeecccC
Confidence 9999986
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.77 E-value=8e-18 Score=144.28 Aligned_cols=128 Identities=28% Similarity=0.407 Sum_probs=109.1
Q ss_pred CHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 77 TPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
.++.....++.+.+..+.+. ++..+.+.+|.+|||+|||||-++..+++..+ .++|+++|+|+.|++.|+++....
T Consensus 23 ~YD~~n~~~S~g~~~~Wr~~---~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 23 KYDLMNDLMSFGLHRLWRRA---LISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHhhcccccCcchHHHHHH---HHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhcc
Confidence 33444444455555555554 56677777999999999999999999999986 899999999999999999999988
Q ss_pred CCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 157 GVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 157 g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+..+ ++++++|++..+|++ .+||+|.+ +.++...+|+++.|+|||||++++.
T Consensus 99 ~~~~-i~fv~~dAe~LPf~D---~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 99 GVQN-VEFVVGDAENLPFPD---NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred Cccc-eEEEEechhhCCCCC---CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 8887 999999999999998 89999975 6789999999999999999998875
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.74 E-value=1.2e-17 Score=144.34 Aligned_cols=131 Identities=28% Similarity=0.396 Sum_probs=85.3
Q ss_pred cCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 021550 75 APTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE 154 (311)
Q Consensus 75 ~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~ 154 (311)
.+.++.....+..+....+.. .+++.+...+|.+|||+|||+|.++..+++.+++.++|+++|+|++|++.|++++.
T Consensus 17 a~~YD~~n~~ls~g~~~~wr~---~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~ 93 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRWRR---KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK 93 (233)
T ss_dssp --------------------S---HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH
T ss_pred HHHhCCCccccCCcHHHHHHH---HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH
Confidence 344443333344444444444 36667788999999999999999999999998888999999999999999999998
Q ss_pred hcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 155 RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 155 ~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..+ ++++++|+++.++++ ++||+|++ +.+++..+++++.++|||||.+++.
T Consensus 94 ~~~~~~-i~~v~~da~~lp~~d---~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 94 REGLQN-IEFVQGDAEDLPFPD---NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HTT--S-EEEEE-BTTB--S-T---T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhCCCC-eeEEEcCHHHhcCCC---CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 887765 999999999888887 89999985 6788899999999999999999875
No 6
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.73 E-value=2.5e-16 Score=133.50 Aligned_cols=141 Identities=22% Similarity=0.310 Sum_probs=116.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+..+++.++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++++..+++.+++.+..+|+.+ .++. .
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~-~l~~-~ 108 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE-ILFT-I 108 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh-hHhh-c
Confidence 4567889999999999999999999999988766789999999999999999999998865558999888863 2221 1
Q ss_pred CCCccEEEecC--CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeecee
Q 021550 179 SGLADSIFLDL--PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRT 242 (311)
Q Consensus 179 ~~~~D~V~~d~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~ 242 (311)
.+.||+||++. .....+++.+.+.|+|||.+++.....+++.++...+++ +| +.+.++...+.
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~ 174 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAK 174 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhh
Confidence 15799999854 356789999999999999999888889999999999977 77 67777665543
No 7
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.72 E-value=7.3e-16 Score=129.45 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=118.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++++...++.+ +++..+|+. ..++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~-~~~~- 95 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAP-IELP- 95 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCch-hhcC-
Confidence 3446678888899999999999999999999874 67899999999999999999998888765 899988874 3333
Q ss_pred cCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 177 EFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 177 ~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|+++.. ....++..+.+.|+|||.+++.....++..+....+++ +|..++..+.....|...
T Consensus 96 ---~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 165 (187)
T PRK08287 96 ---GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPL 165 (187)
T ss_pred ---cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEc
Confidence 57999998643 45568899999999999998876667777888888887 798888888888888765
No 8
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=1.6e-15 Score=123.68 Aligned_cols=134 Identities=23% Similarity=0.277 Sum_probs=115.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..-+..+..+.++||++++|+|||+|..++.++ +.+|.++||++|.++++++..++|++++++++ +.++.+|+. .
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap-~ 95 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAP-E 95 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccch-H
Confidence 34444567889999999999999999999999999 66899999999999999999999999999776 999999997 4
Q ss_pred CCCCcCCCCccEEEecCC-ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 173 GFPDEFSGLADSIFLDLP-QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
.++.. ..+|.||+.-. .-..+++.+...|+|||++|+-..+.+......+++++ ++.
T Consensus 96 ~L~~~--~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 96 ALPDL--PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred hhcCC--CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 44442 36999998655 44568999999999999999999999999999999998 665
No 9
>PRK04266 fibrillarin; Provisional
Probab=99.70 E-value=2e-15 Score=129.87 Aligned_cols=162 Identities=20% Similarity=0.221 Sum_probs=115.5
Q ss_pred CCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHH---hcCCCCCCEEEEEcccccHHHHHHHHHhCCCc
Q 021550 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (311)
Q Consensus 58 ~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~ 134 (311)
.||+.+....+..++++.|. .++..+.++. .+++.+|.+|||+|||+|.++..+++.++ .+
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~---------------r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g 97 (226)
T PRK04266 34 VYGERLIKWEGVEYREWNPR---------------RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EG 97 (226)
T ss_pred CCCceEEecCCcEEEEECCC---------------ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CC
Confidence 45666666666667777662 1344444444 58899999999999999999999999974 68
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEE
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~ 211 (311)
+|+++|++++|++.+.+++... .+ +.++.+|+..........+.||+|+++.++++. ++.++.++|||||.+++
T Consensus 98 ~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 98 VVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred eEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9999999999999887776543 34 888899986311000011569999999888764 48899999999999998
Q ss_pred e------cCCH---HHHHHHHHHHhh-cCceeeEEEe
Q 021550 212 F------SPCI---EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 212 ~------~~~~---~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
. .... .......+.+.+ +|..++..+.
T Consensus 175 ~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 175 AIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred EEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3 2211 222334566666 7887776664
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=2.5e-15 Score=130.31 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=96.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+.+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.|++++...+..+ +++..+|+....+++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~-- 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPFDD-- 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCCCCC--
Confidence 47778888999999999999999999999988777899999999999999999988777754 999999997655555
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++..++.++.++|+|||.+++..+
T Consensus 113 -~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 113 -NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 78999986 356777899999999999999987643
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=6.6e-16 Score=118.48 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=84.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~~~~~D~V~ 186 (311)
|+.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...+..++++++++|+ ...... +.||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL----EPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS----SCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC----CCCCEEE
Confidence 68899999999999999999954 57999999999999999999997777777899999999 322232 5799999
Q ss_pred ecC-C--------ChhhHHHHHHhcccCCcEEEEe
Q 021550 187 LDL-P--------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~-~--------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. . ....+++.+.+.|+|||++++-
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 876 2 1235699999999999999864
No 12
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-15 Score=127.59 Aligned_cols=122 Identities=33% Similarity=0.380 Sum_probs=103.9
Q ss_pred hcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 85 LSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
+..+..+..|...+.+++++.+.++++|||||||+|+.++.+++.. ++|+++|+.++..+.|++|+...|+.| +.+
T Consensus 49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v 124 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTV 124 (209)
T ss_pred CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEE
Confidence 3456667788899999999999999999999999999999999995 599999999999999999999999988 999
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.++|.. .+|++. ..||.|++....+. .=+.+.+.|++||++++-.-
T Consensus 125 ~~gDG~-~G~~~~--aPyD~I~Vtaaa~~-vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 125 RHGDGS-KGWPEE--APYDRIIVTAAAPE-VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EECCcc-cCCCCC--CCcCEEEEeeccCC-CCHHHHHhcccCCEEEEEEc
Confidence 999998 678764 68999997544321 22457788999999997543
No 13
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=2.4e-15 Score=128.72 Aligned_cols=121 Identities=26% Similarity=0.270 Sum_probs=101.3
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+..+..|...+.++..+++.++++|||+|||+|+++..+++.+++.++|+++|+++++++.|++++...+..+ +++..+
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEEC
Confidence 3456778888889999999999999999999999999999987767899999999999999999999888765 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+.....+. +.||+|+++...+ .....+.+.|+|||++++..
T Consensus 135 d~~~~~~~~---~~fD~I~~~~~~~-~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEEN---APYDRIYVTAAGP-DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcC---CCcCEEEECCCcc-cchHHHHHhhCCCcEEEEEE
Confidence 987432233 6899999865432 34567888999999998753
No 14
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.66 E-value=6e-15 Score=124.80 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=115.4
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.....++..+++.++.+|||+|||+|.++..+++.. +.++|+++|+++++++.+++|+...++.+ ++++.+|+.. .+
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~-~~ 103 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPE-CL 103 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHH-HH
Confidence 333357888888999999999999999999998764 56899999999999999999999888865 9999998863 12
Q ss_pred CCcCCCCccEEEecCCCh-hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 175 PDEFSGLADSIFLDLPQP-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
.. ....+|.++++...+ ..+++.+.+.|+|||.+++..+..++.....+.++. +....+.++...+.++..
T Consensus 104 ~~-~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (196)
T PRK07402 104 AQ-LAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLETR 176 (196)
T ss_pred hh-CCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcccc
Confidence 11 013468887765544 478999999999999999999888887777777776 455666666655555443
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.66 E-value=3e-15 Score=127.47 Aligned_cols=120 Identities=27% Similarity=0.326 Sum_probs=99.5
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
..+..|...+.+++.+++.++++|||+|||+|..+..+++.+++.++|+++|+++++++.|++++...+..+++++..+|
T Consensus 53 ~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 53 ATISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred CEechHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 34455666777889999999999999999999999999998766789999999999999999999988887669999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.. .++.. .+||+|+++.... .+.+.+.+.|+|||++++-
T Consensus 133 ~~~-~~~~~--~~fD~Ii~~~~~~-~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 133 GKR-GLEKH--APFDAIIVTAAAS-TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccc-CCccC--CCccEEEEccCcc-hhhHHHHHhcCcCcEEEEE
Confidence 874 33321 6899999876543 3457888999999999863
No 16
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.66 E-value=2.7e-15 Score=128.82 Aligned_cols=120 Identities=29% Similarity=0.331 Sum_probs=100.4
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
...+..|...+.+++.+++.++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++++...++.+ ++++.+
T Consensus 57 ~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~ 135 (215)
T TIGR00080 57 GQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVG 135 (215)
T ss_pred CCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEEC
Confidence 3455667777889999999999999999999999999999987666889999999999999999999998865 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|+.. .++.. ..||+|+++.+.+ .+...+.+.|+|||++++.
T Consensus 136 d~~~-~~~~~--~~fD~Ii~~~~~~-~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQ-GWEPL--APYDRIYVTAAGP-KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred Cccc-CCccc--CCCCEEEEcCCcc-cccHHHHHhcCcCcEEEEE
Confidence 9874 33321 5899999876543 3567888999999999874
No 17
>PRK14967 putative methyltransferase; Provisional
Probab=99.64 E-value=1.4e-15 Score=131.29 Aligned_cols=124 Identities=26% Similarity=0.234 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
.+..+.+.++++|||+|||+|.++..+++. +..+++++|+++.+++.+++|+...+.. +.+..+|+.. .++.
T Consensus 28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~~~~d~~~-~~~~--- 99 (223)
T PRK14967 28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VDVRRGDWAR-AVEF--- 99 (223)
T ss_pred HHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eEEEECchhh-hccC---
Confidence 344556788899999999999999988875 3469999999999999999999877752 7888888863 3444
Q ss_pred CCccEEEecCCCh--------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 180 GLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 180 ~~~D~V~~d~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+.||+|++++|-. ..++..+.+.|+|||.++++.+...+..+....+++ +|.
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 6899999987521 135678899999999999877666666777777776 553
No 18
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.64 E-value=1.3e-15 Score=129.14 Aligned_cols=121 Identities=31% Similarity=0.401 Sum_probs=97.5
Q ss_pred CCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
....+..|...+.+++.++++||++|||||||+|+.+..++..+++.++|+++|+.+...+.|++++...+..+ +.+..
T Consensus 51 ~~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~ 129 (209)
T PF01135_consen 51 CGQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVV 129 (209)
T ss_dssp TTEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEE
T ss_pred ceeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEE
Confidence 34566778889999999999999999999999999999999999888899999999999999999999999886 99999
Q ss_pred ecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 167 RDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 167 ~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+|.. ..++.. ..||.|++....+ ..-..+.+.|++||++++-
T Consensus 130 gdg~-~g~~~~--apfD~I~v~~a~~-~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 130 GDGS-EGWPEE--APFDRIIVTAAVP-EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp S-GG-GTTGGG---SEEEEEESSBBS-S--HHHHHTEEEEEEEEEE
T ss_pred cchh-hccccC--CCcCEEEEeeccc-hHHHHHHHhcCCCcEEEEE
Confidence 9987 566543 6899999875543 2345678889999999974
No 19
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=5.2e-15 Score=130.55 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=93.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh--cCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER--TGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++..+.+.++.+|||+|||+|.++..+++.+++.++|+++|+|++|++.|+++... .....+++++.+|+.+.++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~- 143 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD- 143 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC-
Confidence 45667888999999999999999999998876678999999999999999877532 122234999999998777776
Q ss_pred CCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+++..+++++.++|||||++++...
T Consensus 144 --~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 --CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred --CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 78999975 467888999999999999999987643
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=3e-15 Score=123.75 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=99.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+...++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.+++|+..+++.+ +++...|.. ..++.
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~-~~~~~-- 96 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLF-EALPD-- 96 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTT-TTCCT--
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccc-ccccc--
Confidence 35555555578899999999999999999874 66789999999999999999999999988 999999987 34554
Q ss_pred CCCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEee
Q 021550 179 SGLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 179 ~~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+.||+|++++|-. ..++..+.+.|+|||.+++........... +++.|...++++..
T Consensus 97 -~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~ 163 (170)
T PF05175_consen 97 -GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVVAKN 163 (170)
T ss_dssp -TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEEEEE
T ss_pred -cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEEEEC
Confidence 7899999998832 357889999999999996554433333333 55556666655543
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.63 E-value=1.3e-14 Score=132.71 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=95.5
Q ss_pred HHHHhcCC-----CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 99 FVIMYLEL-----VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 99 ~i~~~~~~-----~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
.++..+.+ .++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++....++.+++++..+|+...+
T Consensus 104 ~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~ 181 (340)
T PLN02244 104 ESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP 181 (340)
T ss_pred HHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC
Confidence 45666776 788999999999999999999885 57999999999999999999888888767999999998766
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+++ +.||+|++ +.++...++.++.++|+|||.|++..
T Consensus 182 ~~~---~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 182 FED---GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCC---CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 766 78999985 45678889999999999999998753
No 22
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=6.7e-15 Score=125.00 Aligned_cols=118 Identities=25% Similarity=0.358 Sum_probs=101.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC-CCCC--CCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI-QGQG--FPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~-~~~~--~~~~~~~~~D~ 184 (311)
++.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...+..+ +.++.+|+ .... ++. +.||.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~---~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPD---GSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCc---cccce
Confidence 67899999999999999999875 66899999999999999999998887755 99999998 4322 444 68999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
|+++.+.+| .+++++.++|+|||.+++.++....+.++.+.+++ ++
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 998766543 57899999999999999999999999999999887 54
No 23
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.63 E-value=8.8e-15 Score=125.60 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=115.0
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
.|.-++..+..+....+|||+|||+|.+++.++++. +..+++++|+++++.+.|+++++.+++.+++++++.|+.....
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 344456677787778999999999999999999996 3599999999999999999999999999999999999975221
Q ss_pred CCcCCCCccEEEecCC-----------------------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 175 PDEFSGLADSIFLDLP-----------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~-----------------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
. ....+||+|++|+| +..++++.+.++|||||.++++.+ .+.+.++.+.+++ +|
T Consensus 110 ~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r-~erl~ei~~~l~~~~~ 187 (248)
T COG4123 110 A-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR-PERLAEIIELLKSYNL 187 (248)
T ss_pred c-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec-HHHHHHHHHHHHhcCC
Confidence 1 11156999999988 123578899999999999997666 5668888888888 67
Q ss_pred ceeeEEEeec
Q 021550 231 TDIRTFEILL 240 (311)
Q Consensus 231 ~~~~~~e~~~ 240 (311)
...+...+..
T Consensus 188 ~~k~i~~V~p 197 (248)
T COG4123 188 EPKRIQFVYP 197 (248)
T ss_pred CceEEEEecC
Confidence 6655554443
No 24
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.61 E-value=8.8e-15 Score=123.55 Aligned_cols=116 Identities=22% Similarity=0.381 Sum_probs=100.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC---CCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---GFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~~~~~~~~D~ 184 (311)
...+|||+|||+|.++..+++.. |...++++|+++++++.|++++...++.+ +.++.+|+... .++. +.+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~---~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPD---GSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCC---CceeE
Confidence 45699999999999999999885 78899999999999999999998888875 99999999641 1333 58999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+++.|+|| .++..+.++|+|||.|++.+.......++.+.+..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 999998875 47899999999999999988888888888888877
No 25
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.4e-14 Score=122.44 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=110.1
Q ss_pred HHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHH
Q 021550 78 PELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-----GHVYTFDFHEQRAASARED 152 (311)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~ 152 (311)
++.....+..+.+.++ ++ +.+..+++.++.++||++||||-.+..+.+.+... .+|+.+|++++|++.++++
T Consensus 73 YD~mND~mSlGiHRlW-Kd--~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLW-KD--MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHH-HH--HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 3444455566666666 33 36788999999999999999999999999998532 8999999999999999999
Q ss_pred HHhcCCCCc--EEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 153 FERTGVSSF--VTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 153 ~~~~g~~~~--v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+.++... +.++.+|+++.+|++ ..||...+ +.+++..++++++++|||||++.+.....
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~LpFdd---~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 150 AKKRPLKASSRVEWVEGDAEDLPFDD---DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HhhcCCCcCCceEEEeCCcccCCCCC---CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 877777544 899999999988988 89998754 77899999999999999999998765443
No 26
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=3.7e-14 Score=126.12 Aligned_cols=107 Identities=29% Similarity=0.375 Sum_probs=92.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
..+++.++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++....++.+ +++..+|+...++++ +.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~~~~---~~ 146 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALPVAD---NS 146 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCCCCC---Cc
Confidence 44678899999999999999998888887777899999999999999999998888764 899999987655655 78
Q ss_pred ccEEEecC-----CChhhHHHHHHhcccCCcEEEEe
Q 021550 182 ADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 182 ~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
||+|+.+. ++...+++++.++|+|||++++.
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99998653 46778999999999999999974
No 27
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=2.8e-14 Score=128.70 Aligned_cols=204 Identities=17% Similarity=0.149 Sum_probs=136.1
Q ss_pred CcEEEEecCCHHH----HhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH
Q 021550 68 GGFVYLLAPTPEL----WTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE 143 (311)
Q Consensus 68 ~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~ 143 (311)
..++.+.+|+... |....+.+...+..+.+++|+.++++++|.++|.+-.-.|.++.+++.++++.|.++-+=...
T Consensus 164 ~~~~~v~rPt~r~l~~~yy~kdp~rI~~lr~D~Lsl~Ltlanv~~g~~~Lv~d~tgGL~~galleRmgG~G~i~~~hpG~ 243 (475)
T KOG1416|consen 164 AKRFQVLRPTIRLLLQAYYDKDPQRILDLRADTLSLLLTLANVQAGGNYLVVDETGGLLLGALLERMGGTGDIIHKHPGK 243 (475)
T ss_pred hhheeeechhHHHHHHHHHHhChHHHhhhhHHHHHHHHHHhCcccCCeEEEEecCCcchHHHHHHHhcCCceeEEecCCC
Confidence 5667889998854 334455566677888899999999999999999999888999999999998777776552211
Q ss_pred HHH-HHHHH------------------HHHhcCC--CCcEE--EEEecCCC---CCCC----Cc----CCCC--------
Q 021550 144 QRA-ASARE------------------DFERTGV--SSFVT--VGVRDIQG---QGFP----DE----FSGL-------- 181 (311)
Q Consensus 144 ~~~-~~a~~------------------~~~~~g~--~~~v~--~~~~D~~~---~~~~----~~----~~~~-------- 181 (311)
... ..... .+..... +.+.. ++..+-.. ..+. +. ..+.
T Consensus 244 vp~~~~~~~~~~~d~~l~~lv~~~i~~vl~~~h~~~~~~~~~~~ve~~e~~l~E~~~~~~~~eE~~a~~~~~~~~~i~~~ 323 (475)
T KOG1416|consen 244 VPQISAVLIFNFPDANLDRLVQVNINEVLSKKHVTTDANLLYSVVEPPENELNETQLSPLPKEEPEAIEPGKLKNTIDHK 323 (475)
T ss_pred CchHHHHHHhcCchhhhhheeeccHHHHhHhhhcCCccccccceecCCCCchhhhccCCcccccchhcCCCccccccccc
Confidence 100 00000 0000000 00011 11111000 0000 00 0000
Q ss_pred --------cc--------------------EEEec-CCChhhHHHHHHh---cccCCcEEEEecCCHHHHHHHHHHHhh-
Q 021550 182 --------AD--------------------SIFLD-LPQPWLAIPSAKK---MLKQDGILCSFSPCIEQVQRSCESLRL- 228 (311)
Q Consensus 182 --------~D--------------------~V~~d-~~~~~~~l~~~~~---~LkpgG~lv~~~~~~~~~~~~~~~l~~- 228 (311)
++ +++++ ..++|-+++..+. .|+|.+.+++|+++.+.+.+.+.+|.+
T Consensus 324 ~~~~r~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~~d~~vvae~~hpll~~l~pSrp~viy~q~ke~L~e~~~~L~~~ 403 (475)
T KOG1416|consen 324 ESLIRKAKWYNSQWQIKEGIEEWLYEGLVSAILMHRPTDPLVVAEKIHPLLDNLAPSRPIVIYSQYKEPLQECYHKLYQR 403 (475)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhcccccchhhHHHhcccccccCCCCCEEEeechhHHHHHHHHHHhhc
Confidence 10 01111 1255555565555 889999999999999999999999998
Q ss_pred -cCceeeEEEeeceeeEEeeeeccCCCCCCCCCCCccccccccccccCCCCCCCCCCcceeecCCCCccccceeeEeEEe
Q 021550 229 -NFTDIRTFEILLRTYEIRQWRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENPNNSTVMARPNGEARGHTGYLTFARL 307 (311)
Q Consensus 229 -~f~~~~~~e~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~htgyl~~a~~ 307 (311)
.+.+..+.|.|+|.|||.|+| +||.|.|+|.+|||+++.+
T Consensus 404 ~~vinL~ite~wlR~YQVLP~R---------------------------------------tHP~M~msg~gGylLsGik 444 (475)
T KOG1416|consen 404 GKVINLSITETWLRPYQVLPDR---------------------------------------THPLMTMSGGGGYLLSGIK 444 (475)
T ss_pred CceEeeeechhhccceeecCCC---------------------------------------CCcceEeecCCceEEeeeE
Confidence 599999999999999999998 6999999999999999988
Q ss_pred ecc
Q 021550 308 KCL 310 (311)
Q Consensus 308 ~~~ 310 (311)
...
T Consensus 445 v~~ 447 (475)
T KOG1416|consen 445 VIT 447 (475)
T ss_pred Eec
Confidence 753
No 28
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.59 E-value=2.5e-14 Score=126.40 Aligned_cols=134 Identities=28% Similarity=0.315 Sum_probs=103.6
Q ss_pred eeeecccHHH--HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 90 QILYIADISF--VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 90 ~~~~~~~~~~--i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
..++..+.+. ....+++.+|.+|||+|||+|..+.++++.+++.+.|+++|+++.+++.+++++++.++.+ +.+...
T Consensus 51 G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~ 129 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNF 129 (264)
T ss_pred CeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecC
Confidence 3344445443 3466788999999999999999999999998767899999999999999999999999876 999999
Q ss_pred cCCCCCCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---H
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---E 217 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~ 217 (311)
|+....... +.||.|++|+|+. ..+|..+.+.|+|||+++ |+.|. +
T Consensus 130 D~~~~~~~~---~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv-Ystcs~~~~ 205 (264)
T TIGR00446 130 DGRVFGAAV---PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV-YSTCSLEPE 205 (264)
T ss_pred CHHHhhhhc---cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeCCCChH
Confidence 986432222 5699999998733 247889999999999997 66554 3
Q ss_pred HHHHHHHHHhh
Q 021550 218 QVQRSCESLRL 228 (311)
Q Consensus 218 ~~~~~~~~l~~ 228 (311)
+.+..++.+.+
T Consensus 206 Ene~vv~~~l~ 216 (264)
T TIGR00446 206 ENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHHH
Confidence 33445554444
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=8.3e-14 Score=116.38 Aligned_cols=119 Identities=22% Similarity=0.143 Sum_probs=95.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|..+..+++.. +.++|+++|+++++++.|+++++..++.+ +++..+|+.+... . ++||+|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~---~~fDlV 116 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E---EKFDVV 116 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C---CCccEE
Confidence 4458999999999999999999864 67899999999999999999999999877 9999999975333 3 689999
Q ss_pred EecC-CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 186 FLDL-PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 186 ~~d~-~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+++. .....+++.+.+.|+|||.++++.+. ....++.+..+. ++.
T Consensus 117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 117 TSRAVASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPKALGGK 163 (187)
T ss_pred EEccccCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHHhcCce
Confidence 9864 34567889999999999999987544 334444444443 554
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.8e-14 Score=115.75 Aligned_cols=106 Identities=25% Similarity=0.410 Sum_probs=89.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+.+.+|||+|||+|.++..++..+++.++++++|+++++++.|+++++..+..+ +++.++|+.+ ++....+.||+|+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~--l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIED--LPQELEEKFDIII 78 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTC--GCGCSSTTEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhc--cccccCCCeeEEE
Confidence 467899999999999999999776778999999999999999999999999885 9999999985 3321115899999
Q ss_pred ec-----CCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 187 LD-----LPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++ .+++..+++.+.+.|+++|.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 75 456668899999999999999987665
No 31
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.58 E-value=3.2e-14 Score=133.87 Aligned_cols=113 Identities=26% Similarity=0.451 Sum_probs=95.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~ 177 (311)
.+...+++.+|.+|||+|||+|+.+.+++..+++.++|+++|+++.+++.+++++++.|+.+ +++...|+.... +..
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~- 305 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQ- 305 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhh-
Confidence 35567889999999999999999999999998778999999999999999999999999876 899999987422 223
Q ss_pred CCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.||.|++|+|+. +++|.++.+.|+|||.++ |++|.
T Consensus 306 --~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lv-YsTCs 368 (431)
T PRK14903 306 --DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILL-YSTCT 368 (431)
T ss_pred --ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEECC
Confidence 6799999998851 346889999999999976 66665
No 32
>PTZ00146 fibrillarin; Provisional
Probab=99.56 E-value=2.7e-13 Score=119.43 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=94.0
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~ 180 (311)
..+.+.++++|||+|||+|.++.+++..+++.+.|+++|+++.+.+...+.+... .| +.++..|+.... +.. ..+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~-~~~ 201 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRM-LVP 201 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhc-ccC
Confidence 4556899999999999999999999999988899999999987664444433221 33 888899986421 111 115
Q ss_pred CccEEEecCCChhh---HHHHHHhcccCCcEEEEe--------cCCHHH-HHHHHHHHhh-cCceeeEEE
Q 021550 181 LADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF--------SPCIEQ-VQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 181 ~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~--------~~~~~~-~~~~~~~l~~-~f~~~~~~e 237 (311)
.+|+||+|...+++ ++.++.++|||||.|++. .+..++ +.+-.+.|++ +|..++.++
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 79999999876663 456889999999999983 112222 3333466776 687666554
No 33
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=120.38 Aligned_cols=124 Identities=22% Similarity=0.265 Sum_probs=104.7
Q ss_pred CCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 87 HRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
....++.|....++..++...++.+|||+|++.|+.++++|..+..+++++++|+++++.+.|++|+++.|+.+++..+.
T Consensus 38 ~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 38 NGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred cCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 34455557777778888888899999999999999999999999668999999999999999999999999999888888
Q ss_pred -ecCCCCCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 167 -RDIQGQGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 167 -~D~~~~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+|..+ .+.....++||+||+|.. ....+++.+.+.|+|||.+++
T Consensus 118 ~gdal~-~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 118 GGDALD-VLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cCcHHH-HHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 57764 222222389999999764 556799999999999999987
No 34
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.56 E-value=1.3e-13 Score=114.96 Aligned_cols=125 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...+...++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++...+. + +++..+|+.. . ..
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~-~~~~~~d~~~-~-~~-- 80 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-G-LDVVMTDLFK-G-VR-- 80 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEccccc-c-cC--
Confidence 45566666778899999999999999998872 3899999999999999999987775 3 8888888864 2 23
Q ss_pred CCCccEEEecCCC--------------------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 179 SGLADSIFLDLPQ--------------------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 179 ~~~~D~V~~d~~~--------------------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
++||+|++++|- ...++..+.++|+|||.++++.+...+..++...+.+ +|.
T Consensus 81 -~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 81 -GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFR 159 (179)
T ss_pred -CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCe
Confidence 689999988662 1246888999999999999888877778888888877 664
Q ss_pred ee
Q 021550 232 DI 233 (311)
Q Consensus 232 ~~ 233 (311)
..
T Consensus 160 ~~ 161 (179)
T TIGR00537 160 YE 161 (179)
T ss_pred EE
Confidence 33
No 35
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=7.7e-14 Score=131.82 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=95.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----C
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----F 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~ 174 (311)
.+...+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+...|+.+ +.++.+|+.... +
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccc
Confidence 45667889999999999999999999999998777899999999999999999999999877 999999987532 2
Q ss_pred CCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 175 PDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.. +.||.|++|+|+. .++|.++.+.|||||+|+ |+.|
T Consensus 322 ~~---~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv-ystc 385 (434)
T PRK14901 322 WR---GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV-YATC 385 (434)
T ss_pred cc---ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 22 6799999998742 356899999999999998 4443
No 36
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=1.2e-13 Score=107.52 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=89.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+.+.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++...+..+ +++...|+.. .++. .
T Consensus 10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~-~~~~-~ 85 (124)
T TIGR02469 10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPE-ALED-S 85 (124)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccc-cChh-h
Confidence 46677788888999999999999999999986 45899999999999999999998887765 8888888753 1111 1
Q ss_pred CCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+||.|+++.+ ....+++.+.+.|+|||.+++-
T Consensus 86 ~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 158999998653 3357899999999999999863
No 37
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=5.6e-13 Score=126.37 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=93.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+..+++.+|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++...|+.+ +++..+|+... .+.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~-~~~-- 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSF-SPE-- 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccc-ccC--
Confidence 46677888999999999999999999999988667899999999999999999999999865 99999998743 233
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..||+|++|+|+. ..+|..+.+.|+|||+++. +.|
T Consensus 317 -~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvy-stc 378 (445)
T PRK14904 317 -EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVY-ATC 378 (445)
T ss_pred -CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE-EeC
Confidence 6799999998741 1468899999999999984 443
No 38
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.55 E-value=1.3e-13 Score=126.15 Aligned_cols=127 Identities=19% Similarity=0.241 Sum_probs=108.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGF 174 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~ 174 (311)
...++..+....+..+||||||+|.++..+|+.. |...++|+|+++.+++.|.+++...++.+ +.++.+|+.. ..+
T Consensus 111 ~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~ 188 (390)
T PRK14121 111 IDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELL 188 (390)
T ss_pred HHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhC
Confidence 3345666666677899999999999999999995 78999999999999999999999989887 9999999863 235
Q ss_pred CCcCCCCccEEEecCCChh-----------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 175 PDEFSGLADSIFLDLPQPW-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~-----------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++ +++|.|+++.|+|| .++..+.++|+|||.+.+.+...+......+.+.+
T Consensus 189 ~~---~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 189 PS---NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CC---CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 55 78999999999986 58999999999999999988888777777777655
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=1.9e-13 Score=113.98 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..++.. .+.++|+++|.++.+++.++++++..++.+ ++++.+|+.+. ... +.||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~~~---~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-QHE---EQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-ccc---CCccEEEe
Confidence 4889999999999999998865 467899999999999999999999888866 99999999753 122 68999998
Q ss_pred cC-CChhhHHHHHHhcccCCcEEEEecC
Q 021550 188 DL-PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 188 d~-~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+. .+...+++.+.+.|+|||.++++..
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 64 3445678889999999999998754
No 40
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=1.3e-13 Score=121.51 Aligned_cols=110 Identities=21% Similarity=0.243 Sum_probs=90.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GF 174 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~ 174 (311)
++..++..+. .++.+|||+|||+|.++..+++. ..+|+++|+++++++.|++++...++.++++++++|+.+. .+
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~ 108 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH 108 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh
Confidence 3445666665 45689999999999999999987 4799999999999999999998888766699999998652 23
Q ss_pred CCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEe
Q 021550 175 PDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.. ++||+|+++ .+++..++.++.++|+|||.+++.
T Consensus 109 ~~---~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 109 LE---TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred cC---CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 33 789999864 457888999999999999999764
No 41
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.5e-13 Score=125.45 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=108.0
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.+.|.....++.++++.++.+|||+|||+|.++..++.. +.+++++|+++.+++.|++|+...++.+ +.+..+|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 345555666778888999999999999999998876654 5899999999999999999999999887 889999998
Q ss_pred CCCCCCcCCCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 171 GQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
+.+++. +.||+|++|+|- ...++..+.+.|+|||++++..|....+.+ .++. +| .+..
T Consensus 241 ~l~~~~---~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~---~~~~~g~-i~~~ 313 (329)
T TIGR01177 241 KLPLSS---ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLES---LAEDAFR-VVKR 313 (329)
T ss_pred cCCccc---CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHH---HHhhcCc-chhe
Confidence 755554 789999999772 246788999999999999988877654443 3444 56 4443
Q ss_pred EE
Q 021550 236 FE 237 (311)
Q Consensus 236 ~e 237 (311)
++
T Consensus 314 ~~ 315 (329)
T TIGR01177 314 FE 315 (329)
T ss_pred ee
Confidence 33
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.54 E-value=3.4e-14 Score=120.11 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=89.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
-+|.+|||+|||.|.++..+|+. ++.|+++|+++++++.|+....+.++. +++....+++..... ++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~---~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG---GQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC---CCccEEE
Confidence 58999999999999999999988 599999999999999999998888765 566666665432232 6899997
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHH
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCE 224 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 224 (311)
+ +.|+|..++..+.+.+||||.+++..+.......+..
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~ 172 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA 172 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH
Confidence 5 7899999999999999999999987665544333333
No 43
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.54 E-value=4e-14 Score=122.83 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=96.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+....++..++...++.+|||+|||+|+.++.++..+.++++|+++|+++++++.|+++++..|+.++++++.+|+.+ .
T Consensus 54 ~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~ 132 (234)
T PLN02781 54 VDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-A 132 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-H
Confidence 333335556667778899999999999999999998877899999999999999999999999998889999999974 2
Q ss_pred CCCc----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 174 FPDE----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ~~~~----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++.. ..+.||+||+|.. ..+.+++.+.+.|+|||.+++
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2110 0157999999875 446789999999999999886
No 44
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.5e-13 Score=120.99 Aligned_cols=133 Identities=24% Similarity=0.251 Sum_probs=103.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|.+|||+|||||.++++.++. +..+|+++|++|.+++.|++|+..+++...+.....+.. ..... +.||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~---~~~DvI 233 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPEN---GPFDVI 233 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhccc---CcccEE
Confidence 358999999999999999998887 578899999999999999999999998752333333332 22222 589999
Q ss_pred EecCCC-h-hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEe
Q 021550 186 FLDLPQ-P-WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 186 ~~d~~~-~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~ 246 (311)
+.|.-. + ..+...+.+.|+|||++++..-..++...+.+.+.+ +|...+..+. .+|-..
T Consensus 234 VANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~--~eW~~i 295 (300)
T COG2264 234 VANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER--EEWVAI 295 (300)
T ss_pred EehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec--CCEEEE
Confidence 998642 2 256788999999999999988888999999999966 7876665544 455443
No 45
>PRK14968 putative methyltransferase; Provisional
Probab=99.53 E-value=4.3e-13 Score=112.38 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=101.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~D~~~~~~~~~ 177 (311)
.++..+...++.+|||+|||+|.++..+++. ..+++++|+++++++.+++++...+..+. +.+...|+.+ .+..
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~- 88 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRG- 88 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccc-
Confidence 3556666678899999999999999999987 48999999999999999999988776543 7888888864 4444
Q ss_pred CCCCccEEEecCCCh--------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC
Q 021550 178 FSGLADSIFLDLPQP--------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF 230 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~--------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f 230 (311)
..||+|+.++|-. ..+++++.++|+|||.+++..+.......+.+.+.+ +|
T Consensus 89 --~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~ 166 (188)
T PRK14968 89 --DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGF 166 (188)
T ss_pred --cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCC
Confidence 5799999876521 236899999999999998887776666777778877 66
Q ss_pred cee
Q 021550 231 TDI 233 (311)
Q Consensus 231 ~~~ 233 (311)
...
T Consensus 167 ~~~ 169 (188)
T PRK14968 167 EAE 169 (188)
T ss_pred eee
Confidence 543
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.53 E-value=3e-13 Score=119.48 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=91.1
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
...++..+.+.++.+|||+|||+|..+..++... .++|+++|+++.+++.|++++.. .+++.+..+|+...++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC
Confidence 3347788899999999999999999999888764 57999999999999999987653 245899999988666766
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|++ +.+ ++..+++++.++|+|||.|++..+
T Consensus 116 ---~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 116 ---NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ---CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 78999986 233 567899999999999999998643
No 47
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.52 E-value=3.8e-13 Score=115.18 Aligned_cols=117 Identities=28% Similarity=0.320 Sum_probs=96.3
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
..+..|...+.++..+++.++.+|||+|||+|.++..+++.. ++|+++|+++++++.|++++...++.+ +++..+|
T Consensus 59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d 134 (212)
T PRK00312 59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGD 134 (212)
T ss_pred CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECC
Confidence 345667777788899999999999999999999999888773 589999999999999999999888876 9999999
Q ss_pred CCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
... .++.. +.||+|+++.... .....+.+.|+|||.+++..
T Consensus 135 ~~~-~~~~~--~~fD~I~~~~~~~-~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 135 GWK-GWPAY--APFDRILVTAAAP-EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ccc-CCCcC--CCcCEEEEccCch-hhhHHHHHhcCCCcEEEEEE
Confidence 863 34321 6799999876533 35678899999999998753
No 48
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.52 E-value=4.8e-13 Score=126.22 Aligned_cols=136 Identities=27% Similarity=0.341 Sum_probs=108.7
Q ss_pred ceeeecccHHH--HHHhc--CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 89 TQILYIADISF--VIMYL--ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 89 ~~~~~~~~~~~--i~~~~--~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
...++..+.+. ....+ ++.||.+|||+|+|+|+-+.+++..+++.+.|++.|+++.+++.+++|+.+.|+.+ +.+
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v 168 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VAL 168 (470)
T ss_pred CCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEE
Confidence 34455555443 34556 78999999999999999999999999878999999999999999999999999987 888
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH-
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI- 216 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~- 216 (311)
...|.... .....+.||.|++|+|+. .++|..+.+.|||||+|| |++|.
T Consensus 169 ~~~D~~~~--~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTCT~ 245 (470)
T PRK11933 169 THFDGRVF--GAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTCTL 245 (470)
T ss_pred EeCchhhh--hhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECCCC
Confidence 88888642 111126799999999854 357889999999999985 98887
Q ss_pred --HHHHHHHHHHhh
Q 021550 217 --EQVQRSCESLRL 228 (311)
Q Consensus 217 --~~~~~~~~~l~~ 228 (311)
++.+..++.+-+
T Consensus 246 ~~eENE~vV~~~L~ 259 (470)
T PRK11933 246 NREENQAVCLWLKE 259 (470)
T ss_pred CHHHHHHHHHHHHH
Confidence 566666665544
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.51 E-value=5.4e-13 Score=119.44 Aligned_cols=121 Identities=23% Similarity=0.257 Sum_probs=97.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++|+..+++.+.+.+...+.. .... ++||+|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~---~~fDlV 229 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIE---GKADVI 229 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccC---CCceEE
Confidence 457899999999999999887765 457999999999999999999998888766777766532 2233 689999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
+++.... ..++..+.+.|+|||.+++.....++..++.+.+.++|...
T Consensus 230 van~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 230 VANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred EEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCcee
Confidence 9876533 36788999999999999988888888888888887665443
No 50
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=1.4e-12 Score=123.74 Aligned_cols=114 Identities=28% Similarity=0.427 Sum_probs=94.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+...+++.++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++|+.+.|+.+ +++..+|+.... .. .
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~-~~-~ 317 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVH-EK-F 317 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccccc-ch-h
Confidence 45667888999999999999999999999988677899999999999999999999999877 999999987421 11 1
Q ss_pred CCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH
Q 021550 179 SGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
.+.||+|++|+|+. ..+|..+.+.|+|||.++ |+.|.
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv-ystcs 381 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV-YSTCT 381 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE-EEcCC
Confidence 15799999998732 246889999999999998 54443
No 51
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=1.3e-12 Score=123.36 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=94.8
Q ss_pred eeecccHH--HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 91 ILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 91 ~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
.++..+.+ .++..+++.+|.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++...|+. +.++.+|
T Consensus 225 ~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D 301 (427)
T PRK10901 225 WVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGD 301 (427)
T ss_pred eEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcC
Confidence 44444444 46678889999999999999999999999986 3489999999999999999999998874 6788999
Q ss_pred CCCCC--CCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCC
Q 021550 169 IQGQG--FPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 169 ~~~~~--~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+.... +.. ++||.|++|+|+. ..++..+.+.|+|||.++ |+.|
T Consensus 302 ~~~~~~~~~~---~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv-ystc 373 (427)
T PRK10901 302 ARDPAQWWDG---QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL-YATC 373 (427)
T ss_pred cccchhhccc---CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 87421 222 6799999998743 147889999999999998 4443
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.51 E-value=1.8e-13 Score=121.05 Aligned_cols=108 Identities=28% Similarity=0.351 Sum_probs=84.5
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..+++.++++||++|||||||.|.++..+++.. +++|+++.+|++..+.|++.+...|+.+.+++...|..+ ++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~~- 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--LP- 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--cC-
Confidence 3458889999999999999999999999999997 589999999999999999999999999889999999864 33
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+||.|++ +++ ....+++.+.++|+|||.+++-
T Consensus 126 ---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 ---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 47999874 332 3357899999999999999863
No 53
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=2.9e-13 Score=118.29 Aligned_cols=109 Identities=23% Similarity=0.268 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
+..++..+++.||++|||||||.|.+++.+|+.. +.+|+|+++|+++.+.+++++...|+..++++...|..+ +.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd--~~- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD--FE- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc--cc-
Confidence 3458899999999999999999999999999997 699999999999999999999999999779999998864 44
Q ss_pred cCCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||.|++ +.. ....++..+.+.|+|||.+++.+
T Consensus 136 ---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 ---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 45999884 222 34578999999999999998753
No 54
>PLN02476 O-methyltransferase
Probab=99.51 E-value=1.3e-13 Score=121.18 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.|....++..++...++.+|||+|+++|+.+++++..++++++|+++|.+++..+.|++++++.|+.++++++.+|+.+
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e- 181 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE- 181 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-
Confidence 4444445666677778899999999999999999999877899999999999999999999999998889999999874
Q ss_pred CCCC----cCCCCccEEEecCCC--hhhHHHHHHhcccCCcEEEE
Q 021550 173 GFPD----EFSGLADSIFLDLPQ--PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 173 ~~~~----~~~~~~D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~ 211 (311)
.++. ...+.||+||+|.+. .+.+++.+.+.|+|||.+++
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2211 011579999999874 46789999999999999986
No 55
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=3.9e-13 Score=123.54 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=98.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--SFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--~~v~~~~~D~~~~~~~~ 176 (311)
+++..+....+.+|||+|||+|.++..++++. |..+|+++|+|+.+++.|++|++.++.. .++++...|... .++.
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~ 296 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEP 296 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCC
Confidence 46777766666799999999999999999884 7889999999999999999999877643 247888888763 3443
Q ss_pred cCCCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeE
Q 021550 177 EFSGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
.+||+|++|+|- .++++..+.+.|+|||.+++.... .......|++.|.+.+.
T Consensus 297 ---~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr---~l~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 297 ---FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR---HLDYFHKLKKIFGNCTT 359 (378)
T ss_pred ---CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec---CcCHHHHHHHHcCCceE
Confidence 589999999882 256789999999999999876422 12233445444555543
No 56
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=1.4e-13 Score=101.81 Aligned_cols=90 Identities=29% Similarity=0.448 Sum_probs=74.9
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL----- 187 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~----- 187 (311)
||+|||+|..+..+++. +..+|+++|+++++++.++++....+ +.+...|+...++++ ++||+|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~---~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD---NSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T---T-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc---cccccccccccee
Confidence 89999999999999998 57999999999999999998765433 669999998887887 89999985
Q ss_pred cCCChhhHHHHHHhcccCCcEEEE
Q 021550 188 DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
..+++..+++++.++|||||++++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 346777899999999999999985
No 57
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.50 E-value=2.1e-13 Score=123.13 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=86.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|+++....+...+++++.+|+.+..++. +.||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~---~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG---RKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc---CCCCEEE
Confidence 46789999999999999988864 57999999999999999988766554445999999987544444 7899998
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+ +.+++..++..+.++|||||.+++..+.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 5 5778899999999999999999976554
No 58
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=3.6e-13 Score=113.98 Aligned_cols=104 Identities=19% Similarity=0.152 Sum_probs=85.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+++.+...++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++....++.+ +++...|+....++
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---- 93 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD---- 93 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC----
Confidence 667777778899999999999999999986 4799999999999999999988888765 88888898754443
Q ss_pred CCccEEEecCC-------ChhhHHHHHHhcccCCcEEEE
Q 021550 180 GLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 180 ~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.||+|++... +...++.++.++|+|||.+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 57999985322 345789999999999999654
No 59
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=9.8e-14 Score=107.22 Aligned_cols=101 Identities=30% Similarity=0.421 Sum_probs=85.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~V~ 186 (311)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.|+.++...+...++++..+|+.+. .++. ++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD---GKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT---T-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC---ceeEEEE
Confidence 5799999999999999999883 6899999999999999999999998877799999999752 2444 7899999
Q ss_pred ecCCCh-------------hhHHHHHHhcccCCcEEEEecC
Q 021550 187 LDLPQP-------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~d~~~~-------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|+|-. ..+++.+.+.|+|||.++++.|
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 998732 3578999999999999998754
No 60
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.49 E-value=5.8e-13 Score=125.64 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=89.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--CC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~ 176 (311)
.++..+++.+|.+|||+|||+|..+.++++.++ .++|+++|+++++++.+++|+++.|+...+.+..+|...... +.
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 467788999999999999999999999999874 789999999999999999999998876334446666543221 22
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEE
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~ 211 (311)
+.||.|++|+|+. ..+|.++.+.|+|||.++.
T Consensus 308 ---~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 308 ---EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred ---cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 6799999987622 3578899999999999984
No 61
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=7.7e-13 Score=119.38 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=94.8
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
..|...+.+++.++++++++|||+|||+|.++..+++..+..+.|+++|+++++++.|++++...+..+ +.++.+|+..
T Consensus 64 ~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~ 142 (322)
T PRK13943 64 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYY 142 (322)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhh
Confidence 356666678888999999999999999999999999987545789999999999999999999888865 8999999864
Q ss_pred CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 172 QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ++.. ..||+|+++...+ .....+.+.|+|||.+++..
T Consensus 143 ~-~~~~--~~fD~Ii~~~g~~-~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 G-VPEF--APYDVIFVTVGVD-EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c-cccc--CCccEEEECCchH-HhHHHHHHhcCCCCEEEEEe
Confidence 2 3221 5799999875432 24456788999999988743
No 62
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=3.2e-13 Score=120.06 Aligned_cols=130 Identities=24% Similarity=0.278 Sum_probs=98.6
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|++|||+|||||.+++..++. +..+|+++|+++.+++.|++|+..+++.+++.+. .. ..... +.||+|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~--~~~~~---~~~dlv 229 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS--EDLVE---GKFDLV 229 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT--SCTCC---S-EEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee--ccccc---ccCCEE
Confidence 567899999999999999988876 5689999999999999999999999998766553 11 22333 789999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.|.-.. ...+..+.+.|+|||.+++..-..++...+.+.++++|.-.+..+ ..+|-..
T Consensus 230 vANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~--~~~W~~l 290 (295)
T PF06325_consen 230 VANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEERE--EGEWVAL 290 (295)
T ss_dssp EEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEE--ETTEEEE
T ss_pred EECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEE--ECCEEEE
Confidence 9987644 346677889999999999988888889999999876665544333 3445443
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=8.3e-13 Score=112.65 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=93.0
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----- 173 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----- 173 (311)
+..... +.++.+|||+|||+|.++..+++..++.++|+++|+++ + ....+ +.++++|+....
T Consensus 42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~-v~~i~~D~~~~~~~~~i 109 (209)
T PRK11188 42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVG-VDFLQGDFRDELVLKAL 109 (209)
T ss_pred HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCC-cEEEecCCCChHHHHHH
Confidence 334444 57889999999999999999999987778999999988 1 12334 889999998532
Q ss_pred ---CCCcCCCCccEEEecCCC-----h-----------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceee
Q 021550 174 ---FPDEFSGLADSIFLDLPQ-----P-----------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIR 234 (311)
Q Consensus 174 ---~~~~~~~~~D~V~~d~~~-----~-----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~ 234 (311)
+.. ++||+|++++.. + ..+|+.+.++|+|||.|++-....+.+.++...++..|..++
T Consensus 110 ~~~~~~---~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~ 186 (209)
T PRK11188 110 LERVGD---SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVK 186 (209)
T ss_pred HHHhCC---CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEE
Confidence 333 789999987621 1 247899999999999999866666777788888877787665
Q ss_pred E
Q 021550 235 T 235 (311)
Q Consensus 235 ~ 235 (311)
.
T Consensus 187 ~ 187 (209)
T PRK11188 187 V 187 (209)
T ss_pred E
Confidence 4
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.47 E-value=2e-12 Score=115.44 Aligned_cols=115 Identities=25% Similarity=0.282 Sum_probs=92.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+..+++.+++.+..+|+.+ .++. +.||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~---~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPG---RKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCC---CCccEEE
Confidence 456799999999999999999885 5689999999999999999999999887679999999863 3443 5799999
Q ss_pred ecCCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 187 LDLPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 187 ~d~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+|+|- | ..++..+.+.|+|||.+++-... .+ ..+.+.+..
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~ 264 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPD 264 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHh
Confidence 98762 1 23578888999999999875553 33 455565554
No 65
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.47 E-value=1.1e-13 Score=117.19 Aligned_cols=118 Identities=26% Similarity=0.323 Sum_probs=94.5
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+....++..++......+||||||+.|+.++++++.+.++++|+++|++++..+.|++++++.|+.++++++.+|+.+
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~- 108 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE- 108 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH-
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh-
Confidence 3444444444555566789999999999999999999877899999999999999999999999998889999999864
Q ss_pred CCC----CcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 173 GFP----DEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 173 ~~~----~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.++ ....+.||+||+|.. ....++..+.+.|+|||.+++
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEE
Confidence 111 100157999999876 345788999999999999997
No 66
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=3.8e-13 Score=118.50 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+...++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|+++ .+++..+|+... .+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~- 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDW-KPK- 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC-CCC-
Confidence 347788888889999999999999999999886 678999999999999998752 277888998643 233
Q ss_pred CCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|+++ .+++..++.++.+.|+|||.+++..
T Consensus 88 --~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 88 --PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred --CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 689999864 4677889999999999999998754
No 67
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.46 E-value=2.7e-12 Score=112.56 Aligned_cols=123 Identities=28% Similarity=0.328 Sum_probs=98.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+.+|||+|||+|.++..++... +..+++++|+++.+++.|++++...++.+ +++..+|+.. .++. ++||+|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~-~~~~---~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFE-PLPG---GKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhc-cCcC---CceeEEEE
Confidence 44699999999999999999885 56799999999999999999999888865 9999999874 4544 78999999
Q ss_pred cCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 188 d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
|+|-. ..++..+.+.|+|||.+++... ..+...+.+.+.+ +|..++.
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-ccHHHHHHHHHHhCCCCceEE
Confidence 87611 1357889999999999986543 3456677777777 7876665
Q ss_pred EE
Q 021550 236 FE 237 (311)
Q Consensus 236 ~e 237 (311)
..
T Consensus 240 ~~ 241 (251)
T TIGR03534 240 RK 241 (251)
T ss_pred Ee
Confidence 43
No 68
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=1.6e-12 Score=114.07 Aligned_cols=125 Identities=28% Similarity=0.295 Sum_probs=95.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++. +..+|+++|+++.+++.|++|+..+++...+.+..+| ..||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 467899999999999999877664 3457999999999999999999888764323322211 269999
Q ss_pred EecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEE
Q 021550 186 FLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 186 ~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
+.+.... ..+++.+.+.|+|||.+++.....++...+.+.+.+ +|...+..+. .+|..
T Consensus 184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~--~~W~~ 244 (250)
T PRK00517 184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER--GEWVA 244 (250)
T ss_pred EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe--CCEEE
Confidence 9876532 357889999999999999887778888888888887 6876654442 44444
No 69
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=6.4e-13 Score=116.77 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=90.2
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
+......+++.+...++.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++.. . ..++.+|+...
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~-~~~~~~d~~~~ 97 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----A-DHYLAGDIESL 97 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----C-CCEEEcCcccC
Confidence 3344445677777667889999999999999888764 4799999999999999987632 1 45778898765
Q ss_pred CCCCcCCCCccEEEecC-----CChhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 173 GFPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
++++ ++||+|+++. +++..++.++.++|+|||.+++..+....+.+
T Consensus 98 ~~~~---~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e 148 (251)
T PRK10258 98 PLAT---ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPE 148 (251)
T ss_pred cCCC---CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHH
Confidence 6665 7899998754 46678999999999999999986554333333
No 70
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.5e-12 Score=114.17 Aligned_cols=130 Identities=23% Similarity=0.278 Sum_probs=103.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+....+.+|||+|||.|.+++.+++.. |..+++.+|++..+++.|++|+..++..+. .+...|.. ....
