Query 021551
Match_columns 311
No_of_seqs 72 out of 74
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10236 hypothetical protein; 100.0 4.9E-39 1.1E-43 295.5 14.3 175 59-271 7-191 (237)
2 COG4735 Uncharacterized protei 100.0 5E-31 1.1E-35 238.2 6.4 153 111-311 18-172 (211)
3 COG4735 Uncharacterized protei 98.4 2.1E-06 4.4E-11 79.0 9.0 141 132-303 1-156 (211)
4 PF13099 DUF3944: Domain of un 96.1 0.0064 1.4E-07 42.3 3.1 29 60-88 3-31 (35)
5 PF03981 Ubiq_cyt_C_chap: Ubiq 81.9 0.35 7.6E-06 40.3 -0.6 56 115-201 4-60 (141)
6 PF03250 Tropomodulin: Tropomo 76.9 3.7 8E-05 36.7 4.2 30 54-83 110-139 (147)
7 PF02173 pKID: pKID domain; I 60.7 5.7 0.00012 28.8 1.6 13 138-150 18-30 (41)
8 PF11248 DUF3046: Protein of u 43.7 65 0.0014 25.2 5.0 45 114-158 4-62 (63)
9 PF15008 DUF4518: Domain of un 42.8 1.6E+02 0.0035 28.6 8.7 91 61-181 7-97 (262)
10 cd07679 F-BAR_PACSIN2 The F-BA 38.9 35 0.00076 32.9 3.6 48 110-164 199-249 (258)
11 cd02642 R3H_encore_like R3H do 37.6 51 0.0011 24.7 3.6 45 114-158 2-49 (63)
12 PF04542 Sigma70_r2: Sigma-70 35.9 62 0.0013 22.7 3.7 33 142-177 5-37 (71)
13 cd01915 CODH Carbon monoxide d 35.4 1.3E+02 0.0029 32.4 7.5 88 143-237 109-211 (613)
14 TIGR02989 Sig-70_gvs1 RNA poly 32.9 55 0.0012 26.8 3.5 35 141-178 9-43 (159)
15 TIGR00759 aceE pyruvate dehydr 32.1 3E+02 0.0066 31.2 9.7 132 60-246 338-504 (885)
16 cd06406 PB1_P67 A PB1 domain i 31.4 37 0.00081 27.6 2.1 20 137-156 18-37 (80)
17 cd02646 R3H_G-patch R3H domain 29.7 63 0.0014 23.8 3.0 44 117-160 1-46 (58)
18 cd06134 RNaseT DEDDh 3'-5' exo 28.7 52 0.0011 29.1 2.8 33 145-177 151-188 (189)
19 PF01371 Trp_repressor: Trp re 27.6 1.1E+02 0.0023 25.1 4.1 23 64-86 8-30 (87)
20 COG4840 Uncharacterized protei 26.4 78 0.0017 25.4 3.1 24 67-90 33-56 (71)
21 PF13873 Myb_DNA-bind_5: Myb/S 26.2 1.2E+02 0.0027 22.6 4.1 44 109-153 33-76 (78)
22 PF12616 DUF3775: Protein of u 25.6 92 0.002 24.8 3.4 31 60-90 3-34 (75)
23 PRK14082 hypothetical protein; 25.1 56 0.0012 25.9 2.0 16 162-177 33-48 (65)
24 PF02836 Glyco_hydro_2_C: Glyc 22.6 64 0.0014 30.0 2.3 38 118-155 36-73 (298)
25 PF07176 DUF1400: Alpha/beta h 22.2 1.3E+02 0.0029 25.6 4.0 36 55-90 26-61 (127)
26 cd00014 CH Calponin homology d 20.4 1.7E+02 0.0037 22.3 4.0 25 142-167 63-87 (107)
27 PHA01745 hypothetical protein 20.0 47 0.001 33.0 0.9 75 68-155 210-285 (306)
No 1
>PRK10236 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-39 Score=295.53 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=146.1
Q ss_pred CChhHHHHHHhhChHHHHHHHHHhc-----CCCCCCccchhhc-cc---CCcchhHHhhchHHHHHHHHHHHHHHhhhhh
Q 021551 59 FDPELRSVLELATDSELYELERILF-----GPSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAA 129 (311)
Q Consensus 59 ~~~ELr~vLelATdeEL~~L~~ILf-----~~s~fsPLlkSi~-kr---~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAA 129 (311)
.|++| +||..||||||.+|++||+ ..|+++.|+++.. ++ +.+||. +||+.||+|||||||
T Consensus 7 ~D~DL-~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~----------~yw~~Ia~elq~fGg 75 (237)
