Query 021552
Match_columns 311
No_of_seqs 210 out of 1505
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 05:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1.4E-49 4.7E-54 359.6 27.4 235 6-244 2-242 (257)
2 2i53_A Cyclin K; cell cycle, t 100.0 2.2E-48 7.6E-53 351.7 25.1 231 4-247 10-256 (258)
3 2pk2_A Cyclin-T1, protein TAT; 100.0 3.1E-49 1E-53 372.5 18.0 239 4-246 7-251 (358)
4 3rgf_B Cyclin-C; protein kinas 100.0 2.3E-49 7.8E-54 363.2 15.7 232 4-244 11-244 (285)
5 1zp2_A RNA polymerase II holoe 100.0 1.4E-45 4.8E-50 329.2 13.4 219 4-246 5-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 1.6E-41 5.4E-46 316.1 21.6 222 4-243 6-262 (323)
7 3g33_B CCND3 protein; Ser/Thr 100.0 1.2E-36 4E-41 281.3 15.4 207 20-246 56-271 (306)
8 2b9r_A Human cyclin B1; cell c 100.0 6.3E-35 2.2E-39 265.2 17.1 200 20-242 25-225 (269)
9 2w96_A G1/S-specific cyclin-D1 100.0 5.3E-35 1.8E-39 266.0 16.6 198 29-246 51-261 (271)
10 1g3n_C V-cyclin; cyclin-depend 100.0 1E-34 3.4E-39 262.2 17.5 198 30-247 46-253 (257)
11 2cch_B Cyclin A2, cyclin-A; co 100.0 2.7E-34 9.1E-39 259.9 17.5 187 31-242 35-228 (260)
12 1c9b_A General transcription f 100.0 8E-34 2.7E-38 248.3 17.5 184 35-241 5-188 (207)
13 2f2c_A Cyclin homolog, V-cycli 100.0 8.2E-34 2.8E-38 255.8 15.5 197 25-245 42-251 (254)
14 1f5q_B Gamma herpesvirus cycli 100.0 1.1E-31 3.7E-36 241.4 16.1 200 25-247 39-247 (252)
15 1w98_B Cyclin E, G1/S-specific 100.0 1E-30 3.5E-35 239.1 16.5 184 31-242 46-242 (283)
16 1ais_B TFB TFIIB, protein (tra 100.0 2E-29 6.8E-34 219.2 17.6 184 35-241 9-194 (200)
17 3k7a_M Transcription initiatio 99.9 3.4E-27 1.2E-31 221.3 4.5 183 36-241 127-321 (345)
18 4bbr_M Transcription initiatio 99.8 3.6E-21 1.2E-25 180.0 9.0 182 36-240 127-320 (345)
19 1ais_B TFB TFIIB, protein (tra 98.1 8.9E-06 3E-10 69.6 9.1 89 39-149 109-197 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 97.7 0.00031 1.1E-08 63.3 11.3 101 39-162 78-182 (293)
21 1c9b_A General transcription f 97.6 0.00019 6.4E-09 61.6 8.8 68 39-106 103-170 (207)
22 4bbr_M Transcription initiatio 96.7 0.0039 1.3E-07 57.8 8.2 91 151-242 126-216 (345)
23 1zp2_A RNA polymerase II holoe 96.2 0.025 8.6E-07 49.2 9.6 87 155-241 32-126 (235)
24 3k7a_M Transcription initiatio 96.0 0.0035 1.2E-07 58.1 3.2 88 153-241 128-215 (345)
25 3rgf_B Cyclin-C; protein kinas 95.6 0.044 1.5E-06 49.2 8.7 86 155-240 47-148 (285)
26 1jkw_A Cyclin H; cell cycle, c 95.3 0.11 3.6E-06 47.6 10.4 85 156-241 62-155 (323)
27 2b9r_A Human cyclin B1; cell c 95.0 0.099 3.4E-06 46.4 9.2 86 156-241 43-130 (269)
28 2ivx_A Cyclin-T2; transcriptio 94.7 0.1 3.5E-06 45.8 8.2 57 155-211 35-91 (257)
29 2i53_A Cyclin K; cell cycle, t 94.5 0.12 4.1E-06 45.3 8.2 57 155-211 45-101 (258)
30 2cch_B Cyclin A2, cyclin-A; co 94.3 0.1 3.5E-06 45.9 7.4 86 156-241 44-131 (260)
31 1g3n_C V-cyclin; cyclin-depend 94.2 0.14 4.9E-06 45.0 8.1 86 156-241 56-143 (257)
32 2f2c_A Cyclin homolog, V-cycli 94.1 0.22 7.4E-06 43.7 9.1 86 156-241 57-144 (254)
33 3g33_B CCND3 protein; Ser/Thr 94.0 0.18 6.2E-06 45.6 8.5 86 156-241 76-163 (306)
34 2pk2_A Cyclin-T1, protein TAT; 93.9 0.13 4.4E-06 47.7 7.4 57 155-211 42-98 (358)
35 2w96_A G1/S-specific cyclin-D1 93.7 0.24 8.3E-06 43.8 8.8 86 156-241 62-149 (271)
36 1w98_B Cyclin E, G1/S-specific 93.5 0.24 8.2E-06 44.2 8.4 86 156-241 55-143 (283)
37 3m03_A ORC6, origin recognitio 90.7 0.72 2.5E-05 34.2 6.5 55 42-97 6-65 (95)
38 3h4c_A Transcription factor TF 90.5 1.2 4.2E-05 37.6 8.4 66 38-103 15-83 (260)
39 1f5q_B Gamma herpesvirus cycli 90.3 0.72 2.5E-05 40.4 7.4 86 156-241 54-141 (252)
40 2pmi_B PHO85 cyclin PHO80, ami 83.4 5.1 0.00017 35.8 8.8 88 154-241 77-167 (293)
41 3m03_A ORC6, origin recognitio 81.2 7.2 0.00025 28.8 7.5 79 161-241 9-92 (95)
42 4ell_A Retinoblastoma-associat 78.0 7.5 0.00026 36.4 8.4 69 38-106 282-353 (411)
43 2r7g_A PP110, retinoblastoma-a 77.8 7.8 0.00027 35.5 8.3 69 38-106 218-289 (347)
44 2qdj_A Retinoblastoma-associat 75.1 8.3 0.00028 34.7 7.6 64 42-105 6-73 (304)
45 4elj_A Retinoblastoma-associat 70.6 16 0.00055 36.3 9.0 71 38-108 527-600 (656)
46 2r7g_A PP110, retinoblastoma-a 66.2 24 0.00083 32.2 8.7 85 128-212 165-279 (347)
47 4elj_A Retinoblastoma-associat 60.2 22 0.00075 35.3 7.7 63 42-105 8-75 (656)
48 3h4c_A Transcription factor TF 49.2 54 0.0018 27.7 7.1 57 158-214 19-78 (260)
49 2ju4_A GMP-PDE gamma, retinal 44.6 18 0.00062 25.3 3.0 28 281-308 6-33 (87)
50 2wh0_Q Pkcev3, protein kinase 36.7 27 0.00091 19.3 2.3 17 132-148 13-29 (31)
51 4ell_A Retinoblastoma-associat 36.4 56 0.0019 30.5 5.9 55 158-212 286-343 (411)
52 2qdj_A Retinoblastoma-associat 33.3 75 0.0026 28.3 6.1 51 158-208 6-59 (304)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.4e-49 Score=359.57 Aligned_cols=235 Identities=29% Similarity=0.506 Sum_probs=217.4
Q ss_pred CCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHH
Q 021552 6 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSV 85 (311)
Q Consensus 6 ~~~wl~t~e~l~~~pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acL 85 (311)
.++||||+|||+++||+++|++.+.|..+|..+++||.++|..|+|++.|+++|++|||||+.++++.+++++++|+|||
T Consensus 2 ~~~w~~t~e~l~~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL 81 (257)
T 2ivx_A 2 SSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL 81 (257)
T ss_dssp CGGGSCCHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred CCCeeecHHHHHhChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCcccHHHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHc
Q 021552 86 WLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATL 165 (311)
Q Consensus 86 fLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l 165 (311)
|||||+||.|+++++++.+++.+.++.. ..++..++.|...+++|+.+|+.||++|||++.++||+.|+.+|++.+
T Consensus 82 ~lA~K~EE~p~~l~d~~~~~~~~~~~~~----~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l 157 (257)
T 2ivx_A 82 FLAAKVEEQARKLEHVIKVAHACLHPLE----PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV 157 (257)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHCTTS----CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred HHHhccccCCcCHHHHHHHHHHHhccCC----CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence 9999999999999999999887765422 123456788988899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhc-CcccccCChHHHHHHHHHHHHHHcCCCCCC---Cccccccc--cCCHHHHHHHHHHHHHh
Q 021552 166 ETPLELRQEAWNLANDSLR-TTLCVRFKSEVVACGVVYAAARRFQIPLPE---NPPWWKAF--DAEKSGIDEVCRVLAHL 239 (311)
Q Consensus 166 ~~~~~l~~~A~~l~~ds~~-t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~---~~~w~~~~--~~~~~~l~~~~~~il~l 239 (311)
+.++++.+.||+++++++. +++|+.|+|+.||+||||+|++.+|.++|. +.+||..| ++++++|.++++.|+++
T Consensus 158 ~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~ 237 (257)
T 2ivx_A 158 RASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQI 237 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999984 889999999999999999999999988764 46799988 58999999999999999
Q ss_pred hcCCC
Q 021552 240 YSLPK 244 (311)
Q Consensus 240 y~~~k 244 (311)
|....