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~-~~v~--- 222 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY-EPVE--- 222 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc-cccc---
Confidence 57788888877899999999999999999995 689999999999999999999999998873 67777776 3333
Q ss_pred CCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEe
Q 021550 179 SGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
++||.|++|+|- -|+++..+.+.|++||.|.++.. ........|.+-|.+++++..
T Consensus 223 -~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~ 288 (300)
T COG2813 223 -GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLAK 288 (300)
T ss_pred -ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCChHHHHHHhcCCEEEEEe
Confidence 579999999982 25789999999999999987644 223344455555776665543
No 71
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=1.4e-12 Score=118.32 Aligned_cols=131 Identities=22% Similarity=0.285 Sum_probs=100.7
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+++.+.+ .++.+|||+|||+|.++..+++.+ +..+|+++|+++++++.|+++... . ++++..+|+...+++.
T Consensus 104 ~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---~-~i~~i~gD~e~lp~~~-- 176 (340)
T PLN02490 104 ALEPADLSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---K-ECKIIEGDAEDLPFPT-- 176 (340)
T ss_pred HHhhcccCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---c-CCeEEeccHHhCCCCC--
Confidence 4444444 467899999999999999998886 457999999999999999987542 2 3788999998666665
Q ss_pred CCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH----------------HHHHHHHHHHhh-cCceeeEE
Q 021550 179 SGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI----------------EQVQRSCESLRL-NFTDIRTF 236 (311)
Q Consensus 179 ~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~----------------~~~~~~~~~l~~-~f~~~~~~ 236 (311)
+.||+|++. .+++..+++++.++|+|||.+++..+.. ....++.+.+++ +|..++..
T Consensus 177 -~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 177 -DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred -CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 789999863 4677789999999999999998754321 124566677777 79887765
Q ss_pred Ee
Q 021550 237 EI 238 (311)
Q Consensus 237 e~ 238 (311)
..
T Consensus 256 ~i 257 (340)
T PLN02490 256 RI 257 (340)
T ss_pred Ec
Confidence 43
No 72
>PRK08317 hypothetical protein; Provisional
Probab=99.46 E-value=1.9e-12 Score=112.31 Aligned_cols=111 Identities=30% Similarity=0.401 Sum_probs=92.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.+++.++++++|+++.+++.++++... ...++.+...|+....++.
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~~~-- 85 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLPFPD-- 85 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCCCCC--
Confidence 366788889999999999999999999999876678999999999999999987332 2334889999987655555
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.||+|++ +.+++..++.++.++|+|||.+++..+
T Consensus 86 -~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 -GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 78999985 456788899999999999999987543
No 73
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=2.5e-12 Score=110.97 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=97.0
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe--
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-- 187 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-- 187 (311)
++|||+|||+|.++..+++.. +..+|+++|+++++++.|++++...++.+++++...|+....++ +.||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~----~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP----DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC----CCCCEeehHH
Confidence 479999999999999999886 56899999999999999999998888887899999998644333 67999984
Q ss_pred ---cCCChhhHHHHHHhcccCCcEEEEecCCH---------------HHHHHHHHHHhh-cCceeeEEE
Q 021550 188 ---DLPQPWLAIPSAKKMLKQDGILCSFSPCI---------------EQVQRSCESLRL-NFTDIRTFE 237 (311)
Q Consensus 188 ---d~~~~~~~l~~~~~~LkpgG~lv~~~~~~---------------~~~~~~~~~l~~-~f~~~~~~e 237 (311)
+.++...+++++.++|+|||.+++..+.. ....++.+.+.+ +|..++..+
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 45677789999999999999999754321 123445556655 677665444
No 74
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=2.4e-12 Score=116.83 Aligned_cols=133 Identities=20% Similarity=0.128 Sum_probs=97.5
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..++..+|.+|||+|||+|.++..++.. +...|+++|+++.++..++......+...++.+..+|+...++ .
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~--- 187 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-L--- 187 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-c---
Confidence 455666567899999999999999999887 3457999999999887655433333323358999999876544 3
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec------------CCH-----------HHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS------------PCI-----------EQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~------------~~~-----------~~~~~~~~~l~~-~f 230 (311)
+.||+|++ +..++..++.++.+.|+|||.+++-. |.. .....+...|.+ +|
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF 267 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF 267 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence 78999986 44678889999999999999998631 100 123456667766 78
Q ss_pred ceeeEEEe
Q 021550 231 TDIRTFEI 238 (311)
Q Consensus 231 ~~~~~~e~ 238 (311)
..++..+.
T Consensus 268 ~~i~~~~~ 275 (322)
T PRK15068 268 KDVRIVDV 275 (322)
T ss_pred ceEEEEeC
Confidence 88776654
No 75
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=3.1e-12 Score=115.09 Aligned_cols=133 Identities=16% Similarity=0.067 Sum_probs=94.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..++..+|++|||+|||+|.++..++.. +...|+++|.|+.++..++..-...+....+.+...++.+....
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---- 186 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---- 186 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC----
Confidence 556667778899999999999999888876 34689999999999876543322222233477888877643322
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC------------CH-----------HHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP------------CI-----------EQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~------------~~-----------~~~~~~~~~l~~-~f 230 (311)
..||+|++ +.+++..+|.++.+.|+|||.|++-.. .. .....+...+++ +|
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence 57999985 457888899999999999999986311 00 023455566666 78
Q ss_pred ceeeEEEe
Q 021550 231 TDIRTFEI 238 (311)
Q Consensus 231 ~~~~~~e~ 238 (311)
.+++....
T Consensus 267 ~~V~i~~~ 274 (314)
T TIGR00452 267 ENFRILDV 274 (314)
T ss_pred eEEEEEec
Confidence 88876543
No 76
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.44 E-value=2.2e-12 Score=108.42 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=88.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--------
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-------- 173 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-------- 173 (311)
....+.++.+|||+|||+|.++..+++...+.++|+++|+++.+ ...+ +.+...|+.+..
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHH
Confidence 34567899999999999999999999887667899999999864 1223 778888886422
Q ss_pred CCCcCCCCccEEEecCCC----------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 174 FPDEFSGLADSIFLDLPQ----------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~----------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
++. ++||+|+++.+. .+.++..+.+.|+|||.+++.....+.+.++...++..|...
T Consensus 94 ~~~---~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~ 166 (188)
T TIGR00438 94 VGD---DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKV 166 (188)
T ss_pred hCC---CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceE
Confidence 222 579999986421 146889999999999999986666666777777776655333
No 77
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.1e-12 Score=115.00 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.++.+|||+|||+|..+..+++.+ .+..+++++|+|+.|++.|++++...+..++++++.+|+...++ ..+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----CCCCE
Confidence 4578899999999999999888854 46789999999999999999999887776679999999875332 45898
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|++.. + ....+++++.+.|+|||.|++..
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 87532 1 23468999999999999998853
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=5.5e-12 Score=112.80 Aligned_cols=122 Identities=25% Similarity=0.267 Sum_probs=96.1
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+.+|||+|||+|.+++.++... +..+|+++|+++++++.|++|+..+++.+++++..+|+.+ .++. ..||+|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~---~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG---QKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC---CCccEEEEC
Confidence 3699999999999999999885 5689999999999999999999988887669999999873 4443 479999998
Q ss_pred CCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEE
Q 021550 189 LPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTF 236 (311)
Q Consensus 189 ~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~ 236 (311)
+|- | ..++..+.+.|+|||.+++-.. ..|...+.+.+.. +|.+++..
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~~q~~~~~~~~~~~~~~~~~~~~ 268 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-NWQQKSLKELLRIKFTWYDVENG 268 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHhcCCCceeEEe
Confidence 751 1 1357788899999999986444 4556666666663 57665544
No 79
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.4e-12 Score=110.14 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..++++ +.+|+++|+++.+++.++++....++. +.+...|+....++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~--- 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN--- 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc---
Confidence 3666777777789999999999999999986 479999999999999999988877764 67777777543332
Q ss_pred CCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++||+|++... ....+++.+.+.|+|||.+++.
T Consensus 93 -~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 -EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999975422 2346899999999999996554
No 80
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.43 E-value=8.3e-12 Score=115.10 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=102.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.+++.++... +..+|+++|+|+++++.|++|+..++. ++++.++|+.+..++. .++||+|
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~--~~~FDLI 323 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPS--EGKWDII 323 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcccccc--CCCccEE
Confidence 3466799999999999999998774 578999999999999999999988774 4999999986433322 1579999
Q ss_pred EecCCC----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceee
Q 021550 186 FLDLPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 186 ~~d~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
++|+|- | ..++..+.+.|+|||.+++... ..|...+.+.+.+ +|..++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FDQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-ccHHHHHHHHHHHCCCcEEE
Confidence 999872 1 1356667789999999886554 4677788888877 687766
Q ss_pred EEEeeceeeEEe
Q 021550 235 TFEILLRTYEIR 246 (311)
Q Consensus 235 ~~e~~~r~~~v~ 246 (311)
....+.....+.
T Consensus 403 v~kDl~G~dR~v 414 (423)
T PRK14966 403 TLPDLAGLDRVT 414 (423)
T ss_pred EEEcCCCCcEEE
Confidence 655544444433
No 81
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1.6e-12 Score=114.64 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=88.5
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
....++..+.+.++.+|||+|||+|.++..+++.. +.++|+++|+++.+++.|++++ .+ +.+..+|+... .+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~~-~~ 90 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PD-CQFVEADIASW-QP 90 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhcc-CC
Confidence 34457788888889999999999999999999885 5789999999999999998763 23 78888998642 23
Q ss_pred CcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecC
Q 021550 176 DEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 176 ~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. .+||+|+++ .+++..++.++.+.|+|||.+++..+
T Consensus 91 ~---~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 P---QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred C---CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3 689999864 34667899999999999999988654
No 82
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=1.3e-11 Score=107.18 Aligned_cols=111 Identities=32% Similarity=0.455 Sum_probs=91.8
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+...++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++...+...++.+...|+....++.
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-- 119 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD-- 119 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC--
Confidence 356666777889999999999999999998863368999999999999999999876655556899999987644444
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++ +.+++..++..+.+.|+|||.+++.
T Consensus 120 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 120 -NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred -CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 68999975 3557778999999999999998864
No 83
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=2.8e-12 Score=111.90 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.++.+|||+|||+|.++..+++.+ .+..+++++|+++++++.|++++...+...+++++.+|+....+ ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----CCCCE
Confidence 3578899999999999999999875 35789999999999999999998876655568999999975433 34788
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|++.. + +...+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 76532 1 345789999999999999998754
No 84
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=2.8e-12 Score=122.88 Aligned_cols=107 Identities=26% Similarity=0.244 Sum_probs=90.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+++++.|+++.. +...++++..+|+....+++
T Consensus 257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~-- 330 (475)
T PLN02336 257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD-- 330 (475)
T ss_pred HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC--
Confidence 46677778889999999999999999999875 5799999999999999998865 33445899999998666665
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++||+|++ +.+++..++.++.++|+|||.+++.
T Consensus 331 -~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 331 -NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred -CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 78999985 4568889999999999999999875
No 85
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.42 E-value=4.3e-12 Score=120.30 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=108.1
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----C
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----F 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~ 174 (311)
.++.++.+.++.+|||+|||+|.+++.+++. ..+|+++|+++++++.|++|+..+++.+ +++..+|+.+.. +
T Consensus 288 ~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 288 RALEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhh
Confidence 4566777788999999999999999999987 3799999999999999999999888876 999999986411 2
Q ss_pred CCcCCCCccEEEecCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceeeEEee
Q 021550 175 PDEFSGLADSIFLDLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~~v~~ 247 (311)
.. +.||+|++|+|.. ...+..+.+ ++|++.+++.+.......++......+ ...++.++.+.+.+|++.
T Consensus 364 ~~---~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 364 AL---GGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred hc---CCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 22 5799999999843 455655544 689888887665555444444443444 567788888888888874
No 86
>PLN03075 nicotianamine synthase; Provisional
Probab=99.41 E-value=3.3e-12 Score=113.01 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=86.0
Q ss_pred cCCCCCCEEEEEcccccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 104 LELVPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
....++++|+|+|||+|.++ +.++....++++++++|+++++++.|++++.. .++.++++|..+|+.+. .+. .+.
T Consensus 119 ~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~--l~~ 195 (296)
T PLN03075 119 HVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TES--LKE 195 (296)
T ss_pred hhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccc--cCC
Confidence 33347799999999987554 44454556889999999999999999999964 78888899999999752 221 167
Q ss_pred ccEEEecC------CChhhHHHHHHhcccCCcEEEEec
Q 021550 182 ADSIFLDL------PQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 182 ~D~V~~d~------~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
||+||++. +++..+++++.+.|+|||.+++-+
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999754 577889999999999999999754
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.1e-11 Score=110.20 Aligned_cols=127 Identities=28% Similarity=0.290 Sum_probs=96.8
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
......++.+|||+|||+|.++..++... +..+++++|+++.+++.|++++. .....++.+..+|+.. .++. +.
T Consensus 102 ~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~-~~~~---~~ 175 (275)
T PRK09328 102 EALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE-PLPG---GR 175 (275)
T ss_pred HhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC-cCCC---Cc
Confidence 34455678899999999999999999886 57899999999999999999987 3333459999999863 3433 68
Q ss_pred ccEEEecCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c
Q 021550 182 ADSIFLDLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N 229 (311)
Q Consensus 182 ~D~V~~d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~ 229 (311)
||+|++++|-. ..++.++.+.|+|||.+++-.. ..+...+...+.+ +
T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~~~~~~~~l~~~g 254 (275)
T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQGEAVRALLAAAG 254 (275)
T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chHHHHHHHHHHhCC
Confidence 99999987621 2356777799999999987443 3455666667766 6
Q ss_pred CceeeE
Q 021550 230 FTDIRT 235 (311)
Q Consensus 230 f~~~~~ 235 (311)
|.+++.
T Consensus 255 f~~v~~ 260 (275)
T PRK09328 255 FADVET 260 (275)
T ss_pred CceeEE
Confidence 765554
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.41 E-value=9.1e-12 Score=113.69 Aligned_cols=136 Identities=20% Similarity=0.230 Sum_probs=99.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+......+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..+++. .++...|+.. .. .
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~-~~-~-- 259 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFS-DI-K-- 259 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccc-cc-C--
Confidence 45666665556799999999999999999884 6679999999999999999999988864 4667777753 22 2
Q ss_pred CCCccEEEecCCC----------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 179 SGLADSIFLDLPQ----------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 179 ~~~~D~V~~d~~~----------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
+.||+|++++|- .+.++..+.+.|+|||.++++....-... ..+.+.|...+++. -...|.+.
T Consensus 260 -~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~---~~l~~~Fg~~~~la-~~~~f~v~ 332 (342)
T PRK09489 260 -GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DLLDETFGSHEVLA-QTGRFKVY 332 (342)
T ss_pred -CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH---HHHHHHcCCeEEEE-eCCCEEEE
Confidence 689999998872 25688999999999999987654332222 33334465555443 22445554
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.40 E-value=8.1e-12 Score=109.53 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=90.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.|++|+..++ +++..+|+.+ .++....+.||+|++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~-~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD-ALPTALRGRVDILAA 159 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh-hcchhcCCCEeEEEE
Confidence 34689999999999999999875 45799999999999999999998765 4678888863 222111257999999
Q ss_pred cCCCh-------------------------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 188 DLPQP-------------------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 188 d~~~~-------------------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
|+|.. ..++..+.+.|+|||.+++... .++...+...+++ +|.
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~~~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-ERQAPLAVEAFARAGLI 234 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-cchHHHHHHHHHHCCCC
Confidence 98721 1456677899999999986544 4567788888877 553
No 90
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=2.6e-11 Score=108.64 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=81.6
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
+..+...++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...++ + +++...|+....+ . +
T Consensus 113 ~~~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~-~---~ 183 (287)
T PRK12335 113 LEAVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASI-Q---E 183 (287)
T ss_pred HHHhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccc-c---C
Confidence 33334344569999999999999999886 47999999999999999999988877 3 8888888865334 3 6
Q ss_pred CccEEEecC-------CChhhHHHHHHhcccCCcEEEEe
Q 021550 181 LADSIFLDL-------PQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 181 ~~D~V~~d~-------~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+||+|++.. .....++.++.+.|+|||+++++
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 899997542 23346899999999999996654
No 91
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.39 E-value=4.9e-12 Score=106.53 Aligned_cols=113 Identities=27% Similarity=0.432 Sum_probs=94.2
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCcCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~~~~~~D~V~~ 187 (311)
.+||||||.|.++..+|... |+..++|+|++...+..|.+.+...++.| +.++.+|+.. ..+++ +++|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~---~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP---GSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT---TSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC---CchheEEE
Confidence 89999999999999999985 89999999999999999999999999987 9999999874 12344 78999999
Q ss_pred cCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 188 DLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
+.|+|| .++..+.+.|+|||.|.+.+...+....+.+.+..
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 999997 58999999999999999999988888888888876
No 92
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=1.8e-11 Score=110.27 Aligned_cols=101 Identities=28% Similarity=0.340 Sum_probs=84.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
..+|||+|||+|.++..++... +..+|+++|+|+.+++.|++|+..+++.+++++..+|+.+ .++. ++||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~---~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPG---RRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCC---CCccEEEEC
Confidence 3689999999999999999875 6789999999999999999999998887679999999863 4443 579999998
Q ss_pred CCC----------------h--------------hhHHHHHHhcccCCcEEEEecC
Q 021550 189 LPQ----------------P--------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~~----------------~--------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|- | ..++..+.+.|+|||.+++-..
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 752 0 2457888899999999987443
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.39 E-value=6.6e-12 Score=120.47 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=99.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.|++|+..+++.+++.+..+|+.. .++. +.||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~---~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEK---QKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcC---CCccEEEE
Confidence 45799999999999999999875 5789999999999999999999988887779999999863 3443 68999999
Q ss_pred cCCC-----------------h--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeE
Q 021550 188 DLPQ-----------------P--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRT 235 (311)
Q Consensus 188 d~~~-----------------~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~ 235 (311)
|+|- | ..++..+.+.|+|||.+++-. ...|...+.+.+.+ +|..+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchHHHHHHHHHhcCCCceEE
Confidence 8761 1 124667888999999998643 34567777777776 6766665
Q ss_pred EEeec
Q 021550 236 FEILL 240 (311)
Q Consensus 236 ~e~~~ 240 (311)
...+.
T Consensus 292 ~~D~~ 296 (506)
T PRK01544 292 YKDLQ 296 (506)
T ss_pred EecCC
Confidence 54443
No 94
>PRK04457 spermidine synthase; Provisional
Probab=99.38 E-value=1.5e-11 Score=108.54 Aligned_cols=124 Identities=21% Similarity=0.148 Sum_probs=94.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++.. |..+++++|+++++++.|++++...+..++++++.+|+.+ .+.. ..++||+|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~-~l~~-~~~~yD~I 140 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE-YIAV-HRHSTDVI 140 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH-HHHh-CCCCCCEE
Confidence 3456799999999999999999886 6789999999999999999998665544569999999864 1221 11579999
Q ss_pred EecCCC---------hhhHHHHHHhcccCCcEEEEecC-CHHHHHHHHHHHhhcCce
Q 021550 186 FLDLPQ---------PWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLRLNFTD 232 (311)
Q Consensus 186 ~~d~~~---------~~~~l~~~~~~LkpgG~lv~~~~-~~~~~~~~~~~l~~~f~~ 232 (311)
++|..+ ..++++.+.+.|+|||.+++... .........+.+++-|..
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~ 197 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEG 197 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCC
Confidence 987532 14789999999999999997432 233455666677665653
No 95
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.38 E-value=1.7e-12 Score=112.76 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=96.4
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|....++..++...+..+|||+|++.|+.+++++..+++.++|+++|.+++..+.|++++...|+.++|+++.+|+.+ .
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e-~ 143 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP-V 143 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH-H
Confidence 444455555666667789999999999999999999877899999999999999999999999998889999999874 2
Q ss_pred CCCc-----CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 174 FPDE-----FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ~~~~-----~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++.. ..++||+||+|.. ....+++.+.+.|+|||.|++
T Consensus 144 L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 2211 0158999999875 334678889999999999986
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.2e-11 Score=108.28 Aligned_cols=121 Identities=29% Similarity=0.372 Sum_probs=93.5
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+|||+|||||.+++.++... +...|+++|+|+++++.|++|+..+++.+ +.++..|.. ..+. +.||+|++|+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf-~~~~----~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLF-EPLR----GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeecc-cccC----CceeEEEeCCC
Confidence 79999999999999999985 67899999999999999999999999844 666666765 3343 58999999987
Q ss_pred ----------------Ch--------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c-CceeeEEEe
Q 021550 191 ----------------QP--------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N-FTDIRTFEI 238 (311)
Q Consensus 191 ----------------~~--------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~-f~~~~~~e~ 238 (311)
+| ..++..+.+.|+|||.+++-.. .+|...+.+.+.. + |..+.....
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~~q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-LTQGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-CCcHHHHHHHHHhcCCceEEEEEec
Confidence 11 1467788999999999886544 4556667777766 5 444444444
Q ss_pred e
Q 021550 239 L 239 (311)
Q Consensus 239 ~ 239 (311)
.
T Consensus 265 ~ 265 (280)
T COG2890 265 L 265 (280)
T ss_pred C
Confidence 3
No 97
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.36 E-value=4e-12 Score=105.23 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=90.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++....+.+..+|.|+|||+|..|..|++++ |.+.++|+|.|++|++.|+.+ +.+ .+|..+|+.... ++
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~-p~--- 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWK-PE--- 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcC-CC---
Confidence 6677778888999999999999999999998 789999999999999999765 334 889999997522 33
Q ss_pred CCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 180 GLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 180 ~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|++|.| .|+....|..+...|.|||.+.+-.|..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 578998876 4677789999999999999999987744
No 98
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.36 E-value=5.3e-11 Score=102.26 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=87.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
++..+...++.+|||+|||+|.++..+++.....++++++|+++.+++.++++.. ...++.+..+|+.+..++.
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~--- 104 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED--- 104 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC---
Confidence 5556666688999999999999999999886323799999999999999998865 2334889999987654444
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.||+|++ +.+++..+++.+.+.|+|||.+++..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 68999875 45678889999999999999998753
No 99
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.34 E-value=4.4e-12 Score=105.77 Aligned_cols=136 Identities=24% Similarity=0.257 Sum_probs=102.6
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-----CCCCccE
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-----FSGLADS 184 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-----~~~~~D~ 184 (311)
.+|||||+|||..+.++++++ |.......|.++..+...+..+...++.|....+..|+....++-. ..+.||+
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 369999999999999999998 7788999999999988888888888888867778888886434331 2258999
Q ss_pred EEe-cC------CChhhHHHHHHhcccCCcEEEEecCCH-------HHHHHHHHHHhh-----cCceeeEEEeeceeeEE
Q 021550 185 IFL-DL------PQPWLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL-----NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 185 V~~-d~------~~~~~~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~-----~f~~~~~~e~~~r~~~v 245 (311)
||+ |+ .....++..+.+.|++||.|++|.|+. +.-..+-..|+. |.++++.++.+.+....
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 984 22 233457889999999999999999965 456777778876 35555544444444444
Q ss_pred e
Q 021550 246 R 246 (311)
Q Consensus 246 ~ 246 (311)
.
T Consensus 186 ~ 186 (204)
T PF06080_consen 186 E 186 (204)
T ss_pred c
Confidence 3
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=1.9e-11 Score=108.75 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=85.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.++.+|||+|||+|.++..+++.+... ..++++|+|+.+++.|+++. .+ +.+..+|+...++++ ++||+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp~~~---~sfD~ 154 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLPFAD---QSLDA 154 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCCCcC---CceeE
Confidence 455789999999999999998876322 47999999999999998652 23 788889987666766 78999
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
|+.... + ..+.++.++|+|||.+++..|....+.++.+.+
T Consensus 155 I~~~~~-~-~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 155 IIRIYA-P-CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EEEecC-C-CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 986433 2 357899999999999999988776665555544
No 101
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.8e-11 Score=110.27 Aligned_cols=126 Identities=29% Similarity=0.429 Sum_probs=101.0
Q ss_pred CCceeeecccHH--HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 87 HRTQILYIADIS--FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 87 ~~~~~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
+....++..+.+ +....+++.||.+|||+++++|+-|.++++.+.+. ..|+++|+++..++..++|+.+.|+.+ +.
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~ 211 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VI 211 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eE
Confidence 344555655544 35578899999999999999999999999998653 456999999999999999999999988 88
Q ss_pred EEEecCCCC--CCCCcCCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGVRDIQGQ--GFPDEFSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~~D~~~~--~~~~~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+...|.... .+.. .+.||.|++|.|+. +++|..+.++|||||.|+ |+.
T Consensus 212 ~~~~d~~~~~~~~~~--~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV-YST 288 (355)
T COG0144 212 VVNKDARRLAELLPG--GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV-YST 288 (355)
T ss_pred EEecccccccccccc--cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence 888887532 1222 03599999998843 367999999999999998 877
Q ss_pred CH
Q 021550 215 CI 216 (311)
Q Consensus 215 ~~ 216 (311)
|.
T Consensus 289 CS 290 (355)
T COG0144 289 CS 290 (355)
T ss_pred cC
Confidence 66
No 102
>PRK06922 hypothetical protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=118.49 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC--CCCcC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--FPDEF 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~ 178 (311)
...++..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.|+++....+. +++++.+|+...+ +++
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fed-- 485 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEK-- 485 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCC--
Confidence 345566678999999999999998888875 679999999999999999988765442 3788889986533 444
Q ss_pred CCCccEEEecCC------------------ChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLP------------------QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~------------------~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++||+|+++.+ +...+++++.++|||||.+++...
T Consensus 486 -eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 486 -ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 78999986421 235789999999999999998754
No 103
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.33 E-value=4e-12 Score=108.37 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----cEEEEEecCCCCCCCCcCCCCcc
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-----FVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-----~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
|.+|||+|||+|.++..||+. ++.|+|+|.++++++.|++........+ ++++...|++. .. +.||
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~--~~----~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG--LT----GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--cc----cccc
Confidence 478999999999999999998 5999999999999999999844332222 24455555542 22 5699
Q ss_pred EEEe-----cCCChhhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFL-----DLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+|++ +..+|.++++.+.+.|+|+|.+++-.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 9985 56788999999999999999998743
No 104
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=4.1e-11 Score=106.94 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=97.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C--CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V--SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~--~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
.+.+||++|||.|..+..++++. +..+|+++|+++++++.|++++...+ . +.+++++.+|+.. .+.. ..+.||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-~l~~-~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-FVAE-TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH-HHhh-CCCccc
Confidence 45799999999999999998762 45799999999999999999886532 1 4569999999874 2221 126899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcCceeeEEEee
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
+|++|.++| .++++.+.+.|+|||.+++.... .+.+..+.+.+++-|.....+...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~ 221 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAA 221 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeE
Confidence 999987655 35788999999999999986432 244556666666667776665543
No 105
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.33 E-value=2.4e-11 Score=109.94 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..++..++.+|||+|||+|.++..++++. |..+++++|. +.+++.+++++...++.++++++.+|+.+..++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 347777888889999999999999999999996 7789999997 789999999999999888899999998754443
Q ss_pred CCCCccEEEe-----cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFL-----DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.+|+|++ +.++. ..+++++.+.|+|||++++..
T Consensus 215 ---~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 215 ---EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred ---CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3698764 22322 368999999999999999874
No 106
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.32 E-value=2e-11 Score=109.00 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=109.3
Q ss_pred eeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cC
Q 021550 91 ILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DI 169 (311)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~ 169 (311)
.+.|..+..++.++.+++|+.|||--||||++.+.+.-. +++++|.|++..|++-|+.|++..++.+ ..+... |+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da 255 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA 255 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence 355666667889999999999999999999999886654 6899999999999999999999998877 655555 99
Q ss_pred CCCCCCCcCCCCccEEEecCCC--------------hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeE
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQ--------------PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRT 235 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~--------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~ 235 (311)
...++++ ..+|.|+.|+|- ..++++.+.+.|++||++++..|. .........+|.-+..
T Consensus 256 ~~lpl~~---~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~v~~~ 328 (347)
T COG1041 256 TNLPLRD---NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFKVLGR 328 (347)
T ss_pred ccCCCCC---CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHhhcCceEEEE
Confidence 8877776 579999999982 136899999999999999998882 2222222236776666
Q ss_pred EEee
Q 021550 236 FEIL 239 (311)
Q Consensus 236 ~e~~ 239 (311)
+..+
T Consensus 329 ~~~~ 332 (347)
T COG1041 329 FTMR 332 (347)
T ss_pred EEEe
Confidence 6555
No 107
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.32 E-value=3.1e-11 Score=114.20 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=102.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE- 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~- 177 (311)
.++..+.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ ++++.+|+.+ .++..
T Consensus 283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~-~l~~~~ 357 (431)
T TIGR00479 283 RALEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLET-VLPKQP 357 (431)
T ss_pred HHHHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHH-HHHHHH
Confidence 3556667788899999999999999999987 3689999999999999999999988865 9999999864 11110
Q ss_pred -CCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c--CceeeEEEeeceeeEE
Q 021550 178 -FSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTDIRTFEILLRTYEI 245 (311)
Q Consensus 178 -~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~--f~~~~~~e~~~r~~~v 245 (311)
....||+|++|+|.. ..+++.+. .++|++.+++.+. ...+.+-...|.+ + ...+..++.+...+|+
T Consensus 358 ~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~-p~tlard~~~l~~~gy~~~~~~~~DmFP~T~Hv 430 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCN-PATLARDLEFLCKEGYGITWVQPVDMFPHTAHV 430 (431)
T ss_pred hcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCC-HHHHHHHHHHHHHCCeeEEEEEEeccCCCCCCC
Confidence 014699999999843 45555544 4889887765444 3445555555554 4 4556666666665554
No 108
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=3e-11 Score=112.30 Aligned_cols=119 Identities=20% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCC--CCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQ--GFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~--~~~~~~~~~~D 183 (311)
.++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.|++|+..+++. ++++++.+|+.+. .+.. ..+.||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCC
Confidence 46889999999999998776643 4679999999999999999999999985 3599999998741 1110 015799
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
+||+|+|.. ..++..+.++|+|||.+++++-+ .-....+.+.+.+
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 999999842 13445678999999999875422 1223444444443
No 109
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.31 E-value=2.4e-11 Score=101.19 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=81.7
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..++..++.++||+|||.|..+++||++ +..|+++|.|+..++.+++.+...+++ ++....|+....++
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~--- 92 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP--- 92 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T---
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc---
Confidence 3666677777889999999999999999998 689999999999999999888887776 89999999765554
Q ss_pred CCCccEEEec-------CCChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLD-------LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d-------~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||+|++. .+....+++.+...++|||++++.
T Consensus 93 -~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 93 -EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 579998742 223345789999999999998763
No 110
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=1e-12 Score=98.57 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=61.5
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-----
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL----- 187 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~----- 187 (311)
||+|||+|.++..+++.. +..+++++|+|+.+++.|++++...+..+ ......+..+. +.....++||+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDL-FDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCCh-hhcccccccceehhhhhHh
Confidence 799999999999999996 68999999999999999998888776544 44444444321 11111158999985
Q ss_pred cCCChhhHHHHHHhcccCCcEE
Q 021550 188 DLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 188 d~~~~~~~l~~~~~~LkpgG~l 209 (311)
+.++...+++++.+.|+|||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 4567788999999999999986
No 111
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.30 E-value=4.3e-12 Score=95.53 Aligned_cols=91 Identities=25% Similarity=0.400 Sum_probs=70.5
Q ss_pred EEEEcccccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-
Q 021550 112 VLESGTGSGSLTTSLARAV--APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD- 188 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d- 188 (311)
|||+|||+|..+..+++.+ ++..+++++|+++++++.++++....+. .+++.+.|+.+..... +.||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~---~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD---GKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS---SSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC---CCeeEEEEcC
Confidence 7999999999999999986 3347999999999999999999887665 3899999997643333 689999972
Q ss_pred C-----C--ChhhHHHHHHhcccCCc
Q 021550 189 L-----P--QPWLAIPSAKKMLKQDG 207 (311)
Q Consensus 189 ~-----~--~~~~~l~~~~~~LkpgG 207 (311)
. . ....+++++.+.|+|||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 2 1 12368899999999998
No 112
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.29 E-value=4.3e-11 Score=100.96 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
.++.+|||+|||+|.+++.++.+ ...+|+++|.++++++.+++|++.+++.+ +.++.+|+.. .++. ....||+||
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~-~l~~-~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALS-FLAQ-PGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHH-HHhh-cCCCceEEE
Confidence 46789999999999999876555 25799999999999999999999988765 9999999864 2221 114699999
Q ss_pred ecCCChhhHH----HHHHh--cccCCcEEEEecC
Q 021550 187 LDLPQPWLAI----PSAKK--MLKQDGILCSFSP 214 (311)
Q Consensus 187 ~d~~~~~~~l----~~~~~--~LkpgG~lv~~~~ 214 (311)
+|+|-...+. +.+.. +|+|++.+++-.+
T Consensus 127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9999433333 33333 3577887776433
No 113
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.29 E-value=3.5e-11 Score=104.45 Aligned_cols=102 Identities=23% Similarity=0.246 Sum_probs=83.5
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. .++.+..+|+....+++ ++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~---~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLED---SSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCC---CceeEEE
Confidence 345799999999999999999885 67889999999999999887653 24788999988655555 7899998
Q ss_pred ecC-----CChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 187 LDL-----PQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 187 ~d~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
++. +++..++.++.+.|+|||.+++..+...
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 643 4677899999999999999998665443
No 114
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.29 E-value=4.1e-11 Score=108.69 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=101.0
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..++...++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++++..+++.+ +++..+|+.+..... .
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~--~ 238 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQ--G 238 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhc--C
Confidence 344554446789999999999999999985 4799999999999999999999999854 999999997422111 1
Q ss_pred CCccEEEecCCChh--hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEee
Q 021550 180 GLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 180 ~~~D~V~~d~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~ 247 (311)
+.||+|++|+|..- ..+..++..++|++.+++.+........ ...+.. ....+..++.+...+|++.
T Consensus 239 ~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd-~~~l~~y~~~~~~~~DmFP~T~HvE~ 308 (315)
T PRK03522 239 EVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKD-LAHLPGYRIERVQLFDMFPHTAHYEV 308 (315)
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhH-HhhccCcEEEEEEEeccCCCCCeEEE
Confidence 46999999988431 2333444446777777655544443333 344432 3577778888888888874
No 115
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=1.5e-10 Score=101.66 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=94.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...+..-.|.+|||||||+|+.+..++.+ ++..|+|+|.++......+..-...|....+......+++ ++. .
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp~--~ 180 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LPN--L 180 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--ccc--c
Confidence 444554457899999999999999999888 5678999999988766544333333433323333233332 333 1
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe------------cC-----------CHHHHHHHHHHHhh-cC
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF------------SP-----------CIEQVQRSCESLRL-NF 230 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~------------~~-----------~~~~~~~~~~~l~~-~f 230 (311)
+.||+||+ +..+|...|.++...|++||.+++- .| +...+..+..+|++ +|
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF 260 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGF 260 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCC
Confidence 78999985 6779999999999999999999861 11 11246667778877 89
Q ss_pred ceeeEEEee
Q 021550 231 TDIRTFEIL 239 (311)
Q Consensus 231 ~~~~~~e~~ 239 (311)
.++++++..
T Consensus 261 ~~v~~v~~~ 269 (315)
T PF08003_consen 261 KDVRCVDVS 269 (315)
T ss_pred ceEEEecCc
Confidence 999887653
No 116
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.27 E-value=4.6e-11 Score=96.34 Aligned_cols=119 Identities=27% Similarity=0.320 Sum_probs=91.7
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE---
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF--- 186 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~--- 186 (311)
++|||+|||+|.+...|++.- =.+.++++|+++.+++.|+..+++.+.++.|+|.+.|+....+.. ++||+|.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~---~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc---cceeEEeecC
Confidence 499999999999999998872 346699999999999999999999999988999999998644444 6777764
Q ss_pred ------ecCCC----hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee
Q 021550 187 ------LDLPQ----PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 187 ------~d~~~----~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~ 233 (311)
+++.. +..++..+.+.|+|||++++.+ |.-...++++.+.. +|.-.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFEYL 201 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeEEE
Confidence 22221 1346788899999999999755 44446777777766 45433
No 117
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=4.2e-11 Score=111.12 Aligned_cols=102 Identities=24% Similarity=0.316 Sum_probs=83.0
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++..+++.++.+|||+|||+|.++..+++.. +.+|+++|+|+++++.|+++.. +. .+++...|... + +
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~--l-~-- 226 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD--L-N-- 226 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh--c-C--
Confidence 46778889999999999999999999999875 4799999999999999999874 33 27788888753 2 2
Q ss_pred CCCccEEEec-----CC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLD-----LP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d-----~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+.||.|++. .+ ....+++.+.++|+|||.+++.
T Consensus 227 -~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 227 -GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred -CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 689998742 22 2357899999999999999874
No 118
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.27 E-value=7.4e-11 Score=101.12 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=95.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~ 186 (311)
...+||||||.|.++..+|+. .|...++|+|+....+..|.+.+.+.++.| +.++..|+.. ..+.. .++.|-|+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~--~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIP--DGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCC--CCCeeEEE
Confidence 358999999999999999998 588999999999999999999999999875 9999999875 22222 15999999
Q ss_pred ecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 187 LDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 187 ~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
++.|||| .+++.+.+.|+|||.|.+-+...+....
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9999998 5899999999999999988887777666
No 119
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=1.1e-10 Score=96.32 Aligned_cols=105 Identities=24% Similarity=0.251 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++..+++.++++|||+|||+|.++..++++ ..+++++|+++.+++.+++++.. . .+++++.+|+.+..++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~~~~- 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFDLPK- 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCCccc-
Confidence 34778888899999999999999999999987 47999999999999999998754 2 34999999998655554
Q ss_pred CCCCccEEEecCCCh--hhHHHHHHhc--ccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQP--WLAIPSAKKM--LKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~--~~~l~~~~~~--LkpgG~lv~ 211 (311)
..+|.|+.|+|-. ...+..+... +.++|.+++
T Consensus 76 --~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 76 --LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred --cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 4699999998854 3455555543 336777765
No 120
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=6.1e-11 Score=97.85 Aligned_cols=126 Identities=24% Similarity=0.211 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.-..-.++||+|||.|.++..|+.+ ..+++++|+++..++.|++++.. .++ |++.+.|+. ..++. +.|
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~--~~~-V~~~~~dvp-~~~P~---~~F 107 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAG--LPH-VEWIQADVP-EFWPE---GRF 107 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TT-T---S---S-E
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCC--CCC-eEEEECcCC-CCCCC---CCe
Confidence 355566679999999999999999988 37899999999999999998764 444 999999997 45666 899
Q ss_pred cEEEec-----CC---ChhhHHHHHHhcccCCcEEEEecCCHH---------HHHHHHHHHhhcCceeeEEEe
Q 021550 183 DSIFLD-----LP---QPWLAIPSAKKMLKQDGILCSFSPCIE---------QVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d-----~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~---------~~~~~~~~l~~~f~~~~~~e~ 238 (311)
|+|++. +. +...++..+...|+|||.+++-+...+ -.+-+.+.+.+.+..++.++.
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 999853 21 234578999999999999998544332 133344455556776665554
No 121
>PRK05785 hypothetical protein; Provisional
Probab=99.23 E-value=1.4e-10 Score=100.09 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=73.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||+|||+|.++..+++.. ..+|+++|+|++|++.|++. ..+.++|+...++++ ++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d---~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD---KSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC---CCEEEEEe
Confidence 47899999999999999998875 47999999999999998863 124678887777776 89999985
Q ss_pred -----cCCChhhHHHHHHhcccCCcEEE
Q 021550 188 -----DLPQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 188 -----d~~~~~~~l~~~~~~LkpgG~lv 210 (311)
+.+++..++.++.++|||...++
T Consensus 117 ~~~l~~~~d~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 117 SFALHASDNIEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred cChhhccCCHHHHHHHHHHHhcCceEEE
Confidence 45688889999999999954333
No 122
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=100.93 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=104.6
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCC--CCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQG--QGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~--~~~~~ 176 (311)
-+....++.|.+|||.++|-|+.++..+++ ++.+|+++|.++..++.|.-|--..++. ..++++.+|+.+ ..+++
T Consensus 126 Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D 203 (287)
T COG2521 126 KVELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD 203 (287)
T ss_pred hhheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc
Confidence 345556778999999999999999998888 4559999999999999988764333332 247899999875 45665
Q ss_pred cCCCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCH-------HHHHHHHHHHhh-cCceeeEEEe
Q 021550 177 EFSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCI-------EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~-------~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
++||+|++|+|-. .++..+++++|+|||.++-|+... +....+.+.|++ +|..++..+.
T Consensus 204 ---~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 204 ---ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred ---cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehh
Confidence 8899999999843 467899999999999999886654 346677888888 8986665443
No 123
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.23 E-value=9e-11 Score=96.58 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=95.9
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE-EEEecCCCCC-CCCcCCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT-VGVRDIQGQG-FPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~-~~~~D~~~~~-~~~~~~~ 180 (311)
++.......|||+|||+|..-.+.-.. |..+|+.+|.++.|-+.|.+.++++...+ +. |+.++.++.+ +++ +
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d---~ 144 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLAD---G 144 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccccc---C
Confidence 334333446899999999876544322 67899999999999999999998876555 55 8899887633 455 8
Q ss_pred CccEEE-----ecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 181 LADSIF-----LDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 181 ~~D~V~-----~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
++|.|+ ++..++.+.|++..++|+|||++++......+..-+...+++.+.....++.+-..|...
T Consensus 145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd 215 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD 215 (252)
T ss_pred CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh
Confidence 999986 466789999999999999999999875544443333334433333222233444444433
No 124
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.22 E-value=1.9e-10 Score=106.72 Aligned_cols=139 Identities=11% Similarity=0.123 Sum_probs=101.6
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+++..++.+|||++||+|.+++.++.. ..+|+++|+++.+++.|++|++.+++.+ +++..+|+.+. ... ...
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~-~~~-~~~ 299 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKF-ATA-QMS 299 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHH-HHh-cCC
Confidence 34444446789999999999999999865 4789999999999999999999998865 99999998642 111 114
Q ss_pred CccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCceeeEEEeeceeeEEee
Q 021550 181 LADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 181 ~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~~v~~ 247 (311)
.||+||+|+|-. ..+++.+. .++|++.+++.+.... +.+=...|.. ....+..++.+....|++.
T Consensus 300 ~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~T-laRDl~~L~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 300 APELVLVNPPRRGIGKELCDYLS-QMAPKFILYSSCNAQT-MAKDIAELSGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred CCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHH-HHHHHHHhcCceEEEEEEeccCCCCCcEEE
Confidence 599999999843 23444454 4789888876655444 4444445532 3677788888888888764
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=99.21 E-value=3e-10 Score=102.89 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--H---hcCC-CCcEEEEEecCCCCCCCCcCCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--E---RTGV-SSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~g~-~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
...+||++|||.|..+..+++. .+..+|+++|+++++++.|++.. . .... +++++++.+|+.. .+.. ..+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~-fL~~-~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE-FLSS-PSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH-HHHh-cCCC
Confidence 3469999999999988888876 34579999999999999999631 1 1111 4569999999874 2221 1267
Q ss_pred ccEEEecCCCh----------hhHHHHHHhcccCCcEEEEecCCHHHH----HHHHHHHhhcCceeeEEEee
Q 021550 182 ADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFSPCIEQV----QRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 182 ~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~l~~~f~~~~~~e~~ 239 (311)
||+||+|.+++ .++++.+.+.|+|||.+++...+.... ..+...+++-|.....+...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 99999998776 347899999999999998865443322 33445555545455444444
No 126
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=104.82 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=114.2
Q ss_pred CCCCCCEEEE-EEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCcee-
Q 021550 15 CIKEGDLVIV-YERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQI- 91 (311)
Q Consensus 15 ~i~~GD~V~l-~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~- 91 (311)
.+|+||+|.+ +. ...||+|..|+.|.-.+|+- ++.+|.. .+|+|. |+..|.. +...+|.....
T Consensus 78 ~~k~GDrVgV~~~--------~~~Cg~C~~C~~G~E~~C~~-~~~~gy~---~~GGyaeyv~v~~~--~~~~iP~~~d~~ 143 (339)
T COG1064 78 GLKVGDRVGVGWL--------VISCGECEYCRSGNENLCPN-QKITGYT---TDGGYAEYVVVPAR--YVVKIPEGLDLA 143 (339)
T ss_pred cCCCCCEEEecCc--------cCCCCCCccccCcccccCCC-cccccee---ecCcceeEEEEchH--HeEECCCCCChh
Confidence 5899999999 66 44599999999998666653 3334443 345554 5555532 22333333211
Q ss_pred -eecccHH-----HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 92 -LYIADIS-----FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 92 -~~~~~~~-----~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
..|-..+ ..+...+++||++|+.+|+|. |.++.++|+.++ ++|+++|.+++..+.|++. |.+..+..
T Consensus 144 ~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd~~i~~ 217 (339)
T COG1064 144 EAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GADHVINS 217 (339)
T ss_pred hhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCcEEEEc
Confidence 0111111 134668899999999999995 779999999874 9999999999999998864 54432222
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...|.. .... +.+|+|+...+ ...++...+.|++||.+++..
T Consensus 218 ~~~~~~-~~~~----~~~d~ii~tv~--~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 218 SDSDAL-EAVK----EIADAIIDTVG--PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred CCchhh-HHhH----hhCcEEEECCC--hhhHHHHHHHHhcCCEEEEEC
Confidence 211111 1222 34999887666 558899999999999999864
No 127
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.20 E-value=6.8e-11 Score=108.86 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=116.6
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEc--cCCcEE-EEecCCHHHHhhhhcC---
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFS--NKGGFV-YLLAPTPELWTLVLSH--- 87 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~--~~~~~~-~~~~p~~~~~~~~~~~--- 87 (311)
+.+++||+|++.. .+.||.|..|+.|..+++. -...+|..... ..|++. |+..|... .....+.
T Consensus 74 ~~~~~GdrVvv~~--------~~~Cg~C~~C~~G~~~~C~-~~~~~g~~~~~~~~~G~~aEyv~vp~~~-~~~~~pd~~~ 143 (350)
T COG1063 74 RGFKVGDRVVVEP--------NIPCGHCRYCRAGEYNLCE-NPGFYGYAGLGGGIDGGFAEYVRVPADF-NLAKLPDGID 143 (350)
T ss_pred cCCCCCCEEEECC--------CcCCCCChhHhCcCcccCC-CccccccccccCCCCCceEEEEEecccc-CeecCCCCCC
Confidence 4589999999987 5669999999999988887 22223333221 134433 66666411 1111111
Q ss_pred --CceeeecccHH--HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 88 --RTQILYIADIS--FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 88 --~~~~~~~~~~~--~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
......|...+ .........++.+|+.+|||+ |.++..+++.. +..+|+++|.++++++.|++.. +.+- +
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~---g~~~-~ 218 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAG---GADV-V 218 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhC---CCeE-e
Confidence 12233344444 223444456666999999999 88888888886 5789999999999999998742 2111 1
Q ss_pred EEEEe-cCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 163 TVGVR-DIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 163 ~~~~~-D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..... +.....+.......+|++|-... ...++..+.++++|||.+++++...
T Consensus 219 ~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 219 VNPSEDDAGAEILELTGGRGADVVIEAVG-SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ecCccccHHHHHHHHhCCCCCCEEEECCC-CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 11111 11100111111136999886666 4458999999999999999876553
No 128
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.20 E-value=5.7e-11 Score=96.65 Aligned_cols=100 Identities=32% Similarity=0.399 Sum_probs=75.7
Q ss_pred HHHhcC-CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLE-LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+..+.. ..++.+|||+|||.|.++..+++. ..+++++|+++.+++. .. +.....+......+.
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~-~~~~~~~~~~~~~~~-- 76 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RN-VVFDNFDAQDPPFPD-- 76 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TT-SEEEEEECHTHHCHS--
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hh-hhhhhhhhhhhhccc--
Confidence 344443 578899999999999999988665 3599999999999887 11 333333332222344
Q ss_pred CCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 179 SGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.||+|++ +.+++..+|+.+.+.|+|||.+++..+..
T Consensus 77 -~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 -GSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp -SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred -cchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 78999985 56788899999999999999999987764
No 129
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=4.1e-10 Score=96.54 Aligned_cols=142 Identities=23% Similarity=0.292 Sum_probs=100.7
Q ss_pred CCCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEE
Q 021550 57 KPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHV 136 (311)
Q Consensus 57 ~~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v 136 (311)
++||....... .-+++.+|..+.|....-+ .+.......+..+||+|||+|..++.++..+ |.++|
T Consensus 110 ~~F~~l~l~~~-pgVlIPRpETEE~V~~Vid------------~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v 175 (328)
T KOG2904|consen 110 QPFGDLDLVCK-PGVLIPRPETEEWVEAVID------------ALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTV 175 (328)
T ss_pred CccCCceEEec-CCeeecCccHHHHHHHHHH------------HHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceE
Confidence 35665433322 3356777777776543211 1122223345689999999999999999998 48999
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC--cCCCCccEEEecCCC-----------------h-----
Q 021550 137 YTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD--EFSGLADSIFLDLPQ-----------------P----- 192 (311)
Q Consensus 137 ~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~~~~~D~V~~d~~~-----------------~----- 192 (311)
+++|.|+.++..|.+|+.+.++.+.+.+++.+.+...+.+ ...+.+|++++|+|- |
T Consensus 176 ~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALd 255 (328)
T KOG2904|consen 176 TAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALD 255 (328)
T ss_pred EEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhc
Confidence 9999999999999999999999998999876665422211 123789999998871 1
Q ss_pred ---------hhHHHHHHhcccCCcEEEEe
Q 021550 193 ---------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 193 ---------~~~l~~~~~~LkpgG~lv~~ 212 (311)
..++.-+.+.|+|||.+.+-
T Consensus 256 Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 256 GGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 13466778899999998764
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.19 E-value=8.8e-11 Score=117.12 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=90.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.+|.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..+++. ++++++.+|+.+ .+.. ..+.||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~-~l~~-~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA-WLKE-AREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH-HHHH-cCCCcCEE
Confidence 35789999999999999999875 4568999999999999999999999986 569999999864 1111 12689999
Q ss_pred EecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 186 FLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+|+|.. ..++..+.+.|+|||.+++. .+..++....+.+.+
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~-~~~~~~~~~~~~~~~ 670 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS-NNKRGFKMDEEGLAK 670 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE-eCCccCChhHHHHHh
Confidence 9999831 24677889999999998754 344444444444443
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.19 E-value=4.8e-10 Score=99.51 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=93.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+.+||++|||+|.++..+++.. +..+++++|+++++++.|++++...+. ..++++..+|... .+.. ..+.||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~-~l~~-~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK-FLAD-TENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH-HHHh-CCCCccE
Confidence 34599999999999998888763 457899999999999999998755321 2358888888753 1111 1168999
Q ss_pred EEecCCCh---------hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhhcCceeeEEEee
Q 021550 185 IFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 185 V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
|++|.+++ .++++.+.+.|+|||.+++.+.+. ..+..+.+.+++-|.....+...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~ 216 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTAN 216 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99987633 357889999999999999864432 33444445555568777766554
No 132
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.5e-10 Score=90.15 Aligned_cols=120 Identities=19% Similarity=0.300 Sum_probs=99.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
....++|||||||..+.++++..+|...+.+.|+++.+++...+.+..++.. ++.+..|+. ..+.. +++|++++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~-~~l~~---~~VDvLvf 116 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLL-SGLRN---ESVDVLVF 116 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHH-hhhcc---CCccEEEE
Confidence 3678999999999999999999998899999999999999999888877754 888999987 56666 89999999
Q ss_pred cCCCh---------------h-----------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCcee
Q 021550 188 DLPQP---------------W-----------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 188 d~~~~---------------~-----------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~~~ 233 (311)
++|-- | .++..+-.+|.|.|.+++..-..+..++++..++. +|...
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVR 189 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhccccee
Confidence 87610 1 35666778889999999887777888888888877 56543
No 133
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.18 E-value=1.3e-10 Score=103.65 Aligned_cols=113 Identities=29% Similarity=0.420 Sum_probs=95.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~ 176 (311)
.....+++.+|..|||+++++|+-+.+++..+.+.+.+++.|+++..+...+.++.+.|..+ +.+...|.... ....
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccc
Confidence 45677899999999999999999999999999878999999999999999999999999987 77777787642 1121
Q ss_pred cCCCCccEEEecCCCh---------------------------hhHHHHHHhcc----cCCcEEEEecCCH
Q 021550 177 EFSGLADSIFLDLPQP---------------------------WLAIPSAKKML----KQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~L----kpgG~lv~~~~~~ 216 (311)
..||.|++|.|+. .++|..+.+.+ +|||+++ |+.|.