T PRK10236 7 NDSDL-DFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR----------RNWQLIAGELQHFGG 75 (237)
T ss_pred cCccH-HHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHH----------HHHHHHHHHHHHhcc
Confidence 35555 7999999999999999999 4467777777744 55 666666 999999999999999
Q ss_pred ch-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhHHHhhhhh
Q 021551 130 DA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQ 208 (311)
Q Consensus 130 Ds-~s~LRG~gpsYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~awek~~~~~e~~sl~~~l~~ 208 (311)
|+ +|+|||+||+|||||+|||+||||||++++||++||+|||+|+|++ +|+||+++ |+++|...++
T Consensus 76 nt~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~~kms~e-E~~~L~~~l~- 142 (237)
T PRK10236 76 DSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKKMDEE-HKQEFLHAVD- 142 (237)
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHCCHH-HHHHHHHHHh-
Confidence 99 6899999999999999999999999999999999999999999999 99999999 9999999998
Q ss_pred HHHHHHhhhhcCchhhhHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhH
Q 021551 209 WKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIKKEVLKKGGQ 271 (311)
Q Consensus 209 w~~~~la~~~lg~~~lls~lLKGgsalavssi~~~l~~~la~q~al~~A~YQvAk~~l~~Gg~ 271 (311)
..+ +. ...+++.++.. ..+.+ ......++|++...|| -|+|+++++|..
T Consensus 143 ---~~l--~~--~~~~~~~ll~~--~~~~~----~~~gf~~y~l~~iv~~-~i~~~~lG~gL~ 191 (237)
T PRK10236 143 ---ARV--NE--LEELLPLLMKD--KLLAK----GVSHLLSSQLTRILRT-HAAMSVLGHGLL 191 (237)
T ss_pred ---hhc--cC--cccchHHHHHH--HHHHH----hhcchHHHHHHHHHHH-HHHHHHhhhhHH
Confidence 443 22 23356665432 23333 4667889999999999 799999988764
No 2
>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.97 E-value=5e-31 Score=238.16 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHhhhhhch-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCC
Q 021551 111 EEREDFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS 189 (311)
Q Consensus 111 ~~R~~~i~~Ie~rfrfLAADs-~s~LRG~gpsYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~a 189 (311)
.+..+|++.|.+|+|++++|+ ++.|||.|+.||+||+|+|||||++++++++|.+||++++++||++ +
T Consensus 18 ~~~~ky~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il~~-----------~ 86 (211)
T COG4735 18 IQVCKYLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQILRN-----------P 86 (211)
T ss_pred HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHHHh-----------H
Confidence 344599999999999999999 7999999999999999999999999999999999999999999999 9
Q ss_pred cccCCchhhhhHHHhhhhhHHHHHHhhhhcCchhhhHHHhccccchhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 021551 190 WENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKGGGIYTLVKIYQ-LLMRNLSGKFFLEAANYQIKKEVLKK 268 (311)
Q Consensus 190 wek~~~~~e~~sl~~~l~~w~~~~la~~~lg~~~lls~lLKGgsalavssi~~-~l~~~la~q~al~~A~YQvAk~~l~~ 268 (311)
|+||+.. +.+++ +.++.. .+.+ |..|+.+++|.||+||.++++
T Consensus 87 l~km~~~-~~~e~----------------------------------~~~l~~~~v~~-i~e~~~vl~a~~l~ak~~~~~ 130 (211)
T COG4735 87 LEKMLKG-GKAEA----------------------------------VDSLDAPNVLE-IEEQLQVLIADYLVAKKALGK 130 (211)