T Consensus 238 ~~~~~ 242 (257)
T 2ivx_A 238 LEKTP 242 (257)
T ss_dssp HHTSH
T ss_pred HHhCh
Confidence 97643
No 2
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.2e-48 Score=351.72 Aligned_cols=231 Identities=32% Similarity=0.575 Sum_probs=211.8
Q ss_pred ccCCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHH
Q 021552 4 TAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAAS 83 (311)
Q Consensus 4 ~~~~~wl~t~e~l~~~pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~a 83 (311)
...++||||++||+++||+.+|++.+.|..+|..+++||.++|..|+|++.|+++|++|||||+.++++.+++++++|+|
T Consensus 10 ~~~~~w~~~~~el~~~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~a 89 (258)
T 2i53_A 10 HTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGAC 89 (258)
T ss_dssp SCSSSCCCCGGGGGGCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred hhccCCccCHHHHHhCchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHH
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCcccHHHHHHHHHHhhhhccCCCccccccchHHHH----HHHHHHHHHHHHHHHHcCceeeecChHHHHH
Q 021552 84 SVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFS----ELKMEMSRTERHILKEMGFVCHVEHPHKFIS 159 (311)
Q Consensus 84 cLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~----~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~ 159 (311)
|||||||+||.|+++++++.+++.+.. ++.|. ..+++|+.+|+.||++|||++.+++|+.|+.
T Consensus 90 cL~lA~K~eE~~~~l~d~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~ 156 (258)
T 2i53_A 90 CLFLAGKVEETPKKCKDIIKTARSLLN-------------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLL 156 (258)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHSC-------------HHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHccccccccHHHHHHHHHHHhc-------------hhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHH
Confidence 999999999999999999988765431 12221 1478999999999999999999999999999
Q ss_pred HHHHHcCCCH----HHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCC------CCccccccc--cCCHH
Q 021552 160 NYLATLETPL----ELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLP------ENPPWWKAF--DAEKS 227 (311)
Q Consensus 160 ~~l~~l~~~~----~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp------~~~~w~~~~--~~~~~ 227 (311)
+|++.++.+. ++.+.||+++++++.++.|+.|+|+.||+||||+|++.+|.++| ...+||..| |++++
T Consensus 157 ~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 236 (258)
T 2i53_A 157 KYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVD 236 (258)
T ss_dssp HHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHH
Confidence 9999999876 68999999999999999999999999999999999999998754 345799998 89999
Q ss_pred HHHHHHHHHHHhhcCCCCcc
Q 021552 228 GIDEVCRVLAHLYSLPKAKY 247 (311)
Q Consensus 228 ~l~~~~~~il~ly~~~k~~~ 247 (311)
++.++++.|+++|.++++++
T Consensus 237 ~l~~~~~~il~ly~~~~~~~ 256 (258)
T 2i53_A 237 VLEDICHQILDLYSQGKQQM 256 (258)
T ss_dssp HHHHHHHHHHTTTSSSCCCC
T ss_pred HHHHHHHHHHHHHhcccccC
Confidence 99999999999999888765
No 3
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.1e-49 Score=372.49 Aligned_cols=239 Identities=29% Similarity=0.483 Sum_probs=218.9
Q ss_pred ccCCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHH
Q 021552 4 TAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAAS 83 (311)
Q Consensus 4 ~~~~~wl~t~e~l~~~pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~a 83 (311)
.+.++||||+|||+++||+++|++.+.|..+|..+++||.+++..|+|++.|+++|++||||||.++++.++++++|++|
T Consensus 7 ~~~~~wlft~eeL~~~pS~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~a 86 (358)
T 2pk2_A 7 NNNKRWYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPA 86 (358)
T ss_dssp -CCSSSSCCSHHHHTCTTHHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHH
T ss_pred CCCCCceeCHHHHHhChhhhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCcccHHHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHH
Q 021552 84 SVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLA 163 (311)
Q Consensus 84 cLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~ 163 (311)
|||||||+||.|+++++++.+++.+.++... .++..++.|...+++|+.||+.||++|+|++.++||+.||.+|++
T Consensus 87 cLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~----~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~ 162 (358)
T 2pk2_A 87 ALFLAAKVEEQPKKLEHVIKVAHTCLHPQES----LPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQ 162 (358)
T ss_dssp HHHHHHHHTTCCCCHHHHHTTHHHHHCSSSC----CCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHH
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhccccc----cccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHH
Confidence 9999999999999999999988877644221 234556788878899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHhhhc-CcccccCChHHHHHHHHHHHHHHcCCCCCC---Cccccccc--cCCHHHHHHHHHHHH
Q 021552 164 TLETPLELRQEAWNLANDSLR-TTLCVRFKSEVVACGVVYAAARRFQIPLPE---NPPWWKAF--DAEKSGIDEVCRVLA 237 (311)
Q Consensus 164 ~l~~~~~l~~~A~~l~~ds~~-t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~---~~~w~~~~--~~~~~~l~~~~~~il 237 (311)
.++.++++.+.||+++++++. +++|+.|+|+.||+||||+|++.++.++|. +.+||..| ++++++|.+++..|+
T Consensus 163 ~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il 242 (358)
T 2pk2_A 163 LVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFL 242 (358)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999984 889999999999999999999999988764 46799998 479999999999999
Q ss_pred HhhcCCCCc
Q 021552 238 HLYSLPKAK 246 (311)
Q Consensus 238 ~ly~~~k~~ 246 (311)
++|......
T Consensus 243 ~~y~~~~~~ 251 (358)
T 2pk2_A 243 QILEKTPNR 251 (358)
T ss_dssp HHTTTCTTH
T ss_pred HHHHhCccc
Confidence 999876553
No 4
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=363.22 Aligned_cols=232 Identities=27% Similarity=0.348 Sum_probs=207.5
Q ss_pred ccCCCcccCHHHHhcCCC-ccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHH
Q 021552 4 TAIDNFYLTDEQLKDSPS-RKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAA 82 (311)
Q Consensus 4 ~~~~~wl~t~e~l~~~pS-~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~ 82 (311)
|+..+||||++||.++++ ..+|++.++|.++|..+++||.++|..|+|++.|+++|++|||||+.++++.++++++|++
T Consensus 11 s~~~~Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~ 90 (285)
T 3rgf_B 11 SHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAP 90 (285)
T ss_dssp HHHHHHSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred cccCCcCcCHHHHHHhhhcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHH
Confidence 355679999999987655 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCcc-cHHHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHH
Q 021552 83 SSVWLASKLEESPR-KARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNY 161 (311)
Q Consensus 83 acLfLA~K~EE~~~-~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~ 161 (311)
||||||||+||+++ .+++++.++..+.+.+... ..++.|...+++|+++|+.||++|||++.++|||+||.+|
T Consensus 91 acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~------~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~ 164 (285)
T 3rgf_B 91 TCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSY------AFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQY 164 (285)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT------TCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHH
T ss_pred HHHHHHHhhhccccccHHHHHHHHHHHHcccccc------cCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHH
Confidence 99999999999987 5899998877654321110 1122333467999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 021552 162 LATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 241 (311)
Q Consensus 162 l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~ 241 (311)
++.++.++++.+.||++++|++.+++|+.|+|+.||+||||+|++.+|.+. ++||..||+++++|.+|+..|+++|.