T Consensus 155 ---~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv-YsTCS 221 (283)
T PF01189_consen 155 ---SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV-YSTCS 221 (283)
T ss_dssp ---TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE-EEESH
T ss_pred ---cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE-EEecc
Confidence 4699999998843 25789999999 9999998 88876
No 134
>PLN02366 spermidine synthase
Probab=99.18 E-value=8.5e-10 Score=99.16 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=91.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
..+.+||++|||.|.++..++++ .+..+|+.+|+++.+++.|++.+...+ + +++++++.+|+.. .+.....+.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~-~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE-FLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH-HHhhccCCCCC
Confidence 45689999999999999999877 234789999999999999999886532 2 3479999999863 11111116799
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecCC----HHHHHHHHHHHhhcC
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSPC----IEQVQRSCESLRLNF 230 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~~f 230 (311)
+|++|.+++ .++++.+.+.|+|||.+++-+.+ .+....+.+.+++-|
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 999988764 35789999999999999874332 344556666666666
No 135
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.18 E-value=1.9e-10 Score=95.72 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=83.9
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCc--------EEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTG--------HVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
..+.|..++.++.+++.++++.|||.-||+|.+.+..+....... +++++|+++++++.|++|+...++...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 345677777899999999999999999999999988877653222 389999999999999999999999888
Q ss_pred EEEEEecCCCCCCCCcCCCCccEEEecCCCh-------------hhHHHHHHhcccC
Q 021550 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP-------------WLAIPSAKKMLKQ 205 (311)
Q Consensus 162 v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~-------------~~~l~~~~~~Lkp 205 (311)
+.+.+.|+....+.. +.+|.|+.|+|-- ..+++.+.+.|++
T Consensus 90 i~~~~~D~~~l~~~~---~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 90 IDFIQWDARELPLPD---GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEEEE--GGGGGGTT---SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred eEEEecchhhccccc---CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999999998755444 7899999999821 1457788888888
No 136
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.17 E-value=9e-11 Score=103.69 Aligned_cols=103 Identities=18% Similarity=0.209 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcccccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHHh----cC----------------
Q 021550 106 LVPGCLVLESGTGSGS----LTTSLARAVAP----TGHVYTFDFHEQRAASAREDFER----TG---------------- 157 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~----~~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~~----~g---------------- 157 (311)
..++.+|+|+|||+|. +++.+++.... ..+|+++|+|+.+++.|++.+-. .+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 45556665432 47899999999999999975310 01
Q ss_pred ------CCCcEEEEEecCCCCCCCCcCCCCccEEEec-----C--CChhhHHHHHHhcccCCcEEEE
Q 021550 158 ------VSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-----L--PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 ------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-----~--~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+.+.|.+.|+.+..++. +.||+|++. . +....++.++.+.|+|||++++
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~---~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPL---GDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCcc---CCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 1235889999998655444 789999862 2 3445799999999999999996
No 137
>PLN02672 methionine S-methyltransferase
Probab=99.16 E-value=5.4e-10 Score=114.05 Aligned_cols=126 Identities=19% Similarity=0.196 Sum_probs=94.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---------------CcEEEEEecCCCCC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---------------SFVTVGVRDIQGQG 173 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---------------~~v~~~~~D~~~~~ 173 (311)
+.+|||+|||+|.+++.+++.. +..+|+++|+|+++++.|++|+..++++ ++++++++|+.. .
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~-~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLG-Y 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhh-h
Confidence 5689999999999999999985 5679999999999999999999876432 359999999874 3
Q ss_pred CCCcCCCCccEEEecCC-----------------Ch--------------------------hhHHHHHHhcccCCcEEE
Q 021550 174 FPDEFSGLADSIFLDLP-----------------QP--------------------------WLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~-----------------~~--------------------------~~~l~~~~~~LkpgG~lv 210 (311)
+... ...||+|+.|+| +| ..++..+.+.|+|||.++
T Consensus 197 ~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 197 CRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred cccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 3321 136999998877 11 134667778999999988
Q ss_pred EecCCHHHHHHHH-HHHhh-cCceeeEEEe
Q 021550 211 SFSPCIEQVQRSC-ESLRL-NFTDIRTFEI 238 (311)
Q Consensus 211 ~~~~~~~~~~~~~-~~l~~-~f~~~~~~e~ 238 (311)
+ .....|-+.+. +.+.+ +|...+.|..
T Consensus 276 l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 276 F-NMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred E-EECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 5 33455666666 46655 6777665544
No 138
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=99.16 E-value=3.7e-11 Score=76.27 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=37.9
Q ss_pred cCCCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceE
Q 021550 12 FTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV 63 (311)
Q Consensus 12 ~~~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~ 63 (311)
++++|++||+|.|.+++|+++.+.|.+|..++|++|.+.|+|+||++.|+.+
T Consensus 2 R~Gpf~~GdrVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 2 RRGPFRAGDRVQLTDPKGRKHTITLEPGGEFHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp ---S--TT-EEEEEETT--EEEEE--TT-EEEETTEEEEHHHHTT--TTEEE
T ss_pred CcCCCCCCCEEEEccCCCCeeeEEECCCCeEEcCccccchhheecCCCcEEe
Confidence 5789999999999999999999999999999999999999999999999876
No 139
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=99.16 E-value=5.2e-10 Score=99.35 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=107.9
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeec-ccceeeCcccccCCCCceEEccC-------------------------
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQN-RFGAFKHSDWIGKPFGSMVFSNK------------------------- 67 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~-~~G~~~~~~~iG~~~G~~~~~~~------------------------- 67 (311)
+.|++||+|+|..+.+..+++++.++..+.. ++|.|+.+++||++||.+++...
T Consensus 2 ~~I~~gd~Vil~~~~~~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~~~ 81 (299)
T PF04189_consen 2 SIIQEGDYVILRLPSGNMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEEEG 81 (299)
T ss_pred CCcCCCCEEEEEcCCCcEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccccc
Confidence 5799999999999999999999999998887 67889999999999997764321
Q ss_pred ---------------------------------------------------------------------------CcEEE
Q 021550 68 ---------------------------------------------------------------------------GGFVY 72 (311)
Q Consensus 68 ---------------------------------------------------------------------------~~~~~ 72 (311)
...+.
T Consensus 82 ~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~ft 161 (299)
T PF04189_consen 82 DDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKRFT 161 (299)
T ss_pred ccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhceEE
Confidence 56778
Q ss_pred EecCCHHH----HhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEE
Q 021550 73 LLAPTPEL----WTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTF 139 (311)
Q Consensus 73 ~~~p~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~v 139 (311)
+++|+... |....+.+..-+..+.+++|+.++++++|.+||.+-...|.++.++++++++.+.++.+
T Consensus 162 v~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~ 232 (299)
T PF04189_consen 162 VLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITL 232 (299)
T ss_pred EeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEE
Confidence 99999853 33334556677889999999999999999999999999999999999999988888775
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=4.1e-10 Score=108.01 Aligned_cols=111 Identities=25% Similarity=0.238 Sum_probs=86.0
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG- 171 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~- 171 (311)
.......++..+...++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++.. +...++.+...|+..
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSP 95 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEeccccc
Confidence 3334455777887778889999999999999999987 369999999999998876532 222348999999863
Q ss_pred -CCCCCcCCCCccEEEecCC-----C--hhhHHHHHHhcccCCcEEEEe
Q 021550 172 -QGFPDEFSGLADSIFLDLP-----Q--PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 -~~~~~~~~~~~D~V~~d~~-----~--~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+++. ++||+|+++.+ + ...++.++.+.|+|||.+++.
T Consensus 96 ~~~~~~---~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 96 DLNISD---GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccCCCC---CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 33444 78999986542 2 357899999999999999874
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.15 E-value=5.4e-10 Score=97.02 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=88.1
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+.++...+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.|++++...+. .+++...|+....
T Consensus 34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 333455666666778899999999999999888875 46899999999999999998876665 3777777775421
Q ss_pred -CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 -FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 -~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.||+|++ +.+++..++..+.+.|+|||.+++..+
T Consensus 109 ~~~~---~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 109 AEHP---GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhcC---CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 122 68999975 356777899999999999999987543
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=99.15 E-value=4.1e-10 Score=96.17 Aligned_cols=108 Identities=13% Similarity=0.139 Sum_probs=76.7
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+.+.|..++..+.. ....+.+|||+|||+|.+++.+++.+. +...|+++|+++.+++.|+++.. + +.+...
T Consensus 32 qFfTP~~iAr~~~i-~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~~ 104 (241)
T PHA03412 32 AFFTPIGLARDFTI-DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWINA 104 (241)
T ss_pred ccCCCHHHHHHHHH-hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEEc
Confidence 44455555432211 122467999999999999999988652 35699999999999999998742 2 778889
Q ss_pred cCCCCCCCCcCCCCccEEEecCCC-----------------hhhHHHHHHhcccCCcE
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLPQ-----------------PWLAIPSAKKMLKQDGI 208 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~~-----------------~~~~l~~~~~~LkpgG~ 208 (311)
|+....+ . ++||+||.|+|- ...++..+.+++++|+.
T Consensus 105 D~~~~~~-~---~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 105 DALTTEF-D---TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred chhcccc-c---CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9874333 2 689999999881 12467778886666664
No 143
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.5e-10 Score=93.39 Aligned_cols=120 Identities=23% Similarity=0.289 Sum_probs=96.6
Q ss_pred ceeeecccHHHHHHhcC--CCCCCEEEEEcccccHHHHHHHHHhCCCcEE-EEEeCCHHHHHHHHHHHHhcCC-------
Q 021550 89 TQILYIADISFVIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHV-YTFDFHEQRAASAREDFERTGV------- 158 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~--~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~g~------- 158 (311)
..+-.|...+.+++.+. ++||.+.||+|+|+|+++..++..+++.+.+ +++|.-++.++.+++|+...-.
T Consensus 61 ~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~ 140 (237)
T KOG1661|consen 61 LTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSK 140 (237)
T ss_pred eEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhh
Confidence 44555677777888888 8999999999999999999999888766654 9999999999999999876531
Q ss_pred --CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 159 --SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 159 --~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+.++.+|.. ..+++. ..||.|++....+ +..+.+.+.|++||.+++-
T Consensus 141 ~~~~~l~ivvGDgr-~g~~e~--a~YDaIhvGAaa~-~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 141 LKRGELSIVVGDGR-KGYAEQ--APYDAIHVGAAAS-ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred hccCceEEEeCCcc-ccCCcc--CCcceEEEccCcc-ccHHHHHHhhccCCeEEEe
Confidence 234778899998 566653 6899998875443 4678899999999999864
No 144
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.14 E-value=4.3e-10 Score=96.07 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=72.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCcEEEEEecCCCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-----------GVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~v~~~~~D~~~~~ 173 (311)
.+.++.+|||+|||.|..+..||++ +..|+++|+|+.+++.+.+..... .....+++.++|+.+..
T Consensus 31 ~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 31 GLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence 3357789999999999999999987 589999999999999864321100 00124888999997533
Q ss_pred CCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 174 FPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 174 ~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
... .+.||.|+ ++.+ ....+++.+.++|+|||.+++.
T Consensus 108 ~~~--~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 108 AAD--LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccc--CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 211 14678775 2232 2245899999999999975443
No 145
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.14 E-value=5.1e-10 Score=101.32 Aligned_cols=132 Identities=28% Similarity=0.457 Sum_probs=104.3
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-c
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~ 177 (311)
..+..++++||.+|||+++.+|+-|.++|..+...+.|++.|.+...+...+.|+.+.|+.+ ..+...|... +++ .
T Consensus 232 Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~e--f~~~~ 308 (460)
T KOG1122|consen 232 LPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGRE--FPEKE 308 (460)
T ss_pred ceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccc--ccccc
Confidence 45677889999999999999999999999999999999999999999999999999999987 6667777753 321 1
Q ss_pred CCCCccEEEecCCCh---------------------------hhHHHHHHhcccCCcEEEEecCCH---HHHHHHHHHHh
Q 021550 178 FSGLADSIFLDLPQP---------------------------WLAIPSAKKMLKQDGILCSFSPCI---EQVQRSCESLR 227 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~---------------------------~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~ 227 (311)
..++||.|++|.|+. .+.|..+.+.+++||+|| |+.|. +..+..+.+.-
T Consensus 309 ~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLV-YSTCSI~~~ENE~vV~yaL 387 (460)
T KOG1122|consen 309 FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLV-YSTCSITVEENEAVVDYAL 387 (460)
T ss_pred cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEE-EEeeecchhhhHHHHHHHH
Confidence 224899999998843 257888999999999998 87765 34444555544
Q ss_pred hcCceee
Q 021550 228 LNFTDIR 234 (311)
Q Consensus 228 ~~f~~~~ 234 (311)
..+.+.+
T Consensus 388 ~K~p~~k 394 (460)
T KOG1122|consen 388 KKRPEVK 394 (460)
T ss_pred HhCCceE
Confidence 4444444
No 146
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=2.7e-09 Score=87.16 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=81.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.-.|.+|+|+|||+|.+++..+-. +..+|+++|+++++++.+++|..+. . ..+++...|+.+ +. +.+|.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l-~-g~v~f~~~dv~~--~~----~~~dt 111 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL-L-GDVEFVVADVSD--FR----GKFDT 111 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh-C-CceEEEEcchhh--cC----Cccce
Confidence 3456789999999999999887765 5689999999999999999999883 3 349999999974 33 67899
Q ss_pred EEecCC-------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
++.|+| ..+.++..+++.-+ ++|+-.......+.+...+
T Consensus 112 vimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYsiH~a~~~~f~~~~~~ 157 (198)
T COG2263 112 VIMNPPFGSQRRHADRPFLLKALEISD-----VVYSIHKAGSRDFVEKFAA 157 (198)
T ss_pred EEECCCCccccccCCHHHHHHHHHhhh-----eEEEeeccccHHHHHHHHH
Confidence 999998 34567777776552 3354444334444444433
No 147
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.13 E-value=6e-10 Score=102.44 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=97.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-- 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-- 177 (311)
+++.++..+ .+|||++||+|.+++.+++.. .+|+++|+++++++.|++|+..+++.+ +++..+|+.+. ++..
T Consensus 190 v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~-~~~~~~ 263 (353)
T TIGR02143 190 ACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEF-TQAMNG 263 (353)
T ss_pred HHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHH-HHHHhh
Confidence 444444333 479999999999999998873 599999999999999999999999876 99999998641 1100
Q ss_pred ---C---------CCCccEEEecCCChhhHHHHH-HhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeecee
Q 021550 178 ---F---------SGLADSIFLDLPQPWLAIPSA-KKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRT 242 (311)
Q Consensus 178 ---~---------~~~~D~V~~d~~~~~~~l~~~-~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~ 242 (311)
. ...||+||+|+|. ..+...+ ..+++|++.+++.+.......++. .|.+ ....+..++.+...
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~-~L~~~Y~l~~v~~~DmFP~T 341 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKLVQAYERILYISCNPETLKANLE-QLSETHRVERFALFDQFPYT 341 (353)
T ss_pred ccccccccccccccCCCCEEEECCCC-CCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHH-HHhcCcEEEEEEEcccCCCC
Confidence 0 0238999999993 2222222 222347777776655544444444 4434 36777788888888
Q ss_pred eEEee
Q 021550 243 YEIRQ 247 (311)
Q Consensus 243 ~~v~~ 247 (311)
+|++.
T Consensus 342 ~HvE~ 346 (353)
T TIGR02143 342 HHMEC 346 (353)
T ss_pred CcEEE
Confidence 88874
No 148
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=4.7e-10 Score=108.26 Aligned_cols=133 Identities=20% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH--Hhc---CC-CCcEEEEEecCCCCCCCCcCCC
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF--ERT---GV-SSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~~~---g~-~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
.++++|||+|||+|..+..++++ .+..+|+++|+++++++.++++. ... .. +++++++.+|+.+ .+.. ..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~-~l~~-~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN-WLRK-LAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH-HHHh-CCC
Confidence 45689999999999999998875 22379999999999999999842 221 12 2469999999874 1211 126
Q ss_pred CccEEEecCCChh----------hHHHHHHhcccCCcEEEEecC----CHHHHHHHHHHHhh-cCceeeEEEeeceee
Q 021550 181 LADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRL-NFTDIRTFEILLRTY 243 (311)
Q Consensus 181 ~~D~V~~d~~~~~----------~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~-~f~~~~~~e~~~r~~ 243 (311)
+||+|++|.++++ ++++.+.+.|+|||.+++... ..+.+..+.+.+++ +| ...........|
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~ 449 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSF 449 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCc
Confidence 8999999987653 478899999999999997432 23445666677766 57 444444443333
No 149
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.13 E-value=7.6e-10 Score=95.23 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=80.4
Q ss_pred HHHhcC--CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE--LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~--~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++..+. ..++.+|||+|||+|.++..++.. ..+|+++|+++++++.|++++...+..+++.+..+|+... +
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~-- 117 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--C-- 117 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--C--
Confidence 444444 567899999999999999999875 4699999999999999999988777655599999998642 2
Q ss_pred CCCCccEEEe-----cCC--ChhhHHHHHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFL-----DLP--QPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~-----d~~--~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++||+|++ ..+ ....++.++.+.+++++.+. +.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~~ 159 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAPK 159 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECCC
Confidence 57999874 222 23457888888887665554 4443
No 150
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=6.5e-10 Score=93.36 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=99.1
Q ss_pred eeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 90 QILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 90 ~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
.+.-+.+.. ++..++.+..++++||+|.=+|+.++.+|.++.++++|+++|++++..+.+....+..|....|++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 333333433 4555667778899999999999999999999988999999999999999999999999999899999998
Q ss_pred CCC---CCCCCcCCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 169 IQG---QGFPDEFSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 169 ~~~---~~~~~~~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+ +-+.....+.||.+|+|.. ..+...+++.++|++||.|++
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 874 1112212278999999864 445789999999999999986
No 151
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=99.12 E-value=6.6e-09 Score=87.35 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=87.5
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.+.+|.+||-+|+.+|....+++..+++.|.|+++|+++...+..-..+++ ..| +-.+..|+....-....-+.+
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~N-IiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPN-IIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STT-EEEEES-TTSGGGGTTTS--E
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCc-eeeeeccCCChHHhhcccccc
Confidence 45689999999999999999999999999899999999999765544433332 224 888999998511111122689
Q ss_pred cEEEecCCChhh---HHHHHHhcccCCcEEEEec---------CCHHHHHHHHHHHhh-cCceee
Q 021550 183 DSIFLDLPQPWL---AIPSAKKMLKQDGILCSFS---------PCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 183 D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~---------~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
|+||.|...|.+ ++.++..+||+||.+++.. +..+-+..-.+.|++ +|.-++
T Consensus 145 DvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 145 DVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp EEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 999999877654 5678889999999988752 222445666677766 565444
No 152
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.12 E-value=1.1e-10 Score=97.36 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=76.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc--CCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~--~~~~~D~ 184 (311)
-+|.+|||+.||||.+++..+.+ ++.+|+.+|.++..+...++|++..+..+.+.+...|+.. .+... ....||+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~-~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK-FLLKLAKKGEKFDI 117 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH-HHHHHHHCTS-EEE
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH-HHHhhcccCCCceE
Confidence 47899999999999999998887 5789999999999999999999999988779999999753 12110 1268999
Q ss_pred EEecCCChh-----hHHHHHH--hcccCCcEEEEec
Q 021550 185 IFLDLPQPW-----LAIPSAK--KMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~~~~-----~~l~~~~--~~LkpgG~lv~~~ 213 (311)
||+|+|-.. .++..+. .+|+++|.+++-.
T Consensus 118 IflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 118 IFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 999998432 3455555 6888999998644
No 153
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=2.3e-09 Score=92.44 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+..+ +.+...|+.+..... .++||+|+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~--~~~~D~i~ 117 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKG--AKSFDVVT 117 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCC--CCCccEEE
Confidence 34789999999999999988875 3579999999999999999887766543 788888876432221 26899997
Q ss_pred e-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 187 L-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 187 ~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+ +.+++..++..+.+.|+|||.+++..+
T Consensus 118 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 5 356778899999999999999887543
No 154
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.12 E-value=7e-10 Score=91.39 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QG 173 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~ 173 (311)
|...|.++ +.||.+|||+|||.|.+..+|.+. .+...+|+|++++.+..+.++ | +.++++|+.. ..
T Consensus 3 D~~~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 3 DLQIIAEW--IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLAD 70 (193)
T ss_pred hHHHHHHH--cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhh
Confidence 33445554 468999999999999999998887 378999999999988777643 4 6789999975 23
Q ss_pred CCCcCCCCccEEEec-----CCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 174 FPDEFSGLADSIFLD-----LPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+++ ++||.||++ ...|..+|+++++ -|...++.-|+......-.+.+
T Consensus 71 f~d---~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 71 FPD---QSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred CCC---CCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHHH
Confidence 555 899999975 3467777777754 4667777777776666555555
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.11 E-value=1.1e-09 Score=93.83 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--------------CCcEEEEEecCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------SSFVTVGVRDIQ 170 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------~~~v~~~~~D~~ 170 (311)
.+.++.+|||+|||.|..+.+||++ +..|+++|+++.+++.+.. +.++ ...+++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 4467789999999999999999986 6899999999999998643 2222 234888999997
Q ss_pred CCCCCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEE
Q 021550 171 GQGFPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 171 ~~~~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+..... .+.||.|+ +..+ ....++..+.++|+|||.+++
T Consensus 108 ~l~~~~--~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 108 ALTAAD--LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCccc--CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 532221 14688876 2333 234689999999999986443
No 156
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=91.15 Aligned_cols=132 Identities=17% Similarity=0.115 Sum_probs=92.6
Q ss_pred CceeeecccHHHHHHhcCCCC--CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 88 RTQILYIADISFVIMYLELVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~--g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
+...|+.+.....++++++.. ..-|||||||+|..+..+... +..++++|+|+.|++.|.+.--+ -.++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~e------gdli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERELE------GDLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhhh------cCee
Confidence 344555666666777877766 678999999999988777654 47889999999999999873211 2467
Q ss_pred EecCCC-CCCCCcCCCCccEEEecCC------------Ch----hhHHHHHHhcccCCcEEEE--ecCCHHHHHHHHHHH
Q 021550 166 VRDIQG-QGFPDEFSGLADSIFLDLP------------QP----WLAIPSAKKMLKQDGILCS--FSPCIEQVQRSCESL 226 (311)
Q Consensus 166 ~~D~~~-~~~~~~~~~~~D~V~~d~~------------~~----~~~l~~~~~~LkpgG~lv~--~~~~~~~~~~~~~~l 226 (311)
.+|+-. .+|.+ +.||.||+-.. .| ..++..++..|++|++.|+ |--+..|...+.+.-
T Consensus 99 l~DMG~Glpfrp---GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a 175 (270)
T KOG1541|consen 99 LCDMGEGLPFRP---GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQA 175 (270)
T ss_pred eeecCCCCCCCC---CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHH
Confidence 778764 45666 89999874111 22 1467889999999999775 444556666666554
Q ss_pred hh-cCc
Q 021550 227 RL-NFT 231 (311)
Q Consensus 227 ~~-~f~ 231 (311)
.. +|.
T Consensus 176 ~~aGF~ 181 (270)
T KOG1541|consen 176 MKAGFG 181 (270)
T ss_pred HhhccC
Confidence 44 653
No 157
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.10 E-value=1.2e-09 Score=100.96 Aligned_cols=141 Identities=18% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
+...+... +.+|||++||+|.+++.+++. ..+|+++|+++.+++.|++|+..+++.+ +++..+|+.+. .+...
T Consensus 199 v~~~~~~~-~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~ 273 (362)
T PRK05031 199 ALDATKGS-KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGV 273 (362)
T ss_pred HHHHhhcC-CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhc
Confidence 44444432 357999999999999988887 3699999999999999999999998875 99999998641 01100
Q ss_pred -----------CCCCccEEEecCCChhhHHHHHHh-cccCCcEEEEecCCHHHHHHHHHHHhhc--CceeeEEEeeceee
Q 021550 178 -----------FSGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSPCIEQVQRSCESLRLN--FTDIRTFEILLRTY 243 (311)
Q Consensus 178 -----------~~~~~D~V~~d~~~~~~~l~~~~~-~LkpgG~lv~~~~~~~~~~~~~~~l~~~--f~~~~~~e~~~r~~ 243 (311)
....||+||+|+|-. .+-..+.+ +.+|++.+++.+.. ..+.+-...|.++ ...+..++.+.+.+
T Consensus 274 ~~~~~~~~~~~~~~~~D~v~lDPPR~-G~~~~~l~~l~~~~~ivyvSC~p-~tlarDl~~L~~gY~l~~v~~~DmFPqT~ 351 (362)
T PRK05031 274 REFNRLKGIDLKSYNFSTIFVDPPRA-GLDDETLKLVQAYERILYISCNP-ETLCENLETLSQTHKVERFALFDQFPYTH 351 (362)
T ss_pred ccccccccccccCCCCCEEEECCCCC-CCcHHHHHHHHccCCEEEEEeCH-HHHHHHHHHHcCCcEEEEEEEcccCCCCC
Confidence 012589999999942 22233322 22367776665544 3344444445443 56777788888888
Q ss_pred EEee
Q 021550 244 EIRQ 247 (311)
Q Consensus 244 ~v~~ 247 (311)
|++.
T Consensus 352 HvE~ 355 (362)
T PRK05031 352 HMEC 355 (362)
T ss_pred cEEE
Confidence 8774
No 158
>PLN02823 spermine synthase
Probab=99.09 E-value=2.1e-09 Score=97.66 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=95.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG---VSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g---~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...+||.+|+|.|..+..+++.. +..+|+.+|++++.++.|++++...+ .+++++++.+|+.. .+.. ..+.||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~-~L~~-~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA-ELEK-RDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH-HHhh-CCCCccE
Confidence 34799999999999999888763 45789999999999999999875432 24579999999875 2221 2268999
Q ss_pred EEecCCCh-----------hhHHH-HHHhcccCCcEEEEecCC------HHHHHHHHHHHhhcCceeeEEEe
Q 021550 185 IFLDLPQP-----------WLAIP-SAKKMLKQDGILCSFSPC------IEQVQRSCESLRLNFTDIRTFEI 238 (311)
Q Consensus 185 V~~d~~~~-----------~~~l~-~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~f~~~~~~e~ 238 (311)
||+|.++| .++++ .+.+.|+|||.+++...+ .+....+...+++-|..+..+..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~ 251 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTA 251 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99997654 24677 889999999999875432 23455666777766777666554
No 159
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.09 E-value=6.9e-10 Score=94.31 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.++.+|||+|||+|.++..+++.+ +..+++++|+|+++++.|+++.. + +.+.++|+.. ++++ ++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~-----~-~~~~~~d~~~-~~~~---~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP-----N-INIIQGSLFD-PFKD---NFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC-----C-CcEEEeeccC-CCCC---CCEEEE
Confidence 4567899999999999999998875 56899999999999999987632 2 6778888875 5655 789999
Q ss_pred Eec-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 186 FLD-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 186 ~~d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
++. .+ ....++.++.+.+ ++.+++
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEE
Confidence 853 22 2245677777776 445555
No 160
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.08 E-value=1.5e-09 Score=104.38 Aligned_cols=117 Identities=17% Similarity=0.224 Sum_probs=100.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~ 184 (311)
..+..+||||||.|.++..+|... |+..++|+|++...+..|.+.....++.| +.+...|+.. ..+++ +++|.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~---~sv~~ 420 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN---NSLDG 420 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc---ccccE
Confidence 346789999999999999999984 88999999999999999988888888877 8888877642 33555 78999
Q ss_pred EEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+++.|+|| .++..+.+.|+|||.|.+-+...+........+.+
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 999999998 58999999999999999888888888877777765
No 161
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=1.4e-09 Score=98.14 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=75.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCC-CCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFS-GLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~-~~~D~ 184 (311)
.++.+|||+|||+|..+..+++.+....+++++|+|++|++.|++++........+.++++|+.+ ..++.... ....+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 46789999999999999999998633578999999999999999987653322237778999874 22332100 11223
Q ss_pred EEecC-----C--ChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDL-----P--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~-----~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
++++. + +...+|+++.+.|+|||.+++-
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33221 1 2346799999999999999863
No 162
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.07 E-value=1.1e-09 Score=100.79 Aligned_cols=104 Identities=23% Similarity=0.173 Sum_probs=85.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCC--CcCCCCcc
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFP--DEFSGLAD 183 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~--~~~~~~~D 183 (311)
..|++||++.|=||.++.++|.. ++.+|+++|.|...++.|++|++.+|++ ..+.++++|+.+ -+. ...+..||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~-~l~~~~~~g~~fD 292 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK-WLRKAERRGEKFD 292 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH-HHHHHHhcCCccc
Confidence 34999999999999999988865 5669999999999999999999999985 458899999875 111 11114899
Q ss_pred EEEecCCCh--------------hhHHHHHHhcccCCcEEEEec
Q 021550 184 SIFLDLPQP--------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 184 ~V~~d~~~~--------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+||+|+|.. ...+..+.++|+|||.+++.+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999999932 356788999999999999754
No 163
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.06 E-value=3e-09 Score=87.62 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC-CCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF-SGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~-~~~~D~V 185 (311)
-.|.++||+.+|||.+++..+.+ ++.+++.+|.+...+...++|++..+......+...|+.. .++... .+.||+|
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~-~L~~~~~~~~FDlV 118 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR-ALKQLGTREPFDLV 118 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH-HHHhcCCCCcccEE
Confidence 57899999999999999999988 5789999999999999999999999977779999999873 222111 1349999
Q ss_pred EecCCChhhHH------HH--HHhcccCCcEEEEe
Q 021550 186 FLDLPQPWLAI------PS--AKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~~~l------~~--~~~~LkpgG~lv~~ 212 (311)
|+|+|-.+..+ .. -..+|+|+|.+++-
T Consensus 119 flDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 119 FLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 99999665443 22 24669999999863
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.06 E-value=1.1e-09 Score=92.21 Aligned_cols=100 Identities=24% Similarity=0.422 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|..|+|+.||-|.+++.+|+. +....|+++|++|..++.+++|++.+++.+.+.+.++|+... .+. ..+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~-~~~---~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF-LPE---GKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T---T-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh-cCc---cccCEE
Confidence 678999999999999999999985 346889999999999999999999999999899999999752 233 789999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEE
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv 210 (311)
+++.| ....+|..+...+++||.+.
T Consensus 174 im~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99988 44579999999999999875
No 165
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.4e-09 Score=100.36 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=104.2
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
+....++++++..++++|||+-||.|.+++.+|+. ..+|+++|+++++++.|++|++.+++.| +++..+|+.+...
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~ 355 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhh
Confidence 33445778888889999999999999999999976 5899999999999999999999999998 9999999875211
Q ss_pred CCcCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-c--CceeeEEEeeceeeEE
Q 021550 175 PDEFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-N--FTDIRTFEILLRTYEI 245 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~--f~~~~~~e~~~r~~~v 245 (311)
.......+|.|++|+|-. ..+++.+. .++|..++++.+-. ..+.+-...|.. + ...+..++.+....|+
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVSCNP-~TlaRDl~~L~~~gy~i~~v~~~DmFP~T~Hv 430 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVSCNP-ATLARDLAILASTGYEIERVQPFDMFPHTHHV 430 (432)
T ss_pred hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEeCCH-HHHHHHHHHHHhCCeEEEEEEEeccCCCcccc
Confidence 110114789999999832 34444444 46676666654433 445555555555 4 4555666655554443
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=1.8e-09 Score=90.62 Aligned_cols=103 Identities=13% Similarity=0.086 Sum_probs=78.3
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~D~ 184 (311)
..+.+|||++||+|.+++.++.+ +..+|+++|.++.+++.+++|++.++..++++++.+|+... .+.. ....+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dv 124 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNV 124 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceE
Confidence 36789999999999999999988 35689999999999999999999998876689999999531 1111 0024899
Q ss_pred EEecCCChhh----HHHHH--HhcccCCcEEEEe
Q 021550 185 IFLDLPQPWL----AIPSA--KKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~~~~~----~l~~~--~~~LkpgG~lv~~ 212 (311)
|++|+|-... .+..+ ..+|+++|.+++-
T Consensus 125 v~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 125 IYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9999985432 33333 2367888888753
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.04 E-value=1.5e-09 Score=97.16 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=76.6
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
+..+..++..+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+...+++++.+|+....
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 445556888889999999999999999999999987 46899999999999999999887764455999999997533
Q ss_pred CCCcCCCCccEEEecCCCh
Q 021550 174 FPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~ 192 (311)
+ ..+|.|+.|+|-.
T Consensus 99 ~-----~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 F-----PYFDVCVANVPYQ 112 (294)
T ss_pred c-----cccCEEEecCCcc
Confidence 3 4589999998854
No 168
>PHA03411 putative methyltransferase; Provisional
Probab=99.03 E-value=2.8e-09 Score=93.13 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=81.8
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
...++.+|||+|||+|.++..++.+. +..+|+++|+++.+++.+++++ . .+.++.+|+... ... ..||+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~-~~~---~kFDl 129 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEF-ESN---EKFDV 129 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhh-ccc---CCCcE
Confidence 34456799999999999999888874 3479999999999999998863 2 378899999743 223 67999
Q ss_pred EEecCCCh-------------------------hhHHHHHHhcccCCcEEEE-ecCCH-----HHHHHHHHHHhh-cC
Q 021550 185 IFLDLPQP-------------------------WLAIPSAKKMLKQDGILCS-FSPCI-----EQVQRSCESLRL-NF 230 (311)
Q Consensus 185 V~~d~~~~-------------------------~~~l~~~~~~LkpgG~lv~-~~~~~-----~~~~~~~~~l~~-~f 230 (311)
|++|+|-. ..++.....+|+|+|.+.+ |+... -...+....|++ +|
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 99987711 1345666789999997654 22211 123455566666 44
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-09 Score=96.52 Aligned_cols=105 Identities=24% Similarity=0.310 Sum_probs=85.3
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+++.-.+-.++.|||+|||+|.+++..|++ ++.+|+++|.+.-+ +.|++.+..+++.+.++++++.+.+..+|.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--- 125 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPV--- 125 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCc---
Confidence 444444678899999999999999999988 58999999997655 999999999999999999999998766674
Q ss_pred CCccEEEecCCChhhHHHHH--------HhcccCCcEEE
Q 021550 180 GLADSIFLDLPQPWLAIPSA--------KKMLKQDGILC 210 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~--------~~~LkpgG~lv 210 (311)
+++|+|++.+-..+.+.+.+ -+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 78999998766555444333 35899999875
No 170
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=4.7e-09 Score=92.38 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=113.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCC-----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHR----- 88 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~----- 88 (311)
.+|+||||.+... +.|+.|..|+.|..+.+.-++-.--. ...|... |+..|. ++-..+|..
T Consensus 82 ~LkVGDrVaiEpg--------~~c~~cd~CK~GrYNlCp~m~f~atp---p~~G~la~y~~~~~--dfc~KLPd~vs~ee 148 (354)
T KOG0024|consen 82 HLKVGDRVAIEPG--------LPCRDCDFCKEGRYNLCPHMVFCATP---PVDGTLAEYYVHPA--DFCYKLPDNVSFEE 148 (354)
T ss_pred ccccCCeEEecCC--------CccccchhhhCcccccCCccccccCC---CcCCceEEEEEech--HheeeCCCCCchhh
Confidence 3799999999984 45777888988887776533311000 1112221 333332 222333332
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
...+.|-..+ +...+.++++|.+||.+|+|+ |.++...|+.++ ..+|+.+|+++.+++.|++ .|.+.......
T Consensus 149 GAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 149 GALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATVTDPSSH 223 (354)
T ss_pred cccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeEEeeccc
Confidence 2455665544 366788999999999999999 889999999984 7999999999999999997 45543122222
Q ss_pred ec-CC---C---CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 167 RD-IQ---G---QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 167 ~D-~~---~---~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+ .. + ..+.. ..+|+.| +.......++.+...+++||.+++.
T Consensus 224 ~~~~~~~~~~v~~~~g~---~~~d~~~-dCsG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 224 KSSPQELAELVEKALGK---KQPDVTF-DCSGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred cccHHHHHHHHHhhccc---cCCCeEE-EccCchHHHHHHHHHhccCCEEEEe
Confidence 11 00 0 11111 3488866 3344445788899999999997764
No 171
>PRK06202 hypothetical protein; Provisional
Probab=98.99 E-value=6.3e-09 Score=90.33 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=70.8
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
+...++.+|||+|||+|.++..+++.. ++..+|+++|+++++++.|+++....+ +.+...+......++ +
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~---~ 128 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG---E 128 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC---C
Confidence 344567899999999999998888653 345699999999999999988754332 555555554333333 6
Q ss_pred CccEEEec-----CCCh--hhHHHHHHhcccCCcEEEE
Q 021550 181 LADSIFLD-----LPQP--WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 181 ~~D~V~~d-----~~~~--~~~l~~~~~~LkpgG~lv~ 211 (311)
+||+|+++ .+++ ..++.++.++++ |.+++
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEE
Confidence 89999863 3443 358899999887 44443
No 172
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.98 E-value=6.3e-09 Score=77.09 Aligned_cols=96 Identities=27% Similarity=0.261 Sum_probs=74.4
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCCCCccEEEecC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFSGLADSIFLDL 189 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~~~~D~V~~d~ 189 (311)
+++|+|||.|.++..++.. +..+++++|+++..++.+++....... ..+.+...|+.+... .. +++|+|+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEAD---ESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccC---CceEEEEEcc
Confidence 4899999999999888872 578999999999999988864433333 348889998875332 22 6799999766
Q ss_pred CC------hhhHHHHHHhcccCCcEEEEe
Q 021550 190 PQ------PWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 190 ~~------~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. ...++..+.+.|+|||.+++.
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 356788999999999999853
No 173
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.97 E-value=3.4e-09 Score=93.87 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=77.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCCCC-cCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS-SFVTVGVRDIQGQGFPD-EFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~D~~~~~~~~-~~~~~~D~ 184 (311)
..|.+||++.|=+|+++++++.. ++.+|+.+|.|..+++.|++|+..++++ ..++++..|+.+ .+.. ...+.||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~-~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK-FLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH-HHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH-HHHHHhcCCCCCE
Confidence 45899999999999999987654 5678999999999999999999999975 568999999864 1111 01268999
Q ss_pred EEecCCCh-----------hhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDLPQP-----------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~~~-----------~~~l~~~~~~LkpgG~lv~~ 212 (311)
||+|+|.. ..++..+.++|+|||.+++.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999943 35788899999999998754
No 174
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.96 E-value=4.1e-09 Score=97.61 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=83.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ +.+...|+.. .+.. ...||+|++
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~-~l~~--~~~fD~V~l 131 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANA-LLHE--ERKFDVVDI 131 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHH-HHhh--cCCCCEEEE
Confidence 357999999999999999988753 4689999999999999999999999876 7789999863 2221 157999999
Q ss_pred cCCCh-hhHHHHHHhcccCCcEEEEe
Q 021550 188 DLPQP-WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 188 d~~~~-~~~l~~~~~~LkpgG~lv~~ 212 (311)
|++.. ..++..+...+++||.+++.
T Consensus 132 DP~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 98643 56788888899999999985
No 175
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=91.87 Aligned_cols=107 Identities=24% Similarity=0.339 Sum_probs=91.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..+|.+|||+-+|-|.+++.+|.. +..+|+++|++|.+++.+++|+..+++.+.+..+++|+....... +.+|.|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---~~aDrI 260 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---GVADRI 260 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---ccCCEE
Confidence 346999999999999999999988 345599999999999999999999999988999999998533332 679999
Q ss_pred EecCCC-hhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 186 FLDLPQ-PWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 186 ~~d~~~-~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+++.|. ...++..+.+.+++||.+..|....+
T Consensus 261 im~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 261 IMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 998874 47799999999999999988755443
No 176
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.96 E-value=6.9e-09 Score=82.77 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=92.9
Q ss_pred cCCceeeeccc---HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 86 SHRTQILYIAD---ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 86 ~~~~~~~~~~~---~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
++....+.|.. +..|+...+...|.-|||+|.|+|.+|.+++++.-+...++++|.++++.....+... . +
T Consensus 23 PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~-~ 96 (194)
T COG3963 23 PRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----G-V 96 (194)
T ss_pred CceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----C-c
Confidence 44444455544 2346677788889999999999999999999887677899999999999988876532 2 6
Q ss_pred EEEEecCCCCC--CCCcCCCCccEEEecCC-------ChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQG--FPDEFSGLADSIFLDLP-------QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~--~~~~~~~~~D~V~~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+++.+|+.+.. +.+.....||.||+..| ...++|+.+...|.+||.++.+.-
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 68888887522 33323367999998665 234789999999999999987543
No 177
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.95 E-value=8.2e-09 Score=89.28 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..++.+|||+|||+|.++..+++. ...|+++|+++.+++.|++++...+..+++.+..+|+.. .. +.||+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~---~~fD~v 131 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL---GRFDTV 131 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc---CCcCEE
Confidence 467789999999999999999876 357999999999999999998887775568999988532 23 679999
Q ss_pred Eec-----CCCh--hhHHHHHHhcccCCcEEEEecCC
Q 021550 186 FLD-----LPQP--WLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d-----~~~~--~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
++. .+.+ ..++..+.+.++ +|.++.+.+.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~ 167 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPY 167 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCc
Confidence 752 2322 245666666554 4445555543
No 178
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.95 E-value=4e-08 Score=88.71 Aligned_cols=98 Identities=23% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV----SSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
++.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....+. ...+.+...|+.. + . +.||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~--l-~---~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES--L-S---GKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh--c-C---CCcC
Confidence 5789999999999999999976 47999999999999999999876421 1237788888753 2 2 6799
Q ss_pred EEEe-----cCCChh--hHHHHHHhcccCCcEEEEecCC
Q 021550 184 SIFL-----DLPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 184 ~V~~-----d~~~~~--~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+|++ +.++.. ..+..+. .+.+||.++.+.|.
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~ 252 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPK 252 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCc
Confidence 9874 344322 2445554 45677777766554
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.94 E-value=6.3e-09 Score=91.76 Aligned_cols=90 Identities=24% Similarity=0.267 Sum_probs=73.8
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. . .+++++.+|+...
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~~ 87 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALKV 87 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEeccccC
Confidence 3445556888889999999999999999999999988 36899999999999999988754 2 3499999999754
Q ss_pred CCCCcCCCCccEEEecCCChh
Q 021550 173 GFPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~ 193 (311)
.+ ..+|.|+.++|-..
T Consensus 88 ~~-----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 88 DL-----PEFNKVVSNLPYQI 103 (258)
T ss_pred Cc-----hhceEEEEcCCccc
Confidence 43 34799999988543
No 180
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.94 E-value=6.4e-09 Score=89.26 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=77.5
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
|..+..|+..++++|++.|||+|.|+|.+|..+++. +.+|+++|+++.|+...++++......+..+++++|+.+..
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 555667999999999999999999999999999998 68999999999999999998876555577999999998755
Q ss_pred CCCcCCCCccEEEecCC
Q 021550 174 FPDEFSGLADSIFLDLP 190 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~ 190 (311)
++ .||.+|.+.|
T Consensus 121 ~P-----~fd~cVsNlP 132 (315)
T KOG0820|consen 121 LP-----RFDGCVSNLP 132 (315)
T ss_pred Cc-----ccceeeccCC
Confidence 54 4899998766
No 181
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.6e-08 Score=79.64 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=107.2
Q ss_pred CCCceEEccCCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHH---hcCCCCCCEEEEEcccccHHHHHHHHHhCCCc
Q 021550 58 PFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIM---YLELVPGCLVLESGTGSGSLTTSLARAVAPTG 134 (311)
Q Consensus 58 ~~G~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~ 134 (311)
-||+.+..-.+..++.+.|.-. +.++.++. .+.+.+|++||-+|+.+|....+++..++ .+
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RS---------------KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G 101 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRS---------------KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EG 101 (231)
T ss_pred ccCceeEEecCcceeeeCcchh---------------HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CC
Confidence 4777766555665665555432 33333443 45589999999999999999999999985 89
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEE
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~ 211 (311)
.++++|+++......-..+.+ .+++-.+.+|+....-....-+.+|+|+.|...|.+ +..++..+|++||.+++
T Consensus 102 ~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 102 RIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred cEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 999999999876655544433 234888899998511111122579999999877654 56888999999997665
Q ss_pred e---------cCCHHHHHHHHHHHhh-cCceee
Q 021550 212 F---------SPCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 212 ~---------~~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
. .+..+-+.+....|++ +|.-.+
T Consensus 179 ~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 179 AIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred EEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 3 1122445556666766 454443
No 182
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.93 E-value=5e-08 Score=82.27 Aligned_cols=142 Identities=23% Similarity=0.312 Sum_probs=103.5
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~----~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
++.+.++||.+||-+|+++|....++...++|.+.||++|+++.. +..|++ ..| |-.+..|+....-..
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtN-iiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTN-IIPIIEDARHPAKYR 221 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCC-ceeeeccCCCchhee
Confidence 356678999999999999999999999999999999999998753 344433 234 777888988532222
Q ss_pred cCCCCccEEEecCCChhh---HHHHHHhcccCCcEEEEe--cCCH-------HHHHHHHHHHhh-c--CceeeEEEeece
Q 021550 177 EFSGLADSIFLDLPQPWL---AIPSAKKMLKQDGILCSF--SPCI-------EQVQRSCESLRL-N--FTDIRTFEILLR 241 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~---~l~~~~~~LkpgG~lv~~--~~~~-------~~~~~~~~~l~~-~--f~~~~~~e~~~r 241 (311)
.+-+.+|+||.|.+.|.+ +..++..+|++||.++++ .+|. ..++.-.+.|++ . -.++-++|...|
T Consensus 222 mlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTLEPFER 301 (317)
T ss_pred eeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheeccccccC
Confidence 233679999999887754 346788899999999986 2333 334555566665 3 355567788888
Q ss_pred eeEEeeee
Q 021550 242 TYEIRQWR 249 (311)
Q Consensus 242 ~~~v~~~~ 249 (311)
.+-+....
T Consensus 302 dha~VvG~ 309 (317)
T KOG1596|consen 302 DHACVVGV 309 (317)
T ss_pred CceEEEEE
Confidence 88777654
No 183
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.93 E-value=4.1e-09 Score=85.39 Aligned_cols=113 Identities=23% Similarity=0.218 Sum_probs=70.1
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEec
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~d 188 (311)
..|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.|+...|+.++++++++|+.+ .+....... +|+||++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~-~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE-LLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH-HGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH-HHhhccccccccEEEEC
Confidence 36999999999999999998 478999999999999999999999998889999999975 221110022 8999998
Q ss_pred CC------------------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 189 LP------------------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 189 ~~------------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+| .|...-+-+....+-...+++|.|-...+.++.+..
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB-HHHHHHT-
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHh
Confidence 86 111111111222223346778888666666665554
No 184
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.92 E-value=1.5e-08 Score=89.61 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=88.2
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~~~~~~~~ 176 (311)
+-..++..| .+||.+|.|.|..+..++++. +-.+++.+|+++..++.+++.+.... . +.+++++..|..+ -+.+
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~-~v~~ 145 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE-FLRD 145 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH-HHHh
Confidence 334445555 699999999999999999984 46899999999999999999886543 2 3679999999874 2222
Q ss_pred cCCCCccEEEecCCCh---------hhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQP---------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+||+|++|..++ +++++.+.+.|+++|.+++.
T Consensus 146 -~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 146 -CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred -CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 114799999988766 78999999999999999986
No 185
>PRK00536 speE spermidine synthase; Provisional
Probab=98.91 E-value=3.9e-08 Score=86.09 Aligned_cols=137 Identities=18% Similarity=0.016 Sum_probs=96.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCcEEEEEecC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--V-SSFVTVGVRDI 169 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~-~~~v~~~~~D~ 169 (311)
|-+.+......++.. .++||.+|.|-|+.+..++++ + .+|+.+|++++.++.+++.+.... . +.+++++.. +
T Consensus 58 YHEmLvHppl~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~ 132 (262)
T PRK00536 58 ESELLAHMGGCTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L 132 (262)
T ss_pred HHHHHHHHHHhhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h
Confidence 334444444444444 489999999999999999998 3 499999999999999999654421 2 345666641 2
Q ss_pred CCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec--CC--HHHHHHHHHHHhhcCceeeEEEee
Q 021550 170 QGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS--PC--IEQVQRSCESLRLNFTDIRTFEIL 239 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~--~~--~~~~~~~~~~l~~~f~~~~~~e~~ 239 (311)
. +...+.||+||+|...+..+.+.+.+.|+|||.++.-+ |. .+....+...+++.|.....+-..
T Consensus 133 ~-----~~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~ 201 (262)
T PRK00536 133 L-----DLDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAP 201 (262)
T ss_pred h-----hccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEec
Confidence 1 11116799999997777789999999999999999843 32 345566666776667655555443
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=6.9e-09 Score=92.21 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=74.0
Q ss_pred ccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 95 ADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 95 ~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+..+++.+++.++++|||+|||+|.++..+++.. .+|+++|+++++++.+++++.. .+++++++|+....+
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCH
Confidence 334568888899999999999999999999999983 4999999999999999987642 349999999986444
Q ss_pred CCcCCCCccEEEecCCChh--hHHHHHH
Q 021550 175 PDEFSGLADSIFLDLPQPW--LAIPSAK 200 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~--~~l~~~~ 200 (311)
++ -..|.|+.|+|-.. .++..+.
T Consensus 102 ~~---~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 102 SE---LQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred HH---cCcceEEEeCCccchHHHHHHHH
Confidence 32 11588999988432 3444444
No 187
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.90 E-value=9.6e-09 Score=94.48 Aligned_cols=141 Identities=21% Similarity=0.308 Sum_probs=87.9
Q ss_pred HHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC---
Q 021550 97 ISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG--- 173 (311)
Q Consensus 97 ~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~--- 173 (311)
+..++++++..++ .|||+-||.|.+++.+|.. ..+|+|+|+++++++.|++|+..+++.| +++..+++.+..
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHH
Confidence 3456778887766 8999999999999999987 4799999999999999999999999987 999987764310
Q ss_pred -----CCC-----cCCCCccEEEecCCCh---hhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhhc--CceeeEEE
Q 021550 174 -----FPD-----EFSGLADSIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRLN--FTDIRTFE 237 (311)
Q Consensus 174 -----~~~-----~~~~~~D~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~~--f~~~~~~e 237 (311)
+.. .....+|+|++|+|-. ..+++.+.+ +. .++ |..|. ..+.+=...|.++ ...+..++
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~---~~-~iv-YvSCnP~tlaRDl~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKK---LK-RIV-YVSCNPATLARDLKILKEGYKLEKVQPVD 335 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHH---SS-EEE-EEES-HHHHHHHHHHHHCCEEEEEEEEE-
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhc---CC-eEE-EEECCHHHHHHHHHHHhhcCEEEEEEEee
Confidence 100 0013689999999833 334554433 33 333 44443 4455555566664 56677777
Q ss_pred eeceeeEEee
Q 021550 238 ILLRTYEIRQ 247 (311)
Q Consensus 238 ~~~r~~~v~~ 247 (311)
.+.+.+|++.
T Consensus 336 mFP~T~HvE~ 345 (352)
T PF05958_consen 336 MFPQTHHVET 345 (352)
T ss_dssp SSTTSS--EE
T ss_pred cCCCCCcEEE
Confidence 7777777764
No 188
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=87.19 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=76.7
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------------hcCCCCcEEEEEecCCC
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE------------RTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~------------~~g~~~~v~~~~~D~~~ 171 (311)
+...++.+||+.|||.|.-+.+|+.+ +..|+++|+|+..++.+.+... ... ...+++.++|+.+
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~ 114 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFN 114 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcC
Confidence 34556789999999999999999987 5789999999999998765210 011 1248999999986
Q ss_pred CCCCCcCCCCccEEE-----ecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDEFSGLADSIF-----LDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~-----~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
........+.||+|+ +.+| ....+++.+.++|+|||.+++.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 432111125799975 2233 3346899999999999998764
No 189
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.89 E-value=4.8e-08 Score=88.05 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEe-cCCC--CCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVR-DIQG--QGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~-D~~~--~~~~~~~~~~~D 183 (311)
++.++||||||+|.+...++.+. +..+++++|+++.+++.|++|+..+ ++.+++++... |... ..+.. ..+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~-~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH-KNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc-cCCceE
Confidence 45799999999998888887765 4689999999999999999999998 78877888643 3321 11110 116899
Q ss_pred EEEecCC
Q 021550 184 SIFLDLP 190 (311)
Q Consensus 184 ~V~~d~~ 190 (311)
+|++|+|
T Consensus 192 livcNPP 198 (321)
T PRK11727 192 ATLCNPP 198 (321)
T ss_pred EEEeCCC
Confidence 9999988
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=3.4e-08 Score=86.86 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=76.9
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.++++|||+|||+|.++..+++.. ..|+++|+++.+++.+++++.. ..+++++.+|+...
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 34455568888888999999999999999999999884 4699999999999999987643 23489999999764
Q ss_pred CCCCcCCCCcc---EEEecCCChh--hHHHHHHhcccCCcE
Q 021550 173 GFPDEFSGLAD---SIFLDLPQPW--LAIPSAKKMLKQDGI 208 (311)
Q Consensus 173 ~~~~~~~~~~D---~V~~d~~~~~--~~l~~~~~~LkpgG~ 208 (311)
.++ .+| .|+.++|-.. ..+.++.. .++..
T Consensus 88 ~~~-----~~d~~~~vvsNlPy~i~~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 88 DLP-----DFPKQLKVVSNLPYNISSPLIFKLLE--KPKFR 121 (253)
T ss_pred Chh-----HcCCcceEEEcCChhhHHHHHHHHhc--cCCCc
Confidence 433 355 8888988543 23444443 44443
No 191
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.86 E-value=1.5e-08 Score=88.58 Aligned_cols=130 Identities=21% Similarity=0.246 Sum_probs=94.2
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCCCCcCCC-Ccc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV---SSFVTVGVRDIQGQGFPDEFSG-LAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---~~~v~~~~~D~~~~~~~~~~~~-~~D 183 (311)
...+||.+|.|.|..+..+++.- +..+|+.+|+++..++.|++.+..... +++++++.+|... -+.. ..+ .||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~-~l~~-~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK-FLKE-TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH-HHHT-SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH-HHHh-ccCCccc
Confidence 56899999999999999988762 357999999999999999998765322 3579999999864 1111 114 899
Q ss_pred EEEecCCCh---------hhHHHHHHhcccCCcEEEEecC----CHHHHHHHHHHHhhcCceeeEEEeec
Q 021550 184 SIFLDLPQP---------WLAIPSAKKMLKQDGILCSFSP----CIEQVQRSCESLRLNFTDIRTFEILL 240 (311)
Q Consensus 184 ~V~~d~~~~---------~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~f~~~~~~e~~~ 240 (311)
+|++|..+| .++++.+.+.|+|+|.+++... ....+..+.+.++..|..........
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 999988764 3789999999999999998642 23445566666666677665555443
No 192
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=1.2e-07 Score=80.02 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=73.8
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-C-C
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-Q-G 173 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~-~ 173 (311)
++..+...+ .++++|||+|||+|.++..+++.. ...++++|+++++++.++++ + +++..+|+.. . .