T ss_pred HHHHhHH-HHHHH----------------------------------HHHhcchhHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 9999887 44444 444444 4556 999999999999999999999
Q ss_pred hhHHHHHhhhhHHHHHHHHhhHHHHHhhhHhhHhHHHhhccCC
Q 021551 269 GGQLAAINLESRAALLAAKQGFAGAATKYLGLRNMVALLGPVY 311 (311)
Q Consensus 269 Gg~~aa~~~e~~~al~aAr~G~~~aAaRY~~~Rs~~~~lGP~l 311 (311)
|+..+|.++++++|+|+++|||.+.|+ ||.+||.|++.||++
T Consensus 131 ~S~qla~~l~~~~a~q~lg~Gl~~ga~-~~~~rtl~~l~GPvg 172 (211)
T COG4735 131 GSYQLAVILQNAVALQTLGQGLLRGAA-YGLVRTLFSLGGPVG 172 (211)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHhcchHH
Confidence 999999999999999999999999999 999999999999974
No 3
>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=2.1e-06 Score=79.04 Aligned_cols=141 Identities=23% Similarity=0.216 Sum_probs=103.0
Q ss_pred hhhhcCC--CccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhHHHhhhhhH
Q 021551 132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELGLSQW 209 (311)
Q Consensus 132 ~s~LRG~--gpsYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~awek~~~~~e~~sl~~~l~~w 209 (311)
.|++||+ ..+||+-++||||++++++.....|-++|.++|+|.+++ .|++.+.. +.+.|....+
T Consensus 1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d-~~~~Lk~k~~-- 66 (211)
T COG4735 1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCD-EKDKLKVKVQ-- 66 (211)
T ss_pred CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHH-HHHHHHHHHH--
Confidence 3678886 999999999999999999999999999999999999999 99999998 8888888888
Q ss_pred HHHHHhhhhcCc-------hhhhHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHhhhHHHHHhh
Q 021551 210 KVQALAAFNAGA-------VELKSMMLKGGGIYTLVKIYQLLMRNLSGKFFLEAANYQIK-----KEVLKKGGQLAAINL 277 (311)
Q Consensus 210 ~~~~la~~~lg~-------~~lls~lLKGgsalavssi~~~l~~~la~q~al~~A~YQvA-----k~~l~~Gg~~aa~~~ 277 (311)
+.++.+.+.+ +|++..++|||+ +.+..-+..++..++.. |.. .+.+++- ..+
T Consensus 67 --k~~~tt~Iee~ll~~il~~~l~km~~~~~--------~e~~~~l~~~~v~~i~e-~~~vl~a~~l~ak~~-----~~~ 130 (211)
T COG4735 67 --KELGTTEIEEPLLLQILRNPLEKMLKGGK--------AEAVDSLDAPNVLEIEE-QLQVLIADYLVAKKA-----LGK 130 (211)
T ss_pred --HhhccccccchhHHHHHHhHHHHHhHHHH--------HHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHH-----hcc
Confidence 7777777776 777777777773 45555555665555553 222 2222221 222
Q ss_pred h-hHHHHHHHHhhHHHHHhhhHhhHhH
Q 021551 278 E-SRAALLAAKQGFAGAATKYLGLRNM 303 (311)
Q Consensus 278 e-~~~al~aAr~G~~~aAaRY~~~Rs~ 303 (311)
- .++|.+.+ .-+++..++-|-+|+.
T Consensus 131 ~S~qla~~l~-~~~a~q~lg~Gl~~ga 156 (211)
T COG4735 131 GSYQLAVILQ-NAVALQTLGQGLLRGA 156 (211)
T ss_pred chHHHHHHHH-HHHHHHHHhhhhhhhh
Confidence 2 33444433 4477777787877765
No 4
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=96.08 E-value=0.0064 Score=42.29 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=24.6
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhcCCCCC
Q 021551 60 DPELRSVLELATDSELYELERILFGPSYF 88 (311)
Q Consensus 60 ~~ELr~vLelATdeEL~~L~~ILf~~s~f 88 (311)
-|+..+||..|++|||++|++||+.-+-.