T Consensus 165 ~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~~~~il~ly~ 241 (285)
T 3rgf_B 165 VQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKILEIIRVILKLYE 241 (285)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998754 57999999999999999999999998
Q ss_pred CCC
Q 021552 242 LPK 244 (311)
Q Consensus 242 ~~k 244 (311)
+++
T Consensus 242 ~~~ 244 (285)
T 3rgf_B 242 QWK 244 (285)
T ss_dssp HHH
T ss_pred hcc
Confidence 643
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-45 Score=329.18 Aligned_cols=219 Identities=19% Similarity=0.293 Sum_probs=197.8
Q ss_pred ccCCCcccCHHHHhcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCccc-chHHHHHH
Q 021552 4 TAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFAR-FDVKIVAA 82 (311)
Q Consensus 4 ~~~~~wl~t~e~l~~~pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~-~~~~lva~ 82 (311)
|+..+|+||++||.++|+..++ + |..+++||.++|..|+||+.|+++|++|||||+.++++.+ +++++|++
T Consensus 5 s~~~~w~ft~~~l~~~~~~~~~-----~---R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~ 76 (235)
T 1zp2_A 5 SQLTQLFLSTDLESLEPTCLSK-----D---TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVA 76 (235)
T ss_dssp GGGTGGGSCSSCTTSSCCCSCH-----H---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHH
T ss_pred CCCCCCccCHHHHHHCCcchhH-----H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHH
Confidence 6788999999999988876543 1 9999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhccCcccHHHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHH
Q 021552 83 SSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYL 162 (311)
Q Consensus 83 acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l 162 (311)
||||||||+||+|++++|++.+++++.. +.|...+++|+++|+.||++|||++.+++|+.||.+|+
T Consensus 77 acL~lA~K~Ee~~~~l~d~~~~~~~~~~--------------~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~ 142 (235)
T 1zp2_A 77 TCIYLSCKVEECPVHIRTICNEANDLWS--------------LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAF 142 (235)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTTCC--------------CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHH
T ss_pred HHHHHHhccccCcccHHHHHHHHHHHcc--------------chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHH
Confidence 9999999999999999999998775431 11222568999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC
Q 021552 163 ATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL 242 (311)
Q Consensus 163 ~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 242 (311)
+.++.++++.+.||+++++++.+++|+.|+|+.||+||||+|++.+|.++|...+||. |+++++|.+|++.|+++|..
T Consensus 143 ~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 143 HDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIK--STDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp HTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC--HHHHHHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh--cCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998876654456876 99999999999999999987
Q ss_pred CCCc
Q 021552 243 PKAK 246 (311)
Q Consensus 243 ~k~~ 246 (311)
.+..
T Consensus 221 ~~~~ 224 (235)
T 1zp2_A 221 EDIE 224 (235)
T ss_dssp SSHH
T ss_pred CCcC
Confidence 6653
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.6e-41 Score=316.12 Aligned_cols=222 Identities=19% Similarity=0.260 Sum_probs=191.5
Q ss_pred ccCCCcccCH-HHHhc-------------------CCCccCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHH
Q 021552 4 TAIDNFYLTD-EQLKD-------------------SPSRKDGIDEATETTLRIYGCDLIQESGILLK--LPQAVMATGQV 61 (311)
Q Consensus 4 ~~~~~wl~t~-e~l~~-------------------~pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~--L~~~t~~tA~~ 61 (311)
||..+|+||. ++|.+ .+|..+|++.++|..+|..+++||.++|..|+ ||+.|+++|++
T Consensus 6 tq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~ 85 (323)
T 1jkw_A 6 SQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACM 85 (323)
T ss_dssp -----CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6788999995 77752 25788999999999999999999999999999 99999999999
Q ss_pred HHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHH
Q 021552 62 LFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHI 141 (311)
Q Consensus 62 ~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~I 141 (311)
||||||.++++.++++++||+||||||||+||.|+++++++.+.. .++......+++|+.+|+.|
T Consensus 86 ~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~---------------~~p~~~~~~~~~Il~~E~~i 150 (323)
T 1jkw_A 86 YFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR---------------ESPLGQEKALEQILEYELLL 150 (323)
T ss_dssp HHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS---------------SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc---------------cChhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875321 01112234689999999999
Q ss_pred HHHcCceeeecChHHHHHHHHHHc-------CCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCC
Q 021552 142 LKEMGFVCHVEHPHKFISNYLATL-------ETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPE 214 (311)
Q Consensus 142 L~~L~F~l~v~~P~~~l~~~l~~l-------~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~ 214 (311)
|++|||++.++||+.||.+|+..+ +.++++.+.||+++++++.+++|+.|+|+.||+||||+|+..+|.++|.
T Consensus 151 L~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~ 230 (323)
T 1jkw_A 151 IQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMES 230 (323)
T ss_dssp HHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTT
T ss_pred HHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHH
Confidence 999999999999999999999765 2346789999999999999999999999999999999999999987763
Q ss_pred Ccccccc-cc-----CCHHHHHHHHHHHHHhhcCC
Q 021552 215 NPPWWKA-FD-----AEKSGIDEVCRVLAHLYSLP 243 (311)
Q Consensus 215 ~~~w~~~-~~-----~~~~~l~~~~~~il~ly~~~ 243 (311)
|+.. ++ ++.+++.++++.|..+|...
T Consensus 231 ---w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 231 ---YLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp ---HHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 8874 34 47899999999999999874
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=281.26 Aligned_cols=207 Identities=13% Similarity=0.115 Sum_probs=178.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccH
Q 021552 20 PSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKA 98 (311)
Q Consensus 20 pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l 98 (311)
|++.+++..+.+..+|..+++||.+++..++|+++|+++|++|||||+.++++.+.+++++|+||||||||+||. ++++
T Consensus 56 ~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~ 135 (306)
T 3g33_B 56 ASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTI 135 (306)
T ss_dssp SCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCT
T ss_pred cHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 455666666667789999999999999999999999999999999999999999999999999999999999995 6789
Q ss_pred HHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCH----HHHHH
Q 021552 99 RQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL----ELRQE 174 (311)
Q Consensus 99 ~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~----~l~~~ 174 (311)
++++.++... | .+++|++||+.||++|+|++.+++|+.||.+|++.++.+. .+.+.
T Consensus 136 ~~l~~~~~~~------------------~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~ 195 (306)
T 3g33_B 136 EKLCIYTDHA------------------V--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKH 195 (306)
T ss_dssp THHHHHTTTS------------------S--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHH
T ss_pred HHHHHHhccC------------------c--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHH
Confidence 9988754321 2 4689999999999999999999999999999999987653 36678
Q ss_pred HHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc----cCCHHHHHHHHHHHHHhhcCCCCc
Q 021552 175 AWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF----DAEKSGIDEVCRVLAHLYSLPKAK 246 (311)
Q Consensus 175 A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~----~~~~~~l~~~~~~il~ly~~~k~~ 246 (311)
|++++++++.+..|+.|+|+.||+|||++|...++...+|...|+..+ |++.++|.+|+..|.++|.+.-.+
T Consensus 196 a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~ 271 (306)
T 3g33_B 196 AQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 271 (306)
T ss_dssp HHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986555555676654 899999999999999999874433
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=6.3e-35 Score=265.25 Aligned_cols=200 Identities=19% Similarity=0.210 Sum_probs=175.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccH
Q 021552 20 PSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKA 98 (311)
Q Consensus 20 pS~~~gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l 98 (311)
|++.++- +....+|..+++||.+++..++++++|+++|++|+|||+.++++.+.+++++|+||||||||+||. ++++
T Consensus 25 ~~y~~~q--~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~ 102 (269)
T 2b9r_A 25 PKYLLGR--EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEI 102 (269)
T ss_dssp TTTTSSS--SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCH
T ss_pred cccccCC--CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccH
Confidence 4554442 445689999999999999999999999999999999999999999999999999999999999997 7899
Q ss_pred HHHHHHHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHHHHHHHHHH
Q 021552 99 RQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNL 178 (311)
Q Consensus 99 ~~i~~v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~l~~~A~~l 178 (311)
+|++.+++. .| .+++|++||+.||++|||++.+++|+.|+.+|++.++.+.++.+.|+++
T Consensus 103 ~d~~~~~~~------------------~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l 162 (269)
T 2b9r_A 103 GDFAFVTDN------------------TY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYL 162 (269)
T ss_dssp HHHHHHTCS------------------SS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHhcC------------------CC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999875431 12 4689999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC
Q 021552 179 ANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL 242 (311)
Q Consensus 179 ~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 242 (311)
+++++.+..++.|+|+.||+||||+|+..+|.+ +|.+......|++++++.+|++.|.+++..