T Consensus 3 ~~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~ 70 (194)
T TIGR02081 3 DLESILNLI--PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEA 70 (194)
T ss_pred hHHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccc
Confidence 344455554 477899999999999998887763 46789999999999888642 2 6777888764 1 2
Q ss_pred CCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecCCHH
Q 021550 174 FPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 174 ~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+++ ++||+|++ +.+++..+++++.+.++ .+++..|...
T Consensus 71 ~~~---~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~ 113 (194)
T TIGR02081 71 FPD---KSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFG 113 (194)
T ss_pred cCC---CCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChh
Confidence 344 68999986 35677778888776654 4444445443
No 193
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.3e-08 Score=81.43 Aligned_cols=119 Identities=20% Similarity=0.309 Sum_probs=89.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC----CcC-CC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP----DEF-SG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~~~-~~ 180 (311)
+.++..|+|+|+.+|+++..+++.+++.++|+++|+.|-- ...+ +.++++|+...... +.. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 5788999999999999999999999888889999997632 2334 89999999863211 111 14
Q ss_pred CccEEEecCCCh----------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 181 LADSIFLDLPQP----------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 181 ~~D~V~~d~~~~----------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
.+|+|++|+... ..++.-+...|+|||.+++-....+....+...++..|..++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe
Confidence 579999886521 14567788899999999986666666777888888777766544
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.81 E-value=1.6e-08 Score=91.74 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=87.5
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAV------APTGHVYTFDFHEQRAASAREDFERTGVSSF 161 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~ 161 (311)
.+.+.|..+. +++.++...++.+|+|.+||+|.+...+.+.+ .....++|+|+++.++..|+.++..++....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 3566677766 47788888899999999999999998888754 2468999999999999999998877665432
Q ss_pred -EEEEEecCCCCCCCCcCCCCccEEEecCCC--------------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 162 -VTVGVRDIQGQGFPDEFSGLADSIFLDLPQ--------------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 -v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~--------------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+..+|........ ....||+|+.++|- .+.++..+.+.|++||+++++.|
T Consensus 106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccc-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 457788876422211 11689999988771 02478999999999999988777
Q ss_pred C
Q 021550 215 C 215 (311)
Q Consensus 215 ~ 215 (311)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 4
No 195
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7.5e-09 Score=80.57 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=88.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
-.|..++|+|||.|.+..+.+.. ....|+|+|+++++++.+..|+....+. ++++++|+.+..+.. +.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~---g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG---GIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC---CeEeeEE
Confidence 46889999999999999554433 4688999999999999999999887764 789999998655544 7899999
Q ss_pred ecCC-------ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh--cCceeeEEEeeceeeEE
Q 021550 187 LDLP-------QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL--NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 187 ~d~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~--~f~~~~~~e~~~r~~~v 245 (311)
+|+| ..-++++.++++.+ ++|+-......+..-.|-. .|...+..+....-|+.
T Consensus 120 iNppFGTk~~~aDm~fv~~al~~~~-----~VySLHKtSTRey~~kLP~~ykFHK~k~vdiaVDlirf 182 (185)
T KOG3420|consen 120 INPPFGTKKKGADMEFVSAALKVAS-----AVYSLHKTSTREYRYKLPKLYKFHKRKEVDIAVDLIRF 182 (185)
T ss_pred ecCCCCcccccccHHHHHHHHHHHH-----HHHHHhcccHHHHHHhcchhhhhhhccccceeeeEEEe
Confidence 9987 22356666666655 4455444444444444443 35444444444444443
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.78 E-value=2.1e-08 Score=89.29 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=73.9
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..+++.+.+.|+..+||++||.|+.+..+++.+++.++|+++|.++++++.|++++.. .+++.++++|+.+.
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK 81 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH
Confidence 34445578888899999999999999999999999986679999999999999999988755 34599999998751
Q ss_pred -CCCCcCCCCccEEEecCC
Q 021550 173 -GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~ 190 (311)
.++. ...++|.|++|+.
T Consensus 82 ~~l~~-~~~~vDgIl~DLG 99 (296)
T PRK00050 82 EVLAE-GLGKVDGILLDLG 99 (296)
T ss_pred HHHHc-CCCccCEEEECCC
Confidence 1221 0127999987653
No 197
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.77 E-value=4.6e-08 Score=92.29 Aligned_cols=98 Identities=24% Similarity=0.329 Sum_probs=74.2
Q ss_pred CCEEEEEcccccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 109 GCLVLESGTGSGSLTTSLARA---VAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+..|+|+|||+|.++...+++ .+...+|+++|.++.+....++.+..++..++|+++++|+++...+ .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp----ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP----EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS----S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC----CceeEE
Confidence 568999999999998766554 2345799999999999888888777888888899999999875555 589999
Q ss_pred EecCC-------ChhhHHHHHHhcccCCcEEE
Q 021550 186 FLDLP-------QPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~-------~~~~~l~~~~~~LkpgG~lv 210 (311)
|+.+- -..+.|..+.+.|||+|.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 96431 22357888899999999864
No 198
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.76 E-value=5.7e-08 Score=83.24 Aligned_cols=104 Identities=26% Similarity=0.219 Sum_probs=74.2
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-c-----C-----CCCcEEEEEecC
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-T-----G-----VSSFVTVGVRDI 169 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~-----g-----~~~~v~~~~~D~ 169 (311)
+..+...++.+||+.|||.|.-...|+++ +..|+|+|+|+.+++.+.+.... . + ....|++.++|+
T Consensus 30 ~~~l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf 106 (218)
T PF05724_consen 30 LDSLALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF 106 (218)
T ss_dssp HHHHTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence 33456788889999999999999999987 57999999999999988432111 0 0 122478999999
Q ss_pred CCCCCCCcCCCCccEEE-------ecCCChhhHHHHHHhcccCCcEE
Q 021550 170 QGQGFPDEFSGLADSIF-------LDLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~-------~d~~~~~~~l~~~~~~LkpgG~l 209 (311)
.. +.....+.||+|+ +++.....+.+.+.++|+|||.+
T Consensus 107 F~--l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 107 FE--LPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp TT--GGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred cc--CChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 75 2221125799987 12234457899999999999993
No 199
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=98.76 E-value=7.9e-08 Score=88.30 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=105.8
Q ss_pred CCCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceE--EccCCcEE-EEecCCHHHHhhhhcCCc-
Q 021550 14 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV--FSNKGGFV-YLLAPTPELWTLVLSHRT- 89 (311)
Q Consensus 14 ~~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~--~~~~~~~~-~~~~p~~~~~~~~~~~~~- 89 (311)
..+++||+|++.. ...||.|..|+.|....+.-.. .+|... ....|.+. |+..|....+ .++...
T Consensus 77 ~~~~vGdrV~~~~--------~~~cg~c~~c~~g~~~~c~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~--~~P~~l~ 145 (343)
T PRK09880 77 SGLKEGQTVAINP--------SKPCGHCKYCLSHNENQCTTMR-FFGSAMYFPHVDGGFTRYKVVDTAQCI--PYPEKAD 145 (343)
T ss_pred ccCCCCCEEEECC--------CCCCcCChhhcCCChhhCCCcc-eeecccccCCCCCceeeeEEechHHeE--ECCCCCC
Confidence 3589999999875 3458888888877655544211 111100 00123332 4444432211 112111
Q ss_pred ----eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEE
Q 021550 90 ----QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVT 163 (311)
Q Consensus 90 ----~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~ 163 (311)
....|-..+ ..+......++++||..|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..+.
T Consensus 146 ~~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~ 220 (343)
T PRK09880 146 EKVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVN 220 (343)
T ss_pred HHHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEec
Confidence 112222222 234455667899999999987 888888998863 3579999999999888875 45433222
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....++.+ +... .+.+|+||-.... ...+..+.+.|++||.++.+..
T Consensus 221 ~~~~~~~~--~~~~-~g~~D~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 221 PQNDDLDH--YKAE-KGYFDVSFEVSGH-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCcccHHH--Hhcc-CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 22222211 1111 1458997754443 3478889999999999998764
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.76 E-value=2.8e-07 Score=76.71 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=86.8
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+++|+|+|.|..++.++-.. |+.+++.+|.+...+...+.-....++.| +++.+.++++ .... ..||+|++-.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~---~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR---ESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT---T-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC---CCccEEEeehh
Confidence 89999999999999998775 88999999999999999999999999987 9999999985 2222 78999998544
Q ss_pred -ChhhHHHHHHhcccCCcEEEEecCC--HHHHHHHHHHHhh
Q 021550 191 -QPWLAIPSAKKMLKQDGILCSFSPC--IEQVQRSCESLRL 228 (311)
Q Consensus 191 -~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~ 228 (311)
....++..+.+.|++||.++++-.. .+.+.+....+..
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~ 165 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKK 165 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHC
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHH
Confidence 4446788899999999999988532 3444444444444
No 201
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.76 E-value=8e-08 Score=88.64 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=84.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
-+|||+.||+|..++.++....+..+|+++|++++.++.+++|++.+++.+ +++.+.|+... +.. ....||+|++|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~-l~~-~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANV-LRY-RNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHH-HHH-hCCCCCEEEeCC
Confidence 589999999999999999885445799999999999999999999988775 88999998742 211 115699999998
Q ss_pred CCh-hhHHHHHHhcccCCcEEEEec
Q 021550 190 PQP-WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 190 ~~~-~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.. ..++..+.+.+++||.+++.+
T Consensus 123 fGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCcHHHHHHHHHhcccCCEEEEEe
Confidence 753 479999999999999999863
No 202
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.75 E-value=7.8e-08 Score=84.85 Aligned_cols=98 Identities=26% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
--.+..|||+|||+|.++...+.+ ++.+|+++|-| +|.+.|++.++.+.+.++|.++.+.+++..+| +++|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP----Ek~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP----EKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc----hhccEE
Confidence 346789999999999999988887 68999999985 78899999999998888999999998876666 689998
Q ss_pred EecCCCh-------hhHHHHHHhcccCCcEEE
Q 021550 186 FLDLPQP-------WLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 186 ~~d~~~~-------~~~l~~~~~~LkpgG~lv 210 (311)
|..+-.. .+..-.+.+.|+|.|.+.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 8764322 123345679999999864
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=6.5e-08 Score=84.07 Aligned_cols=89 Identities=26% Similarity=0.314 Sum_probs=74.6
Q ss_pred cHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 96 DISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 96 ~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
.+..|++.+++.+++.|||||+|.|.+|..|+++ ..+|+++|+++.+++..++.+. ...+++++++|+....++
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 3556899999999999999999999999999998 5789999999999999998765 223499999999876666
Q ss_pred CcCCCCccEEEecCCCh
Q 021550 176 DEFSGLADSIFLDLPQP 192 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~ 192 (311)
.. ..++.|+.|.|-.
T Consensus 92 ~l--~~~~~vVaNlPY~ 106 (259)
T COG0030 92 SL--AQPYKVVANLPYN 106 (259)
T ss_pred hh--cCCCEEEEcCCCc
Confidence 31 1679999998844
No 204
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.73 E-value=1.4e-07 Score=82.41 Aligned_cols=101 Identities=26% Similarity=0.306 Sum_probs=79.4
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.++...+..+..+|||+|+|+|.++..++++. |..+++.+|. |+.++.+++ .++++++.+|+. ..++
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P--- 157 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLP--- 157 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCS---
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhc---
Confidence 35566677788899999999999999999986 8899999999 888888877 456999999998 6666
Q ss_pred CCCccEEEe-----cCCCh--hhHHHHHHhcccCC--cEEEEecC
Q 021550 179 SGLADSIFL-----DLPQP--WLAIPSAKKMLKQD--GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~-----d~~~~--~~~l~~~~~~Lkpg--G~lv~~~~ 214 (311)
. +|++++ +.++. ..+|+++.+.|+|| |+|++..+
T Consensus 158 -~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 158 -V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred -c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 4 999985 33332 36899999999999 99998633
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.72 E-value=2.4e-07 Score=92.74 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=95.0
Q ss_pred eeeecccHHHHHHhcCC-CCCCEEEEEcccccHHHHHHHHHhC-------------------------------------
Q 021550 90 QILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTTSLARAVA------------------------------------- 131 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~------------------------------------- 131 (311)
..+.+..++.++.+.+. .++..++|.+||+|.+.+..+....
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 44667777778888887 6789999999999999988765311
Q ss_pred ----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh---------hhH---
Q 021550 132 ----PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP---------WLA--- 195 (311)
Q Consensus 132 ----~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~---------~~~--- 195 (311)
...+++++|+++.+++.|++|+..+|+.+.+++.++|+.+...+. ..+.+|+|+.|+|-- ..+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-PKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-ccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 123799999999999999999999999888999999997633221 114699999998821 112
Q ss_pred HHHHHhcccCCcEEEEecCCHH
Q 021550 196 IPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 196 l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
+...++...+|+.++++++..+
T Consensus 330 lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCHH
Confidence 2333444459999998888654
No 206
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.71 E-value=5.4e-09 Score=87.55 Aligned_cols=115 Identities=20% Similarity=0.103 Sum_probs=83.0
Q ss_pred eeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 90 QILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
..--|..++.++..++..+=.++||+|||||..+..+-.. ..++.++|+|+.|+++|.++ |+-+ ...+.|+
T Consensus 107 ~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea 177 (287)
T COG4976 107 GYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEA 177 (287)
T ss_pred cCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence 3345777777888888887889999999999999888777 47899999999999999864 3322 2233443
Q ss_pred CCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 170 QGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 170 ~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. -.+...++.||+|.. .+.....++.-+...|+|||.|.+.+-
T Consensus 178 ~~-Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 178 VL-FLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred HH-HhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEec
Confidence 31 122122378999863 234555688889999999999997543
No 207
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.6e-07 Score=76.29 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCC--------CCCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQG--------QGFPD 176 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~--------~~~~~ 176 (311)
++|+++|||+||.+|.++....++.+|.+.|.++|+-.- ..... +.++.+ |+.+ +.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999998431 11222 444554 6654 22343
Q ss_pred cCCCCccEEEecCCC---------hh-------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEE
Q 021550 177 EFSGLADSIFLDLPQ---------PW-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTF 236 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~---------~~-------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~ 236 (311)
..+|+|++|+.. .. .++.-+...++|+|.+++-....++...+...|...|.+++.+
T Consensus 135 ---r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 135 ---RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKV 207 (232)
T ss_pred ---CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEee
Confidence 689999988742 21 2455567788999999987777778888888888888877644
No 208
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.3e-07 Score=81.06 Aligned_cols=127 Identities=21% Similarity=0.256 Sum_probs=92.1
Q ss_pred CceeeecccHHHHH--HhcCCCCCCEEEEEcccccHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 88 RTQILYIADISFVI--MYLELVPGCLVLESGTGSGSLTTSLARAVAPT---GHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 88 ~~~~~~~~~~~~i~--~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
....++..++.-++ -.++++||++|||+++.+|.-++++++.+... +.|++-|.++.++......+......+ +
T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~ 211 (375)
T KOG2198|consen 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-L 211 (375)
T ss_pred ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-e
Confidence 44456666655444 67889999999999999999999999987532 589999999999988887775544333 5
Q ss_pred EEEEecCCCCC------CCCcCCCCccEEEecCCCh----------------------------hhHHHHHHhcccCCcE
Q 021550 163 TVGVRDIQGQG------FPDEFSGLADSIFLDLPQP----------------------------WLAIPSAKKMLKQDGI 208 (311)
Q Consensus 163 ~~~~~D~~~~~------~~~~~~~~~D~V~~d~~~~----------------------------~~~l~~~~~~LkpgG~ 208 (311)
.+...|+...+ ..+.....||-|++|.|+. +.+|.+.+++||+||.
T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred eeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 55555554311 1111124799999988733 2468889999999999
Q ss_pred EEEecCCH
Q 021550 209 LCSFSPCI 216 (311)
Q Consensus 209 lv~~~~~~ 216 (311)
+| |+.|.
T Consensus 292 lV-YSTCS 298 (375)
T KOG2198|consen 292 LV-YSTCS 298 (375)
T ss_pred EE-EeccC
Confidence 98 87765
No 209
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.63 E-value=2.2e-07 Score=76.87 Aligned_cols=121 Identities=24% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCC-cCCCC
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPD-EFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~-~~~~~ 181 (311)
...++.+|||+|||+|..++.++... +..+|+..|.++ .++.++.|++.++ ....+.+...|..+....+ .....
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 45678899999999999999888874 468999999998 9999999999876 4455777777654311000 01157
Q ss_pred ccEEEe-cC----CChhhHHHHHHhcccCCcEEEEecC-CHHHHHHHHHHHh
Q 021550 182 ADSIFL-DL----PQPWLAIPSAKKMLKQDGILCSFSP-CIEQVQRSCESLR 227 (311)
Q Consensus 182 ~D~V~~-d~----~~~~~~l~~~~~~LkpgG~lv~~~~-~~~~~~~~~~~l~ 227 (311)
||+|+. |. .....++..+.++|+++|.+++..+ -.....++.+.++
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~ 171 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLK 171 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH-
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhh
Confidence 999984 32 2334567788889999888554332 2233444555443
No 210
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.63 E-value=8.8e-08 Score=81.09 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=69.6
Q ss_pred hcCCCCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 103 YLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 103 ~~~~~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.+...++. .++|+|||+|..+..++.+. .+|+++|+++.|++.|++.....-..--......+. ..+.. ..++
T Consensus 27 ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~--v~L~g-~e~S 100 (261)
T KOG3010|consen 27 IASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM--VDLLG-GEES 100 (261)
T ss_pred HHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccc--ccccC-CCcc
Confidence 34445555 78999999997777788874 789999999999999886432211110011111111 12221 0278
Q ss_pred ccEEEe----cCCChhhHHHHHHhcccCCc-EEEEecCC
Q 021550 182 ADSIFL----DLPQPWLAIPSAKKMLKQDG-ILCSFSPC 215 (311)
Q Consensus 182 ~D~V~~----d~~~~~~~l~~~~~~LkpgG-~lv~~~~~ 215 (311)
+|+|++ +.-+...+.+.+.++||+.| .++++...
T Consensus 101 VDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 101 VDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999985 44566688999999999765 77765443
No 211
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=5.7e-07 Score=76.19 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=71.2
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---------------------------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS--------------------------- 159 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~--------------------------- 159 (311)
..+..+|||||-+|.+++++++.++ ...|.++||++..++.|+++++..--.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 4567899999999999999999985 578999999999999999987542100
Q ss_pred -------CcEEEEEecCC--CCCCCCcCCCCccEEEe---------cCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 160 -------SFVTVGVRDIQ--GQGFPDEFSGLADSIFL---------DLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 160 -------~~v~~~~~D~~--~~~~~~~~~~~~D~V~~---------d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+++.+...+.. ...+-......||+|++ |.. ..+.++.++.++|.|||+|++-
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00111111000 00010112257999863 222 3367999999999999999963
No 212
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.2e-07 Score=83.69 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
.+-+++++.++..+||+.||||.+++.+++. ..+|+++|++++.++.|++|+..+|+.| .+|+.+-+++ .++...
T Consensus 374 ~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~-~~~sl~ 448 (534)
T KOG2187|consen 374 TIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED-LFPSLL 448 (534)
T ss_pred HHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh-ccchhc
Confidence 4778899999999999999999999999987 4899999999999999999999999998 9999996653 333221
Q ss_pred C---CCcc-EEEecCCCh---hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 179 S---GLAD-SIFLDLPQP---WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 179 ~---~~~D-~V~~d~~~~---~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
. ++-+ ++++|+|.. ..++..+...-++--.+++.+-...+...+......
T Consensus 449 ~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~ 505 (534)
T KOG2187|consen 449 TPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSS 505 (534)
T ss_pred ccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcC
Confidence 1 2335 567888732 345555555444655555443333334444444433
No 213
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.60 E-value=2.9e-07 Score=82.17 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=101.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCccc---ccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDW---IGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ 90 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~---iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 90 (311)
.+++||+|.+.. .+.||.|..|+.|....+.- +|......-....|++. |+..|... +...+|....
T Consensus 25 ~~~~GdrV~~~~--------~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~v~~~~-~~~~lP~~~~ 95 (280)
T TIGR03366 25 PLRLGQRVVWSV--------TVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCHLPAGT-AIVPVPDDLP 95 (280)
T ss_pred CCCCCCEEEEcC--------CCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEEecCCC-cEEECCCCCC
Confidence 699999998865 34589999998887555532 22110000000122222 33334321 1111121110
Q ss_pred -----eee-c-ccHHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE
Q 021550 91 -----ILY-I-ADISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV 162 (311)
Q Consensus 91 -----~~~-~-~~~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v 162 (311)
.+. . ..+...+..+...++++||.+|+|+ |.++..+++..+ ..+|+++|.+++.++.+++ .|.+..+
T Consensus 96 ~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i 170 (280)
T TIGR03366 96 DAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALA 170 (280)
T ss_pred HHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEec
Confidence 010 0 0011234455667899999999987 888888888863 3458999999998887765 3543212
Q ss_pred EEEEecCCCCCCCCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 163 TVGVRDIQGQGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 163 ~~~~~D~~~~~~~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.. ..+... ....+|+||-.... ...++.+.+.|+++|.++++..
T Consensus 171 ~~~--~~~-~~~~~~~~~~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 171 EPE--VLA-ERQGGLQNGRGVDVALEFSGA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred Cch--hhH-HHHHHHhCCCCCCEEEECCCC-hHHHHHHHHHhcCCCEEEEecc
Confidence 111 110 000000 11468997754433 3478889999999999998763
No 214
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.8e-06 Score=78.74 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=92.2
Q ss_pred ceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhC---C----------------------------Cc---
Q 021550 89 TQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVA---P----------------------------TG--- 134 (311)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~---~----------------------------~~--- 134 (311)
...+....++.|+.+++..++..++|-=||+|.+.+..|.... | .+
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 3456666677799999999999999999999999998876631 1 11
Q ss_pred ----EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChh-------------hHHH
Q 021550 135 ----HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPW-------------LAIP 197 (311)
Q Consensus 135 ----~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~-------------~~l~ 197 (311)
.++++|+++.+++.|+.|+...|+.+.|+|.++|+.. +.+.. +.+|+||+|+|--. .+.+
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~--l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD--LKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh--CCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 3789999999999999999999999999999999975 33211 57999999998221 1233
Q ss_pred HHHhcccCCcEEEEecC
Q 021550 198 SAKKMLKQDGILCSFSP 214 (311)
Q Consensus 198 ~~~~~LkpgG~lv~~~~ 214 (311)
.+.+.++.-+..++.++
T Consensus 329 ~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 329 TLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHhcCCceEEEEcc
Confidence 44455555566665443
No 215
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=98.58 E-value=7.3e-07 Score=79.41 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=77.3
Q ss_pred HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~ 176 (311)
..+.-+++++|++|..+|||. |..+++-|... +..+++++|++++.++.|++ +|..+.++.... |+.+ .+.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~-~i~~ 249 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVE-AIVE 249 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHH-HHHH
Confidence 577888999999999999998 77777777765 57999999999999999985 465543433322 2321 1122
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+..|.+|-. ......++.++..+.++|..++.
T Consensus 250 ~T~gG~d~~~e~-~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 250 LTDGGADYAFEC-VGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred hcCCCCCEEEEc-cCCHHHHHHHHHHHhcCCeEEEE
Confidence 222578887644 44445899999999999998875
No 216
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.57 E-value=2.9e-07 Score=75.23 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=60.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCcCCCCccEEEe-----cCCChhhHHHHHHhcccCCcEE
Q 021550 137 YTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-----DLPQPWLAIPSAKKMLKQDGIL 209 (311)
Q Consensus 137 ~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-----d~~~~~~~l~~~~~~LkpgG~l 209 (311)
+|+|+|++|++.|+++..... ..++++++++|+.+.++++ ++||+|++ +.+++..+++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~---~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD---CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC---CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 479999999999987765322 2235999999998766665 78999975 4578889999999999999999
Q ss_pred EEecC
Q 021550 210 CSFSP 214 (311)
Q Consensus 210 v~~~~ 214 (311)
++...
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 87644
No 217
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=98.56 E-value=6.8e-07 Score=83.71 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=106.9
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccC-----CCCceEE-ccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGK-----PFGSMVF-SNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~-----~~G~~~~-~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|.+.. .+.||.|.+|+.|....|..... .+|.... ...|++. |+..|........++.
T Consensus 82 ~~~vGdrV~~~~--------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~ 153 (393)
T TIGR02819 82 FIKIGDIVSVPF--------NIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPD 153 (393)
T ss_pred cccCCCEEEEec--------ccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCC
Confidence 489999999876 45699999999998776653210 1111000 0123333 5555532111112222
Q ss_pred Cc----------eeeecccHH-HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 88 RT----------QILYIADIS-FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 88 ~~----------~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.. .+..+-..+ ..+....+.++++||..|+|+ |.++..+++..+ ...+++.|.+++.++.|++
T Consensus 154 ~~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~---- 228 (393)
T TIGR02819 154 RDQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS---- 228 (393)
T ss_pred cccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----
Confidence 11 111111111 134456788999999999987 888888888864 3456677888888888875
Q ss_pred cCCCCcEEEEE-ecCCCCCCCCc-CCCCccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCC
Q 021550 156 TGVSSFVTVGV-RDIQGQGFPDE-FSGLADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 156 ~g~~~~v~~~~-~D~~~~~~~~~-~~~~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.|.. .+.... .+.. ..+... ....+|++|-....+. ..++.+.+.+++||.++++...
T Consensus 229 ~Ga~-~v~~~~~~~~~-~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 229 FGCE-TVDLSKDATLP-EQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred cCCe-EEecCCcccHH-HHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3542 121111 1111 111110 1136899875444432 4799999999999999987653
No 218
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.56 E-value=1.2e-07 Score=78.94 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=76.3
Q ss_pred HHHhcC-CCC--CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC----
Q 021550 100 VIMYLE-LVP--GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ---- 172 (311)
Q Consensus 100 i~~~~~-~~~--g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~---- 172 (311)
+.+..+ +.+ +.+|||+||++|+++..++++.++.++|+++|+.+. ....+ +..+.+|+.+.
T Consensus 12 i~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 12 IDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIK 79 (181)
T ss_dssp HHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSH
T ss_pred HHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHH
Confidence 444455 444 489999999999999999998655799999999876 11122 55555555431
Q ss_pred CCCCc---CCCCccEEEecCC---------Chh-------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCcee
Q 021550 173 GFPDE---FSGLADSIFLDLP---------QPW-------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDI 233 (311)
Q Consensus 173 ~~~~~---~~~~~D~V~~d~~---------~~~-------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~ 233 (311)
.+... ..+.+|+|++|.. +.. ..+.-+...|+|||.+++-.-.......+...++..|..+
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v 159 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKV 159 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHE
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEE
Confidence 11111 1158999999872 111 3455667889999988764333322347777777777765
Q ss_pred e
Q 021550 234 R 234 (311)
Q Consensus 234 ~ 234 (311)
.
T Consensus 160 ~ 160 (181)
T PF01728_consen 160 K 160 (181)
T ss_dssp E
T ss_pred E
Confidence 4
No 219
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.56 E-value=4.1e-07 Score=82.66 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=72.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCcEEEEEecCCCC----CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT---------GVSSFVTVGVRDIQGQ----GF 174 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------g~~~~v~~~~~D~~~~----~~ 174 (311)
++.+|||+|||-|+-+.-.... .-..++++|++...++.|+++.... ...-...++.+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999988865555444 4589999999999999999988321 1112356777777642 22
Q ss_pred CCcCCCCccEEEecCC---------ChhhHHHHHHhcccCCcEEEEecCCHHHH
Q 021550 175 PDEFSGLADSIFLDLP---------QPWLAIPSAKKMLKQDGILCSFSPCIEQV 219 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~---------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 219 (311)
... ...||+|-+-.. ....+|.++...|+|||+++.-.|..+.+
T Consensus 140 ~~~-~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPR-SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SST-TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred ccc-CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 320 148999854221 12358999999999999999888876655
No 220
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=1.3e-07 Score=79.96 Aligned_cols=99 Identities=24% Similarity=0.277 Sum_probs=71.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPT--GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~~~~D~V~~ 187 (311)
+|||+|||.|.....+++.. ++ -+|+++|.++.+++..+++..... .++.....|+....+.. ...+++|.|.+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 89999999999998888764 45 789999999999999998754322 33555556665422111 11278998752
Q ss_pred ----c---CCChhhHHHHHHhcccCCcEEEEe
Q 021550 188 ----D---LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 188 ----d---~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
. +.....+++++.++|||||.+++-
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 2 222346899999999999999974
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.51 E-value=1.8e-07 Score=79.15 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=75.9
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-CCcEE
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-------RTGV-SSFVT 163 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~g~-~~~v~ 163 (311)
+.+..+..+++.+++.+++..+|+|||.|....+++... +..+.+|+|+.+...+.|+.... ..|. ...++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 445556678899999999999999999999998888765 45679999999998887775432 2333 23477
Q ss_pred EEEecCCCCCCCCcCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecCC
Q 021550 164 VGVRDIQGQGFPDEFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 164 ~~~~D~~~~~~~~~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
+..+|+.+..+....-...|+||++-- +....|...+..||+|.+++...+.
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred eeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 888888652221110134799998633 3345677778889999998865443
No 222
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=77.11 Aligned_cols=152 Identities=18% Similarity=0.254 Sum_probs=97.6
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC-------CCCcEEEEEecCCCCCCCCcC-CC
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG-------VSSFVTVGVRDIQGQGFPDEF-SG 180 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-------~~~~v~~~~~D~~~~~~~~~~-~~ 180 (311)
.-.+.|||||-|++...|+..+ |+.-++|+||.....+..++++...+ +.| +.+...++.. .++... .+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk-~lpn~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMK-FLPNFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchh-hccchhhhc
Confidence 3468999999999999999986 78999999999999999988887654 333 6666666653 222110 14
Q ss_pred CccEEEecCCChh-------------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEee
Q 021550 181 LADSIFLDLPQPW-------------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIRQ 247 (311)
Q Consensus 181 ~~D~V~~d~~~~~-------------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~~ 247 (311)
..+-.|+-.|+|. ..+.+..-+|+.||.++.... +.++..++...|...-.+|.+..++...
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD----v~elh~wm~~~~e~hplfe~lt~ee~~~- 212 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD----VKELHEWMVKHLEEHPLFERLTEEEEEN- 212 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee----HHHHHHHHHHHHHhCcHhhhcchhhhcC-
Confidence 4555566566552 467788889999999997555 4444444444444444344333322221
Q ss_pred eeccCCCCCCCCCCCccccccccccccCCCCCCCC
Q 021550 248 WRADCGQGTGGGSAGSIRHKRKQHLIEGSGEKENP 282 (311)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (311)
++++.-..+.+++|.++..+.
T Consensus 213 --------------d~~v~~~~~~teeg~kv~r~~ 233 (249)
T KOG3115|consen 213 --------------DPCVELLSNATEEGKKVARNG 233 (249)
T ss_pred --------------CcchhhhhhhhhhcccccccC
Confidence 334444555666776665544
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=2.4e-06 Score=72.40 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=86.5
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEe
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFL 187 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~ 187 (311)
+.+++|||+|.|..++.+|-. .|+.+|+.+|.....+...+......+++| ++++++.+++.. .+ .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~-~~---~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFG-QE---KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcc-cc---cccCcEEEe
Confidence 689999999999999998844 478889999999999999999888999987 999999987522 21 23 999987
Q ss_pred cCC-ChhhHHHHHHhcccCCcEEEEe--cCCHHHHHHHHHHHhh
Q 021550 188 DLP-QPWLAIPSAKKMLKQDGILCSF--SPCIEQVQRSCESLRL 228 (311)
Q Consensus 188 d~~-~~~~~l~~~~~~LkpgG~lv~~--~~~~~~~~~~~~~l~~ 228 (311)
-.- .....++-+..++++||.++++ ....++..+.......
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~ 185 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILP 185 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHh
Confidence 433 3344677889999999988654 2233445555555544
No 224
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=98.50 E-value=3.6e-07 Score=83.59 Aligned_cols=180 Identities=22% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCc----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRT---- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~---- 89 (311)
.+++||+|+... ...||.|.+|+.|....+.-....+|.. ..|.+. |+..|....+ .++...
T Consensus 75 ~~~~Gd~V~~~~--------~~~c~~c~~c~~g~~~~c~~~~~~~g~~---~~G~~ae~~~v~~~~~~--~~P~~~~~~~ 141 (339)
T cd08239 75 HFRVGDRVMVYH--------YVGCGACRNCRRGWMQLCTSKRAAYGWN---RDGGHAEYMLVPEKTLI--PLPDDLSFAD 141 (339)
T ss_pred cCCCCCEEEECC--------CCCCCCChhhhCcCcccCcCcccccccC---CCCcceeEEEechHHeE--ECCCCCCHHH
Confidence 478899998866 3458888888877755553211112211 112221 3333332211 111110
Q ss_pred --eeeeccc-HHHHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE
Q 021550 90 --QILYIAD-ISFVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 90 --~~~~~~~-~~~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
.+..+-. +-..+..+++.+|++||..|+|. |.++..+++..+ ..+|++++.+++..+.+++ .|.+..+...
T Consensus 142 aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~ 216 (339)
T cd08239 142 GALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALG-AEDVIGVDPSPERLELAKA----LGADFVINSG 216 (339)
T ss_pred hhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEcCC
Confidence 1111111 11244567788999999999887 778888888863 3349999999998887754 3543212221
Q ss_pred EecCCCCCCCCcC-CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 166 VRDIQGQGFPDEF-SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 166 ~~D~~~~~~~~~~-~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+ . ..+.+.. ...+|+||-... ....+..+.+.|+++|.++++...
T Consensus 217 ~~~-~-~~~~~~~~~~~~d~vid~~g-~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 217 QDD-V-QEIRELTSGAGADVAIECSG-NTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred cch-H-HHHHHHhCCCCCCEEEECCC-CHHHHHHHHHHhhcCCEEEEEcCC
Confidence 111 1 0011001 136999764443 344678888999999999987643
No 225
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=98.49 E-value=1.1e-06 Score=81.59 Aligned_cols=107 Identities=22% Similarity=0.214 Sum_probs=71.3
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....++++|++||..|+|. |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..+.....|..+ .+.....
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~-~i~~~~~ 257 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVE-QVRELTG 257 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHH-HHHHHhC
Confidence 3556788999999999987 788888888863 3479999999999888864 4543222221112111 1111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+||-.... ...+..+.+.|+++|.++.+..
T Consensus 258 ~g~d~vid~~G~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGS-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCC-hHHHHHHHHHHhcCCEEEEEcc
Confidence 468997744433 3478888999999999998754
No 226
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.47 E-value=3e-07 Score=74.85 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=77.0
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
+.+.|+|+|+|.++...+.. +.+|+++|.+|...+.|++|+...|..+ ++++.+|+.+-.| +..|+|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f-----e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF-----ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc-----cccceeHHHH
Confidence 79999999999999888877 5899999999999999999998778766 9999999986444 4579988654
Q ss_pred CC-------hhhHHHHHHhcccCCcEEE
Q 021550 190 PQ-------PWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 190 ~~-------~~~~l~~~~~~LkpgG~lv 210 (311)
-+ ....++.++..|+-.+.++
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 32 2347888899999999887
No 227
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.46 E-value=7.7e-07 Score=74.30 Aligned_cols=114 Identities=23% Similarity=0.270 Sum_probs=71.3
Q ss_pred HHHHHhcCCCC-CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLELVP-GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~~~~-g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++.++.-.| ...|.|+|||.+.++..+ ....+|+++|+-.. . -.+..+|+...++++
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~--------------n--~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP--------------N--PRVTACDIANVPLED 120 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------S--TTEEES-TTS-S--T
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC--------------C--CCEEEecCccCcCCC
Confidence 34677776555 469999999999887443 23357999998532 1 236678998888887
Q ss_pred cCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecC--CHHHHHHHHHHHhh-cCceee
Q 021550 177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSP--CIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~-~f~~~~ 234 (311)
+++|++|+.+. +-..++.++.++|||||.+.+... -.+....+.+.+.. ||....
T Consensus 121 ---~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 121 ---ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp ---T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred ---CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 89999987543 455799999999999999988633 33456777777777 776554
No 228
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.45 E-value=8e-07 Score=76.48 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.1
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAAS-AREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++...++ .++.+|||+|||+|.++..+++. +..+|+++|+++.++.. .+++. ..+.+...|+....+.+.
T Consensus 66 ~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~~------~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 66 ALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQDE------RVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcCC------CeeEeecCCcccCCHhHc
Confidence 4455454 46789999999999999999987 46899999999987765 22211 101222333332111110
Q ss_pred --CCCCccEEEecCCChhhHHHHHHhcccCCcEEEE-ecC
Q 021550 178 --FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS-FSP 214 (311)
Q Consensus 178 --~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~-~~~ 214 (311)
.-..+|++|+...- .+..+.+.|+| |.+++ +-|
T Consensus 138 ~~d~~~~DvsfiS~~~---~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 138 FPDFATFDVSFISLIS---ILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred CCCceeeeEEEeehHh---HHHHHHHHhCc-CeEEEEcCh
Confidence 00367877765332 68889999999 76654 444
No 229
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.43 E-value=2.2e-06 Score=83.29 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=58.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC--CCcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF--PDEF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~--~~~~ 178 (311)
...+|||.|||+|.+...++..+.. ...++++|+++..+..++.++...+..+ +.+...|.....+ ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeecccccccccccccc
Confidence 3458999999999999999887621 2578999999999999999987765222 5555555442111 1111
Q ss_pred CCCccEEEecCC
Q 021550 179 SGLADSIFLDLP 190 (311)
Q Consensus 179 ~~~~D~V~~d~~ 190 (311)
.+.||+|+.|+|
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 257999999887
No 230
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=98.39 E-value=4.8e-06 Score=76.84 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDF---HEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
+.+|++||.+|+|. |.++.++++..+ .+|++++. +++.++.+++ .|... +.....+.. . ... ...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~~-v~~~~~~~~-~-~~~--~~~ 238 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGATY-VNSSKTPVA-E-VKL--VGE 238 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCEE-ecCCccchh-h-hhh--cCC
Confidence 56899999999987 888899999863 58999987 6777776653 45431 211111111 1 111 146
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+||-....+ ..+..+.+.|+++|.++++..
T Consensus 239 ~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEATGVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECcCCH-HHHHHHHHHccCCcEEEEEec
Confidence 99977554433 478889999999999998754
No 231
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.39 E-value=1.9e-06 Score=75.90 Aligned_cols=118 Identities=17% Similarity=0.143 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC-C----CcEEEEEecCCCCC----CCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV-S----SFVTVGVRDIQGQG----FPD 176 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-~----~~v~~~~~D~~~~~----~~~ 176 (311)
.++++.++++|||-|+-++-.-++ +-+.++++||.+..++.|+++...... . -.+.|+.+|..... ++.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 368899999999998876655554 458999999999999999988764321 1 13678888876521 211
Q ss_pred cCCCCccEEEecC---------CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 177 EFSGLADSIFLDL---------PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 177 ~~~~~~D~V~~d~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
. ...||+|-+-. ....-+|.++.+.|+|||.++--.|....+.+-+...
T Consensus 193 ~-dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 193 K-DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred C-CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 1 13499984311 1223478999999999999998888766544444443
No 232
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=98.37 E-value=1.3e-06 Score=80.30 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcE-EEEecCCHHHHhhhhcCCc----
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGF-VYLLAPTPELWTLVLSHRT---- 89 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~---- 89 (311)
.++.||+|+... ...|+.|..|..|....+...+. .|.. ..|.+ -|+..|....+ .++...
T Consensus 74 ~~~vGd~V~~~~--------~~~c~~c~~c~~g~~~~c~~~~~-~g~~---~~G~~aey~~v~~~~~~--~lP~~~s~~~ 139 (347)
T PRK10309 74 DLHPGDAVACVP--------LLPCFTCPECLRGFYSLCAKYDF-IGSR---RDGGNAEYIVVKRKNLF--ALPTDMPIED 139 (347)
T ss_pred CCCCCCEEEECC--------CcCCCCCcchhCcCcccCCCcce-eccC---CCCccceeEEeehHHeE--ECcCCCCHHH
Confidence 478999999865 34588888888887655543211 1110 11222 13333332211 112111
Q ss_pred -eeeecccHHH-HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE
Q 021550 90 -QILYIADISF-VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV 166 (311)
Q Consensus 90 -~~~~~~~~~~-i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~ 166 (311)
..+.+...++ .+....+.++++||..|+|+ |.++.++++..+ ...|++++.+++..+.+++ .|....+....
T Consensus 140 aa~~~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~ 214 (347)
T PRK10309 140 GAFIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSRE 214 (347)
T ss_pred hhhhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcc
Confidence 1111211111 23456678899999999987 888888888863 3457899999988887653 34432122111
Q ss_pred ecCCC--CCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 167 RDIQG--QGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 167 ~D~~~--~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+... ..... ..+|.+++|.......+..+.+.|++||.++++..
T Consensus 215 ~~~~~~~~~~~~---~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 215 MSAPQIQSVLRE---LRFDQLILETAGVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred cCHHHHHHHhcC---CCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 11000 01111 46885566665555688999999999999998754
No 233
>PLN02740 Alcohol dehydrogenase-like
Probab=98.34 E-value=2.9e-06 Score=79.11 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=70.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~~ 178 (311)
...++.+|++||.+|+|+ |.++.++++..+ ..+|+++|.+++.++.+++ .|.+..++.... +..+ .+....
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~-~v~~~~ 265 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHE-RIREMT 265 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHH-HHHHHh
Confidence 456789999999999987 888888888863 3479999999999888864 454332222111 1110 011111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-.... ...+..+...+++| |.++++..
T Consensus 266 ~~g~dvvid~~G~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 266 GGGVDYSFECAGN-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCCEEEECCCC-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 1368987644443 35788888999997 99888754
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.32 E-value=1.7e-07 Score=70.93 Aligned_cols=97 Identities=29% Similarity=0.305 Sum_probs=41.5
Q ss_pred EEEcccccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 113 LESGTGSGSLTTSLARAVAPTG--HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
||+|+..|..+..+++.+.+.+ +++++|..+. .+.+++.++..++.++++++.++..+ .++....+++|++++|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~-~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD-FLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH-HHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH-HHHHcCCCCEEEEEECCC
Confidence 6999999999999988775554 7999999986 34445555556666779999999864 222111268999999986
Q ss_pred Ch----hhHHHHHHhcccCCcEEEE
Q 021550 191 QP----WLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 191 ~~----~~~l~~~~~~LkpgG~lv~ 211 (311)
.. ...+..+.+.|+|||.+++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 43 3567889999999999885
No 235
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=1.5e-05 Score=70.02 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCC
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFP 175 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~ 175 (311)
..++..+.+.|+..++|.--|.|+.+..++..+++.++++++|.++.+++.|++.+...+ .++.+++.++.. ..+.
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 347888999999999999999999999999998777899999999999999999987655 558888887754 1112
Q ss_pred CcCCCCccEEEecC
Q 021550 176 DEFSGLADSIFLDL 189 (311)
Q Consensus 176 ~~~~~~~D~V~~d~ 189 (311)
....+++|.|++|+
T Consensus 91 ~~~i~~vDGiL~DL 104 (314)
T COG0275 91 ELGIGKVDGILLDL 104 (314)
T ss_pred hcCCCceeEEEEec
Confidence 21125788887543
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.31 E-value=7.6e-06 Score=69.32 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=91.8
Q ss_pred EEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC-ccEEEec-C
Q 021550 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL-ADSIFLD-L 189 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~-~D~V~~d-~ 189 (311)
|.||||--|++..+|++. +...+++++|+++.-++.|++++...++.+++++..+|-. ..++. +. .|.|++. +
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL-~~l~~---~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL-EVLKP---GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG-GG--G---GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc-cccCC---CCCCCEEEEecC
Confidence 689999999999999988 4456899999999999999999999999999999999976 34554 43 7888753 3
Q ss_pred CC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC--ceeeEEEeeceeeEEeeee
Q 021550 190 PQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF--TDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 190 ~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f--~~~~~~e~~~r~~~v~~~~ 249 (311)
.. -..+|+.....++....|+ ..|. .....+.++|.+ +| .+...++..-|-|.+....
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lI-LqP~-~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLI-LQPN-THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAE 138 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEE-EEES-S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHHhhHHHhccCCeEE-EeCC-CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEE
Confidence 32 2356666666666555665 4554 457788888888 44 5556666667888887654
No 237
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.31 E-value=5.4e-06 Score=71.56 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
...++||+|+|.|..|..++..+ .+|++.|.|+.|....+ +.|. +++. ..+ +... ...||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~----~vl~--~~~--w~~~-~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGF----TVLD--IDD--WQQT-DFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCC----eEEe--hhh--hhcc-CCceEEEee
Confidence 35689999999999999999885 67999999999965544 4453 3332 221 2211 157999863
Q ss_pred -c----CCChhhHHHHHHhcccCCcEEEE
Q 021550 188 -D----LPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 -d----~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
| ...|...|+.+.+.|+|+|++++
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 2 35788899999999999999876
No 238
>PRK04148 hypothetical protein; Provisional
Probab=98.30 E-value=8.8e-06 Score=63.73 Aligned_cols=100 Identities=19% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHHhcCCCCCCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++...+....+.+|||+|||+|. ++..|++. +..|+++|+++..++.++++ + +++...|+.+..+.-
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~- 74 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI- 74 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH-
Confidence 45555555567899999999997 77666654 57999999999998888764 2 678889987532221
Q ss_pred CCCCccEEEecCCChhhHHHHHHhccc-CCcEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lk-pgG~lv~~ 212 (311)
-+.+|+|+.--|.+. ....+.++-+ -|.-+++.
T Consensus 75 -y~~a~liysirpp~e-l~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 75 -YKNAKLIYSIRPPRD-LQPFILELAKKINVPLIIK 108 (134)
T ss_pred -HhcCCEEEEeCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 157999886444332 3333333332 34455543
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.30 E-value=7.4e-06 Score=72.42 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=79.2
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ 172 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~ 172 (311)
.+..+..+++.+++.+++.|||+|+|.|.+|..+++. ..+++++|+++.+++..++.+. ...+++++.+|+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~---~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR---GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH---SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc---cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence 3455567899999999999999999999999999998 3899999999999999988654 234599999999864
Q ss_pred CCCCcCCCCccEEEecCCChh--hHHHHHHhcccC
Q 021550 173 GFPDEFSGLADSIFLDLPQPW--LAIPSAKKMLKQ 205 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~~~~--~~l~~~~~~Lkp 205 (311)
..+.........|+.+.|-.. .++.++...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecccchHHHHHHHhhcccc
Confidence 443211134567788887432 356666653333
No 240
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=98.29 E-value=7.8e-06 Score=75.52 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC-
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF- 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~- 178 (311)
....++.+|++||..|+|+ |..+.++++..+ ..+|+++|.+++..+.+++ .|.+..++....|... .+....
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~-~i~~~~~ 242 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVE-AIRALTG 242 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHH-HHHHHhC
Confidence 3456788999999999887 888888888863 3469999999998888864 4543212221112111 011001
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ...+..+.+.++++|+++++..
T Consensus 243 ~~g~d~vid~~g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDAVGR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEECC
Confidence 1358987644433 3467888999999999998764
No 241
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=8.6e-06 Score=71.75 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=75.7
Q ss_pred HHHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCC
Q 021550 99 FVIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~ 174 (311)
.+...+++.||++|..+|.|. |...+.-++.. ++++++++|++++..+.|++ .|..+-++.. |..+ +.+
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~--d~~~~i~evi 255 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKE----FGATEFINPK--DLKKPIQEVI 255 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHh----cCcceecChh--hccccHHHHH
Confidence 466778899999999999998 55555556664 68999999999999999985 5665544443 4442 112
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEe
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSF 212 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~ 212 (311)
.+...+.+|.-|-..... +.+.+++...+.| |.-++.
T Consensus 256 ~EmTdgGvDysfEc~G~~-~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 256 IEMTDGGVDYSFECIGNV-STMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHHhcCCceEEEEecCCH-HHHHHHHHHhhcCCCeEEEE
Confidence 233447889877554443 4788888888888 876654
No 242
>PLN02827 Alcohol dehydrogenase-like
Probab=98.28 E-value=8.4e-06 Score=75.99 Aligned_cols=106 Identities=20% Similarity=0.201 Sum_probs=69.3
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~~ 178 (311)
...++.+|++||..|+|+ |.++.++++..+ ...|++++.+++..+.|++ .|.+..+..... +.. ..+.+..
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~-~~v~~~~ 260 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQ-QVIKRMT 260 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHH-HHHHHHh
Confidence 346788999999999987 888888888863 3468899999988887754 454321221110 111 1111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-... ....+..+.+.|++| |.++++..
T Consensus 261 ~~g~d~vid~~G-~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 261 GGGADYSFECVG-DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCCCCEEEECCC-ChHHHHHHHHhhccCCCEEEEECC
Confidence 136898764444 334678899999999 99988754
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.27 E-value=7.1e-06 Score=72.25 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=65.7
Q ss_pred CEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+|+=||+|+=- .++.+++..+.+..|+++|+++++.+.+++.+. ..++...+.++.+|.......- ..||+|++
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl---~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL---KEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-------SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---ccCCEEEE
Confidence 599999999944 445566555567889999999999999998887 5567777999999987532222 57999986
Q ss_pred cC--C----ChhhHHHHHHhcccCCcEEEEec
Q 021550 188 DL--P----QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 d~--~----~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.. . ...+++.++.+.++||+.+++-+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 43 2 55689999999999999998753
No 244
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=98.26 E-value=1.2e-05 Score=73.86 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=66.3
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
+.+++|++||.+|+|+ |.++..+++++.+..+|+++|.+++.++.|++ .+.. . ...+ +.+. ..+
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~-~~~~-----~~~~--~g~ 223 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---Y-LIDD-----IPED--LAV 223 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---e-ehhh-----hhhc--cCC
Confidence 3468899999999987 77777777764345689999999998888764 2221 1 1111 1110 248
Q ss_pred cEEEecCCC--hhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQ--PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~--~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+||-.... ....+..+.+.|+++|+++++..
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 987744442 34578999999999999998753
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.26 E-value=1.5e-05 Score=71.50 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHH--hcC----CCCcEEEEEecCCCCCCCCcC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFE--RTG----VSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~--~~g----~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...+||.+|.|-|.-...+.+. | -.+|+-+|++|+|++.++++.. ..+ .+.+++++..|+.. |-...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~--wlr~a 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY--PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ--WLRTA 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC--CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH--HHHhh
Confidence 345578999999999999998887 5 6899999999999999995432 211 14578888888864 32222
Q ss_pred CCCccEEEecCCChh----------hHHHHHHhcccCCcEEEEe
Q 021550 179 SGLADSIFLDLPQPW----------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~----------~~l~~~~~~LkpgG~lv~~ 212 (311)
.+.||.||.|.|+|. ++...+.+.|+++|.+++-
T Consensus 363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 368999999998874 5677889999999999975
No 246
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.25 E-value=6.4e-06 Score=70.57 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=81.3
Q ss_pred HHHHHhcCCCCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 98 SFVIMYLELVPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 98 ~~i~~~~~~~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
..++..+..+|+. .|.|+|||-+.++. . ....|+++|+.+ + +-+++.+|+...++++
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~--~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V--NERVIACDMRNVPLED 226 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C--CCceeeccccCCcCcc
Confidence 3477777777664 68999999988764 2 247899999842 1 1456788998878887
Q ss_pred cCCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEec--CCHHHHHHHHHHHhh-cCceee
Q 021550 177 EFSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFS--PCIEQVQRSCESLRL-NFTDIR 234 (311)
Q Consensus 177 ~~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~--~~~~~~~~~~~~l~~-~f~~~~ 234 (311)
+++|++++++. +-..++.++.++|++||.+++-. .-...+..+++.+.. ||....
T Consensus 227 ---~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 227 ---ESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ---CcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 89999986543 45578999999999999998742 223445567777766 775433
No 247
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=98.24 E-value=7.8e-06 Score=75.87 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=69.9
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE--ecCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV--RDIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~--~D~~~~~~~~~~ 178 (311)
....+++|++||..|+|+ |.++.++|+.++ ..+|+++|.+++.++.+++ .|.+..++... .+.. ..+.+..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~-~~v~~~~ 252 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQ-EVIVEIT 252 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHH-HHHHHHh
Confidence 456789999999999987 888888898863 3479999999999888864 35433222211 0111 0011111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
.+.+|+||-.... ...+..+.+.++++ |.++++..
T Consensus 253 ~~g~d~vid~~G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 DGGVDYSFECIGN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1368987754443 34678888999886 99987764
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.21 E-value=0.00017 Score=61.86 Aligned_cols=121 Identities=19% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.|++||-+|-.--. +++++ ..+...+|+.+|+++..++..++.+++.|+. ++....|+. .++|+...++||+++.
T Consensus 44 ~gk~il~lGDDDLt-SlA~a-l~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR-~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALA-LTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLR-DPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHH-HHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TT-S---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcHH-HHHHH-hhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccc-ccCCHHHhcCCCEEEe
Confidence 58999999966522 22222 2345689999999999999999999999986 999999998 6888777789999999
Q ss_pred cCCChh----hHHHHHHhcccCCc-EEEE-ecCC---HHHHHHHHHHHhh-cCcee
Q 021550 188 DLPQPW----LAIPSAKKMLKQDG-ILCS-FSPC---IEQVQRSCESLRL-NFTDI 233 (311)
Q Consensus 188 d~~~~~----~~l~~~~~~LkpgG-~lv~-~~~~---~~~~~~~~~~l~~-~f~~~ 233 (311)
|+|... .++......||.-| ..++ ++.. .....++.+.+.+ +|.-.
T Consensus 119 DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 119 DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999654 46788889999666 3332 2221 2333445555555 55533
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.20 E-value=8.3e-06 Score=72.87 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=63.8
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+.-+++.+.+.++..++|.--|.|+.+..+++.+.+ ++++++|.++++++.|++++... .+++.+++.++.+.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHH
Confidence 444555888889999999999999999999999998754 99999999999999998876543 46699999888651
Q ss_pred -CCCCc-CCCCccEEEecCC
Q 021550 173 -GFPDE-FSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~-~~~~~D~V~~d~~ 190 (311)
.+... ....+|.|++|+.