T Consensus 3 ~D~DLeFL~~cs~edL~~L~~~Lt~dkdG 31 (35)
T PF13099_consen 3 YDSDLEFLAECSNEDLKDLVDILTHDKDG 31 (35)
T ss_pred cCcchHHHHHCCHHHHHHHHHHHhcCCCC
Confidence 36778999999999999999999965533
No 5
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=81.91 E-value=0.35 Score=40.26 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhhch-hhhhcCCCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccC
Q 021551 115 DFIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENS 193 (311)
Q Consensus 115 ~~i~~Ie~rfrfLAADs-~s~LRG~gpsYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~awek~ 193 (311)
.+.+.+++||+++.... +...| |+..+ -+..++|++||.++.++ .+++|
T Consensus 4 ~~~dt~~~~f~~~~lh~~l~~~R----------------Lk~~~---~~~~~~~q~l~~~~~~d-----------~~~~l 53 (141)
T PF03981_consen 4 GVPDTFAGRFQMLGLHVWLVLRR----------------LKAEG---KEGKELEQALFDKFFED-----------MDERL 53 (141)
T ss_pred CCccCHHHHHHHHHHHHHHHHHH----------------Hcccc---ccHHHHHHHHHHHHHHH-----------HHHHH
Confidence 45678999999999998 55555 77766 44699999999999999 88888
Q ss_pred CchhhhhH
Q 021551 194 EASDAQNS 201 (311)
Q Consensus 194 ~~~~e~~s 201 (311)
.+. +..+
T Consensus 54 ~~~-gv~d 60 (141)
T PF03981_consen 54 REM-GVGD 60 (141)
T ss_pred HHh-cCcc
Confidence 766 4433
No 6
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=76.94 E-value=3.7 Score=36.73 Aligned_cols=30 Identities=47% Similarity=0.566 Sum_probs=26.6
Q ss_pred CCCCCCChhHHHHHHhhChHHHHHHHHHhc
Q 021551 54 KGQGAFDPELRSVLELATDSELYELERILF 83 (311)
Q Consensus 54 ~~~~~~~~ELr~vLelATdeEL~~L~~ILf 83 (311)
.-.-..++||.++|.-|||+||.+|..||-
T Consensus 110 ee~v~ldpeleeaL~~Atd~El~dlAaILG 139 (147)
T PF03250_consen 110 EEQVTLDPELEEALSNATDAELCDLAAILG 139 (147)
T ss_pred ccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence 345678899999999999999999999984
No 7
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=60.74 E-value=5.7 Score=28.75 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.4
Q ss_pred CCccHHHHHHHHH
Q 021551 138 WRPSYRNVLLAVR 150 (311)
Q Consensus 138 ~gpsYReVLldVc 150 (311)
+|||||.||-++.
T Consensus 18 RRPSYRKIlndLs 30 (41)
T PF02173_consen 18 RRPSYRKILNDLS 30 (41)
T ss_dssp TSTHHHHHHHHHH
T ss_pred hCchHHHHHHHhc
Confidence 5999999999874
No 8
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=43.69 E-value=65 Score=25.17 Aligned_cols=45 Identities=29% Similarity=0.360 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-----hhhhhch-hhhhcCC--------CccHHHHHHHHHhhcCCCCC
Q 021551 114 EDFIASLESRF-----LFLAADA-RSTLRGW--------RPSYRNVLLAVRKNLNIPCS 158 (311)
Q Consensus 114 ~~~i~~Ie~rf-----rfLAADs-~s~LRG~--------gpsYReVLldVc~kLkV~~s 158 (311)
..||++++.+| +.++.|- .+-|-|+ |+.=|+|=..||+-++||-+
T Consensus 4 teFw~~~~~~FG~~~~~~la~dhvL~~LGgrT~~eAL~~G~dpr~VW~AlC~~~dVP~~ 62 (63)
T PF11248_consen 4 TEFWQLMEEEFGPAYGRSLARDHVLSELGGRTAAEALEAGVDPRDVWRALCDAFDVPEE 62 (63)
T ss_pred HHHHHHHHHHhCchhHHHHHHhcchhhcCCcCHHHHHHcCCCHHHHHHHHHHHcCCCCC
Confidence 47888999888 4455555 3555543 89999999999999999965
No 9
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=42.77 E-value=1.6e+02 Score=28.64 Aligned_cols=91 Identities=21% Similarity=0.351 Sum_probs=66.5
Q ss_pred hhHHHHHHhhChHHHHHHHHHhcCCCCCCccchhhcccCCcchhHHhhchHHHHHHHHHHHHHHhhhhhchhhhhcCCCc
Q 021551 61 PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRP 140 (311)
Q Consensus 61 ~ELr~vLelATdeEL~~L~~ILf~~s~fsPLlkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAADs~s~LRG~gp 140 (311)
..+|++|.+-+++||..|++..+.+- ..| ++|+.=++.| .-+-.|+..+||. +.
T Consensus 7 ~G~rdlL~~l~~~~LlaL~~TVTn~~-i~~--------------------e~~~EAi~aI----L~~s~~a~~LL~r-kk 60 (262)
T PF15008_consen 7 EGCRDLLGLLDNDDLLALADTVTNRL-IKP--------------------ESRQEAIDAI----LLYSQDAEELLRR-KK 60 (262)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhcCc-eec--------------------CCHHHHHHHH----HHhCcCHHHHHhc-cc
Confidence 45899999999999999999999886 444 2233333333 3355677888886 56
Q ss_pred cHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhcc
Q 021551 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASE 181 (311)
Q Consensus 141 sYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~ 181 (311)
-+|+||-.--..-+|.-++..+-. .+..|.++-..+.