T Consensus 163 ~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~ 225 (269)
T 2b9r_A 163 MELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESLLPVMQHLAKNVVM 225 (269)
T ss_dssp HHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTTTTHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 222222234589999999999999998853
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=5.3e-35 Score=266.01 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccHHHHHHHHHH
Q 021552 29 ATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHR 107 (311)
Q Consensus 29 ~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~v~~~ 107 (311)
+....+|..+++||.+++..++++++|+++|++|+|||+++.++.+.+++++|+||||||||+||. |+++++++.++..
T Consensus 51 ~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~ 130 (271)
T 2w96_A 51 EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDN 130 (271)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC
Confidence 334679999999999999999999999999999999999999999999999999999999999998 9999999865431
Q ss_pred hhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHHH----HHHHHHHHHhhh
Q 021552 108 MECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLEL----RQEAWNLANDSL 183 (311)
Q Consensus 108 ~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~l----~~~A~~l~~ds~ 183 (311)
.| .+++|++||+.||++|||++.+++|+.|+.+|++.++.+.+. .+.|++++++++
T Consensus 131 ------------------~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~ 190 (271)
T 2w96_A 131 ------------------SI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCA 190 (271)
T ss_dssp ------------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHH
Confidence 12 468999999999999999999999999999999999987543 467999999998
Q ss_pred cCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccc--------cccCCHHHHHHHHHHHHHhhcCCCCc
Q 021552 184 RTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWK--------AFDAEKSGIDEVCRVLAHLYSLPKAK 246 (311)
Q Consensus 184 ~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~--------~~~~~~~~l~~~~~~il~ly~~~k~~ 246 (311)
.+..++.|+|+.||+||||+|+..++.+.+..+.|+. ..|++++++.+|++.|.++|.....+
T Consensus 191 ~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 191 TDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQ 261 (271)
T ss_dssp TSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTS
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999988754444344654 36899999999999999999765443
No 10
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-34 Score=262.24 Aligned_cols=198 Identities=13% Similarity=0.109 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccHHHHHHHHHHh
Q 021552 30 TETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRM 108 (311)
Q Consensus 30 ~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~v~~~~ 108 (311)
....+|..+++||.+++..++++++|+++|++|+|||+.++++.+.+++++|+||||||||+||. |+++++++.+++.
T Consensus 46 i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~- 124 (257)
T 1g3n_C 46 LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAAD- 124 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCC-
Confidence 34679999999999999999999999999999999999999999999999999999999999996 8999999875432
Q ss_pred hhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHH----HHHHHHHHHHhhhc
Q 021552 109 ECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE----LRQEAWNLANDSLR 184 (311)
Q Consensus 109 ~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~----l~~~A~~l~~ds~~ 184 (311)
.| .+++|++||+.||++|||++.+++|+.|+.+|++.++.+.+ +.+.|++++++++.
T Consensus 125 -----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~ 185 (257)
T 1g3n_C 125 -----------------SF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV 185 (257)
T ss_dssp -----------------CS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHT
T ss_pred -----------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh
Confidence 12 46899999999999999999999999999999999987532 46789999999999
Q ss_pred CcccccCChHHHHHHHHHHHHHHcCCCCCCC-ccccccc----cCCHHHHHHHHHHHHHhhcCCCCcc
Q 021552 185 TTLCVRFKSEVVACGVVYAAARRFQIPLPEN-PPWWKAF----DAEKSGIDEVCRVLAHLYSLPKAKY 247 (311)
Q Consensus 185 t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~-~~w~~~~----~~~~~~l~~~~~~il~ly~~~k~~~ 247 (311)
+..++.|+|+.||+|||++|...++.+.+.+ +.|+..+ |++.+++.+|++.|.++|...+.+.
T Consensus 186 d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~~~ 253 (257)
T 1g3n_C 186 DPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDLRI 253 (257)
T ss_dssp STTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCHHh
Confidence 9999999999999999999999888643322 3577654 8999999999999999997655444
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.7e-34 Score=259.89 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccHHHHHHHHHHhh
Q 021552 31 ETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRME 109 (311)
Q Consensus 31 e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~v~~~~~ 109 (311)
...+|..+++||.+++..++++++|+++|++|+|||++++++.+.+++++|+||||||||+||. +++++|++.+++.
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~-- 112 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD-- 112 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--
Confidence 4678999999999999999999999999999999999999999999999999999999999998 8999999875431
Q ss_pred hhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCH-HHHHHHHHHHHhhhcCcc-
Q 021552 110 CRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL-ELRQEAWNLANDSLRTTL- 187 (311)
Q Consensus 110 ~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~-~l~~~A~~l~~ds~~t~~- 187 (311)
.| .+++|++||+.||++|||++.+++|+.|+.+|++.++.+. ++.+.|++++++++.+..
T Consensus 113 ----------------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~ 174 (260)
T 2cch_B 113 ----------------TY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADP 174 (260)
T ss_dssp ----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHH
T ss_pred ----------------Cc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHH
Confidence 12 4689999999999999999999999999999999999765 899999999999988776
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCCccccccc----cCCHHHHHHHHHHHHHhhcC
Q 021552 188 CVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF----DAEKSGIDEVCRVLAHLYSL 242 (311)
Q Consensus 188 ~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~----~~~~~~l~~~~~~il~ly~~ 242 (311)
++.|+|+.||+||||+|+..++. +.|+..+ |++++++.+|++.|.++|..
T Consensus 175 ~~~~~Ps~iAaAai~lA~~~~~~-----~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~ 228 (260)
T 2cch_B 175 YLKYLPSVIAGAAFHLALYTVTG-----QSWPESLIRKTGYTLESLKPCLMDLHQTYLK 228 (260)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHS-----CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHhCC-----CcchHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998875 3477654 89999999999999999864
No 12
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=8e-34 Score=248.32 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccC
Q 021552 35 RIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREG 114 (311)
Q Consensus 35 R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~ 114 (311)
...+.++|.++|..|+||+.|+++|++|||||+.++++++++++.+++||||+|||+||.|++++|++.+++ +
T Consensus 5 l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-~------ 77 (207)
T 1c9b_A 5 MMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-I------ 77 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS-S------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-C------
Confidence 457899999999999999999999999999999999999999999999999999999999999999987543 1
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChH
Q 021552 115 LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSE 194 (311)
Q Consensus 115 ~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~ 194 (311)
.+.+|.++|+.||+.|||++.+++|+.|+.+|++.+++++++.+.||.++++++.++++++|+|+
T Consensus 78 ---------------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~ 142 (207)
T 1c9b_A 78 ---------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 142 (207)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHH
T ss_pred ---------------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChH
Confidence 24688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 021552 195 VVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 241 (311)
Q Consensus 195 ~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~ 241 (311)
.||+||||+|++.+|.+.+. ..|++..|+++.+|..+++.|.+...
T Consensus 143 ~IAaAaiylA~~~~~~~~~~-~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 143 SVAAAAIYMASQASAEKRTQ-KEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHHHHHTSSSCCCH-HHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987654 46999999999999999998887654
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=8.2e-34 Score=255.83 Aligned_cols=197 Identities=15% Similarity=0.216 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccHHHHHH
Q 021552 25 GIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVII 103 (311)
Q Consensus 25 gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~ 103 (311)
+...+....+|..+++||.+++..++++++|+++|++|+|||+.++++.+.+++++|+||||||||+||. |+++++++.