T Consensus 83 ~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHccCCCccCEEEEccc
Confidence 11111 1157999986543
No 250
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.20 E-value=4.3e-06 Score=74.40 Aligned_cols=100 Identities=20% Similarity=0.306 Sum_probs=70.4
Q ss_pred CEEEEEcccccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHH------------------Hhc--------
Q 021550 110 CLVLESGTGSGS----LTTSLARAVAP---TGHVYTFDFHEQRAASAREDF------------------ERT-------- 156 (311)
Q Consensus 110 ~~VLdiG~G~G~----~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~------------------~~~-------- 156 (311)
-+|+.+||++|- +++.+.+..+. ..+|+|.|+++.+++.|++-. ...
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 599999999995 33333443221 357999999999999998731 110
Q ss_pred ----CCCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 157 ----GVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 157 ----g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.+...|.|...|+.+..++.. +.||+|++ +.+....++..+.+.|+|||+|++
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~--~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVP--GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccC--CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 022457788888875444321 68999985 334556799999999999998874
No 251
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=98.19 E-value=1.7e-05 Score=73.58 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
....++.+|++||..|+|. |.++.++++..+ ..+|++++.+++..+.+++ .|....+..... ++. ..+...
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~-~~v~~~ 253 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQ-EVIAEM 253 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHH-HHHHHH
Confidence 3456789999999999887 778888888863 3489999999998887754 454322222111 010 001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
..+.+|+++- .......+..+.+.+++| |.++++..
T Consensus 254 ~~~~~d~vid-~~G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 254 TGGGVDYSFE-CTGNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred hCCCCCEEEE-CCCChHHHHHHHHHhhcCCCEEEEECc
Confidence 1146898664 333344778888999996 99988754
No 252
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.19 E-value=2.7e-06 Score=71.70 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.-.+.||+|+|-|..|..++..+ ..+|..+|..+.+++.|++.+... .....++.+..+.+...++ +.||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~---~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEE---GKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----T---T-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCC---CcEeEEEe
Confidence 34689999999999998776543 579999999999999999876542 1233566666665432222 68999986
Q ss_pred c-----CC--ChhhHHHHHHhcccCCcEEEE
Q 021550 188 D-----LP--QPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d-----~~--~~~~~l~~~~~~LkpgG~lv~ 211 (311)
- +. +..++|.++...|+|+|.|++
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 3 33 335789999999999999987
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.18 E-value=2.5e-06 Score=71.34 Aligned_cols=77 Identities=23% Similarity=0.231 Sum_probs=65.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC----CCCCCcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG----QGFPDEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~----~~~~~~~~~~~D 183 (311)
....|+|.-||.|+.+.+.+.. ...|+++|++|..+..|+.|++..|++++|+|+++|+.+ +.+.. ..+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K---~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADK---IKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhh---heee
Confidence 5578999999999999998887 479999999999999999999999999999999999975 22333 4578
Q ss_pred EEEecCC
Q 021550 184 SIFLDLP 190 (311)
Q Consensus 184 ~V~~d~~ 190 (311)
+|+..+|
T Consensus 168 ~vf~spp 174 (263)
T KOG2730|consen 168 CVFLSPP 174 (263)
T ss_pred eeecCCC
Confidence 8887654
No 254
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=98.18 E-value=1.2e-05 Score=74.68 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
.....+++|++||..|+|. |.++..+++.++ ..+|++++.+++.++.+++ .|.+..++.... +... .+...
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~-~v~~~ 252 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQ-VLVEM 252 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHH-HHHHH
Confidence 3456789999999999887 788888888863 3479999999998887754 454332222111 1110 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~ 214 (311)
..+.+|+|+-.... ...+..+.+.|+++ |+++.+..
T Consensus 253 ~~~g~d~vid~~g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 TDGGVDYTFECIGN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred hCCCCcEEEECCCC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 11468997744433 34788889999987 99988754
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.17 E-value=8.6e-06 Score=72.81 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=73.0
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ- 172 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~- 172 (311)
|-.+..+++.+.+.+|..++|.-+|.|+.+..+++.++ .++|+++|.++.+++.|++++... .+++.++++++.+.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFF 82 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHH
Confidence 33444578888899999999999999999999999875 499999999999999999988654 35699999888651
Q ss_pred -CCCCcCCCCccEEEecCC
Q 021550 173 -GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 -~~~~~~~~~~D~V~~d~~ 190 (311)
.+......++|.|++|+.
T Consensus 83 ~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 83 EHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHhcCCCcccEEEEecc
Confidence 121111146999987653
No 256
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=98.14 E-value=2.9e-05 Score=70.96 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+++++|++||..|+|+ |.++.++++.. +.+|++++.+++.++.|++ .|.+..++ ... ...
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~--~~~--- 221 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYD--TPP--- 221 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----ccc--cCc---
Confidence 4457789999999999876 77778888886 3579999999998877765 46543121 111 111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++...... ..+..+.+.|++||+++++..
T Consensus 222 ~~~d~~i~~~~~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPAG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCcH-HHHHHHHHhhCCCcEEEEEec
Confidence 4578766433333 478899999999999998764
No 257
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=98.14 E-value=2.7e-05 Score=72.06 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCC------CCceEEccCCcEE-EEecCCHHHHhhhhcC
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKP------FGSMVFSNKGGFV-YLLAPTPELWTLVLSH 87 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~------~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~ 87 (311)
.+++||+|++... ...||.|..|+.|....++-.... .|.. ..|.+. |+..|....+ .++.
T Consensus 87 ~~~vGdrV~~~~~-------~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~---~~G~~aey~~v~~~~~~--~lP~ 154 (360)
T PLN02586 87 KFKEGDRVGVGVI-------VGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTK---NYGGYSDMIVVDQHFVL--RFPD 154 (360)
T ss_pred ccCCCCEEEEccc-------cCcCCCCccccCCCcccCCCccccccccccCCCc---CCCccceEEEEchHHee--eCCC
Confidence 3788999976442 224888999988876665422110 0111 122221 4444432211 1121
Q ss_pred Cc-----eeeecccH-H-HHHH-hcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 021550 88 RT-----QILYIADI-S-FVIM-YLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV 158 (311)
Q Consensus 88 ~~-----~~~~~~~~-~-~i~~-~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~ 158 (311)
.. ..+..... + ..+. ...+.+|++||..|+|. |.++.++++..+ .++++++.+++....+. ...|.
T Consensus 155 ~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~---~~~Ga 229 (360)
T PLN02586 155 NLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAI---NRLGA 229 (360)
T ss_pred CCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHH---HhCCC
Confidence 11 11111110 0 1222 23457899999999987 888888999863 57888887765433221 12454
Q ss_pred CCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 159 SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 159 ~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+..+.. .+. ..+.... +.+|+||-... ....+..+.+.|+++|.++.+..
T Consensus 230 ~~vi~~--~~~--~~~~~~~-~~~D~vid~~g-~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 230 DSFLVS--TDP--EKMKAAI-GTMDYIIDTVS-AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred cEEEcC--CCH--HHHHhhc-CCCCEEEECCC-CHHHHHHHHHHhcCCcEEEEeCC
Confidence 321111 111 0111111 35899774443 33468889999999999998753
No 258
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.13 E-value=2.9e-05 Score=74.52 Aligned_cols=128 Identities=15% Similarity=0.170 Sum_probs=97.6
Q ss_pred ceeeecccHH-HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 89 TQILYIADIS-FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 89 ~~~~~~~~~~-~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
.+.+.|..+. .|+..+.+.+..+|+|..||+|++....++.++. ...++|.|+++.....|+.|+-.+|+...+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 5677777766 4778888888889999999999999888888743 36799999999999999999999888633566
Q ss_pred EEecCCCCCCCC--cCCCCccEEEecCCCh------------------------------hhHHHHHHhcccCCcEEEEe
Q 021550 165 GVRDIQGQGFPD--EFSGLADSIFLDLPQP------------------------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 165 ~~~D~~~~~~~~--~~~~~~D~V~~d~~~~------------------------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+|....+... ...+.||.|+.++|-. +.+++++...|+|||+..++
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 677665443331 1225799998776621 46789999999998877766
Q ss_pred cCCH
Q 021550 213 SPCI 216 (311)
Q Consensus 213 ~~~~ 216 (311)
.|..
T Consensus 326 l~~g 329 (489)
T COG0286 326 LPDG 329 (489)
T ss_pred ecCC
Confidence 5543
No 259
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.10 E-value=1e-05 Score=71.11 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=72.8
Q ss_pred CCEEEEEcccccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHh-----c----------------C--
Q 021550 109 GCLVLESGTGSGS----LTTSLARAVA----PTGHVYTFDFHEQRAASAREDFER-----T----------------G-- 157 (311)
Q Consensus 109 g~~VLdiG~G~G~----~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~-----~----------------g-- 157 (311)
.-+|+-+||++|- +++.+.+..+ ...+|++.|++...++.|+.-.-. . +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 4689999999994 5555556553 257899999999999999861100 0 1
Q ss_pred -----CCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 -----~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+...|.|...|+....+.. +.||+||+ |.+....++...+..|+|||.|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~---~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFL---GKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCcccc---CCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1234667777777544322 78999984 566777899999999999999985
No 260
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.09 E-value=9.3e-05 Score=64.91 Aligned_cols=120 Identities=12% Similarity=0.164 Sum_probs=87.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V 185 (311)
..-+||||.||.|...+.++..... ...|...|+++..++..++.++..|+.+.++|.++|+.+. .+.. .....+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~-l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA-LDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc-cCCCCCEE
Confidence 4568999999999988888777532 2688999999999999999999999999779999999762 1221 11346777
Q ss_pred Eec-----CCChh---hHHHHHHhcccCCcEEEEe-cCCHHHHHHHHHHHhh
Q 021550 186 FLD-----LPQPW---LAIPSAKKMLKQDGILCSF-SPCIEQVQRSCESLRL 228 (311)
Q Consensus 186 ~~d-----~~~~~---~~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~l~~ 228 (311)
++. .++.. ..+..+..++.|||+++.- .|...|++-+...|..
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 642 23322 4678889999999999842 2344555555555543
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.08 E-value=4e-05 Score=61.16 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCcEEEEEecCCCCCCCCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTG--VSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+...|+|+|||-|+++..++..+ .+..+|+++|.++..++.+.++....+ ...++.+...+..... .. .
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SS---D 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-cc---C
Confidence 3677899999999999999999833 357899999999999999999888776 4344666665554211 12 4
Q ss_pred CccEEE-ecC--CChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 181 LADSIF-LDL--PQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 181 ~~D~V~-~d~--~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..++++ ++. .-...+++.+.+ ++..+++.+||-
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 456655 221 222234555444 777777777763
No 262
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.08 E-value=2.8e-06 Score=71.48 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCEEEEEcccccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHH--------------HHh-----cC---
Q 021550 108 PGCLVLESGTGSGS----LTTSLARAVA---P-TGHVYTFDFHEQRAASARED--------------FER-----TG--- 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~----~~~~la~~~~---~-~~~v~~vD~~~~~~~~a~~~--------------~~~-----~g--- 157 (311)
+.-+|+.+||++|- +++.+.+... + ..+|+|.|+|+.+++.|++- ..+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44689999999995 3333334221 1 35899999999999999871 000 01
Q ss_pred -----CCCcEEEEEecCCCCCCCCcCCCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEE
Q 021550 158 -----VSSFVTVGVRDIQGQGFPDEFSGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 158 -----~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+.|.|...|+.+...+. +.||+|++ +.+....+++.+.+.|+|||+|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~---~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPF---GRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCccc---CCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1245889999988512222 78999985 334456789999999999999995
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.07 E-value=2.4e-05 Score=61.69 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=56.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEEecCC--------------ChhhHHHH
Q 021550 135 HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLDLP--------------QPWLAIPS 198 (311)
Q Consensus 135 ~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~--------------~~~~~l~~ 198 (311)
+|+++|+.+++++.+++++...+..++++++..+-.. ..+++ +.+|++++|.. ....+++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~---~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE---GPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-----EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc---CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 6999999999999999999999988889998876543 22332 48999998643 12368999
Q ss_pred HHhcccCCcEEEEec
Q 021550 199 AKKMLKQDGILCSFS 213 (311)
Q Consensus 199 ~~~~LkpgG~lv~~~ 213 (311)
+++.|+|||.+++..
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999987643
No 264
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.05 E-value=3.5e-05 Score=71.98 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec-CCC--CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQG--QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D-~~~--~~~~~~ 177 (311)
..+.+.++.+||..|+|+ |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ... ..+..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~- 251 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTG- 251 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcC-
Confidence 566788999999999998 889999999873 356999999999988887642 21 112222221 111 01111
Q ss_pred CCCCccEEEecC--------------------CChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDL--------------------PQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~--------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.. +++...+..+.+.|+++|.++.+..
T Consensus 252 -~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 252 -GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred -CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 13689876433 2234578999999999999998754
No 265
>PRK10742 putative methyltransferase; Provisional
Probab=98.04 E-value=2.6e-05 Score=67.28 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=71.8
Q ss_pred HHHHhcCCCCCC--EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc------C--CCCcEEEEEec
Q 021550 99 FVIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT------G--VSSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g--~~~~v~~~~~D 168 (311)
.+++.+++++|. +|||+-+|+|..+..++.+ +++|+++|.++......+.++... + +..+++++++|
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 478888999988 9999999999999999987 567999999999999999988874 2 12458888888
Q ss_pred CCCCCCCCcCCCCccEEEecCCChh
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPW 193 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~ 193 (311)
... .+.. ....||+|++|++-|.
T Consensus 154 a~~-~L~~-~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLT-ALTD-ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHH-HHhh-CCCCCcEEEECCCCCC
Confidence 864 2221 1147999999998554
No 266
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.01 E-value=1.8e-05 Score=72.78 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec---CCCCCCCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD---IQGQGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D---~~~~~~~~ 176 (311)
+...++.+|++||..|+|+ |..+..+++..+ .+|++++.+++.++.+++ .|.+..+.....+ +.+ .+..
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~-~~~~ 231 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKK-LIKA 231 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHH-HHHh
Confidence 3446788999999999987 888888898863 579999999998888764 3543222221111 110 0000
Q ss_pred cC-CCCcc----EEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EF-SGLAD----SIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~-~~~~D----~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ...+| .|+ +.......+..+.+.|++||+++++..
T Consensus 232 ~t~~~g~d~~~d~v~-d~~g~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 232 FAKARGLRSTGWKIF-ECSGSKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred hcccCCCCCCcCEEE-ECCCChHHHHHHHHHHhcCCeEEEECc
Confidence 00 12454 544 544444578888999999999998754
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.98 E-value=1.4e-05 Score=71.18 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=88.1
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHhcCC-CCcEEEEEecCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAA-------SAREDFERTGV-SSFVTVGVRDIQG 171 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~g~-~~~v~~~~~D~~~ 171 (311)
+...+.++||+.|+|--.|||.+....+.. ++.|+|.||+-.++. ..+.|++..|. +.-+.++.+|...
T Consensus 200 ~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 556777999999999999999998887776 689999999887766 34667887774 3346788899987
Q ss_pred CCCCCcCCCCccEEEecCCCh--------------------------------------hhHHHHHHhcccCCcEEEEec
Q 021550 172 QGFPDEFSGLADSIFLDLPQP--------------------------------------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~--------------------------------------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.++... ..||+|++|+|-- ...|.-..+.|.-||+++++.
T Consensus 277 ~~~rsn--~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 277 PPLRSN--LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cchhhc--ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 666542 6899999998811 135677788999999999988
Q ss_pred CCH
Q 021550 214 PCI 216 (311)
Q Consensus 214 ~~~ 216 (311)
|+.
T Consensus 355 p~~ 357 (421)
T KOG2671|consen 355 PTI 357 (421)
T ss_pred Cch
Confidence 854
No 268
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.97 E-value=3.2e-05 Score=63.76 Aligned_cols=106 Identities=25% Similarity=0.225 Sum_probs=75.8
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...=..-.|++|||+|+|+|..++..++. +...|++.|+.+......+-|.+.+++. +.+...|... .+
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g---~~--- 140 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG---SP--- 140 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC---CC---
Confidence 333334456899999999999999888877 5789999999999999889898888854 7788777652 43
Q ss_pred CCccEEEe-----cCCChhhHHHHHHhcccC-CcEEEEecCCH
Q 021550 180 GLADSIFL-----DLPQPWLAIPSAKKMLKQ-DGILCSFSPCI 216 (311)
Q Consensus 180 ~~~D~V~~-----d~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~ 216 (311)
..||+++. +-+.....++ ....|+. |-.+++..|..
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 67999874 2233334555 5555554 44555566644
No 269
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=97.97 E-value=0.00012 Score=67.89 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=70.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC--CCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI--QGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~~ 177 (311)
.....+.+|++||..|+|+ |..+..+++..+ ..+|++++.+++..+.+++ .|.+..+.....+. .. .+.+.
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~-~~~~~ 250 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSE-VIREM 250 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHH-HHHHH
Confidence 3456788999999999887 778888888863 3479999999998888754 35433222211110 10 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCC-cEEEEecCC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQD-GILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lkpg-G~lv~~~~~ 215 (311)
..+.+|+|+-.... ...+..+.+.|+++ |.++.+...
T Consensus 251 ~~~g~d~vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 251 TGGGVDYSFECTGN-ADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred hCCCCCEEEECCCC-hHHHHHHHHhcccCCCEEEEEcCC
Confidence 11468997744433 34778889999886 999887543
No 270
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.93 E-value=6.2e-05 Score=69.23 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=70.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
+....++++++||..|+|+ |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.....+.... .+..
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~- 232 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTG- 232 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhC-
Confidence 4556788999999999886 788888888863 3479999999988877764 45432122111111110 0111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-.... ...+..+.+.|+++|+++.+..
T Consensus 233 -~~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 233 -GKGVDAVIIAGGG-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred -CCCCcEEEECCCC-HHHHHHHHHHhhcCCEEEEecc
Confidence 1469987754443 3478899999999999987653
No 271
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.90 E-value=3.1e-05 Score=71.12 Aligned_cols=104 Identities=22% Similarity=0.215 Sum_probs=88.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
....|+..++++|||-|.....++.. ....+++++.++..+..+.......++.+.-.++..|+...++++ ..||
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed---n~fd 180 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED---NTFD 180 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc---cccC
Confidence 35678889999999999999988877 368999999999988888887777777776777888888777887 7888
Q ss_pred EEE-----ecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 184 SIF-----LDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~-----~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+- .+.|.++.++.++.++++|||.++++
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 874 36789999999999999999999974
No 272
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.89 E-value=0.00014 Score=65.80 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCC-C-CCC-cC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ-G-FPD-EF 178 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~-~-~~~-~~ 178 (311)
+.++..++|+|||+|.-+..|++.+.+ ...++++|+|.++++.+.+++.....+. .+.-+.+|..+. . ++. ..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 457779999999999999888887732 3578999999999999999887333433 244478887641 1 111 01
Q ss_pred CCCccEEEe------cCC--ChhhHHHHHHh-cccCCcEEEEe
Q 021550 179 SGLADSIFL------DLP--QPWLAIPSAKK-MLKQDGILCSF 212 (311)
Q Consensus 179 ~~~~D~V~~------d~~--~~~~~l~~~~~-~LkpgG~lv~~ 212 (311)
.....+++. |.+ ....+|.++.+ .|+||+.|++-
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 123455553 222 22357888888 99999999873
No 273
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=66.62 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.-..++||||+-|.+..++... +-.+++.+|.|-.|++.++..- ..++ ......+|-+...+.+ .++|+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~e---ns~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKE---NSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccc---cchhhhhh
Confidence 3458999999999999888776 3578999999999999887531 1122 1445566766566776 89999997
Q ss_pred cCCChh-----hHHHHHHhcccCCcEEEE
Q 021550 188 DLPQPW-----LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 d~~~~~-----~~l~~~~~~LkpgG~lv~ 211 (311)
.+...| ..+.++...|||.|.|+.
T Consensus 144 SlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 665544 578899999999999875
No 274
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=97.88 E-value=8.9e-05 Score=67.70 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=67.8
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+.+.++++||..|+|. |..+..+++.+ +.+++.++.+++..+.+++ .|.+..+.....+... .+... .
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-~~~~~--~ 227 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAE-ALQEL--G 227 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHH-HHHhc--C
Confidence 445788999999999876 77888888886 3579999999888777754 3543212211112111 11111 3
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-... ....+..+.+.|+++|.++.+..
T Consensus 228 ~~d~vi~~~g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 228 GAKLILATAP-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CCCEEEECCC-chHHHHHHHHHcccCCEEEEEec
Confidence 4898774332 23478889999999999998754
No 275
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=4.6e-05 Score=62.69 Aligned_cols=108 Identities=22% Similarity=0.252 Sum_probs=67.9
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHH--HHHHhcCCCCcEEEEEecCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQR----AASAR--EDFERTGVSSFVTVGVRDIQGQG 173 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~----~~~a~--~~~~~~g~~~~v~~~~~D~~~~~ 173 (311)
++...+++||++|+|+=.|.|.+|..++..+++.+.|+++-..+.. .+..+ ....+....| ++.+..+.....
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN-~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN-VEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh-hhhhCCcccccC
Confidence 5677889999999999999999999999999999999987433220 01011 1111112222 444333333222
Q ss_pred CCCcCCCCccEEEe------------cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 174 FPDEFSGLADSIFL------------DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 174 ~~~~~~~~~D~V~~------------d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+. +..|+++. +......+...+.+.|||||.+++.
T Consensus 119 -~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 -AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred -CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 22 34455432 2223345678899999999999875
No 276
>PRK10083 putative oxidoreductase; Provisional
Probab=97.84 E-value=0.00028 Score=64.46 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
+....++.+|++||..|+|. |..+.++++...+...+++++.+++..+.+++ .|.+..+.....+.. ..+...
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~-~~~~~~- 225 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEPLG-EALEEK- 225 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHH-HHHhcC-
Confidence 34566788999999999876 66777777753234568889999988877764 354322222221211 111110
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+||-.... ...+..+.+.|+++|.++.++.
T Consensus 226 g~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 226 GIKPTLIIDAACH-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1235675543332 3468888999999999998754
No 277
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.84 E-value=7.5e-05 Score=59.41 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=50.8
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
++||+|||.|.++..+++.. +..+++++|.++.+++.+++++..++..+ +.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 48999999999999998874 56799999999999999999999888765 8888776653
No 278
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.79 E-value=6e-05 Score=70.73 Aligned_cols=94 Identities=23% Similarity=0.385 Sum_probs=60.9
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTF---DFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~v---D~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.+||+|||+|.++.+|+.+ +..+.++ |..+..++.|.+ .|+...+.+ .+.- ..+++. ..||+|-+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----RGvpa~~~~-~~s~-rLPfp~---~~fDmvHc 187 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----RGVPAMIGV-LGSQ-RLPFPS---NAFDMVHC 187 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----cCcchhhhh-hccc-cccCCc---cchhhhhc
Confidence 5799999999999999877 3333333 333445555543 365442221 1222 277887 89999853
Q ss_pred c-CCChh-----hHHHHHHhcccCCcEEEEecCCH
Q 021550 188 D-LPQPW-----LAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 188 d-~~~~~-----~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
. .-.+| -+|-++-++|+|||+++...|..
T Consensus 188 src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 188 SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 2 12222 36788999999999999877754
No 279
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=97.76 E-value=0.0002 Score=65.56 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~ 177 (311)
.....+.++.+||..|+|. |..+.++++..+ ..++++++.++.....+++ .|.+..+.....+... ..+..
T Consensus 159 ~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~- 232 (345)
T cd08286 159 VLNGKVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD- 232 (345)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC-
Confidence 3455678899999988876 677777888863 3678889998887776653 3543323322222111 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 233 -~~~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 233 -GRGVDVVIEAVGI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred -CCCCCEEEECCCC-HHHHHHHHHhccCCcEEEEecc
Confidence 1469987754433 3367888899999999998754
No 280
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=97.72 E-value=0.00022 Score=65.53 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=69.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+...++.++.+||..|+|. |..+.++++..+ ..+|++++.+++..+.+++ .|.+..+.....+..+ .+.+...
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G-~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~-~l~~~~~ 238 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAG-ASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVA-EVRKLTG 238 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHH-HHHHHhC
Confidence 4567788999999999876 778888888862 3389999999988877754 3443212212222111 0111111
Q ss_pred -CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 -GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 -~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-.... ...++.+.+.|+++|.++.+..
T Consensus 239 ~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGV-QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHhccCCCEEEEEcc
Confidence 359997754433 3467889999999999998754
No 281
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.70 E-value=0.00026 Score=63.91 Aligned_cols=87 Identities=22% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+|.++||+||++|+++..++++ +.+|+++|..+ +... +. .+.+|.....|.... .+. .+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~~----L~---~~~~V~h~~~d~fr~-~p~--~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQS----LM---DTGQVEHLRADGFKF-RPP--RKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCHh----hh---CCCCEEEEeccCccc-CCC--CCCCCEE
Confidence 468999999999999999999988 46999999654 2111 11 123488888877532 221 2789999
Q ss_pred EecCCC-hhhHHHHHHhcccCC
Q 021550 186 FLDLPQ-PWLAIPSAKKMLKQD 206 (311)
Q Consensus 186 ~~d~~~-~~~~l~~~~~~Lkpg 206 (311)
++|+.. |....+.+.+.|..|
T Consensus 275 VcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEecccCHHHHHHHHHHHHhcC
Confidence 999864 556677778888766
No 282
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.69 E-value=0.00079 Score=59.88 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=65.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
...+|||+|+|+|..+.++...++.-..++++|.|+.+++.++..+....... ......+......+- ...|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~---~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWRRVLYRDFLPF---PPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhhhhhhcccccC---CCCcEEEE
Confidence 34699999999999887777777545789999999999999988765432111 110111111111111 23499874
Q ss_pred -----cCCC--hhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 188 -----DLPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 188 -----d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
.+++ ...+++.+.+.+.+ .|+++.|....
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 2333 23466667666655 88888776543
No 283
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.68 E-value=0.00016 Score=67.06 Aligned_cols=103 Identities=22% Similarity=0.223 Sum_probs=78.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCCCC-CCcCCCCccEE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQGF-PDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~~~-~~~~~~~~D~V 185 (311)
.+-+|||.=+|+|.=++..+..+.+..+|+.-|+++++++..++|++.+++.+ .+++.+.|+...-. .. ..||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~---~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQ---ERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHST---T-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhcc---ccCCEE
Confidence 34589999999999999999887666899999999999999999999999987 68999999874211 23 789999
Q ss_pred EecCC-ChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLP-QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~-~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
=+|+- .|..+|+.+.+.++.||.|++-.
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 88874 56679999999999999999843
No 284
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=97.67 E-value=0.00038 Score=64.25 Aligned_cols=107 Identities=19% Similarity=0.158 Sum_probs=66.2
Q ss_pred HhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCC-
Q 021550 102 MYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPD- 176 (311)
Q Consensus 102 ~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~- 176 (311)
..+.. .++.+||..|+|. |..+..+++.++ ..+|++++.+++..+.+++ .|.+..+.....+... ..+..
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAG-ARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHH
Confidence 33443 4899999999876 778888888863 2389999988887766643 4543212211111100 00100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 245 ~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 245 TGGRGADVVIEASGH-PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred hCCCCCcEEEECCCC-hHHHHHHHHHhccCCEEEEEcC
Confidence 011469987754332 3467888999999999998764
No 285
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=97.67 E-value=0.00011 Score=64.23 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=67.1
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
..+.++.+||..|+|+ |..+..+++.. +.+|++++.+++..+.+++. +....+.....+... .+.....+.+
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~-~~~~~~~~~~ 202 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEE-ELRLTGGGGA 202 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHH-HHHHhcCCCC
Confidence 3348899999999996 77778888875 37899999998877776542 322211111111100 0000011569
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
|+++...... ..+..+.+.|+++|.++.++..
T Consensus 203 d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVGGP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCCCH-HHHHHHHHhcccCCEEEEEccC
Confidence 9988665542 4678889999999999987643
No 286
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00044 Score=57.93 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~ 184 (311)
.+|.+||++|-|.|.....+.++ +-.+-+.+|..++.++..++.. ..-..+|.+..+-.++ ..+++ +.||.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~d---~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLPD---KHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhccccc---cCcce
Confidence 68899999999999988877776 3456667899999988777652 1223346666654432 34555 77999
Q ss_pred EEecCC-----ChhhHHHHHHhcccCCcEEEEec
Q 021550 185 IFLDLP-----QPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 185 V~~d~~-----~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|+.|.- +.|.+.+.+.++|||+|.+-.+-
T Consensus 173 I~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 173 IYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 998764 45678899999999999997653
No 287
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.63 E-value=0.00022 Score=60.02 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=63.3
Q ss_pred ecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC
Q 021550 93 YIADISFVIMYLELVPGCLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI 169 (311)
Q Consensus 93 ~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~ 169 (311)
+|.|+..+-+++--.+.+.|+|+|.-.|+.+...|. .+++.++|+++|++-..... +..+.+....+|+++++|.
T Consensus 17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-S
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCC
Confidence 455555443433323458999999999988877654 44577999999996443221 1122344556799999998
Q ss_pred CCCC----CCCc-CCCCccEEEecCC----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 170 QGQG----FPDE-FSGLADSIFLDLP----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 170 ~~~~----~~~~-~~~~~D~V~~d~~----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.. .... ......+|+.|.. .-.+.|+....++++|+++++...
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 7511 1110 0134557787765 334577888999999999998544
No 288
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.62 E-value=0.0019 Score=54.47 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=100.9
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+.+.++.|+||--+++..++.+. ++...+++.|+++..++.|.+++..+++..++++..+|.. ..+... ..+|.|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl-~~l~~~--d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL-AVLELE--DEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc-cccCcc--CCcCEEE
Confidence 45566999999999999999987 5778999999999999999999999999998999999986 455441 4789887
Q ss_pred e-cCCCh--hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cC--ceeeEEEeeceeeEEeeee
Q 021550 187 L-DLPQP--WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NF--TDIRTFEILLRTYEIRQWR 249 (311)
Q Consensus 187 ~-d~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f--~~~~~~e~~~r~~~v~~~~ 249 (311)
+ .+... ..+|++..+.|+.=-+++ ..|. .+...+.++|.. +| .....+|...+-|++..-+
T Consensus 91 IAGMGG~lI~~ILee~~~~l~~~~rlI-LQPn-~~~~~LR~~L~~~~~~I~~E~ileE~~kiYEIlv~e 157 (226)
T COG2384 91 IAGMGGTLIREILEEGKEKLKGVERLI-LQPN-IHTYELREWLSANSYEIKAETILEEDGKIYEILVVE 157 (226)
T ss_pred EeCCcHHHHHHHHHHhhhhhcCcceEE-ECCC-CCHHHHHHHHHhCCceeeeeeeecccCeEEEEEEEe
Confidence 5 44433 246666666666443454 4554 345677788877 34 5555566656667777543
No 289
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=97.60 E-value=0.00048 Score=62.98 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=65.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.++...+.+++ .+....+.....+... .....
T Consensus 161 ~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~- 234 (347)
T cd05278 161 ELAGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGG- 234 (347)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCC-
Confidence 445678899999988764 777788888863 2478888888877766654 2332212222211111 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ....+..+.+.|+++|+++.++
T Consensus 235 --~~~d~vld~~g-~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 --RGVDCVIEAVG-FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred --CCCcEEEEccC-CHHHHHHHHHHhhcCCEEEEEc
Confidence 46898774333 2247888999999999998765
No 290
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=97.59 E-value=0.00038 Score=64.80 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQR-AASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.+|++||..|+|. |.++.++|+.++ .+|++++.+++. .+.++ ..|.+..+... +. ..+.+.. +.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~----~lGa~~~i~~~--~~--~~v~~~~-~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAID----RLGADSFLVTT--DS--QKMKEAV-GTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHH----hCCCcEEEcCc--CH--HHHHHhh-CCCcE
Confidence 5899999999987 888888999873 578888877553 44443 34543211111 10 0111111 34898
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+-.... ...+..+.+.|+++|.++.+..
T Consensus 246 vid~~G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 246 IIDTVSA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred EEECCCc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 7754433 3367888999999999998753
No 291
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=97.57 E-value=0.00076 Score=62.30 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..+|++||..|+|+ |.++.++++..+ .+++.++.+++....+.+ ..|.+..+. ..+. ..+.... ..+|+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~---~~Ga~~~i~--~~~~--~~~~~~~-~~~D~ 247 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALE---HLGADDYLV--SSDA--AEMQEAA-DSLDY 247 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH---hcCCcEEec--CCCh--HHHHHhc-CCCcE
Confidence 46899999999887 888888998863 578888888776554433 245432111 1111 1111111 35898
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
||-.... ...+..+.+.|+++|+++.+..
T Consensus 248 vid~~g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 248 IIDTVPV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EEECCCc-hHHHHHHHHHhccCCEEEEECC
Confidence 7754442 2477888999999999998754
No 292
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=97.57 E-value=0.00067 Score=63.10 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=64.8
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec--CCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD--IQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D--~~~~~~~~~ 177 (311)
....+++++++||..|+|. |..+..+++..+ ..+|+.++.+++..+.+++ .|.+..+.....+ .. ..+...
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~-~~v~~~ 256 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAG-ASRIIAVDINKDKFAKAKE----LGATECINPQDYKKPIQ-EVLTEM 256 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEecccccchhHH-HHHHHH
Confidence 4557788999999998876 777777788753 2389999999988877753 3543222222111 11 001000
Q ss_pred CCCCccEEEecCCChhhHHHHHHh-cccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKK-MLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~-~LkpgG~lv~~~~ 214 (311)
..+.+|+|+-.... ...+..+.. .++++|.++.+..
T Consensus 257 ~~~~~d~vld~~g~-~~~~~~~~~~~~~~~G~~v~~g~ 293 (373)
T cd08299 257 TDGGVDFSFEVIGR-LDTMKAALASCHEGYGVSVIVGV 293 (373)
T ss_pred hCCCCeEEEECCCC-cHHHHHHHHhhccCCCEEEEEcc
Confidence 11458986643333 335566444 4568999998764
No 293
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=97.56 E-value=0.00061 Score=63.60 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe---cCCCCCCCCcCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR---DIQGQGFPDEFS 179 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~---D~~~~~~~~~~~ 179 (311)
.++.+|++||..|+|. |..++.+++..+ ..+|++++.+++..+.+++ .|.+..+..... +...........
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g 273 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKG 273 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCC
Confidence 5788999999998877 777788888863 3379999998887666654 354321221111 111000000011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-....+...+..+.+.|+++|+++.++.
T Consensus 274 ~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECC
Confidence 46998875544444578899999999999998754
No 294
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.56 E-value=0.00022 Score=64.88 Aligned_cols=105 Identities=23% Similarity=0.236 Sum_probs=67.7
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++++||..|+|. |..+..+++.. +.+|++++.+++..+.+++ .+....+.....+.. ..+......
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~ 231 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK-DKKAAGLGG 231 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH-HHHHHhcCC
Confidence 445688899999988875 88888889886 4679999999988877754 344221111100100 000001115
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+|+-.. .....+..+.+.|+++|.++.++.
T Consensus 232 ~~D~vid~~-g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 232 GFDVIFDFV-GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CceEEEECC-CCHHHHHHHHHHhhcCCEEEEECC
Confidence 699866433 334478889999999999998754
No 295
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=97.53 E-value=0.00048 Score=63.83 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=68.7
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++++||..|+|. |.++..+++..+ ...+++++.+++..+.+++ .+....+.....+... .+......
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~~ 253 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVA-AIREITGG 253 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCC
Confidence 456678899999999876 788888888863 3479999999988777654 3432211111111110 01000115
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 254 ~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 254 GVDYALDTTGV-PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred CCcEEEECCCC-cHHHHHHHHHhccCCEEEEeCc
Confidence 68997754433 2367899999999999998764
No 296
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=97.53 E-value=0.0015 Score=60.55 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=69.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe--cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR--DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~--D~~~~~~~~~ 177 (311)
....++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|....+..... +... .+...
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~-~l~~~ 249 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVE-VLTEM 249 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHH-HHHHH
Confidence 4556788999999999876 778888888863 3458889988888877753 344332222222 1111 00000
Q ss_pred CCCCccEEEecCCChhhHHHHHHhccc-CCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLK-QDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~Lk-pgG~lv~~~~ 214 (311)
..+.+|+|+-... ....+..+.+.|+ ++|.++.+..
T Consensus 250 ~~~~~d~vid~~g-~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 250 TDGGVDYAFEVIG-SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred hCCCCcEEEECCC-CHHHHHHHHHHhccCCCEEEEEec
Confidence 1146899774433 2347888899999 9999997654
No 297
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0004 Score=60.87 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=92.7
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCcEEEEEecCCC--CCCCCcCCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--GV-SSFVTVGVRDIQG--QGFPDEFSG 180 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~-~~~v~~~~~D~~~--~~~~~~~~~ 180 (311)
+...++||.+|.|-|......+++ .--..+..+|++...++..++.+... |. ...+.++.+|... ....+ +
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~---~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE---N 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc---C
Confidence 455689999999999988877777 33478899999999999999887653 22 2458888888753 22333 7
Q ss_pred CccEEEecCCChh---------hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 181 LADSIFLDLPQPW---------LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 181 ~~D~V~~d~~~~~---------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
.||+|+.|..+|. .+++.+.+.||++|+++....|..-..++.+.+++
T Consensus 195 ~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~ 251 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRS 251 (337)
T ss_pred CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHH
Confidence 8999998876653 46788999999999999998888877777777766
No 298
>PLN02702 L-idonate 5-dehydrogenase
Probab=97.51 E-value=0.00049 Score=63.67 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE--EecCCCC--CCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG--VRDIQGQ--GFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~--~~D~~~~--~~~~ 176 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.+. ..+.... .+..
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhh
Confidence 566788999999998875 778888888863 3468889998887776654 3543312111 1111100 0100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+.+|+|+-.... ...+..+.+.|+++|.++.+..
T Consensus 250 ~~~~~~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 250 AMGGGIDVSFDCVGF-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred hcCCCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEcc
Confidence 111468987654443 3478999999999999998764
No 299
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.50 E-value=0.002 Score=57.29 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=68.4
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEE-EecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVG-VRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~-~~D~~~~~~~~~ 177 (311)
.+...++.||.+|-.+|.|. |.++..+|+++ +.+|+++|.+...-+.|-+ ..|.+.-+.+. ..|..+ .+...
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~-~~~~~ 246 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMK-AIMKT 246 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHH-HHHHh
Confidence 45667788999999999887 99999999998 5899999998755444433 45655423332 222221 11111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..|.|. +. ....++.+..+||++|.+++.
T Consensus 247 ~dg~~~~v~-~~--a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 247 TDGGIDTVS-NL--AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred hcCcceeee-ec--cccchHHHHHHhhcCCEEEEE
Confidence 113444433 22 233678899999999999975
No 300
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00056 Score=58.38 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=70.9
Q ss_pred HHHhcCC-CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCCCc
Q 021550 100 VIMYLEL-VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFV-TVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~-~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v-~~~~~D~~~~~~~~~ 177 (311)
+++..++ .+|..+||+|+.||++|..++++ ++.+|+++|..-..+..--+ .+.++ .....|+.. ..++.
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~-l~~~~ 140 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY-LTPED 140 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh-CCHHH
Confidence 4455554 45788999999999999999988 57999999998765443221 12223 334445543 12222
Q ss_pred CCCCccEEEecCC--ChhhHHHHHHhcccCCcEEEEe
Q 021550 178 FSGLADSIFLDLP--QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 178 ~~~~~D~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..+..|++++|.. ....+|..+..++++++.++..
T Consensus 141 ~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 141 FTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred cccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEE
Confidence 2246789988764 5556889999999999887653
No 301
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.45 E-value=0.0027 Score=49.91 Aligned_cols=98 Identities=31% Similarity=0.308 Sum_probs=65.0
Q ss_pred EEEEcccccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEEec
Q 021550 112 VLESGTGSGSLTTSLARAVAPT-GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIFLD 188 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~~d 188 (311)
++|+|||+|..+ .++... +. ..++++|+++.++..++......+... +.+...|... ..+... ..+|++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS--ASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC--CceeEEeee
Confidence 999999999987 444442 22 388899999999888555433211111 5677777653 333320 268988432
Q ss_pred CC----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 189 LP----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. .....+..+.+.++|+|.+++...
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22 136789999999999999887544
No 302
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.43 E-value=0.0014 Score=58.39 Aligned_cols=80 Identities=20% Similarity=0.151 Sum_probs=48.8
Q ss_pred CCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCc--CCCCccE
Q 021550 109 GCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDE--FSGLADS 184 (311)
Q Consensus 109 g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~--~~~~~D~ 184 (311)
.-++||||+|.-. ..+..++.. +-+++|.|+++..++.|++++..+ ++.++|+++...-....+... ..+.||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 3479999999854 344444443 579999999999999999999999 898889998764332222211 1257999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
.++++|
T Consensus 181 tmCNPP 186 (299)
T PF05971_consen 181 TMCNPP 186 (299)
T ss_dssp EEE---
T ss_pred EecCCc
Confidence 999887
No 303
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=97.41 E-value=0.00053 Score=63.01 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=66.5
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
....+.++++||..|+|. |..+.++++.++ ...+++++.+++..+.+.+ .|....+.....+... .+... ..
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~~ 241 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVE-KIKELTGG 241 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHH-HHHHHhCC
Confidence 566788999999888876 778888888874 4568889988887766553 3442211111111110 01100 01
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..... ..+..+.+.|+++|.++.++.
T Consensus 242 ~~vdvvld~~g~~-~~~~~~~~~l~~~G~~v~~g~ 275 (350)
T cd08256 242 YGCDIYIEATGHP-SAVEQGLNMIRKLGRFVEFSV 275 (350)
T ss_pred CCCCEEEECCCCh-HHHHHHHHHhhcCCEEEEEcc
Confidence 3589877544432 367888999999999998753
No 304
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.37 E-value=0.001 Score=59.95 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=70.8
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe--
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL-- 187 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~-- 187 (311)
...+|+|.|.|..+..++..+ .+|-+++++...+..++.++. .| |+.+.+|.... .|. -|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~-----~daI~mkW 244 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK-----GDAIWMKW 244 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC-----cCeEEEEe
Confidence 789999999999999999864 458889998888877777654 44 66778888754 554 468874
Q ss_pred ---cCCCh--hhHHHHHHhcccCCcEEEEec
Q 021550 188 ---DLPQP--WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 188 ---d~~~~--~~~l~~~~~~LkpgG~lv~~~ 213 (311)
|++|. ..+|.++++.|+|||.+++..
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 55544 378999999999999999853
No 305
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.35 E-value=0.00017 Score=63.03 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCCCEEEEEcccccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC---------------------------
Q 021550 107 VPGCLVLESGTGSGSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--------------------------- 158 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--------------------------- 158 (311)
..|.++||+|||+-..- +.+++. ...|+..|+.+...+..++.++..+.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~---f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEW---FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGT---EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHh---hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 45789999999984432 222222 36899999999988877776544211
Q ss_pred -CCcEEEEEecCCC-CCCCC--cCCCCccEEEec---------CCChhhHHHHHHhcccCCcEEEEe
Q 021550 159 -SSFVTVGVRDIQG-QGFPD--EFSGLADSIFLD---------LPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 159 -~~~v~~~~~D~~~-~~~~~--~~~~~~D~V~~d---------~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...-.++..|+.. .++.. ..+..||+|+.. ......++.++.++|||||.|++.
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0112367788875 22332 122359998742 223346899999999999999874
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.34 E-value=0.0026 Score=61.16 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-cEEEEEecCCCC----CCCCc-
Q 021550 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS-FVTVGVRDIQGQ----GFPDE- 177 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~-~v~~~~~D~~~~----~~~~~- 177 (311)
+..++++|+.+|+|. |..++..++.+| +.|+++|.+++.++.+++ .|... .++....+.... .+.+.
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeEEEeccccccccccchhhhcchhH
Confidence 356899999999998 889999999974 489999999999998886 34321 011111110000 00000
Q ss_pred --------C--CCCccEEEecCC-----ChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 --------F--SGLADSIFLDLP-----QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 --------~--~~~~D~V~~d~~-----~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
. ...+|+||-... .|..+.+++.+.+||||.++.+..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 035899986443 233335999999999999987643
No 307
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.34 E-value=0.002 Score=56.73 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=68.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcC------------------------------
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTG------------------------------ 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g------------------------------ 157 (311)
...+||.-|||-|.++..+|.+ +..+.+.|.|--|+-..+-.+....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3568999999999999999998 5799999999888654443222100
Q ss_pred ---------CCCcEEEEEecCCCCCCCCcCCCCccEEE----ecCC-ChhhHHHHHHhcccCCcEEEEecC
Q 021550 158 ---------VSSFVTVGVRDIQGQGFPDEFSGLADSIF----LDLP-QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 158 ---------~~~~v~~~~~D~~~~~~~~~~~~~~D~V~----~d~~-~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...++....+|+.+...++...+.||+|+ +|.. +-.++|+.+.++|||||..+=++|
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GP 203 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGP 203 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCC
Confidence 01123344444443111111125899886 4543 356789999999999998887666
No 308
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=97.34 E-value=0.0046 Score=55.89 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=67.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
++...++.++.+||..|+|. |..+..+++.+ +.++++++.+++..+.+++ .|....+ +... ....
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~~-----~~~~-~~~~-- 212 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALT--GPDVVLVGRHSEKLALARR----LGVETVL-----PDEA-ESEG-- 212 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEe-----Cccc-cccC--
Confidence 34566788999999998876 77777888886 3569999999988887775 3443211 1111 1122
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ....+..+.+.|+++|.++.+.
T Consensus 213 -~~~d~vid~~g-~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 213 -GGFDVVVEATG-SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -CCCCEEEECCC-ChHHHHHHHHHhhcCCEEEEEc
Confidence 56999764433 3346788889999999998754
No 309
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.28 E-value=0.0034 Score=57.40 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=66.4
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~ 179 (311)
...++.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .|.+..+.....+... .+.. ...
T Consensus 162 ~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~-~i~~~~~~ 235 (345)
T cd08287 162 VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLG-AERIIAMSRHEDRQALARE----FGATDIVAERGEEAVA-RVRELTGG 235 (345)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCceEecCCcccHHH-HHHHhcCC
Confidence 356778899999988876 778888888863 3468999988876666553 3442212211111110 0100 011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-... ....+..+.+.|+++|.++.++.
T Consensus 236 ~~~d~il~~~g-~~~~~~~~~~~l~~~g~~v~~g~ 269 (345)
T cd08287 236 VGADAVLECVG-TQESMEQAIAIARPGGRVGYVGV 269 (345)
T ss_pred CCCCEEEECCC-CHHHHHHHHHhhccCCEEEEecc
Confidence 46898764333 33478899999999999987754
No 310
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=97.23 E-value=0.0026 Score=58.18 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=67.6
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+|. |..+..+++.. +.+|++++.+++..+.+++ .|.+..+.... .+... .+.....
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~-~~~~~~~ 231 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAA-AVRDLTG 231 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHH-HHHHHhC
Confidence 456678899999999875 77778888886 4689999988888777743 35433222221 12111 0110011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 232 ~~~d~vi~~~g~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 232 GGAHVSVDALGI-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred CCCCEEEEcCCC-HHHHHHHHHHhhcCCEEEEeCC
Confidence 368987754432 3467888999999999987653
No 311
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=97.19 E-value=0.0046 Score=56.46 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=65.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
+......++.+||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .|... +.....+.. ..+... .
T Consensus 160 ~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~-~~l~~~~~ 232 (344)
T cd08284 160 AKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLG-AARVFAVDPVPERLERAAA----LGAEP-INFEDAEPV-ERVREATE 232 (344)
T ss_pred hHhcCCccCCEEEEECCcHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----hCCeE-EecCCcCHH-HHHHHHhC
Confidence 3446678899999998775 667777888753 2478888888777666554 34311 111111111 001000 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
...+|+++-.... ...+..+.+.|+++|.++.+...
T Consensus 233 ~~~~dvvid~~~~-~~~~~~~~~~l~~~g~~v~~g~~ 268 (344)
T cd08284 233 GRGADVVLEAVGG-AAALDLAFDLVRPGGVISSVGVH 268 (344)
T ss_pred CCCCCEEEECCCC-HHHHHHHHHhcccCCEEEEECcC
Confidence 1468987654433 34788899999999999987643
No 312
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=97.16 E-value=0.003 Score=58.39 Aligned_cols=106 Identities=21% Similarity=0.191 Sum_probs=66.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCc
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~ 177 (311)
.....+.++.+||..|+|. |..+..+++..+ ...|++++.+++..+.+++ .+....+.....+.... .+..
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~~- 248 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLTD- 248 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHcC-
Confidence 3456778999999998865 777788888863 3358899888887776643 34322111111111100 1111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ....+..+.+.|+++|+++.++.
T Consensus 249 -~~~vd~vld~~~-~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 249 -GRGADYAFEAVG-RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred -CCCCCEEEEcCC-ChHHHHHHHHHhhcCCeEEEEec
Confidence 146898664333 23477889999999999988753
No 313
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.14 E-value=0.0026 Score=58.18 Aligned_cols=104 Identities=23% Similarity=0.219 Sum_probs=67.7
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC---CC---CC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI---QG---QG 173 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~---~~---~~ 173 (311)
+....+.++.+||..|+|. |..+..+++.++ ...|++++.+++..+.+++ .+.+..+.....+. .. ..
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~ 229 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAEL 229 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHH
Confidence 4667889999999988876 778888888863 2338888888887776654 24332122211111 00 11
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
... ..+|+|+-.... ...+..+.+.|+++|.++.++
T Consensus 230 ~~~---~~~d~vld~~g~-~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGG---KGPDVVIECTGA-ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCC---CCCCEEEECCCC-HHHHHHHHHHhhcCCEEEEEc
Confidence 121 459997754443 237888999999999999775
No 314
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.13 E-value=0.0016 Score=55.05 Aligned_cols=116 Identities=24% Similarity=0.221 Sum_probs=76.8
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD- 188 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d- 188 (311)
-++|||||-+........ +--.|+.+|+++.- -.+.+.|+.+.+++....+.||+|.+.
T Consensus 53 lrlLEVGals~~N~~s~~----~~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS----GWFDVTRIDLNSQH----------------PGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCccccc----CceeeEEeecCCCC----------------CCceeeccccCCCCCCcccceeEEEEEE
Confidence 589999998766543322 23469999997621 335678888766764444789998653
Q ss_pred ----CCCh---hhHHHHHHhcccCCcE-----EEEecCCH--H-----HHHHHHHHHhh-cCceeeEEEeeceeeEE
Q 021550 189 ----LPQP---WLAIPSAKKMLKQDGI-----LCSFSPCI--E-----QVQRSCESLRL-NFTDIRTFEILLRTYEI 245 (311)
Q Consensus 189 ----~~~~---~~~l~~~~~~LkpgG~-----lv~~~~~~--~-----~~~~~~~~l~~-~f~~~~~~e~~~r~~~v 245 (311)
.|++ ++.+..+.++|+|+|. ++++.|.. + ....+...|.. ||..++.-+.-.=.|-+
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l 189 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWL 189 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEE
Confidence 4554 4789999999999999 87776632 1 23344555555 88877765554333333
No 315
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=97.11 E-value=0.0064 Score=55.43 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=65.1
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
..+...++.+||..|+|. |..+..+++.++ ..++++++.+++..+.+++ .+.+..+.....+.. .+.. ..+
T Consensus 159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~~vi~~~~~~~~--~~~~-~~~ 230 (339)
T cd08232 159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGADETVNLARDPLA--AYAA-DKG 230 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCCEEEcCCchhhh--hhhc-cCC
Confidence 334434899999988876 778888888863 2378999998887776554 243221111111111 1111 014
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ...++.+.+.|+++|.++.+..
T Consensus 231 ~vd~vld~~g~-~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 231 DFDVVFEASGA-PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred CccEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 58997754432 3368889999999999998753
No 316
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=97.10 E-value=0.0062 Score=55.49 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=68.4
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
+....+.++.+||..|+|. |..+..+++.+ +.+|+++..+++..+.+++ .+.+..+.....+... .....
T Consensus 152 ~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 152 VRRAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDG 225 (337)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCC
Confidence 3566788999999998875 77888889886 4789999888887776643 2332212222212111 01121
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 226 ---~~vd~vld~~g~-~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 226 ---EGADVVIDATGN-PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ---CCCCEEEECCCC-HHHHHHHHHHHhcCCEEEEEcC
Confidence 458997754432 3467888999999999987753
No 317
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.09 E-value=0.0044 Score=54.26 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=77.9
Q ss_pred CEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCC--C---c--C
Q 021550 110 CLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFP--D---E--F 178 (311)
Q Consensus 110 ~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~--~---~--~ 178 (311)
...||+|||- -..+..+++...|+++|+-+|.+|-.+..++..+....- ....++.+|+.+. .+. + . .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 4799999994 457888999999999999999999999999988765432 2378999999751 111 0 0 0
Q ss_pred CCCccEEEe-------cCCChhhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh-----cCceeeEEEeecee
Q 021550 179 SGLADSIFL-------DLPQPWLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL-----NFTDIRTFEILLRT 242 (311)
Q Consensus 179 ~~~~D~V~~-------d~~~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~-----~f~~~~~~e~~~r~ 242 (311)
...+=++++ |..++..++..+.+.|.||.+|++...+. +....+...+.+ .++..+.++.+...
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g 228 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDG 228 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCC
Confidence 022223322 33467889999999999999999864433 233444444443 14444444445555
Q ss_pred eEEee
Q 021550 243 YEIRQ 247 (311)
Q Consensus 243 ~~v~~ 247 (311)
|++..
T Consensus 229 ~elve 233 (267)
T PF04672_consen 229 LELVE 233 (267)
T ss_dssp SEE-T
T ss_pred CccCC
Confidence 55543
No 318
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00076 Score=63.12 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCCCCccE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~~~~D~ 184 (311)
..++-+|||.=+++|.-++..+..+.+-..|++.|.++..++..++|++.++..+.++..+.|+...-+.. .....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 45677999999999999999999997778999999999999999999999988888888888886421111 01157999
Q ss_pred EEecCC-ChhhHHHHHHhcccCCcEEEEe
Q 021550 185 IFLDLP-QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 185 V~~d~~-~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|=+|+- .+..+|+.+.+.++.||.+++-
T Consensus 187 IDLDPyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 187 IDLDPYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred EecCCCCCccHHHHHHHHHhhcCCEEEEE
Confidence 988864 5667999999999999999984
No 319
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=97.06 E-value=0.002 Score=58.38 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=91.0
Q ss_pred CCCCCCEEEEEEcCCcEEEEEecCCCeeecccceeeCcccccCCCCceEEccCCcEE-EEecCCHHHHhhhhcCCce---
Q 021550 15 CIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKGGFV-YLLAPTPELWTLVLSHRTQ--- 90 (311)
Q Consensus 15 ~i~~GD~V~l~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~iG~~~G~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~--- 90 (311)
.+++||+|+... .+.|+.|.+|+.|...+++-. ..+|.. ..+.+- |+..|... ...++....