T Consensus 61 V~RelLFkYLa~kgv~v~p~s~K~----~LI~~~l~~W~~~ 97 (262)
T PF15008_consen 61 VKRELLFKYLASKGVIVPPDSEKA----DLIQRVLQYWSSQ 97 (262)
T ss_pred ccHHHHHHHHHHcCCCCCCCccHH----HHHHHHHHHHhcc
Confidence 689999999999999988888744 4566666664433
No 10
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=38.87 E-value=35 Score=32.95 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHH---HHhhhhhchhhhhcCCCccHHHHHHHHHhhcCCCCCCCCChH
Q 021551 110 LEEREDFIASLES---RFLFLAADARSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTE 164 (311)
Q Consensus 110 ~~~R~~~i~~Ie~---rfrfLAADs~s~LRG~gpsYReVLldVc~kLkV~~s~klsT~ 164 (311)
...+..|++.-++ .||-+--+=+++| |++|+++|++|+|.|++.++..
T Consensus 199 ~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~-------K~~l~~~~~~l~i~~~~~~~~i 249 (258)
T cd07679 199 DQTTPQYMENMEQVFEQCQQFEEKRLRFF-------REVLLEVQKHLDLSNVASYKNI 249 (258)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccchhhhhHHHH
Confidence 3444455554433 3333334434444 5899999999999999977654
No 11
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=37.56 E-value=51 Score=24.70 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhhhch-hhhh--cCCCccHHHHHHHHHhhcCCCCC
Q 021551 114 EDFIASLESRFLFLAADA-RSTL--RGWRPSYRNVLLAVRKNLNIPCS 158 (311)
Q Consensus 114 ~~~i~~Ie~rfrfLAADs-~s~L--RG~gpsYReVLldVc~kLkV~~s 158 (311)
+.|+-.||..|.=|..|+ ...+ ..-.+-+|-++-+||++.|....
T Consensus 2 r~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~~gL~s~ 49 (63)
T cd02642 2 RLFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDHN 49 (63)
T ss_pred chHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHHhCCeeE
Confidence 368889999999999998 4443 44589999999999999887543
No 12
>PF04542 Sigma70_r2: Sigma-70 region 2 ; InterPro: IPR007627 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [, ]. The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1OR7_B 1H3L_B 2Z2S_C 2Q1Z_C 2O7G_B 1SMY_F 1IW7_P 2BE5_F 2A6E_F 2CW0_F ....
Probab=35.92 E-value=62 Score=22.73 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 021551 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (311)
Q Consensus 142 YReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~ 177 (311)
|...+..+|.+. ++.....+|+-+|.|+.+++.
T Consensus 5 ~~~~l~~~~~~~---~~~~~~~eD~~qe~~~~l~~~ 37 (71)
T PF04542_consen 5 YYPLLYRYARRY---TGDPEDAEDLVQEAFIKLWRA 37 (71)
T ss_dssp THHHHHHHHHTC---TTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCHhhHHHHhhHHHHHHHhh
Confidence 677788888888 555568999999999999987
No 13
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=35.44 E-value=1.3e+02 Score=32.43 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCC-----------cccCCchhhhhHHHhhhhhHHH
Q 021551 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS-----------WENSEASDAQNSLELGLSQWKV 211 (311)
Q Consensus 143 ReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~a-----------wek~~~~~e~~sl~~~l~~w~~ 211 (311)
.+=|..||++|+|+.+. -+..||=.|+=..+|+||.....+...+. |+|+.-- .+. ....+.
