Query 021551
Match_columns 311
No_of_seqs 72 out of 74
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 05:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 73.4 8.6 0.00029 32.1 6.7 93 60-176 14-108 (131)
2 3s0r_A De novo designed helica 43.3 25 0.00084 22.7 3.2 12 279-290 17-28 (30)
3 1kdx_B CREB; complex (transcri 36.0 16 0.00056 23.6 1.6 13 138-150 12-24 (28)
4 1oey_A P67-PHOX, neutrophil cy 18.6 67 0.0023 25.0 2.4 20 137-156 21-40 (83)
5 2vzs_A CSXA, EXO-beta-D-glucos 17.3 50 0.0017 35.2 1.9 37 118-155 374-411 (1032)
6 1rp3_A RNA polymerase sigma fa 16.4 2.8E+02 0.0097 22.4 6.0 36 142-177 21-56 (239)
7 4dnd_A Syntaxin-10, SYN10; str 15.9 76 0.0026 26.2 2.3 54 61-126 70-123 (130)
8 2do9_A NALP10, nacht-, LRR- an 15.5 2.3E+02 0.0077 22.8 5.0 25 61-85 18-42 (115)
9 1abv_A Delta subunit of the F1 15.2 2.1E+02 0.0072 22.2 4.7 68 61-138 41-109 (134)
10 2al3_A TUG long isoform; TUG U 14.1 76 0.0026 25.1 1.8 18 139-156 29-46 (90)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=73.42 E-value=8.6 Score=32.10 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=58.0
Q ss_pred ChhHHHHHHhhChHHHHHHHHHhcCCCCCCcc--chhhcccCCcchhHHhhchHHHHHHHHHHHHHHhhhhhchhhhhcC
Q 021551 60 DPELRSVLELATDSELYELERILFGPSYFSPL--LKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (311)
Q Consensus 60 ~~ELr~vLelATdeEL~~L~~ILf~~s~fsPL--lkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAADs~s~LRG 137 (311)
.|.....+...+-++|..|.+|||++. ...- -++|..=.+..+. .++.++++-.+.|+.
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~---~~~~~~~k~~e~l~K--------------- 74 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFE---KGSVQYKKKEEMLKK--------------- 74 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCC---CSSHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCC---ccHHHHHHHHHHHHc---------------
Confidence 456677788888889999999999886 3331 1333222222222 233344443333331
Q ss_pred CCccHHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHh
Q 021551 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ 176 (311)
Q Consensus 138 ~gpsYReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~ 176 (311)
...+-|.++|+=|+|+++. +.+||-+.|+-.|+.
T Consensus 75 ---~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~ 108 (131)
T 2jx3_A 75 ---FRNAMLKSICEVLDLERSG--VNSELVKRILNFLMH 108 (131)
T ss_dssp ---HHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTS
T ss_pred ---cCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhC
Confidence 1346788999999999985 467777777665554
No 2
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=43.35 E-value=25 Score=22.74 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=9.5
Q ss_pred hHHHHHHHHhhH
Q 021551 279 SRAALLAAKQGF 290 (311)
Q Consensus 279 ~~~al~aAr~G~ 290 (311)
.++|+|+|||.+
T Consensus 17 aqlalqaarqal 28 (30)
T 3s0r_A 17 AQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 477889998875
No 3
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=36.03 E-value=16 Score=23.60 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.0
Q ss_pred CCccHHHHHHHHH
Q 021551 138 WRPSYRNVLLAVR 150 (311)
Q Consensus 138 ~gpsYReVLldVc 150 (311)
++||||.||-|..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 5899999998764
No 4
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=18.56 E-value=67 Score=24.96 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.7
Q ss_pred CCCccHHHHHHHHHhhcCCC
Q 021551 137 GWRPSYRNVLLAVRKNLNIP 156 (311)
Q Consensus 137 G~gpsYReVLldVc~kLkV~ 156 (311)
.++.+|+++.-.||+||+++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 56999999999999999997
No 5
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=17.27 E-value=50 Score=35.25 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhchhhhhc-CCCccHHHHHHHHHhhcCC
Q 021551 118 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 155 (311)
Q Consensus 118 ~~Ie~rfrfLAADs~s~LR-G~gpsYReVLldVc~kLkV 155 (311)
+.++..|+.+-.-++|.+| ++.| ..+-..+.||++||
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 3455666666666689999 6677 89999999999998
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=16.37 E-value=2.8e+02 Score=22.36 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCChHHHHHHHHHHHHhh
Q 021551 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (311)
Q Consensus 142 YReVLldVc~kLkV~~s~klsT~dLEaEIfLhLL~~ 177 (311)
|...+..+|.++.-.+......+||-+|.|+.+++.