T Consensus 75 ~~~~Gd~V~~~~--------~~~~~~c~~~~~~~~~~~~~~-~~~~~~---~~g~~~~~~~v~~~~--~~~~p~~~~~~~ 140 (325)
T cd08264 75 GVKKGDRVVVYN--------RVFDGTCDMCLSGNEMLCRNG-GIIGVV---SNGGYAEYIVVPEKN--LFKIPDSISDEL 140 (325)
T ss_pred CCCCCCEEEECC--------CcCCCCChhhcCCCccccCcc-ceeecc---CCCceeeEEEcCHHH--ceeCCCCCCHHH
Confidence 368899998765 345788888888877666531 111110 112221 33333221 111121110
Q ss_pred ---eeec-ccHHHHHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEE
Q 021550 91 ---ILYI-ADISFVIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTV 164 (311)
Q Consensus 91 ---~~~~-~~~~~i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~ 164 (311)
.... ......+..+++.++.+||..|+ |. |..+..+++..+ .+++++..+ +.+ ...|....+..
T Consensus 141 ~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~~----~~~----~~~g~~~~~~~ 210 (325)
T cd08264 141 AASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSRK----DWL----KEFGADEVVDY 210 (325)
T ss_pred hhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeHH----HHH----HHhCCCeeecc
Confidence 0000 01112334477889999999997 55 888888888863 567777521 222 23343221111
Q ss_pred EEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 165 GVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 165 ~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.. ..+.... +.+|+|+-.... ..+..+.+.|+++|.++.+..
T Consensus 211 --~~~~-~~l~~~~-~~~d~vl~~~g~--~~~~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 211 --DEVE-EKVKEIT-KMADVVINSLGS--SFWDLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred --hHHH-HHHHHHh-CCCCEEEECCCH--HHHHHHHHhhccCCEEEEEec
Confidence 1110 1111111 358997754433 478999999999999997653
No 320
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=97.04 E-value=0.005 Score=56.49 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..++++||..|+|+ |..+..+++..+ ..+|+.++.+++..+.+++ .|....+.....+.. ..+.....+.+|+
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~~d~ 246 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAA-KRIIKAAGGGVDA 246 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHH-HHHHHHhCCCCcE
Confidence 44789999998876 778888888863 3478899988888777753 343211111110110 0011111136899
Q ss_pred EEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++-..+. ...+..+.+.|+++|.++.++.
T Consensus 247 vid~~g~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 247 VIDFVNN-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEECCCC-HHHHHHHHHHhhcCCeEEEECC
Confidence 7744433 3478899999999999997643
No 321
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=97.04 E-value=0.0084 Score=55.71 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+....+.+|++||..|+|. |..+..+++..+ ..++++++.+++..+.+++ .|. ..+.....+... .+.....
T Consensus 169 ~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~-~i~~~~~ 241 (375)
T cd08282 169 LELAGVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGDPVE-QILGLEP 241 (375)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCcccHHH-HHHHhhC
Confidence 3556778999999998886 778888888863 3478889999888777664 342 111111111110 0111111
Q ss_pred CCccEEEecCCCh----------hhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQP----------WLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~----------~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|+++-..... ...+..+.+.|+++|.++.+.
T Consensus 242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence 3589877543322 235888999999999997654
No 322
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=97.01 E-value=0.0049 Score=55.73 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=63.9
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
....+.++.+||..|.+. |..+..++... +.+++.++.+++..+.++. .+....+.....+... .....
T Consensus 160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 233 (342)
T cd08266 160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELTGK 233 (342)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHhCC
Confidence 456678899999999864 66666677764 4678999988887766643 2332111111111100 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++..... ..+..+.+.|+++|.++.++.
T Consensus 234 ---~~~d~~i~~~g~--~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 234 ---RGVDVVVEHVGA--ATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred ---CCCcEEEECCcH--HHHHHHHHHhhcCCEEEEEec
Confidence 468998865554 357888899999999987653
No 323
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0035 Score=56.93 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
..+|||.=+|+|.=++..+...+ ..+|+.-|+||++.+.+++|+..+...+ ......|+...-... ...||+|=+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~--~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL--HRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc--CCCccEEecC
Confidence 68999999999999999988864 3489999999999999999999884444 555567775322221 1679998777
Q ss_pred CC-ChhhHHHHHHhcccCCcEEEEe
Q 021550 189 LP-QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 189 ~~-~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
+- .|..+++.+.+.++.+|.+.+-
T Consensus 129 PFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 PFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCCCchHHHHHHHHhhcCCEEEEE
Confidence 63 5667999999999999999873
No 324
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.97 E-value=0.0042 Score=56.40 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=69.4
Q ss_pred HHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
....++.+|++||..|. |. |..+.++++.. +.+|++++.+++..+.+++ .|.+..+..... +.. ..+...
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~-~~~~~~ 203 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLE-ETLKKA 203 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHH-HHHHHh
Confidence 35677899999999994 43 88889999986 3689999999888777753 455332222111 111 001111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+.+|+|+-.... ..+..+.+.|+++|+++.++.
T Consensus 204 ~~~gvdvv~d~~G~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 204 SPDGYDCYFDNVGG--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCCeEEEEECCCH--HHHHHHHHHhCcCcEEEEecc
Confidence 11469997744443 256889999999999998764
No 325
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=96.97 E-value=0.0034 Score=57.76 Aligned_cols=105 Identities=17% Similarity=0.115 Sum_probs=69.7
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
....+.+|++||..|+ |. |.++.++++.. +.+|++++.+++..+.+++. .|.+..+..... +... .+....
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~ 225 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDA-ALKRYF 225 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHH-HHHHHC
Confidence 4467899999999998 54 88999999986 36899999998887766532 354432222111 2211 111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+|+-.... ..+..+.+.|+++|+++++..
T Consensus 226 ~~gvD~v~d~vG~--~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 226 PEGIDIYFDNVGG--DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHhccCCEEEEECc
Confidence 1468987744443 478899999999999998754
No 326
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.95 E-value=0.00039 Score=61.03 Aligned_cols=127 Identities=22% Similarity=0.268 Sum_probs=88.7
Q ss_pred CCcEEEEecCCHHHHhhhhcCCceeeecccHHHHHHhcCC-CCCCEEEEEcccccHHHH-HHHHHhCCCcEEEEEeCCHH
Q 021550 67 KGGFVYLLAPTPELWTLVLSHRTQILYIADISFVIMYLEL-VPGCLVLESGTGSGSLTT-SLARAVAPTGHVYTFDFHEQ 144 (311)
Q Consensus 67 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~g~~VLdiG~G~G~~~~-~la~~~~~~~~v~~vD~~~~ 144 (311)
++|..|...|+.-++... .+.-..+.++. ..+..|+|+-+|-|++++ .+..+ ++..|+++|.+|.
T Consensus 163 ~NGI~~~~d~t~~MFS~G-----------N~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~ 229 (351)
T KOG1227|consen 163 QNGITQIWDPTKTMFSRG-----------NIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPW 229 (351)
T ss_pred hcCeEEEechhhhhhhcC-----------cHHHHHHhhhcccccchhhhhhcccceEEeehhhcc--CccEEEEEecCHH
Confidence 456777777776543211 11112222332 245789999999999999 55554 5789999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec-CCChhhHHHHHHhcccCCcE-EE
Q 021550 145 RAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD-LPQPWLAIPSAKKMLKQDGI-LC 210 (311)
Q Consensus 145 ~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d-~~~~~~~l~~~~~~LkpgG~-lv 210 (311)
.++..++++..+++.++..++.+|-+. .-+. ...|.|.+. .|...+-...+.++|+|.|- ++
T Consensus 230 svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~---~~AdrVnLGLlPSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 230 SVEALRRNAEANNVMDRCRITEGDNRN-PKPR---LRADRVNLGLLPSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred HHHHHHHHHHhcchHHHHHhhhccccc-cCcc---ccchheeeccccccccchHHHHHHhhhcCCcEE
Confidence 999999999998887777777888774 2333 678988875 46666667778888987544 44
No 327
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=0.0029 Score=57.56 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=79.2
Q ss_pred CceeeecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe
Q 021550 88 RTQILYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR 167 (311)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 167 (311)
+.-+++.+........++..+|.+|+|.+|.+|.-|.+++..+.+.++++++|.+.++.+..++.+...|... ++...+
T Consensus 193 g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~ 271 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEG 271 (413)
T ss_pred CceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccc
Confidence 3345555555568889999999999999999999999999999888999999999999999999999889876 677788
Q ss_pred cCCCCCCCCcCCCCccEEEecCC
Q 021550 168 DIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 168 D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
|+.....++.. ..+-.+++|++
T Consensus 272 df~~t~~~~~~-~~v~~iL~Dps 293 (413)
T KOG2360|consen 272 DFLNTATPEKF-RDVTYILVDPS 293 (413)
T ss_pred cccCCCCcccc-cceeEEEeCCC
Confidence 88753222211 33555666654
No 328
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=96.93 E-value=0.0066 Score=55.49 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~ 180 (311)
....++.+||..|+|. |..+..+++..+ ...|++++.+++..+.+++ .+....+.....++.+. .+.. ..
T Consensus 157 ~~~~~g~~vlI~~~g~vg~~a~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~--~~ 229 (340)
T TIGR00692 157 AGPISGKSVLVTGAGPIGLMAIAVAKASG-AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTD--GE 229 (340)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcC--CC
Confidence 3457889998887764 677777888763 2248888888877776654 34322122211221110 1111 14
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.+|+++-.... ...+..+.+.|+++|.++.++..
T Consensus 230 ~~d~vld~~g~-~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 230 GVDVFLEMSGA-PKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred CCCEEEECCCC-HHHHHHHHHhhcCCCEEEEEccC
Confidence 68997754332 34688889999999999987653
No 329
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=96.93 E-value=0.007 Score=55.11 Aligned_cols=105 Identities=20% Similarity=0.295 Sum_probs=68.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDEF 178 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~ 178 (311)
+....+.++.+||..|+|+ |..+..+++... +.++++++.+++..+.+++ .|.+..+.... .+.. ..+....
T Consensus 155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~v~~~~ 228 (338)
T PRK09422 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVA-KIIQEKT 228 (338)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHH-HHHHHhc
Confidence 3567789999999999765 777778888631 4689999999998888753 35432111111 1100 1111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|.++.+.... ..+..+.+.|+++|.++.++
T Consensus 229 -~~~d~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 229 -GGAHAAVVTAVAK-AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred -CCCcEEEEeCCCH-HHHHHHHHhccCCCEEEEEe
Confidence 2478666665443 46899999999999999775
No 330
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=96.92 E-value=0.0072 Score=55.06 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCC
Q 021550 105 ELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGL 181 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~ 181 (311)
.+.++.+||..|+|+ |..+..+++..+ ..+|++++.+++..+.+++ .|.+..+... .+... ..+.. ...
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~i~~~~~--~~~ 235 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGADHVLNAS-DDVVEEVRELTG--GRG 235 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCcEEEcCC-ccHHHHHHHHhC--CCC
Confidence 467889999999776 667777888763 2688999888887766543 3442211111 11100 00111 136
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 236 ~dvvld~~g~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 236 ADAVIDFVGS-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred CCEEEEcCCC-HHHHHHHHHHhhcCCEEEEEcC
Confidence 8997755443 3468888999999999998753
No 331
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.90 E-value=0.0063 Score=52.35 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHhcCCCCCC--EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---hcCC-----CCcEEEEEec
Q 021550 99 FVIMYLELVPGC--LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE---RTGV-----SSFVTVGVRD 168 (311)
Q Consensus 99 ~i~~~~~~~~g~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~g~-----~~~v~~~~~D 168 (311)
.++..++++++. +|||.-+|-|.-+..++.. +++|+++|.||-.....+.-+. .... ..+++++++|
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 477888888875 8999999999999988864 4799999999987665554332 2111 1369999999
Q ss_pred CCCCCCCCcCCCCccEEEecC
Q 021550 169 IQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~ 189 (311)
..+ .+. ....+||+|++|+
T Consensus 141 ~~~-~L~-~~~~s~DVVY~DP 159 (234)
T PF04445_consen 141 ALE-YLR-QPDNSFDVVYFDP 159 (234)
T ss_dssp CCC-HCC-CHSS--SEEEE--
T ss_pred HHH-HHh-hcCCCCCEEEECC
Confidence 875 222 1127899999986
No 332
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=96.87 E-value=0.0097 Score=55.04 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=65.8
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
....+.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+.....+... .....
T Consensus 181 ~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~- 254 (367)
T cd08263 181 HAADVRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREITGG- 254 (367)
T ss_pred hcccCCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHhCC-
Confidence 334567899999888765 777788888763 3348889888887776643 3432211111111110 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-..+.. ..+..+.+.|+++|.++.++.
T Consensus 255 --~~~d~vld~vg~~-~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 255 --RGVDVVVEALGKP-ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred --CCCCEEEEeCCCH-HHHHHHHHHHhcCCEEEEEcc
Confidence 4699987554443 367889999999999998754
No 333
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.0011 Score=53.12 Aligned_cols=129 Identities=22% Similarity=0.202 Sum_probs=82.9
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC--cEEEEEecCCC-CCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSS--FVTVGVRDIQG-QGFP 175 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~--~v~~~~~D~~~-~~~~ 175 (311)
++..-+...|.+|||+|.|- |..++.+|... +...|...|-+++.++..++....+.... ...+..-+... ....
T Consensus 21 ~l~~~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 21 ILRDPNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHhchhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 55555566788999999996 66666666664 67899999999999988887655442211 01111111110 0011
Q ss_pred CcCCCCccEEEe-cCC----ChhhHHHHHHhcccCCcEEEEecCCH-HHHHHHHHHHhh-cCc
Q 021550 176 DEFSGLADSIFL-DLP----QPWLAIPSAKKMLKQDGILCSFSPCI-EQVQRSCESLRL-NFT 231 (311)
Q Consensus 176 ~~~~~~~D~V~~-d~~----~~~~~l~~~~~~LkpgG~lv~~~~~~-~~~~~~~~~l~~-~f~ 231 (311)
+ ...||.|+. |.- .....+..+...|+|.|.-++++|-. +.++.++..... +|.
T Consensus 100 e--q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 100 E--QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred h--hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeE
Confidence 1 147999874 221 23457788899999999999999965 446666666655 543
No 334
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=96.79 E-value=0.012 Score=55.06 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=64.1
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-----------
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ----------- 170 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~----------- 170 (311)
..+.++++||..|+ |+ |..+..+++.. +.+++.++.+++..+.+++ .|....+.....+..
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~~s~~~~~~~~~----~G~~~~i~~~~~~~~~~~~~~~~~~~ 262 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAA--GANPVAVVSSEEKAEYCRA----LGAEGVINRRDFDHWGVLPDVNSEAY 262 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccccccccccccchhh
Confidence 46788999999997 54 77888888886 4677888888888887764 343211111000000
Q ss_pred -----C-----CCCCCcCC-C-CccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 171 -----G-----QGFPDEFS-G-LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 171 -----~-----~~~~~~~~-~-~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ..+.+... . .+|+|+ |.... ..+..+.+.|+++|.++.++
T Consensus 263 ~~~~~~~~~~~~~v~~l~~~~~g~d~vi-d~~g~-~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 263 TAWTKEARRFGKAIWDILGGREDPDIVF-EHPGR-ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred hhhhhccchHHHHHHHHhCCCCCCeEEE-ECCch-HhHHHHHHHhccCCEEEEEc
Confidence 0 00000011 2 589876 44333 46788999999999999875
No 335
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=96.78 E-value=0.013 Score=53.31 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=65.5
Q ss_pred HhcCCCCCCEEEEEccc-c-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG-S-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G-~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
..+.+.++.+||..|++ . |..+..+++.. +.+++.++.+++..+.+++. ...- +... +.. ..+...
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~-~~~~----~~~~--~~~-~~v~~~-- 223 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTSSESKAKIVSKY-ADYV----IVGS--KFS-EEVKKI-- 223 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHH-HHHh----cCch--hHH-HHHHhc--
Confidence 34578889999999993 3 88888899886 47899999988888877553 2111 1111 111 111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|.++.+..
T Consensus 224 ~~~d~~ld~~g~~--~~~~~~~~l~~~G~~v~~g~ 256 (334)
T PRK13771 224 GGADIVIETVGTP--TLEESLRSLNMGGKIIQIGN 256 (334)
T ss_pred CCCcEEEEcCChH--HHHHHHHHHhcCCEEEEEec
Confidence 2478877544432 57888999999999998754
No 336
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.75 E-value=0.017 Score=52.44 Aligned_cols=101 Identities=24% Similarity=0.216 Sum_probs=66.2
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
....+.++.+||..|+|. |..+..+++.. +.+|+.++.+++..+.+++ .+....+.....+.. .. .. +
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~-~~---~ 224 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGADEVVDSGAELDE-QA-AA---G 224 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCcEEeccCCcchH-Hh-cc---C
Confidence 446788899999999885 77778888886 3689999999888777643 233221111111111 01 11 4
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 225 ~~d~vi~~~~~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 225 GADVILVTVVS-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred CCCEEEECCCc-HHHHHHHHHhcccCCEEEEECC
Confidence 68987754333 3467888999999999997753
No 337
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.0047 Score=52.38 Aligned_cols=107 Identities=18% Similarity=0.110 Sum_probs=69.9
Q ss_pred CEEEEEcccccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC
Q 021550 110 CLVLESGTGSGSLTTSLARAVAP----T----GHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD 176 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~ 176 (311)
.+|+|+++.+|.++..|++.+.. . .+|+++|+.+- ..+.. |.-+++|+.... +..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHHH
Confidence 58999999999999999988743 1 23999999652 23444 777888987521 111
Q ss_pred cCCCCccEEEecCC-Ch---------------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 177 EFSGLADSIFLDLP-QP---------------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 177 ~~~~~~D~V~~d~~-~~---------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
..+++.|+|++|.. +- ..+|.-...+|+|||.||.-..-......+...|+.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 12258999998753 11 135666778999999998633222333344444444
No 338
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0013 Score=57.50 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..|..++|+|||.|-.+.. .|...+++.|++...+..+++. |. .....+|+...++.+ .+||.++
T Consensus 44 ~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l~~p~~~---~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADALKLPFRE---ESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC----CC---ceeehhhhhcCCCCC---Cccccch
Confidence 4488999999999976532 2567899999998888777641 21 256778888777777 7899876
Q ss_pred e-----cCC---ChhhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 187 L-----DLP---QPWLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 187 ~-----d~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
. ++. ....+++++.+.|+|||...+|+-..++
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 3 222 2346899999999999998888765544
No 339
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=96.70 E-value=0.0046 Score=58.27 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=67.5
Q ss_pred hcCCCCCCEEEEEc-ccc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhc----CCCCcEEEEEe----cCCC
Q 021550 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERT----GVSSFVTVGVR----DIQG 171 (311)
Q Consensus 103 ~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~----g~~~~v~~~~~----D~~~ 171 (311)
..++++|++||.+| +|+ |.++.++++..+ +..+|+++|.+++.++.+++..... |.. ..++.. +...
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHA 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHH
Confidence 45678999999997 565 888888888863 2348999999999999888742111 211 111111 1110
Q ss_pred CCCCCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 172 QGFPDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 172 ~~~~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+.+. ....+|+||.....+ ..+..+.+.++++|.++++
T Consensus 248 -~v~~~t~g~g~D~vid~~g~~-~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 -TLMELTGGQGFDDVFVFVPVP-ELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred -HHHHHhCCCCCCEEEEcCCCH-HHHHHHHHHhccCCeEEEE
Confidence 01000 114699987655443 4788899999988877654
No 340
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=96.70 E-value=0.019 Score=52.35 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC------CC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG------QG 173 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~------~~ 173 (311)
+....+.++++||..|+|. |..+..+++.++ ...+++++.+++..+.+++ .+....+.....+... ..
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~ 228 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARG-VGPIVASDFSPERRALALA----MGADIVVDPAADSPFAAWAAELAR 228 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcEEEcCCCcCHHHHHHHHHHH
Confidence 3556788999999998765 677778888864 3458888988888877764 3432111111111100 00
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
... +.+|+++-.... ...+..+.+.|+++|.++.+..
T Consensus 229 ~~~---~~~d~vid~~g~-~~~~~~~~~~l~~~g~~v~~g~ 265 (341)
T cd08262 229 AGG---PKPAVIFECVGA-PGLIQQIIEGAPPGGRIVVVGV 265 (341)
T ss_pred hCC---CCCCEEEECCCC-HHHHHHHHHHhccCCEEEEECC
Confidence 111 469987743333 2367888999999999998754
No 341
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.70 E-value=0.016 Score=58.11 Aligned_cols=118 Identities=21% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHH-----------HHHHh-----cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV------AP-----TGHVYTFDFHE---QRAASAR-----------EDFER-----TG 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~------~~-----~~~v~~vD~~~---~~~~~a~-----------~~~~~-----~g 157 (311)
+.-+|+|+|-|+|...+...+.+ .+ .-+++++|..| +-+..+. +.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999877776555 12 24788999644 2222221 21111 12
Q ss_pred C------CC--cEEEEEecCCCCCCCCcCCCCccEEEecCCCh------h--hHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 158 V------SS--FVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP------W--LAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 158 ~------~~--~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~------~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
+ .+ ++++..+|+.+ .++.. ...+|++|+|.-.| | +++..+.+.++|||.++.|+. ...
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-~~~~~-~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~----a~~ 210 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-LLPQL-DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS----AGF 210 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-HHHhc-cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh----HHH
Confidence 1 11 34566678763 23321 14699999996544 3 689999999999999998864 344
Q ss_pred HHHHHhh-cCc
Q 021550 222 SCESLRL-NFT 231 (311)
Q Consensus 222 ~~~~l~~-~f~ 231 (311)
+...|.. +|.
T Consensus 211 vr~~l~~~GF~ 221 (662)
T PRK01747 211 VRRGLQEAGFT 221 (662)
T ss_pred HHHHHHHcCCe
Confidence 4555555 563
No 342
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.69 E-value=0.0079 Score=54.35 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.++++||.+|+|+ |.++.++++.++ ...|+++|.+++.++.|... .. + |.... .. ..+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~~---i-----~~~~~--~~---~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----EV---L-----DPEKD--PR---RDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----cc---c-----Chhhc--cC---CCCCEE
Confidence 4678999999987 889899998863 44577889988887766531 11 1 11111 11 468987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|-.... ...+..+.+.|+++|.++++..
T Consensus 205 id~~G~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 205 YDASGD-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred EECCCC-HHHHHHHHHhhhcCcEEEEEee
Confidence 754443 3468899999999999998764
No 343
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.69 E-value=0.027 Score=51.00 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=66.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+.+.++.+||..|+|. |..+..+++.. +.+|+.++.+++..+.+++ .|... +. +... ...
T Consensus 160 ~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~---~~--~~~~--~~~--- 223 (329)
T cd08298 160 LKLAGLKPGQRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARE----LGADW---AG--DSDD--LPP--- 223 (329)
T ss_pred HHhhCCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHH----hCCcE---Ee--ccCc--cCC---
Confidence 3567788999999998876 66777788875 4789999888877766643 34321 11 1111 122
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++...+.. ..++.+.+.|+++|.++.+..
T Consensus 224 ~~vD~vi~~~~~~-~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 224 EPLDAAIIFAPVG-ALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcccEEEEcCCcH-HHHHHHHHHhhcCCEEEEEcC
Confidence 4689877543333 478999999999999998653
No 344
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.65 E-value=0.021 Score=52.22 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=64.0
Q ss_pred cCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCC
Q 021550 104 LELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSG 180 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~ 180 (311)
....++.+||..|+|. |..+..+++..+ ..+|++++-+++..+.+++ .+.+..+.....+... ..... +
T Consensus 159 ~~~~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~---~ 230 (341)
T cd05281 159 AGDVSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDG---T 230 (341)
T ss_pred hcCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCC---C
Confidence 3456889999988776 778888888863 2378888877777766654 3432211111111110 01111 4
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 231 ~vd~vld~~g~-~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 231 GVDVVLEMSGN-PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCEEEECCCC-HHHHHHHHHHhccCCEEEEEcc
Confidence 68997755443 3467888999999999998754
No 345
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.63 E-value=0.0084 Score=51.87 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+.+..+|+|+|||-=-++...... .++..++++|++..+++.....+...+.. .++...|... ..+. ...|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~-~~~~---~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLS-DPPK---EPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTT-SHTT---SEESEE
T ss_pred CCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeec-cCCC---CCcchh
Confidence 455789999999998888776644 35679999999999999999998888765 6777788874 3343 678988
Q ss_pred Ee
Q 021550 186 FL 187 (311)
Q Consensus 186 ~~ 187 (311)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 75
No 346
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0087 Score=47.27 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 98 SFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
..++.++.-.+..+.+|+|+|-|...++.++. +....+++|+++-.+..++-..-+.|+.....|...|+-+..+.+
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d- 138 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD- 138 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc-
Confidence 34667777778789999999999999888887 356789999999999999888778888777888877775433332
Q ss_pred CCCCccEEEecCCChh-hHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPW-LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~-~~l~~~~~~LkpgG~lv~ 211 (311)
-.+-+ |+..+... ..-.++..-+..+..++.
T Consensus 139 --y~~vv-iFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 139 --YRNVV-IFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred --cceEE-EeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 22222 33333222 233445556667776664
No 347
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=96.58 E-value=0.017 Score=50.86 Aligned_cols=142 Identities=12% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHHHhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCC
Q 021550 98 SFVIMYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 98 ~~i~~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~ 175 (311)
.++.+..++.+|+.|+-=|+-+ |...+++++++| -+-+.+=.+..-++.+++.+...|.+..+ ....+....+.
T Consensus 150 rmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~G--iktinvVRdR~~ieel~~~Lk~lGA~~Vi--Teeel~~~~~~ 225 (354)
T KOG0025|consen 150 RMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALG--IKTINVVRDRPNIEELKKQLKSLGATEVI--TEEELRDRKMK 225 (354)
T ss_pred HHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhC--cceEEEeecCccHHHHHHHHHHcCCceEe--cHHHhcchhhh
Confidence 3456778899999999988876 778999999973 45555555566678888888888876411 11111110000
Q ss_pred C--cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 176 D--EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 176 ~--~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
. ......-+.+-+.... .-.++++.|..||.++.|..-..|...+-..+- -|.++..--.|+.+|.-.
T Consensus 226 k~~~~~~~prLalNcVGGk--sa~~iar~L~~GgtmvTYGGMSkqPv~~~ts~l-IFKdl~~rGfWvt~W~~~ 295 (354)
T KOG0025|consen 226 KFKGDNPRPRLALNCVGGK--SATEIARYLERGGTMVTYGGMSKQPVTVPTSLL-IFKDLKLRGFWVTRWKKE 295 (354)
T ss_pred hhhccCCCceEEEeccCch--hHHHHHHHHhcCceEEEecCccCCCcccccchh-eeccceeeeeeeeehhhc
Confidence 0 0001233333333332 345788999999999999664433222211110 366666666666666544
No 348
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.57 E-value=0.071 Score=48.62 Aligned_cols=102 Identities=21% Similarity=0.266 Sum_probs=67.1
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+..+.+.++.+||..|+|. |..+..+++.. +.+++.++.+++..+.+++ .+.+..+.....+.. ... .
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~-~~~----~ 230 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALK----LGADEFIATKDPEAM-KKA----A 230 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEecCcchhhh-hhc----c
Confidence 3445678899999988876 77778888886 3589999998887777653 343321111111111 111 2
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-..+.. ..+..+.+.|+++|.++.++.
T Consensus 231 ~~~d~v~~~~g~~-~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 231 GSLDLIIDTVSAS-HDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCceEEEECCCCc-chHHHHHHHhcCCCEEEEEec
Confidence 5689988655443 357888999999999998754
No 349
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.56 E-value=0.0017 Score=50.48 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=60.5
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC-CCccEEEecCCChhhHH
Q 021550 118 GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS-GLADSIFLDLPQPWLAI 196 (311)
Q Consensus 118 G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~-~~~D~V~~d~~~~~~~l 196 (311)
|.|.++..+++..+ .+|+++|.++..++.+++ .|....+.....|+.+ .+.+... ..+|+||-.... ...+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~-~i~~~~~~~~~d~vid~~g~-~~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVE-QIRELTGGRGVDVVIDCVGS-GDTL 72 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHH-HHHHHTTTSSEEEEEESSSS-HHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccc-ccccccccccceEEEEecCc-HHHH
Confidence 45889999999974 999999999999888875 4533211111111110 1111111 479997755553 4589
Q ss_pred HHHHhcccCCcEEEEecCCH
Q 021550 197 PSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 197 ~~~~~~LkpgG~lv~~~~~~ 216 (311)
+.+.++|+++|.++++.-..
T Consensus 73 ~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHhccCCEEEEEEccC
Confidence 99999999999999886543
No 350
>PHA01634 hypothetical protein
Probab=96.56 E-value=0.016 Score=44.70 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=56.3
Q ss_pred cCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCcc
Q 021550 104 LELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 104 ~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
+++ .+.+|+|||++-|..++.++-. ++.+|+++|.++...+..+++++.+.+-+ -..+- ..|+. .-+.||
T Consensus 25 idv-k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~D---K~v~~---~eW~~-~Y~~~D 94 (156)
T PHA01634 25 LNV-YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICD---KAVMK---GEWNG-EYEDVD 94 (156)
T ss_pred eee-cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeee---ceeec---ccccc-cCCCcc
Confidence 444 4689999999999999998876 68899999999999999999887654321 11111 12332 116799
Q ss_pred EEEecCCC
Q 021550 184 SIFLDLPQ 191 (311)
Q Consensus 184 ~V~~d~~~ 191 (311)
+.++|...
T Consensus 95 i~~iDCeG 102 (156)
T PHA01634 95 IFVMDCEG 102 (156)
T ss_pred eEEEEccc
Confidence 99888764
No 351
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=96.56 E-value=0.0099 Score=53.79 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=68.4
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
...++.+|++||..|. |. |..+..+++.. +.+|++++.+++..+.+++ .|.+..+.....|... .+.....
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~-~v~~~~~ 209 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEE-ALKEAAP 209 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHH-HHHHHCC
Confidence 5567899999999984 43 88888899986 4689999999888777764 4543322221122211 1111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+|+-... . ..+..+.+.|+++|.++.+.
T Consensus 210 ~gvd~vld~~g-~-~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 210 DGIDCYFDNVG-G-EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCcEEEEECCC-H-HHHHHHHHhhccCCEEEEEc
Confidence 46898764333 3 46789999999999999875
No 352
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.56 E-value=0.024 Score=53.25 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred HHHHhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.+++..++ .+|++|+.+|+|. |.....+++.++ ++|+.+|.++..++.|++ .|.. .. +.. ..+
T Consensus 191 ~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G~~----~~--~~~-e~v-- 255 (413)
T cd00401 191 GIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EGYE----VM--TME-EAV-- 255 (413)
T ss_pred HHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cCCE----Ec--cHH-HHH--
Confidence 35555554 6899999999999 878888888763 589999999998877764 3432 11 111 111
Q ss_pred cCCCCccEEEecCCChhhHHHHH-HhcccCCcEEEEecCC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSA-KKMLKQDGILCSFSPC 215 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~-~~~LkpgG~lv~~~~~ 215 (311)
..+|+||.....+ ..+... .+.+++||+++..+..
T Consensus 256 ---~~aDVVI~atG~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 256 ---KEGDIFVTTTGNK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---cCCCEEEECCCCH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 3479987655544 466654 8999999999877643
No 353
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=96.52 E-value=0.013 Score=53.61 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=69.5
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEF 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~ 178 (311)
...++++|++||..|+ |. |..+.++++.. +.+|+++..+++..+.+++. .|.+..+..... +... .+....
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~-~i~~~~ 218 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDA-ALKRYF 218 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHH-HHHHhC
Confidence 4567899999999997 43 88888999986 46899999888887777652 354332221111 2211 111111
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-.... ..+..+.+.|+++|.++.++.
T Consensus 219 ~~gvd~v~d~~g~--~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 219 PNGIDIYFDNVGG--KMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCCcEEEEECCCH--HHHHHHHHHhccCcEEEEecc
Confidence 1468997744333 578899999999999998753
No 354
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=96.52 E-value=0.012 Score=53.82 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=69.2
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+++|++||..|..+ |.+++++++.++ +.++++--+++..+.++ ..|.+..+++...|+.+ ...+...
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~-~v~~~t~ 208 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLK----ELGADHVINYREEDFVE-QVRELTG 208 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHH-HHHHHcC
Confidence 446688999999999544 789999999973 26666666666555444 35665545555555442 1211111
Q ss_pred -CCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 180 -GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 180 -~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+|+|+-..... .+......|+++|.++.+...
T Consensus 209 g~gvDvv~D~vG~~--~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 209 GKGVDVVLDTVGGD--TFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCceEEEECCCHH--HHHHHHHHhccCCEEEEEecC
Confidence 3699976443333 567789999999999987654
No 355
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.50 E-value=0.0058 Score=56.52 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=51.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ 170 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~ 170 (311)
.|||||+|+|.+++..++.. +-.|+++|.-..|.+.|++...++|..+.|+++.....
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccc
Confidence 58999999999999888873 56799999999999999999999999888988876544
No 356
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=96.50 E-value=0.011 Score=53.90 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=67.0
Q ss_pred HhcCCCCC--CEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 102 MYLELVPG--CLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g--~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
...++.++ ++||..|+ | .|..+.++++..+ ..+|++++.+++..+.+++. .|.+..+.....++.+ .+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~-~i~~~ 220 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAE-RLREL 220 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHH-HHHHH
Confidence 44567766 89999987 4 3888888999863 23799999998877776643 4543322211112111 01111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
....+|+|+-..... .+..+.+.|+++|+++.+.
T Consensus 221 ~~~gvd~vid~~g~~--~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 221 CPEGVDVYFDNVGGE--ISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCCCceEEEECCCcH--HHHHHHHHhccCCEEEEEe
Confidence 114699987544443 4688999999999999875
No 357
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.40 E-value=0.075 Score=44.90 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=77.9
Q ss_pred HHhhhhcCCceeeecccHHHHHHhcCCCCCCEEEEEccccc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 80 LWTLVLSHRTQILYIADISFVIMYLELVPGCLVLESGTGSG----SLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~VLdiG~G~G----~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.|...++.......|...++|..++.-.....++++.++.| .+++..|.+ .-+++++.+-.+++.+...++.+..
T Consensus 13 AYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~ 91 (218)
T PF07279_consen 13 AYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGE 91 (218)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhh
Confidence 34444433333345666667766666566678899966543 233333333 2368999998888887777888877
Q ss_pred cCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCChhhHHHHHHhccc--CCcEEE
Q 021550 156 TGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQPWLAIPSAKKMLK--QDGILC 210 (311)
Q Consensus 156 ~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~~~~l~~~~~~Lk--pgG~lv 210 (311)
.+..+.++|+.++..+..++.. ..+|.+++|... .++...+++.++ |.|-++
T Consensus 92 ~~~~~~vEfvvg~~~e~~~~~~--~~iDF~vVDc~~-~d~~~~vl~~~~~~~~GaVV 145 (218)
T PF07279_consen 92 AGLSDVVEFVVGEAPEEVMPGL--KGIDFVVVDCKR-EDFAARVLRAAKLSPRGAVV 145 (218)
T ss_pred ccccccceEEecCCHHHHHhhc--cCCCEEEEeCCc-hhHHHHHHHHhccCCCceEE
Confidence 7877768999888543233332 569999998763 333334444443 345444
No 358
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=96.33 E-value=0.026 Score=48.85 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=73.6
Q ss_pred HHhcCCCCCCEEEEEcc--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCC
Q 021550 101 IMYLELVPGCLVLESGT--GSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPD 176 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~ 176 (311)
-+..+++||+.||.-.+ |-|.+..++++.. +.++++.-...+..+.|+++ |....|.....|..+. .+..
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhccC
Confidence 34567999999876543 4478888999886 57888888888888888865 6655577777777642 2221
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+..+|+++=.... ..+..-+..||++|.++.|.
T Consensus 213 --gKGVd~vyDsvG~--dt~~~sl~~Lk~~G~mVSfG 245 (336)
T KOG1197|consen 213 --GKGVDAVYDSVGK--DTFAKSLAALKPMGKMVSFG 245 (336)
T ss_pred --CCCceeeeccccc--hhhHHHHHHhccCceEEEec
Confidence 2568987633332 26778889999999999874
No 359
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.023 Score=53.54 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCCC-EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGC-LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~-~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
.|-. ++|.+|||.-.+...+-+. +...|+.+|+|+-.++....... .. .....+...|+....|++ ++||+|
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~-~~-~~~~~~~~~d~~~l~fed---ESFdiV 118 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNA-KE-RPEMQMVEMDMDQLVFED---ESFDIV 118 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccc-cC-CcceEEEEecchhccCCC---cceeEE
Confidence 3445 9999999998888776665 46789999999999888776543 12 233788889998888888 888888
Q ss_pred Ee---------cCCChh------hHHHHHHhcccCCcEEEEe
Q 021550 186 FL---------DLPQPW------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~---------d~~~~~------~~l~~~~~~LkpgG~lv~~ 212 (311)
+. +..+.| ..+.++.++|++||+.+.+
T Consensus 119 IdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 119 IDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred EecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 73 222333 4578899999999996654
No 360
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=96.30 E-value=0.019 Score=52.41 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~ 174 (311)
.+..+.+.++.+||..|+|. |..++.+++.. +.+ ++++..+++..+.+++ .+....+.....+... ...
T Consensus 157 ~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~ 230 (343)
T cd08235 157 AQRKAGIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGADYTIDAAEEDLVEKVRELT 230 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEecCCccCHHHHHHHHh
Confidence 33455788999999998764 77778888885 345 8888888887776643 3432111111111100 011
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ..+|+|+-.... ...+..+.+.|+++|.++.+..
T Consensus 231 ~~---~~vd~vld~~~~-~~~~~~~~~~l~~~g~~v~~~~ 266 (343)
T cd08235 231 DG---RGADVVIVATGS-PEAQAQALELVRKGGRILFFGG 266 (343)
T ss_pred CC---cCCCEEEECCCC-hHHHHHHHHHhhcCCEEEEEec
Confidence 11 458997754442 2467888999999999998753
No 361
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=96.28 E-value=0.032 Score=50.93 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--CCCCcCCCCc
Q 021550 106 LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--GFPDEFSGLA 182 (311)
Q Consensus 106 ~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~~~~~ 182 (311)
..+|++||..|+|. |..+..+++..+ ..+|+.++.+++..+.+++ .|.+..+.....+.... .+.. ...+
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~~--~~~~ 233 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELGM--TEGF 233 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhcC--CCCC
Confidence 35789999888876 778888888863 3368888888877766654 34432111111111110 1111 1468
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+|+-.... ...+..+.+.|+++|.++.++.
T Consensus 234 d~v~d~~g~-~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 234 DVGLEMSGA-PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CEEEECCCC-HHHHHHHHHHHhcCCEEEEEec
Confidence 987643433 3478889999999999998864
No 362
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.23 E-value=0.024 Score=49.58 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
.|..|+.+|-- -..++++ ...+-..+|..+|+++..+....+.+.+.|+.| ++....|+. .++|+...+.||+.+.
T Consensus 152 ~gK~I~vvGDD-DLtsia~-aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr-~plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVGDD-DLTSIAL-ALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLR-NPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEcCc-hhhHHHH-HhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhc-ccChHHHHhhCCeeec
Confidence 47789999933 2222322 222335799999999999999999999999877 999999998 7888766689999999
Q ss_pred cCCChhh----HHHHHHhcccCC---cEEEE
Q 021550 188 DLPQPWL----AIPSAKKMLKQD---GILCS 211 (311)
Q Consensus 188 d~~~~~~----~l~~~~~~Lkpg---G~lv~ 211 (311)
|+|.... ++..-...|+.- |++.+
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgi 258 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGI 258 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence 9987654 444455667754 66654
No 363
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.08 E-value=0.036 Score=53.35 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=64.0
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-----CC-------
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-----QG------- 173 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-----~~------- 173 (311)
.++.+|+.+|+|. |..+..+++.++ +.|+++|.+++.++.++. .|.. ++..|..+ ..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~----~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAE----FLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe----EEeccccccccccccceeecCH
Confidence 4678999999998 888888888874 579999999998877775 3432 22222110 00
Q ss_pred ---------CCCcCCCCccEEEecC-----CChhhHHHHHHhcccCCcEEEE
Q 021550 174 ---------FPDEFSGLADSIFLDL-----PQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 174 ---------~~~~~~~~~D~V~~d~-----~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
+.+ ....+|+||... +.|.-+.+++.+.+|||+.++=
T Consensus 232 ~~~~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 232 EFIAAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 111 014699998654 4555577888999999998773
No 364
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.07 E-value=0.081 Score=47.07 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=51.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+|+|+.||.|+++..+.+. +...++++|+++.+++..+.|+... +..+|+.+....+ ....+|+++.++|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~-~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKD-FIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhh-cCCCCCEEEeCCC
Confidence 6899999999998887765 3456788999999999888875321 4456665422111 0156999998877
Q ss_pred Ch
Q 021550 191 QP 192 (311)
Q Consensus 191 ~~ 192 (311)
+.
T Consensus 72 Cq 73 (275)
T cd00315 72 CQ 73 (275)
T ss_pred Ch
Confidence 43
No 365
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=96.00 E-value=0.054 Score=48.75 Aligned_cols=105 Identities=23% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEe--CCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFD--FHEQRAASAREDFERTGVSSFVTVGVRDIQG---QG 173 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD--~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~ 173 (311)
+.....+.++.+||..|+|. |..+..+++.. +.+|+.+. -+++..+.+++ .|+.. +.....|... ..
T Consensus 156 l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~l~~~ 228 (306)
T cd08258 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRLDVAKE----LGADA-VNGGEEDLAELVNEI 228 (306)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEECCCCCHHHHHHHHH----hCCcc-cCCCcCCHHHHHHHH
Confidence 34556778899998877654 66777788886 35676653 34444444443 34322 1111112111 01
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCC
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
... ..+|.++-... ....+....+.|+++|.++.++..
T Consensus 229 ~~~---~~vd~vld~~g-~~~~~~~~~~~l~~~G~~v~~g~~ 266 (306)
T cd08258 229 TDG---DGADVVIECSG-AVPALEQALELLRKGGRIVQVGIF 266 (306)
T ss_pred cCC---CCCCEEEECCC-ChHHHHHHHHHhhcCCEEEEEccc
Confidence 111 46899765433 334788889999999999977553
No 366
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=95.94 E-value=0.16 Score=47.58 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=63.7
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC----CC------
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG------ 171 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~----~~------ 171 (311)
..+.++.+||..|+ |. |..+..+++.. +.+++.++.+++..+.+++ .|....++....|. ..
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~~~~~~~ 258 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAG--GGNPVAVVSSPEKAEYCRE----LGAEAVIDRNDFGHWGRLPDLNTQAP 258 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCCEEecCCCcchhhcccccccccc
Confidence 56788999999997 44 77888888886 4677888888877766654 34332121110000 00
Q ss_pred -------CCC----CCc-CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 172 -------QGF----PDE-FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 -------~~~----~~~-~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+ ... ....+|+|+-... . ..+..+.+.|+++|.++.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g-~-~~~~~~~~~l~~~G~~v~~g~ 311 (398)
T TIGR01751 259 KEWTKSFKRFGKRIRELTGGEDPDIVFEHPG-R-ATFPTSVFVCRRGGMVVICGG 311 (398)
T ss_pred chhhhcchhHHHHHHHHcCCCCceEEEECCc-H-HHHHHHHHhhccCCEEEEEcc
Confidence 000 000 0145898765444 2 468889999999999998754
No 367
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.94 E-value=0.037 Score=50.54 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=63.0
Q ss_pred HHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 101 IMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
+....+.++.+||..|+ |. |..+..+++.. +.++++++.+. ..+.++ ..|.. .+...+-.. ......
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRR--GAIVIAVAGAA-KEEAVR----ALGAD---TVILRDAPLLADAKAL 239 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCch-hhHHHH----hcCCe---EEEeCCCccHHHHHhh
Confidence 35567889999999998 44 77888888886 46688877554 444443 34542 111111000 000011
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+|+|+-.... ..+..+.+.|+++|.++.+..
T Consensus 240 ~~~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g~ 274 (350)
T cd08274 240 GGEPVDVVADVVGG--PLFPDLLRLLRPGGRYVTAGA 274 (350)
T ss_pred CCCCCcEEEecCCH--HHHHHHHHHhccCCEEEEecc
Confidence 11469998754443 368889999999999987653
No 368
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.92 E-value=0.11 Score=50.33 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=79.2
Q ss_pred eeeecccHHH-HHHhcCCC--CCCEEEEEcccccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHhcCCC-CcE
Q 021550 90 QILYIADISF-VIMYLELV--PGCLVLESGTGSGSLTTSLARAVA---PTGHVYTFDFHEQRAASAREDFERTGVS-SFV 162 (311)
Q Consensus 90 ~~~~~~~~~~-i~~~~~~~--~g~~VLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v 162 (311)
....|..+.. +...+... |+..|.|..||+|.+.......+. ....+++.|.++.+...++.|+..++.. +..
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~ 275 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANF 275 (501)
T ss_pred eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcccc
Confidence 3445555443 44555543 678999999999998876555432 1246899999999999999998766653 223
Q ss_pred EEEEecCCCC-CCCCcCCCCccEEEecCCC------------------------------hhhHHHHHHhcccCCcEEEE
Q 021550 163 TVGVRDIQGQ-GFPDEFSGLADSIFLDLPQ------------------------------PWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 163 ~~~~~D~~~~-~~~~~~~~~~D~V~~d~~~------------------------------~~~~l~~~~~~LkpgG~lv~ 211 (311)
....+|.... .+.. ...||.|+.++|. .+.++..+...|++||...+
T Consensus 276 ~~~~~dtl~~~d~~~--~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 276 NIINADTLTTKEWEN--ENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred CcccCCcCCCccccc--cccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 3334444321 1111 1458887766541 12467788889999998766
Q ss_pred ecC
Q 021550 212 FSP 214 (311)
Q Consensus 212 ~~~ 214 (311)
+.|
T Consensus 354 I~~ 356 (501)
T TIGR00497 354 VCF 356 (501)
T ss_pred Eec
Confidence 655
No 369
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.91 E-value=0.0037 Score=52.20 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe-
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL- 187 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~- 187 (311)
..++||+|+|.|-.+..++..+ .+|++.|.|..|....++. +. +++.. . .+... .-++|+|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~y----nVl~~-~---ew~~t-~~k~dli~cl 176 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----NY----NVLTE-I---EWLQT-DVKLDLILCL 176 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----CC----ceeee-h---hhhhc-CceeehHHHH
Confidence 3589999999999999988875 5799999999998776642 32 12111 1 11110 035788642
Q ss_pred ---c-CCChhhHHHHHHhcccC-CcEEEE
Q 021550 188 ---D-LPQPWLAIPSAKKMLKQ-DGILCS 211 (311)
Q Consensus 188 ---d-~~~~~~~l~~~~~~Lkp-gG~lv~ 211 (311)
| ..+|...|+.+..+|+| .|++++
T Consensus 177 NlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 177 NLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 2 34677899999999999 777665
No 370
>PRK11524 putative methyltransferase; Provisional
Probab=95.89 E-value=0.024 Score=50.67 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.+|+.|||..+|||..+.+..+. +.+.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 78999999999999988766555 68999999999999999999754
No 371
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.03 Score=53.17 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=71.1
Q ss_pred CEEEEEcccccHHHHHHHH---HhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 110 CLVLESGTGSGSLTTSLAR---AVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
..|+.+|+|-|-+.-..++ ......+++++|-+|.++...+. ......+++|+++..|++...-+. .+.|+++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~---eq~DI~V 444 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPR---EQADIIV 444 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCch---hhccchH
Confidence 3578899999987655443 33345789999999998887765 333456678999999998754333 6789987
Q ss_pred ecC-------CChhhHHHHHHhcccCCcEEE
Q 021550 187 LDL-------PQPWLAIPSAKKMLKQDGILC 210 (311)
Q Consensus 187 ~d~-------~~~~~~l~~~~~~LkpgG~lv 210 (311)
+.+ .-..+.|..+.++|||.|+.+
T Consensus 445 SELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 445 SELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 522 223468999999999998765
No 372
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=95.82 E-value=0.19 Score=45.72 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=66.7
Q ss_pred HhcCCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 102 MYLELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
..+.+.++.+||..|+++ |..+..+++.. +.+|+.+..+++..+.+++ .+.+..+.....+... .+... .
T Consensus 159 ~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~-~~~~~~~ 231 (341)
T cd08297 159 KKAGLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVE-AVKELTG 231 (341)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHH-HHHHHhc
Confidence 345788999999999864 77888888886 4689999998887766642 3433211111111111 01100 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++.+... ...+..+.+.|+++|+++.++.
T Consensus 232 ~~~vd~vl~~~~~-~~~~~~~~~~l~~~g~~v~~g~ 266 (341)
T cd08297 232 GGGAHAVVVTAVS-AAAYEQALDYLRPGGTLVCVGL 266 (341)
T ss_pred CCCCCEEEEcCCc-hHHHHHHHHHhhcCCEEEEecC
Confidence 1469997753433 2367888999999999998753
No 373
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=95.69 E-value=0.061 Score=48.53 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=62.1
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+. .|..+..+++.. +..++.+..+++..+.+++ .+... +...+-....+...
T Consensus 156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~-- 224 (332)
T cd08259 156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVTRSPEKLKILKE----LGADY---VIDGSKFSEDVKKL-- 224 (332)
T ss_pred HHhCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----cCCcE---EEecHHHHHHHHhc--
Confidence 33678889999999863 377777777775 4688888887776655532 33321 11111010111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+...... .+..+.+.++++|.++.++.
T Consensus 225 ~~~d~v~~~~g~~--~~~~~~~~~~~~g~~v~~g~ 257 (332)
T cd08259 225 GGADVVIELVGSP--TIEESLRSLNKGGRLVLIGN 257 (332)
T ss_pred cCCCEEEECCChH--HHHHHHHHhhcCCEEEEEcC
Confidence 2589987654433 47788899999999987653
No 374
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.68 E-value=0.0082 Score=57.72 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC--------CCCCc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ--------GFPDE 177 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~--------~~~~~ 177 (311)
+.++..|||+||.+|++....++.++.++-|+|+|+-|-. .+.+ +...+.|+... .+..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~-c~t~v~dIttd~cr~~l~k~l~t- 108 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPN-CDTLVEDITTDECRSKLRKILKT- 108 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCc-cchhhhhhhHHHHHHHHHHHHHh-
Confidence 6788899999999999999999998878889999996631 2223 33344444321 1111
Q ss_pred CCCCccEEEecCC----Chh------------hHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLP----QPW------------LAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~----~~~------------~~l~~~~~~LkpgG~lv~ 211 (311)
.+.|+|++|.. ..| .++..+...|+.||.++.
T Consensus 109 --~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 109 --WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred --CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 35688887643 222 356677889999999875
No 375
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.60 E-value=0.022 Score=48.54 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 100 VIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
++... -.+|+.|||.-||+|..+.++.+. +.+.+++|++++.++.|++
T Consensus 184 lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 184 LIKAS-TNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHH-S-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred HHHhh-hccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 44433 367999999999999988766655 5789999999999999874
No 376
>PRK13699 putative methylase; Provisional
Probab=95.56 E-value=0.045 Score=47.24 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
-.+|+.|||.-||+|..+.+..+. +.+.+++|++++..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 368999999999999988776655 578999999999999999987653
No 377
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.47 E-value=0.023 Score=53.48 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCC-CcCCCCcc
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP-DEFSGLAD 183 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~-~~~~~~~D 183 (311)
.+..+|.+|-|+|.+...+...+ |...+++++++|++++.|..++....-. +..+...|... .... ......||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 45679999999999998888776 6799999999999999999987543222 23344444332 0000 00114699
Q ss_pred EEEecCC--Ch------------hhHHHHHHhcccCCcEEEEe
Q 021550 184 SIFLDLP--QP------------WLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~--~~------------~~~l~~~~~~LkpgG~lv~~ 212 (311)
+++.|.. ++ ..++..+...|.|.|.+++-
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 9987542 11 24788899999999999875
No 378
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.034 Score=50.24 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=64.9
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCcCCCCccEEE
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~~~~~~D~V~ 186 (311)
..++||+|.|+|.-..++-..+..-..++.+|.|+..-+.... +..+-..........|+.. ..++.. ..|++++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~lp~a--d~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLSLPAA--DLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccCCCcc--ceeehhh
Confidence 4679999999988776665555333556777877764443332 2222111112222233332 223321 4577766
Q ss_pred e-c----CCCh---hhHHHHHHhcccCCcEEEEecCCH----HHHHHHHHHHhh
Q 021550 187 L-D----LPQP---WLAIPSAKKMLKQDGILCSFSPCI----EQVQRSCESLRL 228 (311)
Q Consensus 187 ~-d----~~~~---~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l~~ 228 (311)
+ | ...+ ...++.++.++.|||.||+..+.. +-..+..+.+-+
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~ 244 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA 244 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence 3 1 1111 136899999999999999986643 334444444433
No 379
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.27 E-value=0.14 Score=41.90 Aligned_cols=99 Identities=27% Similarity=0.221 Sum_probs=61.5
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEE--eCCHHHHHH---HHHHHHhcCCCCcEEE-EEecCCCCC-CCCcCCCCccEE
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTF--DFHEQRAAS---AREDFERTGVSSFVTV-GVRDIQGQG-FPDEFSGLADSI 185 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~g~~~~v~~-~~~D~~~~~-~~~~~~~~~D~V 185 (311)
|-+|-|.=.++..|++..+....+++. |..++..+. +.+++....... +.+ ...|+.... ........||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEE
Confidence 457888889999999997645666664 544443332 234544432222 222 334665411 111112689999
Q ss_pred EecCCChh------------------hHHHHHHhcccCCcEEEEe
Q 021550 186 FLDLPQPW------------------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~------------------~~l~~~~~~LkpgG~lv~~ 212 (311)
+.+.|..- .++..+.++|+++|.+.+-
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99887432 4788999999999998764
No 380
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=95.25 E-value=0.22 Score=43.84 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=67.0
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
+....+.++.+||..|+|. |..+..+++..+ ..+|++++.+++..+.+++. |..+.+..... .....