T Consensus 109 ~~KL~~~A~~~gi~t~g-~~~~eiA~~va~~~l~d~~~~~~~~~~~~~~~ap~~r~e~w~~lgi~-p~g-i~~ei~---- 181 (613)
T cd01915 109 EEKLKALAKRLGIDTEG-KSINEIAVEVAEIALEDFGRPREEPSRWVEAFAPEKRLELWEELGIL-PGG-IDSEIA---- 181 (613)
T ss_pred HHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHHhcCCCCcchhhHhhhCCHHHHHHHHHcCCC-ChH-HHHHHH----
Confidence 38899999999999776 56899999999999999987655555555 6666421 111 011122
Q ss_pred HHHhhhhcCc----hhhhHHHhccccchhH
Q 021551 212 QALAAFNAGA----VELKSMMLKGGGIYTL 237 (311)
Q Consensus 212 ~~la~~~lg~----~~lls~lLKGgsalav 237 (311)
.++.....|. .|++...|+-|-+..+
T Consensus 182 e~l~~t~~g~d~D~~~ll~~~Lr~Gla~~~ 211 (613)
T cd01915 182 EAMHRTHTGVDSDPVSLLLHSLRLGLAAGY 211 (613)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHhhhccH
Confidence 4445555553 5566666666664433
No 14
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=32.92 E-value=55 Score=26.79 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=27.8
Q ss_pred cHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhh
Q 021551 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY 178 (311)
Q Consensus 141 sYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~ 178 (311)
.|+..|..+|.++.. .....+|+.+|+|+++++..
T Consensus 9 ~~~~~l~~~~~~~~~---~~~~aEDivQe~~l~l~~~~ 43 (159)
T TIGR02989 9 RHQRSLRAFVRSLVP---DRDDADDVLQETFVTAWRKF 43 (159)
T ss_pred HhHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHHH
Confidence 477788888888854 34467999999999999873
No 15
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=32.12 E-value=3e+02 Score=31.17 Aligned_cols=132 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhcCCCCCCccchhhcccCCcchhHHhhchHHHHHHHHHHHHHHhhhhhch---hhhhc
Q 021551 60 DPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADA---RSTLR 136 (311)
Q Consensus 60 ~~ELr~vLelATdeEL~~L~~ILf~~s~fsPLlkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAADs---~s~LR 136 (311)
+|||.++++--|||||..| ++++-|+. +..+.+..--.+=+.=. +.|++
T Consensus 338 ~~~l~~lv~~~sD~~i~~l------------------~rgGHD~~----------~I~~A~~~A~~~~grPTvIlA~TvK 389 (885)
T TIGR00759 338 TPELKALVADMSDADIWAL------------------NRGGHDPR----------KVYAAYAAAQEHKGQPTVILAKTIK 389 (885)
T ss_pred cHHHHHHhhccchhhhhhc------------------cCCCCCHH----------HHHHHHHHHHhCCCCCEEEEEeeee
Q ss_pred CCCcc---------------HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCCcccCCchhhhhH
Q 021551 137 GWRPS---------------YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNS 201 (311)
Q Consensus 137 G~gps---------------YReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~~~~~~~~~~~~awek~~~~~e~~s 201 (311)
|+|+. =.+-|.+.+++++|| .+-++||. . .|.+.++..+.-.
T Consensus 390 G~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~----~~d~~~~~--------~-----------~~~~~~~~s~e~~ 446 (885)
T TIGR00759 390 GYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELP----LSDAQVEE--------L-----------PYYHPGEGSPEVR 446 (885)
T ss_pred cCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCC----CChhHhcc--------C-----------CCcCCCCCCHHHH
Q ss_pred HHhhhhhHHHHHHh-----------hhhcCchhhhHHHhccc------cchhHHHHHHHHHH
Q 021551 202 LELGLSQWKVQALA-----------AFNAGAVELKSMMLKGG------GIYTLVKIYQLLMR 246 (311)
Q Consensus 202 l~~~l~~w~~~~la-----------~~~lg~~~lls~lLKGg------salavssi~~~l~~ 246 (311)
....-. +.+. +..++.-+....++||+ ..+|+..|+..|+|
T Consensus 447 y~~~rr----~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r 504 (885)
T TIGR00759 447 YLLARR----QALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLK 504 (885)
T ss_pred HHHHHH----HHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhc
No 16
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=31.36 E-value=37 Score=27.56 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.7
Q ss_pred CCCccHHHHHHHHHhhcCCC
Q 021551 137 GWRPSYRNVLLAVRKNLNIP 156 (311)
Q Consensus 137 G~gpsYReVLldVc~kLkV~ 156 (311)
..+++|.++.-.|++|||+|
T Consensus 18 p~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 18 ARGLSYATLLQKISSKLELP 37 (80)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999998
No 17
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=29.72 E-value=63 Score=23.80 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhhhchhhhhcC--CCccHHHHHHHHHhhcCCCCCCC
Q 021551 117 IASLESRFLFLAADARSTLRG--WRPSYRNVLLAVRKNLNIPCSSK 160 (311)
Q Consensus 117 i~~Ie~rfrfLAADs~s~LRG--~gpsYReVLldVc~kLkV~~s~k 160 (311)
++.|+.+|+-|-+|....+.= =.+.-|.++-++|+.+++.+.+.