T Consensus 42 ~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~ 121 (254)
T 2f2c_A 42 EIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTY 121 (254)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHST
T ss_pred hcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 3444455789999999999999999999999999999999999999999999999999999999999994 889999875
Q ss_pred HHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHH----HHHHHHHHH
Q 021552 104 VFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE----LRQEAWNLA 179 (311)
Q Consensus 104 v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~----l~~~A~~l~ 179 (311)
++.. .| .+++|++||+.||++|+|++.+++|+.|+.+|++.++.+.+ +.+.|++++
T Consensus 122 ~~~~------------------~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll 181 (254)
T 2f2c_A 122 LSCD------------------CF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTI 181 (254)
T ss_dssp TC---------------------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred HhCC------------------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 4321 22 46899999999999999999999999999999999988643 467899999
Q ss_pred HhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCcccc--------ccccCCHHHHHHHHHHHHHhhcCCCC
Q 021552 180 NDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWW--------KAFDAEKSGIDEVCRVLAHLYSLPKA 245 (311)
Q Consensus 180 ~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~--------~~~~~~~~~l~~~~~~il~ly~~~k~ 245 (311)
++++.+..++.|+|+.||+|||++|....+. ++.|| ...|++.+++.+|++.|.+++.+.+.
T Consensus 182 ~~~l~d~~~~~~~PS~iAaAai~la~~~~~~----~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~~ 251 (254)
T 2f2c_A 182 CKALIQPNIALLSPGLICAGGLLTTIETDNT----NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYDL 251 (254)
T ss_dssp HHHTTSGGGTTSCHHHHHHHHHHHHHHTTCC----SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHcCcchhccCHHHHHHHHHHHHHHhcCC----CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999987521 12233 24589999999999999999876443
No 14
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1.1e-31 Score=241.38 Aligned_cols=200 Identities=13% Similarity=0.102 Sum_probs=168.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccC-cccHHHHHH
Q 021552 25 GIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVII 103 (311)
Q Consensus 25 gi~~~~e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~ 103 (311)
+...+....+|..+++||.+++..+++.++|+++|++|+|||++++.+.+.+.+++|+||||||+|+||. |+++++++.
T Consensus 39 ~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 39 NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3445556789999999999999999999999999999999999999999999999999999999999996 778999887
Q ss_pred HHHHhhhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCHH----HHHHHHHHH
Q 021552 104 VFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE----LRQEAWNLA 179 (311)
Q Consensus 104 v~~~~~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~~----l~~~A~~l~ 179 (311)
.+.. .| .+++|++||..||++|+|++.+++|+.|+.+|++.++.+.+ +...|++++
T Consensus 119 ~~~~------------------~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l 178 (252)
T 1f5q_B 119 LCGG------------------AT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKI 178 (252)
T ss_dssp HHCT------------------TC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhCC------------------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 5432 22 45899999999999999999999999999999999987643 567899999
Q ss_pred HhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCC----ccccccccCCHHHHHHHHHHHHHhhcCCCCcc
Q 021552 180 NDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPEN----PPWWKAFDAEKSGIDEVCRVLAHLYSLPKAKY 247 (311)
Q Consensus 180 ~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~----~~w~~~~~~~~~~l~~~~~~il~ly~~~k~~~ 247 (311)
..++....++.|+|+.||+||+..+. +...++. +.+.+..|++.+++.+|.+.|.+++...++.|
T Consensus 179 ~~~l~d~~~l~~~PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~~~~ 247 (252)
T 1f5q_B 179 FCALCDGRSAMKRPVLITLACMHLTM---NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFDENY 247 (252)
T ss_dssp HHHHHCHHHHTSCHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTH
T ss_pred HHHHhchhhhccCHHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhChhh
Confidence 99998888999999999999965443 3322221 12234578999999999999999887655554
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1e-30 Score=239.08 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhc-CCcccchHHHHHHHHHHHhhhhccC-cccHHHHHHHHHHh
Q 021552 31 ETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCK-RSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRM 108 (311)
Q Consensus 31 e~~~R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~-~s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~v~~~~ 108 (311)
...+|..+++||.+++..++++++|+++|++|+|||+.+ +.+.+.+.+++|+||||||||+||. ++++++++.++..
T Consensus 46 ~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~- 124 (283)
T 1w98_B 46 QPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG- 124 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC-
Confidence 457999999999999999999999999999999999998 6899999999999999999999997 8899999864321
Q ss_pred hhhccCCCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHHHHcCCCH-----------HHHHHHHH
Q 021552 109 ECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL-----------ELRQEAWN 177 (311)
Q Consensus 109 ~~~~~~~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l~~l~~~~-----------~l~~~A~~ 177 (311)
.| .+++|++||+.||++|||++.+++|+.|+.+|++.++.++ .....+.+
T Consensus 125 -----------------~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (283)
T 1w98_B 125 -----------------AC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAE 185 (283)
T ss_dssp -----------------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHH
T ss_pred -----------------CC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHH
Confidence 12 4689999999999999999999999999999999876532 23345677
Q ss_pred HHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC
Q 021552 178 LANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL 242 (311)
Q Consensus 178 l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~~ 242 (311)
+++.++.+..++.|+|+.||+||||+|+. .+.|....|+++++|.+|++.|..++..
T Consensus 186 llelsl~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~tg~~~~~i~~c~~~l~~~~~~ 242 (283)
T 1w98_B 186 LLDLCVLDVDCLEFPYGILAASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVPFAMV 242 (283)
T ss_dssp HHHHHHHSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 88999988889999999999999999863 3568889999999999999999988864
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.97 E-value=2e-29 Score=219.16 Aligned_cols=184 Identities=15% Similarity=0.193 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccC
Q 021552 35 RIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREG 114 (311)
Q Consensus 35 R~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~ 114 (311)
...++++|.++|..|+||+.+..+|..||+||+.++.+++.++..+++||||+|||.|+.|++++|+..++. +
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~-v------ 81 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-V------ 81 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT-S------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC-C------
Confidence 457999999999999999999999999999999999999999999999999999999999999999998654 1
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHcCceeee--cChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCC
Q 021552 115 LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHV--EHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFK 192 (311)
Q Consensus 115 ~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v--~~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~ 192 (311)
.+.+|..+|+.|++.|||++.+ .+|+.||.+|+..+++++++.+.||.+++++..+.++.+++
T Consensus 82 ---------------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~ 146 (200)
T 1ais_B 82 ---------------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKS 146 (200)
T ss_dssp ---------------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSC
T ss_pred ---------------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCC
Confidence 2478889999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 021552 193 SEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 241 (311)
Q Consensus 193 P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~ 241 (311)
|+.||+||||+|++.+|.+.+. ..+....|+++.+|..+.+.+.+...
T Consensus 147 P~~iAaAaly~A~~~~~~~~t~-~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 147 PAGLVAAALYIASLLEGEKRTQ-REVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH-HHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999987643 45888889999999999999988764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-27 Score=221.32 Aligned_cols=183 Identities=13% Similarity=0.138 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccCC
Q 021552 36 IYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGL 115 (311)
Q Consensus 36 ~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~ 115 (311)
..+...|.++|..|+||+.++.+|+.||+||+..+.+++.+...+++||||+|||.|+.|++++|++.++. +
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~-v------- 198 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V------- 198 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS-C-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC-C-------
Confidence 46789999999999999999999999999999999999999999999999999999999999999988543 1
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHcC------------ceeeecChHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 021552 116 PIEHLDLFSKKFSELKMEMSRTERHILKEMG------------FVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 183 (311)
Q Consensus 116 p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~------------F~l~v~~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~ 183 (311)
.+++|.++++.|++.|+ |++.+.+|+.||.+|+..|+++.++.+.||.+++++.
T Consensus 199 --------------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~ 264 (345)
T 3k7a_M 199 --------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCK 264 (345)
T ss_dssp --------------CSHHHHHHHHHHHHHHTCC-----------------------------------------------
T ss_pred --------------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23678889999999998 9999999999999999999999999999999999999
Q ss_pred cCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 021552 184 RTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 241 (311)
Q Consensus 184 ~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly~ 241 (311)
.+.++.+++|..||+||||+|++++|.+.+ .+.|..+.++++..|...+++|.+.+.
T Consensus 265 ~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t-~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 265 EIKEIAGKSPITIAVVSIYLNILLFQIPIT-AAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HhchhcCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765 356999999999999999998887664
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.84 E-value=3.6e-21 Score=180.04 Aligned_cols=182 Identities=13% Similarity=0.138 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccCC
Q 021552 36 IYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGL 115 (311)
Q Consensus 36 ~~~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~ 115 (311)
..+...|.++|..|+||..+..+|..+|++++..+.+++.+...+++||||+|||.++.|++++||..++. +
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~-v------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT-C-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC-C-------
Confidence 56788999999999999999999999999999999999999999999999999999999999999998654 1
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHcCce------------eeecChHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 021552 116 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFV------------CHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 183 (311)
Q Consensus 116 p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~------------l~v~~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~ 183 (311)
.+.+|.+..+.|++.|+.. +...+|..||.+|+..|+++.++.+.|+.+++.+.