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~----~~~~~--- 157 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEAL----GPADPVAADTA----DEIGG--- 157 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHc----CCCccccccch----hhhcC---
Confidence 4467788999999999877 778888888864 22499999999888766642 31111110000 01122
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++..... ...+..+.+.|+++|.++.++.
T Consensus 158 ~~~d~vl~~~~~-~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 158 RGADVVIEASGS-PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred CCCCEEEEccCC-hHHHHHHHHHhcCCcEEEEEec
Confidence 468987754333 2367888999999999987753
No 381
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.16 E-value=0.049 Score=45.96 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=69.6
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhc-----------------------------
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAP-TGHVYTFDFHEQRAASAREDFERT----------------------------- 156 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----------------------------- 156 (311)
..+-++.|-+||+|++.-.+.-.-++ -..|++.|+++++++.|++|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44458999999999987666544211 268999999999999999976432
Q ss_pred -------------CCCCcEEEEEecCCCC----CCCCcCCCCccEEEecCC----Chh----------hHHHHHHhcccC
Q 021550 157 -------------GVSSFVTVGVRDIQGQ----GFPDEFSGLADSIFLDLP----QPW----------LAIPSAKKMLKQ 205 (311)
Q Consensus 157 -------------g~~~~v~~~~~D~~~~----~~~~~~~~~~D~V~~d~~----~~~----------~~l~~~~~~Lkp 205 (311)
+... ..+...|+.+. ..+. ....|+|+.|.| ..| +.|+.+..+| |
T Consensus 130 sA~RL~~~l~~~g~~~p-~~~~~aDvf~~~~~~~~~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p 205 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEP-HAIFRADVFDPSPLAVLDA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-P 205 (246)
T ss_dssp HHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHhcCCCCc-hhheeecccCCchhhhhcc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-C
Confidence 1122 45666777641 0111 134799998887 223 5788999999 4
Q ss_pred CcEEEEecCCHHHHHHHHHHHhhcCceeeEEEeeceeeEEe
Q 021550 206 DGILCSFSPCIEQVQRSCESLRLNFTDIRTFEILLRTYEIR 246 (311)
Q Consensus 206 gG~lv~~~~~~~~~~~~~~~l~~~f~~~~~~e~~~r~~~v~ 246 (311)
...+++++.....+. ...|..++.+....|...+.
T Consensus 206 ~~sVV~v~~k~~Ki~------~~~~r~~~rlKvGkR~~~l~ 240 (246)
T PF11599_consen 206 ERSVVAVSDKGRKIP------HDRFRRLERLKVGKRQAALF 240 (246)
T ss_dssp TT-EEEEEESSSS---------TTS--SEEEEETTEEEEEE
T ss_pred CCcEEEEecCCcccc------cchhHHHHHHhccceEEEEE
Confidence 544444433222111 12466666666666665544
No 382
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.15 E-value=0.015 Score=53.74 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-EEEEEecCC
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF-VTVGVRDIQ 170 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~D~~ 170 (311)
.++|..|.|+.||.|-+++.++.. +++|++.|.++++++..+.|+..+.++.. +++...|+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 578999999999999999998887 59999999999999999999988887665 888887765
No 383
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.93 E-value=0.11 Score=46.35 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc---------------------------
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSF--------------------------- 161 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~--------------------------- 161 (311)
.-+||.-|||.|.++..++.. +-.+-+-|+|--|+-...=-+......+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHh---cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 458999999999999999987 24445556665554322211100001111
Q ss_pred ------------EEEEEecCCCCCCCC-cCCCCccEEEe----cCC-ChhhHHHHHHhcccCCcEEEEecC
Q 021550 162 ------------VTVGVRDIQGQGFPD-EFSGLADSIFL----DLP-QPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 162 ------------v~~~~~D~~~~~~~~-~~~~~~D~V~~----d~~-~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+.+ .+.. ...+.||+|+. |.. .-.++|+.+.+.|+|||..+-++|
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~e-vy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLE-VYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccccCCCCCCccccccceeE-EecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccc
Confidence 1112233321 1111 01146898863 433 334688999999999999987665
No 384
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.93 E-value=0.11 Score=45.25 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=66.7
Q ss_pred CCCEEEEEcccccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHhcC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV---A-PTGHVYTFDFH--------------------------EQRAASAREDFERTG 157 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~---~-~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~g 157 (311)
-...|+|+||--|..++.++..+ + +..+++++|.- ....+..++++...|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34589999999998776554433 2 34678888531 114555666666666
Q ss_pred C-CCcEEEEEecCCCCCCCCcCCCCccEEEecCC---ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 158 V-SSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP---QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 158 ~-~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~---~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
+ .+++.++.+.+.+ .++......+-++.+|.. ....+|+.++..|.|||++++=........+.+..++
T Consensus 154 l~~~~v~~vkG~F~d-TLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~ 226 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPD-TLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFR 226 (248)
T ss_dssp TSSTTEEEEES-HHH-HCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHH
T ss_pred CCcccEEEECCcchh-hhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHH
Confidence 4 3469999999863 344322245666666654 2346899999999999999974333333333333333
No 385
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=94.77 E-value=0.16 Score=45.17 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHHhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++...+++|++|+..++. .|....++|+.. +++|+++=-+++.++.+.+. .|.+..++....|+.. .+.+.
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlk--G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~-~L~~a 215 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLK--GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQ-ALKEA 215 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhh--CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHH-HHHHH
Confidence 6677788999998887653 389999999984 69999999999988888763 5666667777766652 33332
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
.+..+|+.|-|...+ .++.+...|++.++|.+
T Consensus 216 ~P~GIDvyfeNVGg~--v~DAv~~~ln~~aRi~~ 247 (340)
T COG2130 216 CPKGIDVYFENVGGE--VLDAVLPLLNLFARIPV 247 (340)
T ss_pred CCCCeEEEEEcCCch--HHHHHHHhhccccceee
Confidence 336789888777665 67778888888888775
No 386
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=94.71 E-value=0.12 Score=46.79 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=61.0
Q ss_pred hcCCCCCCEEEEE--cccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-C
Q 021550 103 YLELVPGCLVLES--GTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-F 178 (311)
Q Consensus 103 ~~~~~~g~~VLdi--G~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~ 178 (311)
.... ++..+|-+ |+|. |..+.++++.+ +.++++++.+++..+.+++ .|.+..+.....+... .+... .
T Consensus 138 ~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-~v~~~~~ 209 (324)
T cd08291 138 TARE-EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLE-DLKELIA 209 (324)
T ss_pred hhcc-CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHH-HHHHHhC
Confidence 3344 45555554 6665 77888888886 4689999999988877765 4543322211112111 01000 0
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+|+-..... .+....+.|+++|+++.+..
T Consensus 210 ~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 210 KLNATIFFDAVGGG--LTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred CCCCcEEEECCCcH--HHHHHHHhhCCCCEEEEEEe
Confidence 14689877544432 35667888999999998753
No 387
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.45 E-value=0.17 Score=45.88 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=66.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-CCcCC
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF-PDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~-~~~~~ 179 (311)
..+.+.++.+||..|+|. |..+..+++..+ ...++.++.+++..+.+++ .+.. .++..+-..... .....
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcC
Confidence 567788999999998764 777777888752 2348889989888777643 3432 122111110000 00011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..+. ...+..+.+.|+++|.++.++.
T Consensus 225 ~~vd~v~~~~~~-~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 225 YGFDVVIEATGV-PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCcEEEECCCC-hHHHHHHHHHHhcCCEEEEEec
Confidence 569998754432 3478888999999999987653
No 388
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.41 E-value=0.32 Score=45.61 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=64.0
Q ss_pred HHHhcC-CCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 100 VIMYLE-LVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~-~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
+++..+ ...|++|+.+|+|. |......++.+ +.+|+++|.++.....|.. .|. .+. +.. ..+
T Consensus 185 i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~le-eal--- 248 (406)
T TIGR00936 185 ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TME-EAA--- 248 (406)
T ss_pred HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHH-HHH---
Confidence 444444 36799999999998 77777778776 4689999999876544432 232 111 221 112
Q ss_pred CCCCccEEEecCCChhhHHH-HHHhcccCCcEEEEecCC
Q 021550 178 FSGLADSIFLDLPQPWLAIP-SAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~-~~~~~LkpgG~lv~~~~~ 215 (311)
...|+||..... ...+. .....+++|++++..+-.
T Consensus 249 --~~aDVVItaTG~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 249 --KIGDIFITATGN-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred --hcCCEEEECCCC-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 346998765544 44555 488899999999876553
No 389
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.25 E-value=0.19 Score=38.12 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=62.5
Q ss_pred EEEEcccccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEecC
Q 021550 112 VLESGTGSGSLTTSLARAVAPTG-HVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFLDL 189 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~d~ 189 (311)
|+.+|+ |.++..+++.+...+ .|+.+|.+++.++.+++. + +.++.+|..+.. +....-..+|.|++..
T Consensus 1 vvI~G~--g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGY--GRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES---SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcC--CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEcc
Confidence 344555 556666666554445 899999999998877642 3 668889988621 2111115689888877
Q ss_pred CChhhH--HHHHHhcccCCcEEEEecCCHHHHH
Q 021550 190 PQPWLA--IPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 190 ~~~~~~--l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
++.... +....+.+.|...+++.....+...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~ 103 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAE 103 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 766543 3345566778888887776655433
No 390
>PLN02494 adenosylhomocysteinase
Probab=94.19 E-value=0.24 Score=47.15 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred HHHHhcCC-CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC
Q 021550 99 FVIMYLEL-VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 99 ~i~~~~~~-~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
.+++..++ -.|++|+.+|+|. |......++.+ +.+|+++|.++.....|.. .|.. +. +.. ..+
T Consensus 243 ~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~~----vv--~le-Eal-- 307 (477)
T PLN02494 243 GLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGYQ----VL--TLE-DVV-- 307 (477)
T ss_pred HHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCCe----ec--cHH-HHH--
Confidence 35555554 5789999999998 77777777776 3689999999876444432 2322 11 221 111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...|+|+........+.......||+||+|+..+-
T Consensus 308 ---~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 308 ---SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ---hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 34799887555443345888999999999997655
No 391
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.18 E-value=0.2 Score=45.60 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~ 177 (311)
.+..+.+.++.+||..|+|. |..+..+++..+ ...+++++.+++..+.+++ .+....+......... .....
T Consensus 151 ~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~- 224 (343)
T cd08236 151 AVRLAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVARE----LGADDTINPKEEDVEKVRELTE- 224 (343)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEecCccccHHHHHHHhC-
Confidence 34466788999999998776 778888888863 2348899888877666543 3432211111111000 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ....+..+.+.|+++|.++.++.
T Consensus 225 -~~~~d~vld~~g-~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 225 -GRGADLVIEAAG-SPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred -CCCCCEEEECCC-CHHHHHHHHHHhhcCCEEEEEcc
Confidence 135999775433 33467888999999999998763
No 392
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.07 E-value=0.37 Score=45.48 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred CCC-CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELV-PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~-~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
++. .|++|+.+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +.. ..+ ..+
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~-eal-----~~a 268 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TME-EAA-----ELG 268 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHH-HHH-----hCC
Confidence 443 799999999998 77777777776 4689999999876544432 232 211 221 111 357
Q ss_pred cEEEecCCChhhHHH-HHHhcccCCcEEEEecCCH
Q 021550 183 DSIFLDLPQPWLAIP-SAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 183 D~V~~d~~~~~~~l~-~~~~~LkpgG~lv~~~~~~ 216 (311)
|+||.....+ ..+. .....+|+|++++......
T Consensus 269 DVVI~aTG~~-~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 269 DIFVTATGNK-DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CEEEECCCCH-HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 9987655443 4565 6889999999998765443
No 393
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=93.88 E-value=0.3 Score=43.33 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=65.6
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--CCCCCc
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG--QGFPDE 177 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~--~~~~~~ 177 (311)
....+.++.+||..|+ |. |..+..+++.+ +..+++++.+++..+.+++ .+....+.....+... ..+..
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~- 202 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREITG- 202 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHcC-
Confidence 3466788999999994 43 77888888886 4789999888887776643 3442211111111110 00111
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
...+|+++-.... ..+..+.+.|+++|.++.++
T Consensus 203 -~~~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 203 -GRGVDVVYDGVGK--DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred -CCCeeEEEECCCc--HhHHHHHHhhccCcEEEEEe
Confidence 1469998755444 36788899999999999764
No 394
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=93.81 E-value=0.28 Score=44.23 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=65.7
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|+ |. |..+..+++.. +.++++++.++...+.+++. .+....+.....+... .+.....
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~v~~~~~ 212 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAE-ALKEAAP 212 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHH-HHHHhcc
Confidence 3456788999999984 43 77888888885 46899999888877766542 3432212221111110 0111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.+|+++-.... ..+..+.+.|+++|.++.++
T Consensus 213 ~~~d~vi~~~g~--~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 213 DGIDVYFDNVGG--EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred CCceEEEEcchH--HHHHHHHHhcCCCceEEEEe
Confidence 468987744333 47888899999999998765
No 395
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.80 E-value=0.22 Score=45.82 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=78.7
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-CCcEEEE
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-SSFVTVG 165 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~g~-~~~v~~~ 165 (311)
+..+.-+.+.+++.+++...|+|.|-|.+..+++... ....-+|+|+.....+.|..+. ...|- .+.++.+
T Consensus 178 ~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 178 LEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3334457788899999999999999999998888764 4566778887665444443322 22343 3457888
Q ss_pred EecCCCCCCCCcCCCCccEEEecCC--Chh--hHHHHHHhcccCCcEEEEecC
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDLP--QPW--LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~~--~~~--~~l~~~~~~LkpgG~lv~~~~ 214 (311)
++++.....-.......++||++-. +|. .-+.+++.-+++|-+++.-.|
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 8888752222222245788876421 222 234588889999999986433
No 396
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.65 E-value=1.5 Score=38.25 Aligned_cols=108 Identities=15% Similarity=0.034 Sum_probs=59.7
Q ss_pred HhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-----cCCCCcEEEEEecCCCCCCC
Q 021550 102 MYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-----TGVSSFVTVGVRDIQGQGFP 175 (311)
Q Consensus 102 ~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----~g~~~~v~~~~~D~~~~~~~ 175 (311)
...+.+ ...+|||+|+|+|..++.++... ...|...|... .++..+.+... ..+...+.+...+-......
T Consensus 79 ~~~g~~~~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~ 155 (248)
T KOG2793|consen 79 TLIGFKTKYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV 155 (248)
T ss_pred ccccccccceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH
Confidence 334444 46789999999998777777663 57777777643 33333333221 22221244444333321111
Q ss_pred CcCCCC-ccEEEe-----cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 176 DEFSGL-ADSIFL-----DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 176 ~~~~~~-~D~V~~-----d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...... +|+|+. +...+..++..++..|..++.+.+.
T Consensus 156 ~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 156 SFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred hhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 111133 788864 3445556778888888888854443
No 397
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=93.62 E-value=0.27 Score=44.16 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=64.1
Q ss_pred HHHhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
.+..+.+.+|.+||..|+ | .|..+..+++.+ +.+++.+.-+++..+.+++ .|....+.....+... .+..
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~ 203 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRDAGVAELRA----LGIGPVVSTEQPGWQD-KVREA 203 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHh----cCCCEEEcCCCchHHH-HHHHH
Confidence 345567889999999886 4 388888888886 3577777666665555543 2442211111111110 0000
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-....+ .+..+.+.|+++|.++.+..
T Consensus 204 ~~~~~~d~v~d~~g~~--~~~~~~~~l~~~g~~v~~g~ 239 (324)
T cd08292 204 AGGAPISVALDSVGGK--LAGELLSLLGEGGTLVSFGS 239 (324)
T ss_pred hCCCCCcEEEECCCCh--hHHHHHHhhcCCcEEEEEec
Confidence 0114699987544443 56888999999999997753
No 398
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.41 E-value=0.32 Score=43.92 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......+|+.+|||. |...+..+....+..+|..++.+++..+...+.+...+ +.+...+.. ..+
T Consensus 116 a~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~----~~~~~~~~~-~av---- 186 (304)
T PRK07340 116 AARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG----PTAEPLDGE-AIP---- 186 (304)
T ss_pred HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----CeeEECCHH-HHh----
Confidence 44556556678999999997 55544444444455789999999887776666654332 222222222 112
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 221 (311)
..+|+|+...+.+..++.. .++||-.+...+.......+
T Consensus 187 -~~aDiVitaT~s~~Pl~~~---~~~~g~hi~~iGs~~p~~~E 225 (304)
T PRK07340 187 -EAVDLVVTATTSRTPVYPE---AARAGRLVVAVGAFTPDMAE 225 (304)
T ss_pred -hcCCEEEEccCCCCceeCc---cCCCCCEEEecCCCCCCccc
Confidence 4689999877766666653 37999988877655433333
No 399
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=93.39 E-value=0.36 Score=43.09 Aligned_cols=106 Identities=25% Similarity=0.208 Sum_probs=64.2
Q ss_pred HHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-c
Q 021550 101 IMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGH-VYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-E 177 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~ 177 (311)
+....+.++.+||..|+|. |..+..+++.. +.+ ++.+..+++..+.+++ .+....+.....+.. ..+.. .
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~l~~~~ 194 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAA--GARRVIAIDRRPARLALARE----LGATEVVTDDSEAIV-ERVRELT 194 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCceEecCCCcCHH-HHHHHHc
Confidence 3466788999999998765 67777788886 355 8888888777664432 343221110001110 00100 0
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
....+|+++-.... ...+..+.+.|+++|.++.++.
T Consensus 195 ~~~~vd~vld~~g~-~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 195 GGAGADVVIEAVGH-QWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CCCCCCEEEECCCC-HHHHHHHHHHhccCCEEEEEcc
Confidence 01468997754332 3467888999999999998754
No 400
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.34 E-value=0.59 Score=41.70 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=66.2
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
...+.+|++||..|+ | .|..+.++++.. +.+|+++..+++..+.+++ .|... +-....+... .+... ..
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~-~i~~~-~~ 207 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKE----LGADE-VVIDDGAIAE-QLRAA-PG 207 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEecCccHHH-HHHHh-CC
Confidence 445788999999997 3 388888899886 4779999888887666643 45432 2111111111 01111 25
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|+++-.... ..+..+.+.|+++|.++.++.
T Consensus 208 ~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 208 GFDKVLELVGT--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred CceEEEECCCh--HHHHHHHHHhccCCEEEEEcc
Confidence 79998754443 368889999999999987653
No 401
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=93.33 E-value=0.44 Score=42.78 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=67.1
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD- 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~- 176 (311)
+...+.+.++.+||..|+ |. |..+..+++.. +.++++++.+++..+.+++ .+....+.....+... .+..
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~ 206 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPD-QVREA 206 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHH-HHHHH
Confidence 345567889999999985 33 77888888886 4679999988887776643 3432211111111110 0100
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.....+|+|+-....+ ....+.+.|+++|.++.++.
T Consensus 207 ~~~~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 207 LGGGGVTVVLDGVGGA--IGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred cCCCCceEEEECCChH--hHHHHHHHhccCcEEEEEec
Confidence 0114699987554443 45888999999999997754
No 402
>PRK13699 putative methylase; Provisional
Probab=93.26 E-value=0.24 Score=42.71 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=45.7
Q ss_pred EEEEecCCC--CCCCCcCCCCccEEEecCCCh--------------------hhHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 163 TVGVRDIQG--QGFPDEFSGLADSIFLDLPQP--------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 163 ~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~--------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
++.++|..+ ..+++ +++|+||.|+|-. ...+.++.++|||||.++++.... +..
T Consensus 3 ~l~~gD~le~l~~lpd---~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-~~~ 78 (227)
T PRK13699 3 RFILGNCIDVMARFPD---NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-RVD 78 (227)
T ss_pred eEEechHHHHHHhCCc---cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-cHH
Confidence 466777764 24565 7899999988742 146788999999999998765532 234
Q ss_pred HHHHHHhh-cCceee
Q 021550 221 RSCESLRL-NFTDIR 234 (311)
Q Consensus 221 ~~~~~l~~-~f~~~~ 234 (311)
.+...+++ +|.-..
T Consensus 79 ~~~~al~~~GF~l~~ 93 (227)
T PRK13699 79 RFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHCCCEEee
Confidence 45555555 665433
No 403
>PRK11524 putative methyltransferase; Provisional
Probab=93.20 E-value=0.24 Score=44.22 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEEEecCCC--CCCCCcCCCCccEEEecCCCh---------------------hhHHHHHHhcccCCcEEEEecCCHHH
Q 021550 162 VTVGVRDIQG--QGFPDEFSGLADSIFLDLPQP---------------------WLAIPSAKKMLKQDGILCSFSPCIEQ 218 (311)
Q Consensus 162 v~~~~~D~~~--~~~~~~~~~~~D~V~~d~~~~---------------------~~~l~~~~~~LkpgG~lv~~~~~~~~ 218 (311)
..++++|+.+ ..+++ ++||+||.|+|-. ...+..+.++|||||.++++.... .
T Consensus 9 ~~i~~gD~~~~l~~l~~---~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~-~ 84 (284)
T PRK11524 9 KTIIHGDALTELKKIPS---ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE-N 84 (284)
T ss_pred CEEEeccHHHHHHhccc---CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch-h
Confidence 4678888875 23554 7899999998821 247789999999999999875533 2
Q ss_pred HHHHHHHHhhcCc
Q 021550 219 VQRSCESLRLNFT 231 (311)
Q Consensus 219 ~~~~~~~l~~~f~ 231 (311)
+..+...++.+|.
T Consensus 85 ~~~~~~~~~~~f~ 97 (284)
T PRK11524 85 MPFIDLYCRKLFT 97 (284)
T ss_pred hhHHHHHHhcCcc
Confidence 3333344444553
No 404
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=93.17 E-value=1 Score=39.81 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=61.1
Q ss_pred cCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 104 LELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 104 ~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
..+.++.+||..|+ |. |..+..+++.. +.+++.++.++ ..+.++ ..+....+.....+... .... ..
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~-~~~~~~----~~g~~~~~~~~~~~~~~-~~~~---~~ 208 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA-NADFLR----SLGADEVIDYTKGDFER-AAAP---GG 208 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch-hHHHHH----HcCCCEEEeCCCCchhh-ccCC---CC
Confidence 34788999999996 43 77777788875 46788777665 554443 23432211111111111 1111 46
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|+++-..+.. .+..+.+.|+++|.++.++.
T Consensus 209 ~d~v~~~~~~~--~~~~~~~~l~~~g~~v~~g~ 239 (309)
T cd05289 209 VDAVLDTVGGE--TLARSLALVKPGGRLVSIAG 239 (309)
T ss_pred ceEEEECCchH--HHHHHHHHHhcCcEEEEEcC
Confidence 89988655554 67888999999999987654
No 405
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=93.14 E-value=0.83 Score=43.64 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|.+|+.+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. ++. ..+ ...|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~----~G~----~~~--~le-ell-----~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAM----EGY----QVV--TLE-DVV-----ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHh----cCc----eec--cHH-HHH-----hcCCEE
Confidence 4689999999998 77777777765 4689999998776543332 232 221 221 111 357999
Q ss_pred EecCCChhhHH-HHHHhcccCCcEEEEecCC
Q 021550 186 FLDLPQPWLAI-PSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 186 ~~d~~~~~~~l-~~~~~~LkpgG~lv~~~~~ 215 (311)
+...... .++ ......||||++|+-.+-.
T Consensus 314 I~atGt~-~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 314 VTATGNK-DIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EECCCcc-cccCHHHHhccCCCcEEEEcCCC
Confidence 8876543 355 4888999999999976655
No 406
>PTZ00357 methyltransferase; Provisional
Probab=92.70 E-value=0.87 Score=45.09 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred EEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHH---HhcC-----CCCcEEEEEecCCCCCCCC---
Q 021550 111 LVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDF---ERTG-----VSSFVTVGVRDIQGQGFPD--- 176 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~---~~~g-----~~~~v~~~~~D~~~~~~~~--- 176 (311)
.|+.+|+|-|-+.-..+++. +-..+|+++|.++..+.....+. ..+. ..+.|+++..|++....++
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999998776555443 33468999999977544444332 2221 1345999999998743321
Q ss_pred -----cCCCCccEEEecC----C---ChhhHHHHHHhcccC----CcE
Q 021550 177 -----EFSGLADSIFLDL----P---QPWLAIPSAKKMLKQ----DGI 208 (311)
Q Consensus 177 -----~~~~~~D~V~~d~----~---~~~~~l~~~~~~Lkp----gG~ 208 (311)
...+++|+||+.+ . -..+.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0113799998632 2 223678888888886 776
No 407
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=92.64 E-value=0.59 Score=42.16 Aligned_cols=104 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++++||..|+ |. |..+..+++.. +.+|+.+..+++..+.+++ .|.+..+.....+.. ..+.....
T Consensus 133 ~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~-~~~~~~~~ 205 (329)
T cd08250 133 EVGEMKSGETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLG-EVLKKEYP 205 (329)
T ss_pred HhcCCCCCCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHH-HHHHHhcC
Confidence 3456789999999985 43 77888888886 4678888888877666643 343221111111110 00100011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+|+-.... ..+..+.+.|+++|.++.++.
T Consensus 206 ~~vd~v~~~~g~--~~~~~~~~~l~~~g~~v~~g~ 238 (329)
T cd08250 206 KGVDVVYESVGG--EMFDTCVDNLALKGRLIVIGF 238 (329)
T ss_pred CCCeEEEECCcH--HHHHHHHHHhccCCeEEEEec
Confidence 458987754443 478888999999999987643
No 408
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.62 E-value=0.56 Score=42.78 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=69.5
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......++.-+|||. |..-+..+..+.+-.+|..+|.+++..+...+.+...+.. +.. ..|.. ...
T Consensus 119 aa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~--v~~-~~~~~-eav---- 190 (325)
T TIGR02371 119 AAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP--VRA-ATDPR-EAV---- 190 (325)
T ss_pred HHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc--EEE-eCCHH-HHh----
Confidence 34556555668899999998 5543333333445688999999999887766665544421 222 22332 222
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
...|+|+...+....++. ...|+||-.+..++.......++-
T Consensus 191 -~~aDiVitaT~s~~P~~~--~~~l~~g~~v~~vGs~~p~~~Eld 232 (325)
T TIGR02371 191 -EGCDILVTTTPSRKPVVK--ADWVSEGTHINAIGADAPGKQELD 232 (325)
T ss_pred -ccCCEEEEecCCCCcEec--HHHcCCCCEEEecCCCCcccccCC
Confidence 357999987765544443 346799998887765544344433
No 409
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=92.55 E-value=0.64 Score=41.30 Aligned_cols=103 Identities=21% Similarity=0.198 Sum_probs=64.5
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
...+.++..||..|+ | .|..+..+++.. +..|+.++.+++..+.+++ .+....+.....+... .+... ..
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~i~~~~~~ 206 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRE-RVKALTGG 206 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHH-HHHHHcCC
Confidence 566788999999998 3 367777778775 4679999988887776643 3432212111111110 00000 01
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++..... ..+..+.+.++++|.++.++.
T Consensus 207 ~~~d~v~~~~g~--~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 207 RGVDVVYDPVGG--DVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred CCcEEEEECccH--HHHHHHHHhhccCCEEEEEcc
Confidence 468987754443 467788899999999987653
No 410
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.55 E-value=0.58 Score=42.46 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=67.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEF 178 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 178 (311)
..+++......+|+.+|+|. |...+..+..+.+..+|+.++.+++..+...+.+...+.. +.. ..+.. ...
T Consensus 116 a~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~--~~~-~~~~~-~av---- 187 (314)
T PRK06141 116 AASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD--AEV-VTDLE-AAV---- 187 (314)
T ss_pred HHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc--eEE-eCCHH-HHH----
Confidence 44556556678999999997 6655443344345678999999988776666555443321 222 12221 112
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
...|+|+...+....++.. ..++||-.+...........++-..+
T Consensus 188 -~~aDIVi~aT~s~~pvl~~--~~l~~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 188 -RQADIISCATLSTEPLVRG--EWLKPGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred -hcCCEEEEeeCCCCCEecH--HHcCCCCEEEeeCCCCcccccCCHHH
Confidence 3589987655544333432 56899887665555444344444333
No 411
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=92.49 E-value=0.62 Score=41.91 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=65.0
Q ss_pred HhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEE-ecCCCCCCCCc-C
Q 021550 102 MYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGV-RDIQGQGFPDE-F 178 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~-~ 178 (311)
....+.+|.+|+..|+|. |..+..+++.. +.+++.++.+++..+.+.+ .+....+.... .+.. ..+... .
T Consensus 154 ~~~~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 226 (336)
T cd08276 154 GLGPLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWG-EEVLKLTG 226 (336)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHH-HHHHHHcC
Confidence 345678899998887765 66777777775 4679999988888777664 24332111111 1111 001000 1
Q ss_pred CCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...+|+++-... ...+..+.+.|+++|.++.++.
T Consensus 227 ~~~~d~~i~~~~--~~~~~~~~~~l~~~G~~v~~g~ 260 (336)
T cd08276 227 GRGVDHVVEVGG--PGTLAQSIKAVAPGGVISLIGF 260 (336)
T ss_pred CCCCcEEEECCC--hHHHHHHHHhhcCCCEEEEEcc
Confidence 146899875443 3467888999999999997754
No 412
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.49 E-value=0.92 Score=40.83 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~~~~~~D~V 185 (311)
.+.+|+.+|.|. |......++.+ +.+|+.+|.+++..+.++. .|. .+... +.. ..+ ..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~----~G~----~~~~~~~l~-~~l-----~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITE----MGL----SPFHLSELA-EEV-----GKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCC----eeecHHHHH-HHh-----CCCCEE
Confidence 578999999997 66666677775 3699999999876555442 342 22211 111 111 458999
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
|...|... .-+...+.++||+.++-.
T Consensus 215 I~t~p~~~-i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 215 FNTIPALV-LTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EECCChhh-hhHHHHHcCCCCcEEEEE
Confidence 98766432 345677889998887643
No 413
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=92.43 E-value=0.52 Score=42.48 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred hcCCCCCCEEEEEc-ccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCC-cCC
Q 021550 103 YLELVPGCLVLESG-TGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPD-EFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG-~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~-~~~ 179 (311)
...+.+|.+|+..| +|. |..+..+++.. +.++++++.+++..+.+++ .|....+.....+... .+.. ...
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 207 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVE-RVKEITGG 207 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHH-HHHHHcCC
Confidence 45678899999886 443 78888888886 4679999988887776643 4543211111111100 0000 011
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-.... ..+..+.+.|+++|.++.+..
T Consensus 208 ~~~d~vl~~~~~--~~~~~~~~~l~~~g~~v~~g~ 240 (327)
T PRK10754 208 KKVRVVYDSVGK--DTWEASLDCLQRRGLMVSFGN 240 (327)
T ss_pred CCeEEEEECCcH--HHHHHHHHHhccCCEEEEEcc
Confidence 458987744333 367788999999999998753
No 414
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=92.42 E-value=0.62 Score=41.92 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=64.3
Q ss_pred hcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec-CCC---CCCCC
Q 021550 103 YLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD-IQG---QGFPD 176 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D-~~~---~~~~~ 176 (311)
...+.++.+||..|+ | .|..+..+++.. +.+++.+..+++..+.+++ .|....+.....| ... .....
T Consensus 135 ~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 208 (334)
T PTZ00354 135 HGDVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGE 208 (334)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCC
Confidence 356788999999984 3 388888888886 3566778888887777743 3443212211111 111 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++-... ...+..+.+.|+++|.++.+.
T Consensus 209 ---~~~d~~i~~~~--~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 209 ---KGVNLVLDCVG--GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred ---CCceEEEECCc--hHHHHHHHHHhccCCeEEEEe
Confidence 46899875443 247788999999999998764
No 415
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=92.32 E-value=0.47 Score=43.07 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=58.1
Q ss_pred hcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCH----HHHHHHHHHHHhcCCCCcEEEEEe---cCCCCC
Q 021550 103 YLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHE----QRAASAREDFERTGVSSFVTVGVR---DIQGQG 173 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~----~~~~~a~~~~~~~g~~~~v~~~~~---D~~~~~ 173 (311)
...+.++.+||..|+ |. |..+..+++..+ .+++.+..++ +..+.++ ..|.+..+..... +.. ..
T Consensus 141 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~-~~ 213 (341)
T cd08290 141 FVKLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALGADHVLTEEELRSLLAT-EL 213 (341)
T ss_pred hcccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcCCCEEEeCcccccccHH-HH
Confidence 456789999999986 43 788888888863 5565554443 3334333 3454321211111 111 00
Q ss_pred CCCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 174 FPDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+.....+.+|+|+-..... .+..+.+.|+++|.++.++
T Consensus 214 i~~~~~~~~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g 251 (341)
T cd08290 214 LKSAPGGRPKLALNCVGGK--SATELARLLSPGGTMVTYG 251 (341)
T ss_pred HHHHcCCCceEEEECcCcH--hHHHHHHHhCCCCEEEEEe
Confidence 1111112589977544432 4567889999999999765
No 416
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=92.14 E-value=0.94 Score=39.41 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=65.3
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCC--CCcEEEEEecCCC---CCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGV--SSFVTVGVRDIQG---QGF 174 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~D~~~---~~~ 174 (311)
....+.++++|+..|. |. |..+..+++.. +.+|+.++.+++..+.+++ .|. ...+.....+... ...
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCChhheeeCCCccHHHHHHHHh
Confidence 4567889999999883 43 77777888875 4689999989888877743 343 1212111111110 011
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.. ..+|.++-... . ..+..+.+.|+++|.++.++.
T Consensus 172 ~~---~~~d~vi~~~~-~-~~~~~~~~~l~~~g~~v~~g~ 206 (288)
T smart00829 172 GG---RGVDVVLNSLA-G-EFLDASLRCLAPGGRFVEIGK 206 (288)
T ss_pred CC---CCcEEEEeCCC-H-HHHHHHHHhccCCcEEEEEcC
Confidence 11 35898774444 2 467788899999999997754
No 417
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.04 E-value=0.51 Score=40.42 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=52.5
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCCCcC--CCCccE
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-GVSSFVTVGVRDIQGQGFPDEF--SGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~~--~~~~D~ 184 (311)
++-++||||.|.-..=-.+-.+. =+-+.++.|+++..++.|+.++..+ ++...+++....-....|+... .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 45578999888632211111111 1357788999999999999999887 6666677665432222333211 267999
Q ss_pred EEecCC
Q 021550 185 IFLDLP 190 (311)
Q Consensus 185 V~~d~~ 190 (311)
+.+++|
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999988
No 418
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=91.99 E-value=0.85 Score=41.00 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=61.8
Q ss_pred CCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
++.+||..|+ |. |..+..+++.. +.+|+.++.+++..+.+++ .|....+.. .+.....+.......+|+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~--~~~~~~~~~~~~~~~~d~v 217 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKK----LGAKEVIPR--EELQEESIKPLEKQRWAGA 217 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHH----cCCCEEEcc--hhHHHHHHHhhccCCcCEE
Confidence 4679999998 54 77888888886 3689999988887776653 344221111 1110011111011468987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+-... . ..+..+.+.|+++|.++.++.
T Consensus 218 ld~~g-~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 218 VDPVG-G-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred EECCc-H-HHHHHHHHHhhcCCEEEEEee
Confidence 64333 3 467889999999999998864
No 419
>PRK08618 ornithine cyclodeaminase; Validated
Probab=91.99 E-value=1 Score=41.12 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCcEEEE-EecCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-TGVSSFVTVG-VRDIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~g~~~~v~~~-~~D~~~~~~~~ 176 (311)
..+++......+|+.+|||. |...+..+....+-.+|..++.+++..+...+.+.. .+ +++. ..|.. ..+
T Consensus 118 a~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~----~~~~~~~~~~-~~~-- 190 (325)
T PRK08618 118 ATKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFN----TEIYVVNSAD-EAI-- 190 (325)
T ss_pred HHHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH--
Confidence 44566555678999999997 554443333333457899999998877665555432 22 2222 22222 112
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCH
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
...|+|+...|.....+. ..|+||-.+..+..+.
T Consensus 191 ---~~aDiVi~aT~s~~p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 191 ---EEADIIVTVTNAKTPVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred ---hcCCEEEEccCCCCcchH---HhcCCCcEEEecCCCC
Confidence 358999987776655554 7889998887765543
No 420
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=91.87 E-value=0.74 Score=40.06 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=64.5
Q ss_pred HhcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCC
Q 021550 102 MYLELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPD 176 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~ 176 (311)
....+.+|++|+..|+ | .|..+..+++.. +.+++.+..+++..+.+++... .....+.....+... .....
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHL--GAEVFATVGSEEKREFLRELGG--PVDHIFSSRDLSFADGILRATGG 177 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhCC--CcceEeecCchhHHHHHHHHhCC
Confidence 4567889999999874 3 377778888886 4688888888877766654310 011111111111110 00111
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|.++-....+ .+..+.+.|+++|.++.++.
T Consensus 178 ---~~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~g~ 210 (293)
T cd05195 178 ---RGVDVVLNSLSGE--LLRASWRCLAPFGRFVEIGK 210 (293)
T ss_pred ---CCceEEEeCCCch--HHHHHHHhcccCceEEEeec
Confidence 4689887555544 68889999999999987653
No 421
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.77 E-value=2.5 Score=36.75 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=69.2
Q ss_pred hcCCCCCCEEEEEcccccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 103 YLELVPGCLVLESGTGSGSLTTSLARAVAP---TGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
.+.+..+...+|+|+|+-.-+..+...+.+ ..+.+.+|++...++...+.+...-..-.+.-+.+|.+. .+.....
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~~~~ 151 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAELPR 151 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhcccC
Confidence 344556889999999999988888877643 368899999999876554443332222126666777763 2221111
Q ss_pred CCccEE-Ee-------cCCChhhHHHHHHhcccCCcEEEEe
Q 021550 180 GLADSI-FL-------DLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 180 ~~~D~V-~~-------d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
.+--+. |+ .+.+-..++..+...|+||-++.+=
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 222222 22 1122345889999999999999873
No 422
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=91.74 E-value=1.2 Score=40.03 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=61.3
Q ss_pred CCCCCC-EEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCC
Q 021550 105 ELVPGC-LVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGL 181 (311)
Q Consensus 105 ~~~~g~-~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~ 181 (311)
.+.++. +||..|+ |. |..+..+++.. +.+++.+.-+++..+.++ ..|....+.....+.....+.. +.
T Consensus 141 ~~~~~~~~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~---~~ 211 (323)
T TIGR02823 141 GLTPEDGPVLVTGATGGVGSLAVAILSKL--GYEVVASTGKAEEEDYLK----ELGASEVIDREDLSPPGKPLEK---ER 211 (323)
T ss_pred CCCCCCceEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----hcCCcEEEccccHHHHHHHhcC---CC
Confidence 477888 9999997 54 88888888887 367777777666655554 3344221111111100001111 34
Q ss_pred ccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 182 ADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 182 ~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+|.++-..... .+..+.+.|+++|.++.++.
T Consensus 212 ~d~vld~~g~~--~~~~~~~~l~~~G~~v~~g~ 242 (323)
T TIGR02823 212 WAGAVDTVGGH--TLANVLAQLKYGGAVAACGL 242 (323)
T ss_pred ceEEEECccHH--HHHHHHHHhCCCCEEEEEcc
Confidence 89866444332 57888999999999998764
No 423
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=91.69 E-value=0.36 Score=44.44 Aligned_cols=80 Identities=14% Similarity=0.077 Sum_probs=51.3
Q ss_pred CCCCCCEEEEEcccc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELVPGCLVLESGTGS--GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
+..+|..||.+|.++ |.+++++|+..+ ...+..--+.+.++.+++ .|.+..++....|..+..... ....|
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~vvdy~~~~~~e~~kk~-~~~~~ 226 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADEVVDYKDENVVELIKKY-TGKGV 226 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcEeecCCCHHHHHHHHhh-cCCCc
Confidence 688999999998876 668888898863 355566667777777664 466554555554444322221 12679
Q ss_pred cEEEecCCC
Q 021550 183 DSIFLDLPQ 191 (311)
Q Consensus 183 D~V~~d~~~ 191 (311)
|+|+=....
T Consensus 227 DvVlD~vg~ 235 (347)
T KOG1198|consen 227 DVVLDCVGG 235 (347)
T ss_pred cEEEECCCC
Confidence 997643333
No 424
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.68 E-value=1.6 Score=38.90 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=65.8
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|+.+|.|- |.+....++.-+....+++.|.+...++.+.+ .|+.+ -...+.. .... ...|+||+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d---~~~~~~~--~~~~---~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID---ELTVAGL--AEAA---AEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc---ccccchh--hhhc---ccCCEEEEe
Confidence 5789999886 65555555554556678999998887777663 23321 1111110 0111 458999998
Q ss_pred CCC--hhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 189 LPQ--PWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 189 ~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.|- ..++++++.+.|++|..+.=...+.....+.++..
T Consensus 72 vPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~ 111 (279)
T COG0287 72 VPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKY 111 (279)
T ss_pred ccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHh
Confidence 874 34678888888999988875555555444444443
No 425
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.62 E-value=0.48 Score=37.66 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=61.7
Q ss_pred EEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec------CC-CCCCCCcCCCCcc
Q 021550 112 VLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD------IQ-GQGFPDEFSGLAD 183 (311)
Q Consensus 112 VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D------~~-~~~~~~~~~~~~D 183 (311)
|+.+|+|. |.+..+.+.. ....|..+..++ .++..++ .+ +.+...+ .. ....+......+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~----~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKE----QG----LTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHH----HC----EEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhh----ee----EEEEecccceecccccccCcchhccCCCc
Confidence 57788887 6655555544 357899999877 5554333 23 2222111 00 0001100116799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+||+... +..++++.+.+.+.++..++++.......+.+.+.+
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 9998765 345688899999999988888766665554444444
No 426
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.56 E-value=2.3 Score=34.63 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC-CCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-QGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~~~~~D~V 185 (311)
.++.+|+-+||=+-...+.- ...+..+++.+|++...-. .+ .. .+..-|... ..++....+++|+|
T Consensus 24 ~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhhhhcCCCceEE
Confidence 45689999999875554333 2335678999999875422 22 11 345556553 23443334799999
Q ss_pred EecCCCh-hh----HHHHHHhcccCCcEEEEec
Q 021550 186 FLDLPQP-WL----AIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~~~-~~----~l~~~~~~LkpgG~lv~~~ 213 (311)
++|+|=- .+ ....+..++++++.+++..
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 9999832 12 2234444557777777543
No 427
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=91.55 E-value=0.99 Score=40.75 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=66.0
Q ss_pred HhcCCCC-----CCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 102 MYLELVP-----GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 102 ~~~~~~~-----g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
....+.+ +.+||..|+ |. |..+..+++..+ ..+|++++.+++..+.+++ .|....+... .+... .+
T Consensus 138 ~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~-~i 210 (336)
T cd08252 138 DRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRPESIAWVKE----LGADHVINHH-QDLAE-QL 210 (336)
T ss_pred HhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCChhhHHHHHh----cCCcEEEeCC-ccHHH-HH
Confidence 3455666 899999985 43 778888888863 2789999998887777643 3442211111 11111 01
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.......+|+++-..+. ...+..+.+.|+++|.++.++.
T Consensus 211 ~~~~~~~~d~vl~~~~~-~~~~~~~~~~l~~~g~~v~~g~ 249 (336)
T cd08252 211 EALGIEPVDYIFCLTDT-DQHWDAMAELIAPQGHICLIVD 249 (336)
T ss_pred HhhCCCCCCEEEEccCc-HHHHHHHHHHhcCCCEEEEecC
Confidence 11111468987754443 3478899999999999998754
No 428
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.47 E-value=2.2 Score=37.69 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=60.1
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCC-cCCCCcc
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPD-EFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~-~~~~~~D 183 (311)
+.+|.-|+ |.++.++++.+..+.+|+.++.+++.++.+.+.+...+ ..+.++..|+.+.. +.. ...+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 45666665 46888888777656789999998877666555554333 23777888886511 100 0014689
Q ss_pred EEEecCCC-----hh------------hHHHHHHhcccCCcEEEEe
Q 021550 184 SIFLDLPQ-----PW------------LAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 184 ~V~~d~~~-----~~------------~~l~~~~~~LkpgG~lv~~ 212 (311)
.+|.+... .| .+++.+.+.++.+|.++++
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 98865431 11 2355566666666766554
No 429
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.46 E-value=2.3 Score=38.30 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=54.4
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
.+|..+|+|. |......+...+....|+++|.+++.++.+++ .+... . ...+.. ..+ ...|+||+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~-~~~-----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAA-EAV-----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHH-HHh-----cCCCEEEEC
Confidence 5799999887 44332223332212489999999987776653 34321 1 111111 111 458999998
Q ss_pred CCCh--hhHHHHHHhcccCCcEEEEecC
Q 021550 189 LPQP--WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 189 ~~~~--~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.|.. ..++..+...++++..++..+.
T Consensus 74 vp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 74 VPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 8754 3456777778888887765443
No 430
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.43 E-value=4.5 Score=35.16 Aligned_cols=124 Identities=22% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCcCCCCc
Q 021550 106 LVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDEFSGLA 182 (311)
Q Consensus 106 ~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~~~~~~ 182 (311)
+.++.. |..=+||=.++..+.+. .-++..+|+.++-....++++. .+.++.+..+|-.. ..++.. +.=
T Consensus 87 lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~--erR 157 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPK--ERR 157 (279)
T ss_pred hCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCC--Ccc
Confidence 344444 77888988888777765 6799999999998888888876 23458888888653 223331 334
Q ss_pred cEEEecCCC-----hhhHHHHHHhccc--CCcEEEEecCCH--HHHHHHHHHHhh-cCceeeEEEe
Q 021550 183 DSIFLDLPQ-----PWLAIPSAKKMLK--QDGILCSFSPCI--EQVQRSCESLRL-NFTDIRTFEI 238 (311)
Q Consensus 183 D~V~~d~~~-----~~~~l~~~~~~Lk--pgG~lv~~~~~~--~~~~~~~~~l~~-~f~~~~~~e~ 238 (311)
-+|++|+|- ...+++.+.+.++ ++|..+++-|.. .++.++.+.|+. +...+-..|.
T Consensus 158 glVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL 223 (279)
T COG2961 158 GLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIEL 223 (279)
T ss_pred eEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEE
Confidence 578889882 2234555555554 678877776754 567777777776 5555444444
No 431
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=91.35 E-value=0.42 Score=40.58 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=52.7
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
.|+..++.-..+-|.+||.|+|+.+..+..+ +..++..+|.+..++.-.+...+.. +....+++.|+..
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 3667777777789999999999999999987 4678999999988877766554432 2347777777754
No 432
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.27 E-value=3.9 Score=36.22 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=64.0
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
..+...++.+|+..|+. .|..+..+++.. +.+++.++.+++..+.+++ .|... + +.. .. .+..
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~-~-~~~--~~--~~~~--- 190 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALA--GAHVVAVVGSPARAEGLRE----LGAAE-V-VVG--GS--ELSG--- 190 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE-E-Eec--cc--cccC---
Confidence 33444568999999983 377888888886 4689999888887777754 34332 1 111 11 1222
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|+++.++.
T Consensus 191 ~~~d~vl~~~g~~--~~~~~~~~l~~~G~~v~~g~ 223 (305)
T cd08270 191 APVDLVVDSVGGP--QLARALELLAPGGTVVSVGS 223 (305)
T ss_pred CCceEEEECCCcH--HHHHHHHHhcCCCEEEEEec
Confidence 4689977544432 67889999999999998753
No 433
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.25 E-value=2.6 Score=37.49 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCc
Q 021550 105 ELVPGCLVLESGT-G-SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLA 182 (311)
Q Consensus 105 ~~~~g~~VLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~ 182 (311)
.+.++.+|+..|+ | .|..+..+++.. +.++++++.+ +..+.++ ..+....+.....+........ ..+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~--g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~---~~~ 209 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKAL--GAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGG---EKY 209 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCC---CCC
Confidence 4788999999997 3 377888888886 4688888754 5444443 3444221111111110001121 469
Q ss_pred cEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 183 DSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 183 D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
|+|+-........+......|+++|.++.+..
T Consensus 210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVGG 241 (319)
T ss_pred cEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence 99886544222222233334999999997754
No 434
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.22 E-value=1.6 Score=42.90 Aligned_cols=98 Identities=16% Similarity=0.156 Sum_probs=62.8
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
++|+.+|+|. |......++. .+..++.+|.+++.++.+++ .+ .....+|..+.. +.+..-+.+|.++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5788888887 5544444333 24689999999998887764 23 678899998622 22111157898887
Q ss_pred cCCChhh--HHHHHHhcccCCcEEEEecCCHH
Q 021550 188 DLPQPWL--AIPSAKKMLKQDGILCSFSPCIE 217 (311)
Q Consensus 188 d~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~ 217 (311)
..++..+ .+-.+.+...|...++.-....+
T Consensus 488 ~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~ 519 (558)
T PRK10669 488 TIPNGYEAGEIVASAREKRPDIEIIARAHYDD 519 (558)
T ss_pred EcCChHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 6665443 23334455678878887665543
No 435
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.19 E-value=0.25 Score=44.65 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=67.1
Q ss_pred EEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 111 LVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 111 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
+++|+.||.|++.+.+.+. +-..+.++|+++.+.+.-+.|+. ....+|+.+....... ..+|+++..+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~-~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP-KDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH-HT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc-ccceEEEeccC
Confidence 6899999999999888776 34578899999999988888764 5667888752211111 14899887666
Q ss_pred Ch------------------hhHHHHHHhcccCCcEEEEecCCH------HHHHHHHHHHhh
Q 021550 191 QP------------------WLAIPSAKKMLKQDGILCSFSPCI------EQVQRSCESLRL 228 (311)
Q Consensus 191 ~~------------------~~~l~~~~~~LkpgG~lv~~~~~~------~~~~~~~~~l~~ 228 (311)
+. ...+-.+.+.++|.-.++=-++.. ..+..+.+.|.+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEE 132 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHH
T ss_pred CceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccc
Confidence 33 112344556678866555434322 346677777766
No 436
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.12 E-value=0.17 Score=37.95 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCH
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHE 143 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~ 143 (311)
+....+|+|||+|.+...|.+. +..=+|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4557999999999999877765 46677888754
No 437
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.96 E-value=3.1 Score=35.43 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
++++||..|+++ .++..+++.+ ..+.+|++++.+++..+.+.+.....+ .+.+...|+.+.. + .. ...
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999864 4444444433 235689999998877665544443322 3777888887411 1 00 001
Q ss_pred CCccEEEecCCCh----------------------hhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQP----------------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~----------------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|.++.+.... ...++.+.+.++.+|.+++.+.
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3568887654311 1235666677778888887654
No 438
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.88 E-value=3.4 Score=36.38 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEcccccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC-
Q 021550 105 ELVPGCLVLESGTGSGSLTTSLARAVA----PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS- 179 (311)
Q Consensus 105 ~~~~g~~VLdiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~- 179 (311)
-+.+...++|+|||.|.++.+++..+. +...++.+|........=. .+........+.-+..|+.+..+.....
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~l~~~~~~ 93 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLDLSKLPEL 93 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccchhhcccc
Confidence 356777999999999999999999873 3468899998665443222 2222221112555566666533321110
Q ss_pred --CCccEEEe----cCCChhhHHHHHHhccc-------CCcEEEE
Q 021550 180 --GLADSIFL----DLPQPWLAIPSAKKMLK-------QDGILCS 211 (311)
Q Consensus 180 --~~~D~V~~----d~~~~~~~l~~~~~~Lk-------pgG~lv~ 211 (311)
..-.+|.+ .......+|+.+.+..+ ..|.++.
T Consensus 94 ~~~~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA 138 (259)
T PF05206_consen 94 QNDEKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIA 138 (259)
T ss_pred cCCCCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEE
Confidence 11223332 33344446666666554 4566654
No 439
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=90.83 E-value=0.51 Score=43.01 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=60.9
Q ss_pred CCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
.++++||..|++ .|..+..+++..+ .+++++. +++..+.++ ..|....+.....+.. ..+.....+.+|+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G--~~v~~~~-~~~~~~~~~----~~g~~~v~~~~~~~~~-~~l~~~~~~~~d~ 224 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAG--YKVITTA-SPKNFDLVK----SLGADAVFDYHDPDVV-EDIRAATGGKLRY 224 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcC--CeEEEEE-CcccHHHHH----hcCCCEEEECCCchHH-HHHHHhcCCCeeE
Confidence 688999999963 3888888998863 5777765 556666554 2454321221111111 1111111256898
Q ss_pred EEecCCChhhHHHHHHhcccC--CcEEEEecCC
Q 021550 185 IFLDLPQPWLAIPSAKKMLKQ--DGILCSFSPC 215 (311)
Q Consensus 185 V~~d~~~~~~~l~~~~~~Lkp--gG~lv~~~~~ 215 (311)
|+-.... ...+..+.+.|++ +|.++.+...
T Consensus 225 vl~~~g~-~~~~~~~~~~l~~~~~g~~v~~g~~ 256 (339)
T cd08249 225 ALDCIST-PESAQLCAEALGRSGGGKLVSLLPV 256 (339)
T ss_pred EEEeecc-chHHHHHHHHHhccCCCEEEEecCC
Confidence 7743332 2478889999999 9999887543
No 440
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.82 E-value=1.3 Score=40.30 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
..+++......++..+|||. +..-+..+..+.+-.+|..++.+++..+...+.+...++ .+... +.. ...