T Consensus 21 ~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 21 YLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 556666677766433456677999999999999987
No 7
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=15.87 E-value=76 Score=26.21 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=32.1
Q ss_pred hhHHHHHHhhChHHHHHHHHHhcCCCCCCccchhhcccCCcchhHHhhchHHHHHHHHHHHHHHhh
Q 021551 61 PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLF 126 (311)
Q Consensus 61 ~ELr~vLelATdeEL~~L~~ILf~~s~fsPLlkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrf 126 (311)
.||+..|+-+ +++|+||.+-+-= ..+++.+|.--......|++|+..+.+++.-
T Consensus 70 ~EL~~~l~si-e~dLeDLe~sI~i-----------vE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 70 NELRNGLRSI-EWDLEDLEETIGI-----------VEANPGKFKLPAGDLQERKVFVERMREAVQE 123 (130)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH-----------HHHCHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-----------HHhCHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4557777665 4567777665441 1111133322223478899999999988764
No 8
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=15.47 E-value=2.3e+02 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=22.0
Q ss_pred hhHHHHHHhhChHHHHHHHHHhcCC
Q 021551 61 PELRSVLELATDSELYELERILFGP 85 (311)
Q Consensus 61 ~ELr~vLelATdeEL~~L~~ILf~~ 85 (311)
+-|...||.-+++||..|-.+|-..
T Consensus 18 ~~Ll~~Le~L~~eElkkFK~~L~~~ 42 (115)
T 2do9_A 18 EALLWALNDLEENSFKTLKFHLRDV 42 (115)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHccC
Confidence 6788899999999999999999643
No 9
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=15.21 E-value=2.1e+02 Score=22.22 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=32.1
Q ss_pred hhHHHHHH-hhChHHHHHHHHHhcCCCCCCccchhhcccCCcchhHHhhchHHHHHHHHHHHHHHhhhhhchhhhhcCC
Q 021551 61 PELRSVLE-LATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGW 138 (311)
Q Consensus 61 ~ELr~vLe-lATdeEL~~L~~ILf~~s~fsPLlkSi~kr~~~D~~~i~~~~~~R~~~i~~Ie~rfrfLAADs~s~LRG~ 138 (311)
||++.+|. ..+.++-.++..-+++.. ++|.+.+.. --.-..+|-..+..|-.+|.-+.+...++..+.
T Consensus 41 ~~l~~~l~P~i~~~~K~~~l~~~~~~~-~~~~~~nfl---------~ll~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~ 109 (134)
T 1abv_A 41 EQMAELLSGALAPETLAESFIAVCGEQ-LDENGQNLI---------RVMAENGRLNALPDVLEQFIHLRAVSEATAEVD 109 (134)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHCSC-CCHHHHHHH---------HHHHHTTCGGGHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHCccCCHHHHHHHHHHHHhcc-CCHHHHHHH---------HHHHHCCcHHHHHHHHHHHHHHHHHHCCeeEEE
Confidence 55555553 224444444444444432 444333332 111223344566677777777777776666653
No 10
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=14.08 E-value=76 Score=25.10 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=16.1
Q ss_pred CccHHHHHHHHHhhcCCC
Q 021551 139 RPSYRNVLLAVRKNLNIP 156 (311)
Q Consensus 139 gpsYReVLldVc~kLkV~ 156 (311)
+-+-.|||.++|+|+|++
T Consensus 29 ~t~L~~VL~eaC~K~gl~ 46 (90)
T 2al3_A 29 STVLLQVLEDTCRRQDFN 46 (90)
T ss_dssp TSBHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhCCC
Confidence 567889999999999996
Done!