T Consensus 199 --------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~ 264 (345)
T 4bbr_M 199 --------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCK 264 (345)
T ss_dssp --------------CTTHHHHHHHHHHHCC--------------------------------------------------
T ss_pred --------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1356777888899999864 67789999999999999999999999999999999
Q ss_pred cCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhh
Q 021552 184 RTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLY 240 (311)
Q Consensus 184 ~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~il~ly 240 (311)
...++.+..|..||+||||+|++++|.+.+. ..--++.++++..|....++|.+..
T Consensus 265 ~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~-~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 265 EIKEIAGKSPITIAVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------------------------
T ss_pred hcccccCCChHHHHHHHHHHHHHHhCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9888999999999999999999999977653 3466777887777777776665544
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.12 E-value=8.9e-06 Score=69.62 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHhhhhccCCCcc
Q 021552 39 CDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIE 118 (311)
Q Consensus 39 ~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~~~~~~~~p~~ 118 (311)
.++|.+++..|+++.++..+|..++++.....-..++++..+|+||||+||+..+.+++.+++..+..-
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 478999999999999999999999999999888889999999999999999999999999999876541
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCcee
Q 021552 119 HLDLFSKKFSELKMEMSRTERHILKEMGFVC 149 (311)
Q Consensus 119 ~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l 149 (311)
...+|...-..|.+.||.++
T Consensus 178 -----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 -----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp -----------CHHHHHHHHHHHHHHHTCCC
T ss_pred -----------CHHHHHHHHHHHHHHcCCCC
Confidence 22566666777778888654
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.68 E-value=0.00031 Score=63.25 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC---CcccchHHHHHHHHHHHhhhhccC-cccHHHHHHHHHHhhhhccC
Q 021552 39 CDLIQESGILLKLPQAVMATGQVLFHRFYCKR---SFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREG 114 (311)
Q Consensus 39 ~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~---s~~~~~~~lva~acLfLA~K~EE~-~~~l~~i~~v~~~~~~~~~~ 114 (311)
.+||.++.+.-+++..++-.|++|++|+..+. .+.....+-+.++||.+|+|+-+. ...-+....+. |
T Consensus 78 ~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--------G 149 (293)
T 2pmi_B 78 FNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--------G 149 (293)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--------T
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhcc--------C
Confidence 46888888999999999999999999998753 345678899999999999999764 33333333331 1
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHcCceeeecChHHHHHHHH
Q 021552 115 LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYL 162 (311)
Q Consensus 115 ~p~~~~~~~~~~y~~~~~~I~~~E~~IL~~L~F~l~v~~P~~~l~~~l 162 (311)
. ..+++-.+|+.+|..|+|++.+. +..|...+.
T Consensus 150 i--------------sl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~ 182 (293)
T 2pmi_B 150 V--------------RCHELNILENDFLKRVNYRIIPR-DHNITLCSI 182 (293)
T ss_dssp S--------------CHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHH
T ss_pred c--------------CHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHH
Confidence 1 24789999999999999999876 444443333
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.63 E-value=0.00019 Score=61.64 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHH
Q 021552 39 CDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH 106 (311)
Q Consensus 39 ~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~ 106 (311)
.++|.+.+..|+++.++..+|..+++.-+...-..++.+..+|+||+|+||+..+.+++.+++..++.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~ 170 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAG 170 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhC
Confidence 57889999999999999999999999999887788999999999999999999999999998876543
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.72 E-value=0.0039 Score=57.78 Aligned_cols=91 Identities=9% Similarity=0.025 Sum_probs=75.7
Q ss_pred ecChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHH
Q 021552 151 VEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGID 230 (311)
Q Consensus 151 v~~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~ 230 (311)
....+..|.+++..|++++.+...|..+....+...+.-..+...||+||||+|++..+.+..- .+....++++..+|.
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl-~eI~~~~~v~~keig 204 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF-KEIQSLIHVKTKEFG 204 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH-HHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH-HHHHHHhCCCHHHHH
Confidence 3557888999999999999999999999999887777778899999999999999999976543 246667788999999
Q ss_pred HHHHHHHHhhcC
Q 021552 231 EVCRVLAHLYSL 242 (311)
Q Consensus 231 ~~~~~il~ly~~ 242 (311)
.+.+.|......
T Consensus 205 r~~k~l~~~L~l 216 (345)
T 4bbr_M 205 KTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHhCc
Confidence 999888876653
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=96.18 E-value=0.025 Score=49.18 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCccccc-CChHHHHHHHHHHHHHHcCCCCCCC-------ccccccccCCH
Q 021552 155 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVR-FKSEVVACGVVYAAARRFQIPLPEN-------PPWWKAFDAEK 226 (311)
Q Consensus 155 ~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~-~~P~~IA~AaI~lA~~~~~~~lp~~-------~~w~~~~~~~~ 226 (311)
.++|......+++++++...|..++...+....... +++..||+||+|+|++..+.+.+-. .-|-+.+.++.
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 467888999999999999999999988876666667 9999999999999999988654311 01112245788
Q ss_pred HHHHHHHHHHHHhhc
Q 021552 227 SGIDEVCRVLAHLYS 241 (311)
Q Consensus 227 ~~l~~~~~~il~ly~ 241 (311)
++|..+-..|+....
T Consensus 112 ~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 112 SNISEIEFEIISVLD 126 (235)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 899888888887764
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0035 Score=58.07 Aligned_cols=88 Identities=8% Similarity=0.023 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHH
Q 021552 153 HPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEV 232 (311)
Q Consensus 153 ~P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~ 232 (311)
..+..|..++..|++++.+...|..+....+.....-..+...||+||||+|++..+.+..- .+....++++..+|..+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl-~ei~~~~~v~~keIgr~ 206 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF-KEIQSLIHVKTKEFGKT 206 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCH-HHHHHSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccH-HHHHHHHCCCHHHHHHH
Confidence 56788999999999999999999999999887777778899999999999999988875332 34666778888999999
Q ss_pred HHHHHHhhc
Q 021552 233 CRVLAHLYS 241 (311)
Q Consensus 233 ~~~il~ly~ 241 (311)
.+.|++...
T Consensus 207 ~~~l~~~L~ 215 (345)
T 3k7a_M 207 LNIMKNILR 215 (345)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888887765
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.044 Score=49.17 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCcc----------------c
Q 021552 155 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPP----------------W 218 (311)
Q Consensus 155 ~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~----------------w 218 (311)
.++|......+++++++...|..++...+....+-.+++..||+||+|+|++..+.+.|.-.+ +
T Consensus 47 ~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~ 126 (285)
T 3rgf_B 47 TNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAF 126 (285)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccC
Confidence 357888888999999999999999999887777778999999999999999998876652111 1
Q ss_pred cccccCCHHHHHHHHHHHHHhh
Q 021552 219 WKAFDAEKSGIDEVCRVLAHLY 240 (311)
Q Consensus 219 ~~~~~~~~~~l~~~~~~il~ly 240 (311)
-+.+..+.++|.++-..|+...
T Consensus 127 ~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 127 PKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHc
Confidence 1122345677777777776654
No 26
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.29 E-value=0.11 Score=47.58 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCC-------H
Q 021552 156 KFISNYLATLE--TPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAE-------K 226 (311)
Q Consensus 156 ~~l~~~l~~l~--~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~-------~ 226 (311)
.+|..++..++ +++++...|..++...+.......++|..||+||+|+|++..+.+.+- .+.-..+..+ .
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l-~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSS-PQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCH-HHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCH-HHHHHHhccChhhhHHHH
Confidence 46778888899 999999999999999888777789999999999999999999876431 1222222223 4
Q ss_pred HHHHHHHHHHHHhhc
Q 021552 227 SGIDEVCRVLAHLYS 241 (311)
Q Consensus 227 ~~l~~~~~~il~ly~ 241 (311)
++|..+-..|+....
T Consensus 141 ~~Il~~E~~iL~~L~ 155 (323)
T 1jkw_A 141 EQILEYELLLIQQLN 155 (323)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 567777766766553
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=95.01 E-value=0.099 Score=46.36 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~~ 233 (311)
++|......++++.+....|..++...+.....-......||+||+++|++..+...|.-.+..... .++.++|..+-
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 4677778888899999999999998877655566778999999999999999887544322233222 26788888888
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|+....