T Consensus 119 a~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~----~v~~~~~~~-~av--- 190 (315)
T PRK06823 119 VARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGF----AVNTTLDAA-EVA--- 190 (315)
T ss_pred HHHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCC----cEEEECCHH-HHh---
Confidence 44566556678999999998 555555555555678999999999988776666654332 23222 222 222
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecCCHHHHHHHH
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSC 223 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 223 (311)
...|+|+...+....++. .+.|+||-.+..++.+.....++-
T Consensus 191 --~~ADIV~taT~s~~P~~~--~~~l~~G~hi~~iGs~~p~~~Eld 232 (315)
T PRK06823 191 --HAANLIVTTTPSREPLLQ--AEDIQPGTHITAVGADSPGKQELD 232 (315)
T ss_pred --cCCCEEEEecCCCCceeC--HHHcCCCcEEEecCCCCcccccCC
Confidence 458999876655444553 246899888887765544444433
No 441
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.59 E-value=0.74 Score=42.83 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
++.+|+.+|+|. |..++..+..++ .+|+.+|.+++.++.+...+ +.. +.....+. ..+.+.. ..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~~--v~~~~~~~--~~l~~~l-~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GGR--IHTRYSNA--YEIEDAV-KRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cce--eEeccCCH--HHHHHHH-ccCCEEE
Confidence 456799999996 888888888863 58999999988766654432 211 21111111 0111111 3589988
Q ss_pred ecCC-----ChhhHHHHHHhcccCCcEEEEe
Q 021550 187 LDLP-----QPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~~-----~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
...+ .|.-+-....+.++|++.++-.
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 6542 1222336777788999887754
No 442
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.58 E-value=0.49 Score=41.42 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCEEEEEcccccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHh
Q 021550 109 GCLVLESGTGSGSLTTSLARAVAP-------TGHVYTFDFHEQRAASAREDFER 155 (311)
Q Consensus 109 g~~VLdiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~ 155 (311)
.-+|+|+|+|+|.++..+++.+.. ..+++.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999999988753 25899999999998888877654
No 443
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.52 E-value=1.1 Score=40.07 Aligned_cols=96 Identities=14% Similarity=0.213 Sum_probs=57.2
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..+++. +..|+.+|.+++.++.+.++.... +. . .++.+. .|..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 76 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK- 76 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH-
Confidence 3688899986 44 33333333 468999999999998877643211 10 0 011111 1221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCC
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
..+ ...|+||...|+.. .++.++.+.++++..+++-+.+
T Consensus 77 ~~~-----~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 77 AAV-----ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred Hhh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 111 45799998888765 3466677888888777654444
No 444
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.45 E-value=2.6 Score=42.11 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEE
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIF 186 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~ 186 (311)
..+|+.+|+|. |......+.. .+-.++.+|.+++.++.+++ .| ..+..+|..+.. +....-+.+|.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 36899999997 7666555554 24689999999999988864 23 567889988622 2211114688888
Q ss_pred ecCCChhhH--HHHHHhcccCCcEEEEe
Q 021550 187 LDLPQPWLA--IPSAKKMLKQDGILCSF 212 (311)
Q Consensus 187 ~d~~~~~~~--l~~~~~~LkpgG~lv~~ 212 (311)
+..+++... +-...+.+.|.-.+++-
T Consensus 470 v~~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 470 NAIDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 777665532 22344555676666653
No 445
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.43 E-value=2.3 Score=35.17 Aligned_cols=105 Identities=21% Similarity=0.287 Sum_probs=60.8
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh-------cC-CC--------CcEEEEEecCCCCC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFER-------TG-VS--------SFVTVGVRDIQGQG 173 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-------~g-~~--------~~v~~~~~D~~~~~ 173 (311)
+|..+|+|+ |.-...++.. .+..|+.+|.+++.++.+++.+.. .+ +. .++.+ ..|+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~--- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE--- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG---
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH---
Confidence 478899998 5433333333 268999999999999888876654 11 11 12332 23332
Q ss_pred CCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 174 FPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 174 ~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+. ...|+|+-..++.. +++.++.+.+.|+..|..-+.+.. ..++...+
T Consensus 75 --~~--~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~-i~~la~~~ 126 (180)
T PF02737_consen 75 --EA--VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLS-ISELAAAL 126 (180)
T ss_dssp --GG--CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS--HHHHHTTS
T ss_pred --HH--hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCC-HHHHHhcc
Confidence 11 35899997777554 578888889999999886555433 44444444
No 446
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=90.37 E-value=1.3 Score=39.61 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=62.6
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc-CC
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE-FS 179 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~-~~ 179 (311)
...+.++.+||..|++ .|..+..+++.. +.+++.+..+++..+.+++ .|.+..+.....+... .+... ..
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-~~~~~~~~ 205 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRRDEQVEELKA----LGADEVIDSSPEDLAQ-RVKEATGG 205 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecChHHHHHHHh----cCCCEEecccchhHHH-HHHHHhcC
Confidence 3456889999999873 477888888886 4678888877776666642 3543212211111110 01100 11
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+|+-..... .+..+.+.|+++|.++.+.
T Consensus 206 ~~~d~vl~~~g~~--~~~~~~~~l~~~g~~v~~g 237 (323)
T cd05282 206 AGARLALDAVGGE--SATRLARSLRPGGTLVNYG 237 (323)
T ss_pred CCceEEEECCCCH--HHHHHHHhhCCCCEEEEEc
Confidence 4689987544443 3467788999999998654
No 447
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.12 E-value=0.99 Score=36.11 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=32.4
Q ss_pred EEccccc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHhcCCCCcEEEEE
Q 021550 114 ESGTGSG--SLTTSLA-RAVAPTGHVYTFDFHEQRAASARED--FERTGVSSFVTVGV 166 (311)
Q Consensus 114 diG~G~G--~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~g~~~~v~~~~ 166 (311)
|+|+..| ..+..++ +..++.++|+++|.++..++..+++ +........+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 7999999 6555554 3456789999999999999999988 55443322244444
No 448
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.10 E-value=2.3 Score=39.63 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=64.2
Q ss_pred HHHHhcCCC-CCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCc
Q 021550 99 FVIMYLELV-PGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDE 177 (311)
Q Consensus 99 ~i~~~~~~~-~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~ 177 (311)
++++.+.-. ....||.++-.-|.+++.++.. ++ +.+--|--.-...+.|+..++++.. .+...+.. ..++
T Consensus 34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~----~~~~ds~~~~~~~~~n~~~n~~~~~-~~~~~~~~-~~~~-- 104 (378)
T PRK15001 34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KP----YSIGDSYISELATRENLRLNGIDES-SVKFLDST-ADYP-- 104 (378)
T ss_pred HHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CC----CeeehHHHHHHHHHHHHHHcCCCcc-cceeeccc-cccc--
Confidence 455554432 2238999999999999999853 22 2221112233455678888887541 12233333 3344
Q ss_pred CCCCccEEEecCCChhh----HHHHHHhcccCCcEEEE
Q 021550 178 FSGLADSIFLDLPQPWL----AIPSAKKMLKQDGILCS 211 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~----~l~~~~~~LkpgG~lv~ 211 (311)
+.+|+|++-+|-... .+..+...|.||+.+++
T Consensus 105 --~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 105 --QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred --CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 569999998886544 45667779999999875
No 449
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=90.06 E-value=3.3 Score=37.18 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=61.8
Q ss_pred HhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++++|+..|+ |. |..+..+++.. +.+|+.+.. +...+.+++ .|... +.....+........
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--g~~v~~~~~-~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~--- 201 (331)
T cd08273 133 RAAKVLTGQRVLIHGASGGVGQALLELALLA--GAEVYGTAS-ERNHAALRE----LGATP-IDYRTKDWLPAMLTP--- 201 (331)
T ss_pred HhcCCCCCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeC-HHHHHHHHH----cCCeE-EcCCCcchhhhhccC---
Confidence 3457889999999996 43 77778888875 367888775 666555543 34211 111111111111111
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+.+|+++-..... .+..+.+.|+++|.++.++.
T Consensus 202 ~~~d~vl~~~~~~--~~~~~~~~l~~~g~~v~~g~ 234 (331)
T cd08273 202 GGVDVVFDGVGGE--SYEESYAALAPGGTLVCYGG 234 (331)
T ss_pred CCceEEEECCchH--HHHHHHHHhcCCCEEEEEcc
Confidence 4689877544443 37888999999999987754
No 450
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.02 E-value=0.63 Score=44.34 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=58.4
Q ss_pred CEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 110 CLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQ----RAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 110 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~----~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
..|+|+.+|.|+++++|... .|..+..-+. .+...- ..|+-. .-.|.+ +.|+. ....||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIy----dRGLIG----~yhDWC-E~fsT-YPRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIY----DRGLIG----VYHDWC-EAFST-YPRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhh----hcccch----hccchh-hccCC-CCcchhhe
Confidence 37999999999999888654 2555444332 222221 224321 223444 23321 12689987
Q ss_pred EecC--------CChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHh
Q 021550 186 FLDL--------PQPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLR 227 (311)
Q Consensus 186 ~~d~--------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 227 (311)
-.+. -....++-++-++|+|+|.+++- ...+-+.++...+.
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~ 480 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAK 480 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHH
Confidence 5431 13346788999999999998853 33444444444443
No 451
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.98 E-value=0.96 Score=37.69 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=48.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH------------HHhcCCCCcEEEEEecCCCCCCCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARED------------FERTGVSSFVTVGVRDIQGQGFPD 176 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~------------~~~~g~~~~v~~~~~D~~~~~~~~ 176 (311)
++|-.+|.|- |..++.++... +.+|+++|++++.++..++- +.+.....++.+. .|.. ...
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~-~ai-- 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE-EAI-- 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH-HHH--
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh-hhh--
Confidence 3678888887 54443333332 57999999999988776531 0000001112221 1211 001
Q ss_pred cCCCCccEEEecCCCh------------hhHHHHHHhcccCCcEEEEecC
Q 021550 177 EFSGLADSIFLDLPQP------------WLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~------------~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
...|++|+..|.| ..+++.+.+.|+++-.+++-+.
T Consensus 75 ---~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 75 ---KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp ---HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred ---hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 3579998877644 3567888888889776665443
No 452
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=89.96 E-value=0.21 Score=38.71 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCCCCcCCCCccEEEecCCCh--------hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh-cCc
Q 021550 162 VTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--------WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL-NFT 231 (311)
Q Consensus 162 v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~--------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~-~f~ 231 (311)
+++..+|+.+ .++. ....+|++++|.-.| .+++..+.+.++|||.++.|+.. ..+...|.+ ||.
T Consensus 33 L~L~~gDa~~-~l~~-l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a----~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 33 LTLWFGDARE-MLPQ-LDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA----GAVRRALQQAGFE 105 (124)
T ss_dssp EEEEES-HHH-HHHH-B-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B----HHHHHHHHHCTEE
T ss_pred EEEEEcHHHH-HHHh-CcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech----HHHHHHHHHcCCE
Confidence 5667778753 2221 116799999986433 26899999999999999988764 335666666 775
No 453
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=89.86 E-value=1.8 Score=39.34 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=56.3
Q ss_pred CCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 108 PGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 108 ~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
+|.+||..|. |. |..+..+++.++ .+|+++..+ +..+.++ ..+....+.....+.. ..+.. ...+|++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~-~~l~~--~~~vd~v 231 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVK----SLGADDVIDYNNEDFE-EELTE--RGKFDVI 231 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHH----HhCCceEEECCChhHH-HHHHh--cCCCCEE
Confidence 4999999984 44 778888888863 567776543 3333333 3344221211111111 11111 1468998
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
+-..... .+..+.+.|+++|.++.+.
T Consensus 232 i~~~g~~--~~~~~~~~l~~~G~~v~~g 257 (350)
T cd08248 232 LDTVGGD--TEKWALKLLKKGGTYVTLV 257 (350)
T ss_pred EECCChH--HHHHHHHHhccCCEEEEec
Confidence 8655543 7888999999999999764
No 454
>PRK08324 short chain dehydrogenase; Validated
Probab=89.83 E-value=2.8 Score=42.32 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCc--CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDE--FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~--~~ 179 (311)
+|++||..|+++ .++..+++.+ ..+.+|+.++.+++.++.+.+.+... ..+.++..|+.+.. +... ..
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 578899998643 3333333322 12468999999988776665544322 23778888886511 1100 01
Q ss_pred CCccEEEecCCC------------------------hhhHHHHHHhcccC---CcEEEEecC
Q 021550 180 GLADSIFLDLPQ------------------------PWLAIPSAKKMLKQ---DGILCSFSP 214 (311)
Q Consensus 180 ~~~D~V~~d~~~------------------------~~~~l~~~~~~Lkp---gG~lv~~~~ 214 (311)
+.+|+||.+... ...+++.+.+.++. +|.+++++.
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 468998865431 22345666777766 688887654
No 455
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.76 E-value=1.7 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCC
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFH 142 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~ 142 (311)
...+||.+|||. |...+..+.+. +-++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 457999999997 76655555554 35789988876
No 456
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=89.72 E-value=0.31 Score=41.30 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=64.5
Q ss_pred cccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC--
Q 021550 94 IADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG-- 171 (311)
Q Consensus 94 ~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~-- 171 (311)
|-.+...++.+...+|...+|.--|.|+.+..+++.- +..++++.|.+|-+.+.|+....+.- ..++..+.+.+..
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~-~~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELM-HPTLKAVLGNFSYIK 106 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhc-chhHHHHHhhhHHHH
Confidence 4444557888999999999999999999999998874 78899999999988888776543211 1112222222211
Q ss_pred -----CCCCCcCCCCccEEEecCCCh
Q 021550 172 -----QGFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 172 -----~~~~~~~~~~~D~V~~d~~~~ 192 (311)
..+.+ .++|.|++|..+.
T Consensus 107 ~l~~~~gl~~---~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 107 SLIADTGLLD---VGVDGILMDLGCS 129 (303)
T ss_pred HHHHHhCCCc---CCcceEEeecCcc
Confidence 22333 6889988776543
No 457
>PRK07589 ornithine cyclodeaminase; Validated
Probab=89.63 E-value=1.5 Score=40.29 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCCc
Q 021550 100 VIMYLELVPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPDE 177 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~~ 177 (311)
..+++......+++.+|||. +..-+.++..+.+-.+|+.++.+++..+...+.+...+ +.+... |.. ...
T Consensus 120 a~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~----~~v~~~~~~~-~av--- 191 (346)
T PRK07589 120 AAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG----LRIVACRSVA-EAV--- 191 (346)
T ss_pred HHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC----CcEEEeCCHH-HHH---
Confidence 44556555567899999998 55544444445567899999999998777666665433 333322 222 222
Q ss_pred CCCCccEEEecCCChh--hHHHHHHhcccCCcEEEEecCCHHHHHHH
Q 021550 178 FSGLADSIFLDLPQPW--LAIPSAKKMLKQDGILCSFSPCIEQVQRS 222 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 222 (311)
...|+|+...+... .++.. +.|+||-.+..+..+.....++
T Consensus 192 --~~ADIIvtaT~S~~~~Pvl~~--~~lkpG~hV~aIGs~~p~~~El 234 (346)
T PRK07589 192 --EGADIITTVTADKTNATILTD--DMVEPGMHINAVGGDCPGKTEL 234 (346)
T ss_pred --hcCCEEEEecCCCCCCceecH--HHcCCCcEEEecCCCCCCcccC
Confidence 35899987554322 23332 4689999888766544333333
No 458
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.60 E-value=2.4 Score=38.29 Aligned_cols=106 Identities=18% Similarity=0.106 Sum_probs=59.9
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC----CcEEEEEecCCCCCCCCcCCCCcc
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS----SFVTVGVRDIQGQGFPDEFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~v~~~~~D~~~~~~~~~~~~~~D 183 (311)
.+|+.+|+|. |. ++..|++. +..|+.++.+++.++..++. .|+. ........... .. +. .+.+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~-~~--~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TA-DA--AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-Cc-cc--ccccC
Confidence 4799999998 55 44455443 46799999887666555432 1221 00000000010 01 11 15799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCES 225 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 225 (311)
+||+..- +...+++.+...+.++..++...--......+.+.
T Consensus 73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~ 116 (305)
T PRK05708 73 RLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAAR 116 (305)
T ss_pred EEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHh
Confidence 9987653 34567888999999999887654333333333333
No 459
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=89.54 E-value=1.8 Score=39.73 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=42.2
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHhc
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAV---AP----TGHVYTFDFHEQRAASAREDFERT 156 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~---~~----~~~v~~vD~~~~~~~~a~~~~~~~ 156 (311)
+.......-.++|+|+|.|.++..+++.+ .| ..+++.+|+|++..+.-+++++..
T Consensus 71 q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 71 QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34444445689999999999999888765 22 578999999999888777776654
No 460
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=89.45 E-value=1.9 Score=38.92 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred HhcCCCC-----CCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q 021550 102 MYLELVP-----GCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF 174 (311)
Q Consensus 102 ~~~~~~~-----g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 174 (311)
..+++.+ +.+||..|+. .|..+..+++.+. +.+|+++..+++..+.+++ .|.+..+.. ..+.. ..+
T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~-~~i 209 (336)
T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLK-AQL 209 (336)
T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHH-HHH
Confidence 4455666 8999999853 3777778888752 4689999888877666643 454321111 11111 111
Q ss_pred CCcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 175 PDEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 175 ~~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
.....+.+|+|+ +.......+..+.+.|+++|+++.+.
T Consensus 210 ~~~~~~~vd~vl-~~~~~~~~~~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 210 EKLGLEAVSYVF-SLTHTDQHFKEIVELLAPQGRFALID 247 (336)
T ss_pred HHhcCCCCCEEE-EcCCcHHHHHHHHHHhccCCEEEEEc
Confidence 111114689877 43222346788899999999998763
No 461
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.43 E-value=0.92 Score=41.70 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 101 IMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
-...+..+-+.|+|+|.|.|+++..++-.. +-.|+++|-+....+.|++
T Consensus 146 Ssi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 146 SSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 334455666899999999999999988775 6899999999776666654
No 462
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.31 E-value=1.5 Score=39.41 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred CCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEe
Q 021550 109 GCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFL 187 (311)
Q Consensus 109 g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~ 187 (311)
..+|..+|.|. |..+..+|-.+ ++.|+.+|+|.++++.....+. .++......... +.+.. ...|+||-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~--iee~v-~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSN--IEEAV-KKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHH--HHHHh-hhccEEEE
Confidence 35788899887 88888887765 6899999999999887765432 225554433322 22110 35788763
Q ss_pred -----cCCChhhHHHHHHhcccCCcEEEE
Q 021550 188 -----DLPQPWLAIPSAKKMLKQDGILCS 211 (311)
Q Consensus 188 -----d~~~~~~~l~~~~~~LkpgG~lv~ 211 (311)
....|....+++.+.|+||+.++=
T Consensus 238 aVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 223666788999999999999873
No 463
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.24 E-value=4.4 Score=32.09 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCCEEEEEcccccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGSGSLTTSLARAVA--PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
..+.+|+.+|+|. .+..+++.+. +...|+.+|.+++..+...+.+.... +.....|..+ .. ..+|+
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~-----~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEE-LL-----AEADL 84 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhh-cc-----ccCCE
Confidence 4568999999864 3333333221 13579999999887665444332211 1111122221 11 56899
Q ss_pred EEecCCChhh---HHHHHHhcccCCcEEEEecCCHHHHHHHHHHHhh
Q 021550 185 IFLDLPQPWL---AIPSAKKMLKQDGILCSFSPCIEQVQRSCESLRL 228 (311)
Q Consensus 185 V~~d~~~~~~---~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~ 228 (311)
|+...|.... ........++++..++-.+..... ..+.+.+++
T Consensus 85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~-~~l~~~~~~ 130 (155)
T cd01065 85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLE-TPLLKEARA 130 (155)
T ss_pred EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCC-CHHHHHHHH
Confidence 9986654321 111112335677666543332221 145555544
No 464
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.87 E-value=3.3 Score=36.91 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=56.6
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc--------CCC---------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT--------GVS---------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------g~~---------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |.-....+.. .+..|+.+|.+++.++.+++++... ... .++.+ ..|..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLA- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHH-
Confidence 4788999987 4322222222 2468999999999888887654211 110 11221 12221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecC
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+ ...|+||...|... .++..+.+.++++..|+..++
T Consensus 80 ~a~-----~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 80 EAV-----KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred HHh-----cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcc
Confidence 111 45799999888653 456777777777776654433
No 465
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=88.79 E-value=1.8 Score=32.69 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=65.4
Q ss_pred EEEEEccccc-HHHHHHHHHhCCCcEEEE-EeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGSG-SLTTSLARAVAPTGHVYT-FDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~G-~~~~~la~~~~~~~~v~~-vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|.-+|+|.. ..-...+....+...+.+ +|.+++..+.+.+ ..+. . ...|.. ..+.. ..+|+|++.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~~----~-~~~~~~-~ll~~---~~~D~V~I~ 69 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYGI----P-VYTDLE-ELLAD---EDVDAVIIA 69 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTTS----E-EESSHH-HHHHH---TTESEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhcc----c-chhHHH-HHHHh---hcCCEEEEe
Confidence 6888999874 333323334335667664 7999887776543 3342 2 333443 22222 469999988
Q ss_pred CCChhhHHHHHHhcccCCcEEEEecC---CHHHHHHHHHHHhh
Q 021550 189 LPQPWLAIPSAKKMLKQDGILCSFSP---CIEQVQRSCESLRL 228 (311)
Q Consensus 189 ~~~~~~~l~~~~~~LkpgG~lv~~~~---~~~~~~~~~~~l~~ 228 (311)
.|... -.+.+...|+.|-.+++--| +.++..++.+..++
T Consensus 70 tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 70 TPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp SSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 77643 56777778888888887544 55666666666655
No 466
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.75 E-value=3.5 Score=33.93 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=43.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH------------------HHHHHHHHHHHhcCCCCcEEEEEecCCC
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE------------------QRAASAREDFERTGVSSFVTVGVRDIQG 171 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~g~~~~v~~~~~D~~~ 171 (311)
+|+.+|||. |...+..+.+. +-++++.+|.+. ...+.+++++.+.+..-.+......+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 488999996 66554444443 457788887764 3345555555554433224444444432
Q ss_pred CCCCCcCCCCccEEEecCCCh
Q 021550 172 QGFPDEFSGLADSIFLDLPQP 192 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~ 192 (311)
....+ .-..+|+||.....+
T Consensus 80 ~~~~~-~l~~~DlVi~~~d~~ 99 (174)
T cd01487 80 NNLEG-LFGDCDIVVEAFDNA 99 (174)
T ss_pred hhHHH-HhcCCCEEEECCCCH
Confidence 11111 114689988654433
No 467
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.74 E-value=1.9 Score=38.35 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCC
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSG 180 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~ 180 (311)
...+.++.+|+..|+. .|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+............
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAA--GATVIATTRTSEKRDALLA----LGAAHVIVTDEEDLVAEVLRITGGK 212 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHhCCC
Confidence 4567788999999873 366666677764 4788888888877666542 3432211111111100000000013
Q ss_pred CccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 181 LADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 181 ~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+|.++..... ..+..+.+.++++|.++.++.
T Consensus 213 ~~d~vi~~~~~--~~~~~~~~~l~~~g~~v~~g~ 244 (328)
T cd08268 213 GVDVVFDPVGG--PQFAKLADALAPGGTLVVYGA 244 (328)
T ss_pred CceEEEECCch--HhHHHHHHhhccCCEEEEEEe
Confidence 68998865554 357788899999999987653
No 468
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.67 E-value=9 Score=34.61 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=53.6
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |....+.+...+....++.+|++++..+ .+..............+...|.. .+ ...|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l-----~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DC-----KGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--Hh-----CCCCEEEEc
Confidence 588899987 5554444444333358999999987665 33332211111111223323321 12 457999876
Q ss_pred CCChh------------------hHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 189 LPQPW------------------LAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 189 ~~~~~------------------~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
.+.++ ++.+.+.+ ..|.|.+++.+...+.+.
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~d~~~ 123 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPVDVLT 123 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHHHHH
Confidence 54321 12233333 458898887754443333
No 469
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.66 E-value=4.1 Score=40.53 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=63.0
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~~~~~D~V~~ 187 (311)
.+|+.+|+|. |......+.. .+..++.+|.+++.++.+++ .| ..+..+|+.+.. +....-+..|.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 5788888886 5554444443 24689999999999888764 23 567889988622 22111156899888
Q ss_pred cCCChhhHH--HHHHhcccCCcEEEEecCCH
Q 021550 188 DLPQPWLAI--PSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 188 d~~~~~~~l--~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+++...+ -...+.+.|...+++-....
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 777665432 23455577888887654443
No 470
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.66 E-value=4.9 Score=35.88 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc-------CC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERT-------GV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..++.. +..|+.+|.+++.++.+.+.+... +. . .++.+. .|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-
Confidence 4788999997 43 33333333 468999999999888765543221 21 0 112221 1221
Q ss_pred CCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 172 QGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.+ ...|+|+...|+.. .++..+...++++..++..+.+.. ...+.+.+
T Consensus 80 -~~-----~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~s~la~~~ 131 (292)
T PRK07530 80 -DL-----ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS-ITRLASAT 131 (292)
T ss_pred -Hh-----cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC-HHHHHhhc
Confidence 11 46899999888643 456778888899887764333332 23444444
No 471
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=88.62 E-value=2.5 Score=37.79 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCC-CCCCCCcCCCCccEE
Q 021550 109 GCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQ-GQGFPDEFSGLADSI 185 (311)
Q Consensus 109 g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~~~~~D~V 185 (311)
+.+||..|+ |. |..+..+++.. +.+|+.++.+++..+.+++ .|.+..+.....+.. ...... +.+|+|
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~d~v 217 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKL--GYTVVALTGKEEQADYLKS----LGASEVLDREDLLDESKKPLLK---ARWAGA 217 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEEcchhHHHHHHHHhcC---CCccEE
Confidence 468999987 44 77888888886 4579999999887776643 344321111100000 011122 458987
Q ss_pred EecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 186 FLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 186 ~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
+-.... ..+..+.+.|+++|.++.++.
T Consensus 218 i~~~~~--~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 218 IDTVGG--DVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred EECCch--HHHHHHHHhhcCCCEEEEEec
Confidence 743333 378899999999999998754
No 472
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.52 E-value=3.8 Score=36.61 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=60.1
Q ss_pred CEEEEEcccc-cHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhc----------CCC---------CcEEEEEec
Q 021550 110 CLVLESGTGS-GSL-TTSLARAVAPTGHVYTFDFHEQRAASAREDFERT----------GVS---------SFVTVGVRD 168 (311)
Q Consensus 110 ~~VLdiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------g~~---------~~v~~~~~D 168 (311)
.+|..+|+|. |.. +..++.. +..|+.+|.+++.++.+++.+... +.. .++.+. .|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TS 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CC
Confidence 4789999997 543 3333333 468999999999998776543321 110 001111 11
Q ss_pred CCCCCCCCcCCCCccEEEecCCChh----hHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 169 IQGQGFPDEFSGLADSIFLDLPQPW----LAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 169 ~~~~~~~~~~~~~~D~V~~d~~~~~----~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
. ..+ ...|+||...+... .++.++.+.++++..++..+. .-...++.+.+
T Consensus 80 ~--~~~-----~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~ts-g~~~~~la~~~ 133 (291)
T PRK06035 80 Y--ESL-----SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS-GIMIAEIATAL 133 (291)
T ss_pred H--HHh-----CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCC-CCCHHHHHhhc
Confidence 1 011 45799998887663 456667777788776653322 22344444444
No 473
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.52 E-value=0.75 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred EEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCC
Q 021550 112 VLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 112 VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~ 190 (311)
|+|+.||.|+++.-+.+. +--.+.++|+++.+.+.-+.|+.. .+..+|+.+....+. ..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~--~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDI--PDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhC--CCcCEEEecCC
Confidence 689999999999888765 334567799999998888877532 233466654221111 35899886655
No 474
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=88.46 E-value=0.82 Score=41.02 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=50.7
Q ss_pred EEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC----CCcCCCCccEEEec
Q 021550 113 LESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGF----PDEFSGLADSIFLD 188 (311)
Q Consensus 113 LdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~~~~~~~~D~V~~d 188 (311)
+|||+|.-.+-..+-.+. .+-..++.|+++..+..|++|+..++....+.+++....+..+ .+.....||.+.++
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 677766533322222222 2456789999999999999999999998888888775433111 11111458998888
Q ss_pred CC
Q 021550 189 LP 190 (311)
Q Consensus 189 ~~ 190 (311)
+|
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 77
No 475
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=88.39 E-value=2.6 Score=37.05 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=64.5
Q ss_pred HHhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCC
Q 021550 101 IMYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFP 175 (311)
Q Consensus 101 ~~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~ 175 (311)
+....+.++.+||..|.. .|..+..+++.. +.++++++.+++..+.+++ .+....+.....+... ...+
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~ 186 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLK--GAEIYATASSDDKLEYLKQ----LGVPHVINYVEEDFEEEIMRLTG 186 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHcC
Confidence 346678899999886543 366777888886 4789999888877766643 4543222221112111 0112
Q ss_pred CcCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 176 DEFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
. ..+|.++-... . ..+..+.+.|+++|.++.++
T Consensus 187 ~---~~~d~v~~~~~-~-~~~~~~~~~l~~~g~~v~~~ 219 (303)
T cd08251 187 G---RGVDVVINTLS-G-EAIQKGLNCLAPGGRYVEIA 219 (303)
T ss_pred C---CCceEEEECCc-H-HHHHHHHHHhccCcEEEEEe
Confidence 1 46898764443 2 46778889999999998764
No 476
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.32 E-value=4.3 Score=36.05 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=52.5
Q ss_pred EEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEec
Q 021550 111 LVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLD 188 (311)
Q Consensus 111 ~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d 188 (311)
+|..+|+|. |. ++..+.+. +.+|+++|.+++.++.+.+. +. +.....+. ... ...|+||+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~--~~~-----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCERAIER----GL---VDEASTDL--SLL-----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHC----CC---cccccCCH--hHh-----cCCCEEEEc
Confidence 577888886 33 44444333 46899999999887776542 32 11111111 111 458999998
Q ss_pred CCChh--hHHHHHHhcccCCcEEEEecCC
Q 021550 189 LPQPW--LAIPSAKKMLKQDGILCSFSPC 215 (311)
Q Consensus 189 ~~~~~--~~l~~~~~~LkpgG~lv~~~~~ 215 (311)
.|... .+++.+...++++..+.-.+..
T Consensus 65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 65 LPIGLLLPPSEQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEeCcch
Confidence 87442 4567777778877655544433
No 477
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.21 E-value=1.7 Score=36.18 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=71.4
Q ss_pred eecccHHHHHHhcCCCCCCEEEEEcccccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEec
Q 021550 92 LYIADISFVIMYLELVPGCLVLESGTGSGSLTTSLARAV---APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRD 168 (311)
Q Consensus 92 ~~~~~~~~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D 168 (311)
-+|.|+...-+++--...+.|+|+|.--|+.++..|..+ |...+|+++|++-..++.+... .+. |.++.++
T Consensus 53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~-i~f~egs 126 (237)
T COG3510 53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPD-ILFIEGS 126 (237)
T ss_pred CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCC-eEEEeCC
Confidence 346665544444433455899999999988877776544 3347899999886654433321 333 8999988
Q ss_pred CCCCCCCC---cCCCCccEE--EecCCCh----hhHHHHHHhcccCCcEEEEecCCH
Q 021550 169 IQGQGFPD---EFSGLADSI--FLDLPQP----WLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 169 ~~~~~~~~---~~~~~~D~V--~~d~~~~----~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
..+....+ .....+--| ++|.... .+.++...++|..|-+++++....
T Consensus 127 s~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 127 STDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccc
Confidence 76521110 000222233 3454433 244666778888899999875543
No 478
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.12 E-value=6.4 Score=34.32 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-----CCCc--CC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAVA-PTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-----FPDE--FS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-----~~~~--~~ 179 (311)
++.++|..|. +|.++..+++.+. .+.+|+.++.+++.++...+.+...+ ..+.++..|+.+.. +... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678998885 4455554444332 24689999998877665554444333 23677788886411 1100 01
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4579987543
No 479
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.91 E-value=6.1 Score=35.63 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC----CCC---cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG----FPD---EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~----~~~---~~~ 179 (311)
.+.++|..|+++| ++..+++.+ ..+.+|+.+..+++..+.+.+.+....-...+.++..|+.+.. +.+ ...
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4678888887654 344444433 2357899999988877666655543322223788888987511 000 011
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 92 ~~iD~li~nA 101 (313)
T PRK05854 92 RPIHLLINNA 101 (313)
T ss_pred CCccEEEECC
Confidence 4689888643
No 480
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.89 E-value=2.2 Score=39.13 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCH---------------------HHHHHHHHHHHhcCCCCcEEEE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHE---------------------QRAASAREDFERTGVSSFVTVG 165 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~g~~~~v~~~ 165 (311)
...+||.+|||. |...+..+.+. +-++++.+|.+. ...+.|++.+.+.+..-.++..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 357899999996 66555444443 357888888763 2445566666655443335555
Q ss_pred EecCCCCCCCCcCCCCccEEEecC
Q 021550 166 VRDIQGQGFPDEFSGLADSIFLDL 189 (311)
Q Consensus 166 ~~D~~~~~~~~~~~~~~D~V~~d~ 189 (311)
..++....+.+ .-..+|+|+...
T Consensus 102 ~~~~~~~~~~~-~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEE-LVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHH-HhcCCCEEEEcC
Confidence 55554211111 114689987544
No 481
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=87.87 E-value=2.5 Score=37.33 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=62.7
Q ss_pred HhcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCC
Q 021550 102 MYLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFS 179 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~ 179 (311)
....+.++.+||..|++ .|..+..+++.. +.+++.++.+++..+.+++ .+....+.....+...........
T Consensus 133 ~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
T cd05276 133 QLGGLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEATGG 206 (323)
T ss_pred HhcCCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHhCC
Confidence 34567889999999963 366777777775 4678888888887776643 243221111111111000000001
Q ss_pred CCccEEEecCCChhhHHHHHHhcccCCcEEEEec
Q 021550 180 GLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFS 213 (311)
Q Consensus 180 ~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~ 213 (311)
..+|+++...... .+..+.+.++++|.++.+.
T Consensus 207 ~~~d~vi~~~g~~--~~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 207 RGVDVILDMVGGD--YLARNLRALAPDGRLVLIG 238 (323)
T ss_pred CCeEEEEECCchH--HHHHHHHhhccCCEEEEEe
Confidence 4689988655543 3677888899999988764
No 482
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.84 E-value=7 Score=34.69 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=61.1
Q ss_pred CEEEEEcccc-cH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-------HhcCC-C--------CcEEEEEecCCC
Q 021550 110 CLVLESGTGS-GS-LTTSLARAVAPTGHVYTFDFHEQRAASAREDF-------ERTGV-S--------SFVTVGVRDIQG 171 (311)
Q Consensus 110 ~~VLdiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~g~-~--------~~v~~~~~D~~~ 171 (311)
.+|..+|+|. |. ++..++.. +..|+.+|.+++.++.+++++ .+.+. . .++.+ ..|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence 3688899986 44 44444433 458999999999987665332 22231 1 01221 12221
Q ss_pred CCCCCcCCCCccEEEecCCCh----hhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 172 QGFPDEFSGLADSIFLDLPQP----WLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 172 ~~~~~~~~~~~D~V~~d~~~~----~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.. ...|+||...+.. ..++..+.+.++++..++..+... ....+.+.+
T Consensus 79 -~~-----~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~~la~~~ 130 (282)
T PRK05808 79 -DL-----KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SITELAAAT 130 (282)
T ss_pred -Hh-----ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHHhh
Confidence 11 4689999887642 357788888889888775433332 233444444
No 483
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=87.79 E-value=3 Score=36.93 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=62.7
Q ss_pred hcCCCCCCEEEEEccc--ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCC---CCCCCc
Q 021550 103 YLELVPGCLVLESGTG--SGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQG---QGFPDE 177 (311)
Q Consensus 103 ~~~~~~g~~VLdiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~---~~~~~~ 177 (311)
...+.++++||..|+. .|..+..+++.. +.+|+.++.+++..+.+.+ .+....+.....+... .....
T Consensus 139 ~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~- 211 (325)
T cd08253 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWA--GARVIATASSAEGAELVRQ----AGADAVFNYRAEDLADRILAATAG- 211 (325)
T ss_pred HhCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHHcCC-
Confidence 4677889999999863 266666677775 4789999988887766643 3443211111111110 00121
Q ss_pred CCCCccEEEecCCChhhHHHHHHhcccCCcEEEEecC
Q 021550 178 FSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 178 ~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
..+|+++-..... .+....+.++++|.++.++.
T Consensus 212 --~~~d~vi~~~~~~--~~~~~~~~l~~~g~~v~~~~ 244 (325)
T cd08253 212 --QGVDVIIEVLANV--NLAKDLDVLAPGGRIVVYGS 244 (325)
T ss_pred --CceEEEEECCchH--HHHHHHHhhCCCCEEEEEee
Confidence 4699988655443 45677788999999987653
No 484
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.77 E-value=7.8 Score=33.83 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC-cCCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD-EFSG 180 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~-~~~~ 180 (311)
.++++|..|+++|. +..+++.+ ..+.+|+.++.+++.++.+.+.+.... ...+.++..|+.+.. + .. ...+
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46788988876643 33333332 235789999999887776665554321 123778888887511 1 00 0014
Q ss_pred CccEEEecC
Q 021550 181 LADSIFLDL 189 (311)
Q Consensus 181 ~~D~V~~d~ 189 (311)
.+|+++.+.
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 689887653
No 485
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.74 E-value=7.2 Score=35.56 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=48.6
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-CCC------cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-FPD------EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~------~~~ 179 (311)
.+.+||..|+++ .++..+++.+ ..+.+|+.++.+++.++...+.+...+. .+.++..|+.+.. +.. ...
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 456888888654 4444444433 2246899999998887776666655443 3778888987511 110 001
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 84 g~iD~lInnA 93 (334)
T PRK07109 84 GPIDTWVNNA 93 (334)
T ss_pred CCCCEEEECC
Confidence 4689988653
No 486
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.63 E-value=1.2 Score=36.78 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSI 185 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V 185 (311)
-.|.+|..+|+|. |......++.+ +.+|+++|.+......+. ..+ + ...++. +.+ ...|+|
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~----~~~----~--~~~~l~-ell-----~~aDiv 95 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGAD----EFG----V--EYVSLD-ELL-----AQADIV 95 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHH----HTT----E--EESSHH-HHH-----HH-SEE
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhcc----ccc----c--eeeehh-hhc-----chhhhh
Confidence 3588999999998 88878888887 479999999987554111 112 2 122332 112 358999
Q ss_pred EecCCChh---hHH-HHHHhcccCCcEEEEecCC-HHHHHHHHHHHhhcC
Q 021550 186 FLDLPQPW---LAI-PSAKKMLKQDGILCSFSPC-IEQVQRSCESLRLNF 230 (311)
Q Consensus 186 ~~d~~~~~---~~l-~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~~f 230 (311)
+++.|... ..+ ......||+|.+|+-.+-. .-....+.+.|+++-
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred hhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 98887332 233 5678899999988854321 123456788887753
No 487
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.60 E-value=1.8 Score=40.38 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=38.5
Q ss_pred HHHHhcCCCCCCEEEEEcccccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 021550 99 FVIMYLELVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAASAREDF 153 (311)
Q Consensus 99 ~i~~~~~~~~g~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 153 (311)
.-++.+++.|+++||-|.+|.......++. +..+|++||+||......+-++
T Consensus 26 vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~---~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 26 VDMEALNIGPDDRVLTITSAGCNALDYLLA---GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHHHhCCCCCCeEEEEccCCchHHHHHhc---CCceEEEEeCCHHHHHHHHHHH
Confidence 456889999999999998766554444433 3589999999998776655443
No 488
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.59 E-value=13 Score=33.70 Aligned_cols=105 Identities=15% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCcEEEEE-ecCCCCCCCCcCCCCccE
Q 021550 108 PGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAA-SAREDFERTGVSSFVTVGV-RDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 108 ~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~g~~~~v~~~~-~D~~~~~~~~~~~~~~D~ 184 (311)
|..+|..+|+|. |....+.+...+-...++.+|++++.++ .+........+.....+.. +|.. .+ ...|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~-----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VT-----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--Hh-----CCCCE
Confidence 456899999987 6655555544444467999999886543 2333222221211123332 3432 12 45799
Q ss_pred EEecCCCh------------------hhHHHHHHhcccCCcEEEEecCCHHHHH
Q 021550 185 IFLDLPQP------------------WLAIPSAKKMLKQDGILCSFSPCIEQVQ 220 (311)
Q Consensus 185 V~~d~~~~------------------~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 220 (311)
|++....+ .++.+.+.+. .|.|.+++++-..+.+.
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~d~~t 127 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPVDIMT 127 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChHHHHH
Confidence 88743211 0223333333 68898887765444333
No 489
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.51 E-value=4.8 Score=37.68 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=27.1
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASARE 151 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 151 (311)
+|-.+|.|. |..+..++.. +..|+++|++++.++.+++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 577788885 5544433332 4789999999999888775
No 490
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.47 E-value=6.9 Score=33.53 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=56.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHE-QRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EF 178 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~-~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~ 178 (311)
.+.++|..|+.. .++..+++.+ ..+.+|+++..+. ...+.....+...+ ..+.+...|+.+.. + .. ..
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899888644 4555555443 2346788877654 33443333333323 23777888887511 1 00 00
Q ss_pred CCCccEEEecCCC------------------hhhHHHHHHhcccCCcEEEEecC
Q 021550 179 SGLADSIFLDLPQ------------------PWLAIPSAKKMLKQDGILCSFSP 214 (311)
Q Consensus 179 ~~~~D~V~~d~~~------------------~~~~l~~~~~~LkpgG~lv~~~~ 214 (311)
.+.+|+||.+... +..+++.+.+.++.+|.+++.+.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 1357888765421 12456677777766777776543
No 491
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.27 E-value=11 Score=35.53 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred CEEEEEcccc-cHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC------------CCCCCC
Q 021550 110 CLVLESGTGS-GSLT-TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI------------QGQGFP 175 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~------------~~~~~~ 175 (311)
.+|..+|.|. |... ..|++. +.+|+++|++++.++..+. |... +...+. ....-.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~~~~v~~l~~-----g~~~---~~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR---QKQVIGVDINQHAVDTINR-----GEIH---IVEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC---CCEEEEEeCCHHHHHHHHC-----CCCC---cCCCCHHHHHHHHhhcCceeeecc
Confidence 4788899986 3333 223333 4789999999998775321 1110 000000 000000
Q ss_pred CcCCCCccEEEecCCCh---------h---hHHHHHHhcccCCcEEEEecCC-HHHHHHHHHHHhh
Q 021550 176 DEFSGLADSIFLDLPQP---------W---LAIPSAKKMLKQDGILCSFSPC-IEQVQRSCESLRL 228 (311)
Q Consensus 176 ~~~~~~~D~V~~d~~~~---------~---~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~l~~ 228 (311)
. ...|+||+..|.| . .+++.+.+.|++|..++..+.. .....++...+.+
T Consensus 73 ~---~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 73 P---EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred c---ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 3579999887765 1 3456677888887777655442 2344445444443
No 492
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.26 E-value=4.3 Score=39.90 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=52.5
Q ss_pred HhcCCCCCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhc-----CC--CCcEEEEEecCCCC-
Q 021550 102 MYLELVPGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERT-----GV--SSFVTVGVRDIQGQ- 172 (311)
Q Consensus 102 ~~~~~~~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~-----g~--~~~v~~~~~D~~~~- 172 (311)
..++...|.+||..|+. |.++..+++++ ..+.+|++++.+.+.++.....+... +. ...+.++.+|+.+.
T Consensus 73 ~~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 73 KELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred cccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 34566788889988864 55566655544 23568999998887765544433221 11 12378889999752
Q ss_pred CCCCcCCCCccEEEecCC
Q 021550 173 GFPDEFSGLADSIFLDLP 190 (311)
Q Consensus 173 ~~~~~~~~~~D~V~~d~~ 190 (311)
.+... -+.+|+||++..
T Consensus 152 sI~~a-LggiDiVVn~AG 168 (576)
T PLN03209 152 QIGPA-LGNASVVICCIG 168 (576)
T ss_pred HHHHH-hcCCCEEEEccc
Confidence 11111 146899887543
No 493
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=87.07 E-value=3.1 Score=37.19 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=75.2
Q ss_pred HHHhcCCCCCCEEEEEcc-cc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEe-cCCCCCCCC
Q 021550 100 VIMYLELVPGCLVLESGT-GS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVR-DIQGQGFPD 176 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~-G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-D~~~~~~~~ 176 (311)
+.+...++.|++|+.-|+ |. |.++.++|+.+ .++|++.=-|++.....+.. .|.++.++.... |... .+..
T Consensus 145 f~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~--Gc~VVGsaGS~EKv~ll~~~---~G~d~afNYK~e~~~~~-aL~r 218 (343)
T KOG1196|consen 145 FYEICSPKKGETVFVSAASGAVGQLVGQFAKLM--GCYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLSA-ALKR 218 (343)
T ss_pred HHHhcCCCCCCEEEEeeccchhHHHHHHHHHhc--CCEEEEecCChhhhhhhHhc---cCCccceeccCccCHHH-HHHH
Confidence 446677888998877665 44 89999999997 46999999999888877753 566655666655 4332 2222
Q ss_pred cCCCCccEEEecCCChhhHHHHHHhcccCCcEEEEe
Q 021550 177 EFSGLADSIFLDLPQPWLAIPSAKKMLKQDGILCSF 212 (311)
Q Consensus 177 ~~~~~~D~V~~d~~~~~~~l~~~~~~LkpgG~lv~~ 212 (311)
..++.+|+-|-|.... .++.+...|+..|++++.
T Consensus 219 ~~P~GIDiYfeNVGG~--~lDavl~nM~~~gri~~C 252 (343)
T KOG1196|consen 219 CFPEGIDIYFENVGGK--MLDAVLLNMNLHGRIAVC 252 (343)
T ss_pred hCCCcceEEEeccCcH--HHHHHHHhhhhccceEee
Confidence 2226799988777654 778888889999988864
No 494
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=87.03 E-value=12 Score=34.04 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCcEEEEEecCCCCCCCCcCCCCccE
Q 021550 107 VPGCLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFE-RTGVSSFVTVGVRDIQGQGFPDEFSGLADS 184 (311)
Q Consensus 107 ~~g~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~ 184 (311)
+.+.+|..+|+|. |....+++...+-...+..+|++++.++-...-+. .......+.+...|.. .+ ...|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~-----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DC-----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--Hh-----CCCCE
Confidence 3457999999987 66655555443333479999998876543332222 2111122444433322 12 45799
Q ss_pred EEecCCCh--------------hhHHHHHHhcc---cCCcEEEEecCCHHHHHH
Q 021550 185 IFLDLPQP--------------WLAIPSAKKML---KQDGILCSFSPCIEQVQR 221 (311)
Q Consensus 185 V~~d~~~~--------------~~~l~~~~~~L---kpgG~lv~~~~~~~~~~~ 221 (311)
|++....+ ...+.++...+ .|.|.+++++...+.+..
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~ 130 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY 130 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH
Confidence 88643221 12344443333 378888877654444333
No 495
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.84 E-value=7.3 Score=33.59 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=47.8
Q ss_pred CCCEEEEEcccccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-C----CC--cCC
Q 021550 108 PGCLVLESGTGSGSLTTSLARAV-APTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQG-F----PD--EFS 179 (311)
Q Consensus 108 ~g~~VLdiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~-~----~~--~~~ 179 (311)
.+.++|..|+++| ++..+++.+ ..+.+|+.++.+++.++...+.+...+ ..+.+...|+.+.. + .. ...
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4678999997654 333444333 225689999998887776666555443 23777888886511 1 00 001
Q ss_pred CCccEEEecC
Q 021550 180 GLADSIFLDL 189 (311)
Q Consensus 180 ~~~D~V~~d~ 189 (311)
+.+|++|.+.
T Consensus 85 g~id~lv~~a 94 (253)
T PRK05867 85 GGIDIAVCNA 94 (253)
T ss_pred CCCCEEEECC
Confidence 4689988643
No 496
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=86.84 E-value=2.5 Score=29.61 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHhcCCCCCCEEEEEcccccH-HHHHHHHHhCCCcEEEEEeCC
Q 021550 100 VIMYLELVPGCLVLESGTGSGS-LTTSLARAVAPTGHVYTFDFH 142 (311)
Q Consensus 100 i~~~~~~~~g~~VLdiG~G~G~-~~~~la~~~~~~~~v~~vD~~ 142 (311)
+-..-.+...++||.+|+-+|+ ++..++..++.++..+++-+.
T Consensus 30 vk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 30 VKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3333344445899999999997 666677777667777777553
No 497
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=86.82 E-value=2.8 Score=36.82 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=51.8
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCCCcCCCCccEEEecCCCh--hhHHHHHHh
Q 021550 124 TSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQGFPDEFSGLADSIFLDLPQP--WLAIPSAKK 201 (311)
Q Consensus 124 ~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~~~~~D~V~~d~~~~--~~~l~~~~~ 201 (311)
..|.+. ++..+|+++|.++..++.|.+ .|+.. -...+. ..+ ..+|+||+..|-. ..+++++..
T Consensus 3 ~aL~~~-g~~~~v~g~d~~~~~~~~a~~----~g~~~---~~~~~~--~~~-----~~~DlvvlavP~~~~~~~l~~~~~ 67 (258)
T PF02153_consen 3 LALRKA-GPDVEVYGYDRDPETLEAALE----LGIID---EASTDI--EAV-----EDADLVVLAVPVSAIEDVLEEIAP 67 (258)
T ss_dssp HHHHHT-TTTSEEEEE-SSHHHHHHHHH----TTSSS---EEESHH--HHG-----GCCSEEEE-S-HHHHHHHHHHHHC
T ss_pred HHHHhC-CCCeEEEEEeCCHHHHHHHHH----CCCee---eccCCH--hHh-----cCCCEEEEcCCHHHHHHHHHHhhh
Confidence 334443 557899999999999888764 35433 122221 112 3479999988743 467888899
Q ss_pred cccCCcEEEEecCCHHHHHHHHHHH
Q 021550 202 MLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 202 ~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
.+++|+.+.=.+.....+...++..
T Consensus 68 ~~~~~~iv~Dv~SvK~~~~~~~~~~ 92 (258)
T PF02153_consen 68 YLKPGAIVTDVGSVKAPIVEAMERL 92 (258)
T ss_dssp GS-TTSEEEE--S-CHHHHHHHHHH
T ss_pred hcCCCcEEEEeCCCCHHHHHHHHHh
Confidence 9999998886666655544444333
No 498
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.76 E-value=8.6 Score=34.24 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=53.3
Q ss_pred EEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCC---CcEEEEEecCCCCCCCCcCCCCccEEE
Q 021550 111 LVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVS---SFVTVGVRDIQGQGFPDEFSGLADSIF 186 (311)
Q Consensus 111 ~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---~~v~~~~~D~~~~~~~~~~~~~~D~V~ 186 (311)
+|+.+|+|. |......+... +..|+.++.+++.++..++ .++. ..... ..... ....+ . ..+|+||
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~-~~~~~-~-~~~d~vi 71 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAA-DDPAE-L-GPQDLVI 71 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCC-CChhH-c-CCCCEEE
Confidence 688999987 44333333332 3689999987776665543 2321 10100 00001 11111 1 4689999
Q ss_pred ecCCC--hhhHHHHHHhcccCCcEEEEecCCH
Q 021550 187 LDLPQ--PWLAIPSAKKMLKQDGILCSFSPCI 216 (311)
Q Consensus 187 ~d~~~--~~~~l~~~~~~LkpgG~lv~~~~~~ 216 (311)
+..+. ...+++.+...+.++..++......
T Consensus 72 la~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 72 LAVKAYQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred EecccccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 87653 3467777878887777777654433
No 499
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.74 E-value=1.6 Score=40.72 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=49.1
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecCCCC-CCCCcCCCCccEEEe
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDIQGQ-GFPDEFSGLADSIFL 187 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~~~~~D~V~~ 187 (311)
.+||.+|||. |...++.+.+- .+..|+..|.+.+.++.+..... . .++..+.|+.+. .+.+.. ..+|+||.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~~----~-~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELIG----G-KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhcc----c-cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 5799999987 66655554442 34899999999988877765432 1 388888888752 121111 34699886
Q ss_pred cCC
Q 021550 188 DLP 190 (311)
Q Consensus 188 d~~ 190 (311)
..|
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 554
No 500
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=86.73 E-value=9.4 Score=34.54 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=61.2
Q ss_pred CEEEEEcccc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEEecC----CC-CCCCCcCCCCcc
Q 021550 110 CLVLESGTGS-GSLTTSLARAVAPTGHVYTFDFHEQRAASAREDFERTGVSSFVTVGVRDI----QG-QGFPDEFSGLAD 183 (311)
Q Consensus 110 ~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~D~----~~-~~~~~~~~~~~D 183 (311)
.+|+.+|+|. |.+....+... +..+.+...++.++..++ .|+ .+...+- .. ..........+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~---g~~V~~~~R~~~~~~l~~----~GL----~i~~~~~~~~~~~~~~~~~~~~~~~D 69 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA---GHDVTLLVRSRRLEALKK----KGL----RIEDEGGNFTTPVVAATDAEALGPAD 69 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC---CCeEEEEecHHHHHHHHh----CCe----EEecCCCccccccccccChhhcCCCC
Confidence 3789999998 55444444442 245555555555555554 243 2221111 00 011111115799
Q ss_pred EEEecCC--ChhhHHHHHHhcccCCcEEEEecCCHHHHHHHHHHH
Q 021550 184 SIFLDLP--QPWLAIPSAKKMLKQDGILCSFSPCIEQVQRSCESL 226 (311)
Q Consensus 184 ~V~~d~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 226 (311)
+||+..- +..++++.+.+.+++...+++...-....+.+.+..
T Consensus 70 lviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~ 114 (307)
T COG1893 70 LVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKIL 114 (307)
T ss_pred EEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhC
Confidence 9997654 556789999999999999888766666555444433
Done!