T Consensus 1 ~~~i~~~i~~F~~~~~~~~~fppm~~~~R~~vH~lA~~~~L~S~S~ 46 (58)
T cd02646 1 IEDIKDEIEAFLLDSRDSLSFPPMDKHGRKTIHKLANCYNLKSKSR 46 (58)
T ss_pred ChHHHHHHHHHHhCCCceEecCCCCHHHHHHHHHHHHHcCCccccc
Confidence 357899999999988544442 27888999999999999987654
No 18
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=28.68 E-value=52 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCCC---CCC--ChHHHHHHHHHHHHhh
Q 021551 145 VLLAVRKNLNIPCS---SKL--STEDLEAEIFLHLLQE 177 (311)
Q Consensus 145 VLldVc~kLkV~~s---~kl--sT~dLEaEIfLhLL~~ 177 (311)
-|-.+|++++|+.. ..- +-...-+++|++++++
T Consensus 151 ~L~~l~~~~gi~~~~~~~H~Al~DA~ata~lf~~l~~~ 188 (189)
T cd06134 151 VLAKACQAAGIEFDNKEAHSALYDTQKTAELFCKIVNR 188 (189)
T ss_pred cHHHHHHHCCCCCCCCCCcChHHHHHHHHHHHHHHHHh
Confidence 38899999999853 333 3445668999999987
No 19
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=27.63 E-value=1.1e+02 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=13.9
Q ss_pred HHHHHhhChHHHHHHHHHhcCCC
Q 021551 64 RSVLELATDSELYELERILFGPS 86 (311)
Q Consensus 64 r~vLelATdeEL~~L~~ILf~~s 86 (311)
..++.+-+.||.++|.+-|+.+.
T Consensus 8 ~~i~~l~~~ee~~~f~~dL~T~~ 30 (87)
T PF01371_consen 8 EAILSLKDEEECYDFFEDLCTPD 30 (87)
T ss_dssp HHHHCHHCHHCHHHHHHHHSSHH
T ss_pred HHHHHcCCHHHHHHHHHHhCCHH
Confidence 34555666666666666665544
No 20
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.45 E-value=78 Score=25.39 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHhhChHHHHHHHHHhcCCCCCCc
Q 021551 67 LELATDSELYELERILFGPSYFSP 90 (311)
Q Consensus 67 LelATdeEL~~L~~ILf~~s~fsP 90 (311)
+..+..|||-++++...+++.|||
T Consensus 33 ~d~~~~edLtdiy~mvkkkenfSp 56 (71)
T COG4840 33 YDNANYEDLTDIYDMVKKKENFSP 56 (71)
T ss_pred cccccHHHHHHHHHHHHHhccCCH
Confidence 456788999999999999999999
No 21
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=26.20 E-value=1.2e+02 Score=22.65 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhchhhhhcCCCccHHHHHHHHHhhc
Q 021551 109 DLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153 (311)
Q Consensus 109 ~~~~R~~~i~~Ie~rfrfLAADs~s~LRG~gpsYReVLldVc~kL 153 (311)
...+++..|+.|..+|--++.. ......++--|+++...+.+++
T Consensus 33 ~~~~k~~~W~~I~~~lN~~~~~-~Rs~~~lkkkW~nlk~~~Kk~~ 76 (78)
T PF13873_consen 33 SNKEKRKAWEEIAEELNALGPG-KRSWKQLKKKWKNLKSKAKKKL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 3667889999999999877664 3333344667777777776664
No 22
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=25.57 E-value=92 Score=24.83 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=26.3
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhc-CCCCCCc
Q 021551 60 DPELRSVLELATDSELYELERILF-GPSYFSP 90 (311)
Q Consensus 60 ~~ELr~vLelATdeEL~~L~~ILf-~~s~fsP 90 (311)
-+||+.+++--+++|..+|+.+.. ||-=|+|
T Consensus 3 ~~el~~~I~~l~~deqaeLvALmwiGRGd~~~ 34 (75)
T PF12616_consen 3 EEELRSFIEDLNEDEQAELVALMWIGRGDFEA 34 (75)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH
Confidence 379999999999999999999998 5554555
No 23
>PRK14082 hypothetical protein; Provisional
Probab=25.14 E-value=56 Score=25.86 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHHhh
Q 021551 162 STEDLEAEIFLHLLQE 177 (311)
Q Consensus 162 sT~dLEaEIfLhLL~~ 177 (311)
.-+|||+||=+++.++
T Consensus 33 eREDLeQElk~Ki~eK 48 (65)
T PRK14082 33 EREDLEQELKIKIIEK 48 (65)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3689999999999988
No 24
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=22.62 E-value=64 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhchhhhhcCCCccHHHHHHHHHhhcCC
Q 021551 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNI 155 (311)
Q Consensus 118 ~~Ie~rfrfLAADs~s~LRG~gpsYReVLldVc~kLkV 155 (311)
+.++..|+.+-.=++|.+|-..-.+.+-.++.||++||
T Consensus 36 ~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~Gi 73 (298)
T PF02836_consen 36 EAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGI 73 (298)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCC
Confidence 45667777777666999997655566888999999998
No 25
>PF07176 DUF1400: Alpha/beta hydrolase of unknown function (DUF1400); InterPro: IPR010802 This domain is specific to cyanobacterial proteins, its function and the function of the proteins it is associated with, are uncharacterised.