T Consensus 123 ~~IL~~L~ 130 (269)
T 2b9r_A 123 MKILRALN 130 (269)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88877654
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=94.68 E-value=0.1 Score=45.84 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCC
Q 021552 155 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 211 (311)
Q Consensus 155 ~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~ 211 (311)
.++|......+++++++...|..++...+.....-.+++..||+||+|+|++..+.+
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p 91 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQA 91 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCC
Confidence 467888889999999999999999998887667778999999999999999998874
No 29
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.48 E-value=0.12 Score=45.31 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCC
Q 021552 155 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 211 (311)
Q Consensus 155 ~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~ 211 (311)
.++|......+++++++...|..++...+.....-.+++..||+||+|+|++..+.+
T Consensus 45 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~ 101 (258)
T 2i53_A 45 ARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETP 101 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccc
Confidence 357888899999999999999999998887666778999999999999999998864
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=94.29 E-value=0.1 Score=45.95 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~~ 233 (311)
+++......++++.+....|..++...+...-.-......+|+||+++|++..+...|.-.+..... .++.+++..+-
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 4566677777888888888888887766544444566789999999999999987444322233233 36788999988
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|+....
T Consensus 124 ~~iL~~L~ 131 (260)
T 2cch_B 124 HLVLKVLT 131 (260)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88888764
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.22 E-value=0.14 Score=44.95 Aligned_cols=86 Identities=8% Similarity=0.002 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~~ 233 (311)
+++......+++..+...+|..++...+.....-......||+||+++|++..+...|.-.+..... .++.++|..+-
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 135 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 5667777888899999999999998877665556677889999999999999876444322232222 36888998888
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|++...
T Consensus 136 ~~iL~~L~ 143 (257)
T 1g3n_C 136 KELLEKLA 143 (257)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88887764
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=94.11 E-value=0.22 Score=43.68 Aligned_cols=86 Identities=3% Similarity=-0.089 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~~ 233 (311)
+++......+++..+....|..++...+.....-......||+||+++|++..+...|.-.+.-... .++.+++..+-
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4566777788888889999999998877665566788999999999999999876444322232222 36888999999
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|++...
T Consensus 137 ~~IL~~L~ 144 (254)
T 2f2c_A 137 KDILEALK 144 (254)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 98888764
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.98 E-value=0.18 Score=45.64 Aligned_cols=86 Identities=6% Similarity=-0.075 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~~ 233 (311)
++|......++++.+...+|..++...+.....-......||++|+++|++..+...|.-....... .++.++|.++-
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 4566677778888888889998888877655566788999999999999999776544323333222 26788888888
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|+....
T Consensus 156 ~~IL~~L~ 163 (306)
T 3g33_B 156 VLVLGKLK 163 (306)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88876654
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=93.85 E-value=0.13 Score=47.71 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCC
Q 021552 155 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 211 (311)
Q Consensus 155 ~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~ 211 (311)
.++|......+++++++...|..++...+....+-.+++..||+||+|+|++..+.+
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 457788888899999999999999998887767778999999999999999998764
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=93.74 E-value=0.24 Score=43.79 Aligned_cols=86 Identities=7% Similarity=-0.010 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCcccccc--ccCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKA--FDAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~--~~~~~~~l~~~~ 233 (311)
+++......++++.+....|..++...+...-.-......||+||+|+|++..+...|.-...-.. ..++.++|..+-
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 456666677888888888999998887765555677899999999999999988732221122222 236888999888
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|++...
T Consensus 142 ~~IL~~L~ 149 (271)
T 2w96_A 142 LLLVNKLK 149 (271)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88887764
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.51 E-value=0.24 Score=44.22 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcC-cccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRT-TLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEV 232 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t-~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~--~~~~~~l~~~ 232 (311)
+++......+++..+....|..++...+.. ...-......+|+||+++|++..+...|.-.+.-... .++.++|..+
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 456667777888888888999888877654 3445678889999999999999887544322233333 3678999999
Q ss_pred HHHHHHhhc
Q 021552 233 CRVLAHLYS 241 (311)
Q Consensus 233 ~~~il~ly~ 241 (311)
-..|+....
T Consensus 135 E~~IL~~L~ 143 (283)
T 1w98_B 135 ELMIMKALK 143 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 988888764
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=90.69 E-value=0.72 Score=34.22 Aligned_cols=55 Identities=5% Similarity=0.099 Sum_probs=42.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcCC-----cccchHHHHHHHHHHHhhhhccCccc
Q 021552 42 IQESGILLKLPQAVMATGQVLFHRFYCKRS-----FARFDVKIVAASSVWLASKLEESPRK 97 (311)
Q Consensus 42 I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s-----~~~~~~~lva~acLfLA~K~EE~~~~ 97 (311)
|.++|..|++.. +...|-.++++|-..-. -.+++.-.+++||+|.|||.-.....
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVd 65 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVD 65 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCC
Confidence 678999999987 77788899999975321 22455668899999999999875443
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=90.45 E-value=1.2 Score=37.60 Aligned_cols=66 Identities=20% Similarity=0.131 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCC---cccchHHHHHHHHHHHhhhhccCcccHHHHHH
Q 021552 38 GCDLIQESGILLKLPQAVMATGQVLFHRFYCKRS---FARFDVKIVAASSVWLASKLEESPRKARQVII 103 (311)
Q Consensus 38 ~~~~I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~s---~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~ 103 (311)
+.+-|+.+.++-++|..++..|+.+-+.|.-.+. .+-...+.|++||+.+|+---..|.++.++..
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~ 83 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRC 83 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHH
Confidence 4455688999999999999999999999976532 33456789999999999977778999888754
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=90.32 E-value=0.72 Score=40.44 Aligned_cols=86 Identities=9% Similarity=-0.112 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccCChHHHHHHHHHHHHHHcCCCCCCCccccc--cccCCHHHHHHHH
Q 021552 156 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWK--AFDAEKSGIDEVC 233 (311)
Q Consensus 156 ~~l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~--~~~~~~~~l~~~~ 233 (311)
+++......+++..+....|.+++...+.....-......||++|+++|++..+...|.-...-. ...++.+++.++-
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE 133 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLE 133 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 45666677788888888899988887765444455678899999999999998865443222221 2246888999988
Q ss_pred HHHHHhhc
Q 021552 234 RVLAHLYS 241 (311)
Q Consensus 234 ~~il~ly~ 241 (311)
..|++...
T Consensus 134 ~~IL~~L~ 141 (252)
T 1f5q_B 134 VKSLDTLS 141 (252)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88888764
No 40
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=83.44 E-value=5.1 Score=35.81 Aligned_cols=88 Identities=3% Similarity=-0.096 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhhhc-Cc-cc-ccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHH
Q 021552 154 PHKFISNYLATLETPLELRQEAWNLANDSLR-TT-LC-VRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGID 230 (311)
Q Consensus 154 P~~~l~~~l~~l~~~~~l~~~A~~l~~ds~~-t~-~~-l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~ 230 (311)
-++|+.++.+.-.++..+.-.|..++..... .+ .. -.....-+-++|+.+|.+.+.-....+..|-++.|++.+|++
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHH
Confidence 4788888888888888777777666665443 12 22 246788999999999999998777777889999999999999
Q ss_pred HHHHHHHHhhc
Q 021552 231 EVCRVLAHLYS 241 (311)
Q Consensus 231 ~~~~~il~ly~ 241 (311)
.+-.+.+.+..
T Consensus 157 ~LE~eFL~lLd 167 (293)
T 2pmi_B 157 ILENDFLKRVN 167 (293)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHcC
Confidence 99998887643
No 41
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=81.23 E-value=7.2 Score=28.77 Aligned_cols=79 Identities=9% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhcC-----cccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHH
Q 021552 161 YLATLETPLELRQEAWNLANDSLRT-----TLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRV 235 (311)
Q Consensus 161 ~l~~l~~~~~l~~~A~~l~~ds~~t-----~~~l~~~P~~IA~AaI~lA~~~~~~~lp~~~~w~~~~~~~~~~l~~~~~~ 235 (311)
++-.++..+ +...|..+++.--.. ...+.++-..-++||+|.|++.+...++..+ .....|+.+.+.+.++..
T Consensus 9 LcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~K-L~~~s~lk~~~f~~l~~~ 86 (95)
T 3m03_A 9 LAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNK-MVATSGVKKAIFDRLCKQ 86 (95)
T ss_dssp HHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHH-HHHTTCBCHHHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHH-HHHHHCCCHHHHHHHHHH
Confidence 334444433 444555555432111 1245667778899999999999998876533 556678888898888888
Q ss_pred HHHhhc
Q 021552 236 LAHLYS 241 (311)
Q Consensus 236 il~ly~ 241 (311)
+-.+-.
T Consensus 87 ~e~~~~ 92 (95)
T 3m03_A 87 LEKIGQ 92 (95)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776653
No 42
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=78.03 E-value=7.5 Score=36.42 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhhc--CCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHH
Q 021552 38 GCDLIQESGILLKLPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH 106 (311)
Q Consensus 38 ~~~~I~~v~~~L~L~~-~t~~tA~~~~~Rf~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~ 106 (311)
+..=|+++|.+|+++. +....--++|+..+.. .-+.+.++.-+.+.|+|.-||+.....+.++|+..+.
T Consensus 282 Aa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 4555789999998875 4444555566665543 4567889999999999999999998899999998654
No 43
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=77.78 E-value=7.8 Score=35.48 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhhc--CCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHH
Q 021552 38 GCDLIQESGILLKLPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH 106 (311)
Q Consensus 38 ~~~~I~~v~~~L~L~~-~t~~tA~~~~~Rf~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~ 106 (311)
+..=|.++|..|+++. +......++|+..+.. .-+.+.+..-+.+.|+|.-||+.....+.++|+..+.
T Consensus 218 a~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 218 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3444889999998775 4555677777777653 4567889999999999999999998899999998654
No 44
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=75.14 E-value=8.3 Score=34.66 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcC---CcccchHHHHHHHHHHHhhhhcc-CcccHHHHHHHH
Q 021552 42 IQESGILLKLPQAVMATGQVLFHRFYCKR---SFARFDVKIVAASSVWLASKLEE-SPRKARQVIIVF 105 (311)
Q Consensus 42 I~~v~~~L~L~~~t~~tA~~~~~Rf~~~~---s~~~~~~~lva~acLfLA~K~EE-~~~~l~~i~~v~ 105 (311)
..++|+.|+++..|...|...|++.-..- +-...+....-.||||.||...+ ...++..++..+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 35789999999999999999999976641 11222344455566999997654 567888887654
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=70.61 E-value=16 Score=36.28 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhhhc--CCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHHHHh
Q 021552 38 GCDLIQESGILLKLPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM 108 (311)
Q Consensus 38 ~~~~I~~v~~~L~L~~-~t~~tA~~~~~Rf~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~~~~ 108 (311)
+..=|.++|.+|+++. ......-++|+..+.. .-+.+.+..-+.+.|+|.-||+.....+.++|+..+.+.
T Consensus 527 Aa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~q 600 (656)
T 4elj_A 527 AYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDL 600 (656)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHhC
Confidence 4566889999998774 4555677777777654 456788999999999999999999899999999876543
No 46
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=66.22 E-value=24 Score=32.21 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeec--------Ch-------------------HHHHHHHHHHcCCC-HHHHHHHHHHH
Q 021552 128 SELKMEMSRTERHILKEMGFVCHVE--------HP-------------------HKFISNYLATLETP-LELRQEAWNLA 179 (311)
Q Consensus 128 ~~~~~~I~~~E~~IL~~L~F~l~v~--------~P-------------------~~~l~~~l~~l~~~-~~l~~~A~~l~ 179 (311)
.++++.+-.+|..||+.|-|.-.-+ .+ ..-+..+|+.|+.. .++.+.+|.++
T Consensus 165 relvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~f 244 (347)
T 2r7g_A 165 REMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLF 244 (347)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3577899999999999999964321 11 12244555666544 46888899999
Q ss_pred Hhhhc--CcccccCChHHHHHHHHHHHHHHcCCCC
Q 021552 180 NDSLR--TTLCVRFKSEVVACGVVYAAARRFQIPL 212 (311)
Q Consensus 180 ~ds~~--t~~~l~~~P~~IA~AaI~lA~~~~~~~l 212 (311)
+.++. +.++....-.+|-++|||..++..+..+
T Consensus 245 e~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~ 279 (347)
T 2r7g_A 245 QHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 279 (347)
T ss_dssp HHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCC
Confidence 88875 6788888999999999999999988643
No 47
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=60.17 E-value=22 Score=35.34 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhc-----CCcccchHHHHHHHHHHHhhhhccCcccHHHHHHHH
Q 021552 42 IQESGILLKLPQAVMATGQVLFHRFYCK-----RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVF 105 (311)
Q Consensus 42 I~~v~~~L~L~~~t~~tA~~~~~Rf~~~-----~s~~~~~~~lva~acLfLA~K~EE~~~~l~~i~~v~ 105 (311)
..++|+.|++...|...|...|...-.. .++.+...+..|. .++.||.+|+...++..++..+
T Consensus 8 f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 8 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHh
Confidence 4578999999999999999999998842 2344555555444 4777777888888888887654
No 48
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=49.22 E-value=54 Score=27.66 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhcC--cc-cccCChHHHHHHHHHHHHHHcCCCCCC
Q 021552 158 ISNYLATLETPLELRQEAWNLANDSLRT--TL-CVRFKSEVVACGVVYAAARRFQIPLPE 214 (311)
Q Consensus 158 l~~~l~~l~~~~~l~~~A~~l~~ds~~t--~~-~l~~~P~~IA~AaI~lA~~~~~~~lp~ 214 (311)
+.+.-++-..++.+...|..++.-..-- .. --.-.|..+|+||+.+|+...+.|+|-
T Consensus 19 lr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~Pipl 78 (260)
T 3h4c_A 19 MRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPL 78 (260)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccH
Confidence 4555566677888888777777654321 11 112368899999999999999999883
No 49
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=44.58 E-value=18 Score=25.34 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=20.2
Q ss_pred CCCCCCcCCCCCcccCCCCCCcchhhhc
Q 021552 281 QANNHTTFPIEALVPINPESGGSKVKQH 308 (311)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (311)
++++.-+.+..+.+|..+.-||.|.||.
T Consensus 6 p~~~~~~~~~~~~gPttprkGPPKFKQR 33 (87)
T 2ju4_A 6 PKAECRSATRVMGGPCTPRKGPPKCKQR 33 (87)
T ss_dssp CCCCCTTCSSSSCSSCCCSSSSCCCSSC
T ss_pred CCcccccCCccCCCCCCCCCCCCccchh
Confidence 3444444566677888899999998885
No 50
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=36.66 E-value=27 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCce
Q 021552 132 MEMSRTERHILKEMGFV 148 (311)
Q Consensus 132 ~~I~~~E~~IL~~L~F~ 148 (311)
++|.++|..|-++|.||
T Consensus 13 qeikelennirkalsfd 29 (31)
T 2wh0_Q 13 QEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 67888999999999997
No 51
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=36.36 E-value=56 Score=30.52 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHHHcCCC-HHHHHHHHHHHHhhhc--CcccccCChHHHHHHHHHHHHHHcCCCC
Q 021552 158 ISNYLATLETP-LELRQEAWNLANDSLR--TTLCVRFKSEVVACGVVYAAARRFQIPL 212 (311)
Q Consensus 158 l~~~l~~l~~~-~~l~~~A~~l~~ds~~--t~~~l~~~P~~IA~AaI~lA~~~~~~~l 212 (311)
|..+|..|+.. .++....|.+.+-++. +.++....=.+|-++|||.-+++.+.++
T Consensus 286 l~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~ 343 (411)
T 4ell_A 286 LNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 343 (411)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCC
Confidence 34456667654 4788899999988874 5788888899999999999999887653
No 52
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=33.28 E-value=75 Score=28.33 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhcCcccccC---ChHHHHHHHHHHHHHHc
Q 021552 158 ISNYLATLETPLELRQEAWNLANDSLRTTLCVRF---KSEVVACGVVYAAARRF 208 (311)
Q Consensus 158 l~~~l~~l~~~~~l~~~A~~l~~ds~~t~~~l~~---~P~~IA~AaI~lA~~~~ 208 (311)
...+|+.|+++..+.+.||...+.+-..+.++.+ .....-+||+|+|+...
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~ 59 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDL 59 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhcc
Confidence 4567889999999999999999987653322223 36677778899998654
Done!