Probab=22.21 E-value=1.3e+02 Score=25.60 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=32.7
Q ss_pred CCCCCChhHHHHHHhhChHHHHHHHHHhcCCCCCCc
Q 021551 55 GQGAFDPELRSVLELATDSELYELERILFGPSYFSP 90 (311)
Q Consensus 55 ~~~~~~~ELr~vLelATdeEL~~L~~ILf~~s~fsP 90 (311)
..|..++||+..+.+.+.++.+.|-++|..+=.++|
T Consensus 26 ~tG~~~~~L~~~~~ll~~~~~~~lr~~L~~~~~~~~ 61 (127)
T PF07176_consen 26 ETGEISPELAFYLNLLSPQQRQQLRELLNTPIPIDP 61 (127)
T ss_pred HcCCCCHHHHHHHHhcCHhhHHHHHHHHcCCCCCCH
Confidence 367889999999999999999999999998887777
No 26
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=20.37 E-value=1.7e+02 Score=22.33 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHH
Q 021551 142 YRNVLLAVRKNLNIPCSSKLSTEDLE 167 (311)
Q Consensus 142 YReVLldVc~kLkV~~s~klsT~dLE 167 (311)
--+..+++|+++|||.. ..+++||-
T Consensus 63 Ni~~~l~~~~~~gi~~~-~~~~~Dl~ 87 (107)
T cd00014 63 NINLALNFAEKLGVPVV-NFDAEDLV 87 (107)
T ss_pred HHHHHHHHHHHcCCcee-ccCHHHHh
Confidence 34567789999999987 78889986
No 27
>PHA01745 hypothetical protein
Probab=20.04 E-value=47 Score=32.96 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=41.4
Q ss_pred HhhChHHHHHHHHHhcCCCCCCc-cchhhcccCCcchhHHhhchHHHHHHHHHHHHHHhhhhhchhhhhcCCCccHHHHH
Q 021551 68 ELATDSELYELERILFGPSYFSP-LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVL 146 (311)
Q Consensus 68 elATdeEL~~L~~ILf~~s~fsP-LlkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAADs~s~LRG~gpsYReVL 146 (311)
..+++|||+.|.++|-...|--| ++.|...+.-..-++.-+...+-+.+.-....+++-++-|+. .
T Consensus 210 ~k~~~eElE~l~~fL~kt~fpf~~~~~~f~~r~l~NAwvL~~~~~~~~n~~~~~~~~~~k~~~d~~-------------i 276 (306)
T PHA01745 210 RTLTKEEEESLKEFLDKTNFPFPYDVSNWKILSLVNAWILKYNNWNIDNKYTIYAHKLRKMGLDSL-------------V 276 (306)
T ss_pred cccchhhHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHhhcccccccChhehHHHHhhhcCHHHH-------------H
Confidence 77899999999999987664333 222222111111111222222233444456666666666653 5
Q ss_pred HHHHhhcCC
Q 021551 147 LAVRKNLNI 155 (311)
Q Consensus 147 ldVc~kLkV 155 (311)
-.+|++++|
T Consensus 277 ~e~~~~~~~ 285 (306)
T PHA01745 277 NEIIQNYKI 285 (306)
T ss_pred HHHHHHHHH
Confidence 567888877
Done!