Query 021554
Match_columns 311
No_of_seqs 173 out of 1230
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.4 1.5E-13 3.2E-18 134.7 5.4 70 224-302 135-213 (371)
2 PLN03165 chaperone protein dna 99.2 8.3E-12 1.8E-16 104.6 5.0 77 215-301 24-101 (111)
3 PRK14296 chaperone protein Dna 99.1 2.7E-11 5.9E-16 118.1 4.3 97 190-309 124-230 (372)
4 PRK14282 chaperone protein Dna 99.1 5.2E-11 1.1E-15 115.8 4.4 98 189-309 126-233 (369)
5 PRK14298 chaperone protein Dna 99.1 7.2E-11 1.6E-15 115.4 4.5 97 190-309 116-222 (377)
6 PRK14278 chaperone protein Dna 99.1 8E-11 1.7E-15 115.0 3.9 98 189-309 113-220 (378)
7 PRK14281 chaperone protein Dna 99.0 1.6E-10 3.5E-15 113.5 4.0 97 190-309 138-243 (397)
8 PRK14276 chaperone protein Dna 99.0 1.9E-10 4E-15 112.4 4.3 97 190-309 121-227 (380)
9 TIGR02349 DnaJ_bact chaperone 99.0 1.9E-10 4.2E-15 110.7 4.3 98 189-309 117-224 (354)
10 PRK14277 chaperone protein Dna 99.0 1.9E-10 4E-15 112.6 4.1 97 190-309 130-236 (386)
11 PRK14286 chaperone protein Dna 99.0 1.7E-10 3.6E-15 112.6 3.6 93 190-309 125-227 (372)
12 PRK14279 chaperone protein Dna 99.0 2E-10 4.2E-15 112.9 4.0 93 190-309 148-250 (392)
13 PTZ00037 DnaJ_C chaperone prot 99.0 2.3E-10 5E-15 113.8 4.3 98 189-309 124-232 (421)
14 PRK14280 chaperone protein Dna 99.0 2.6E-10 5.6E-15 111.3 4.5 97 190-309 118-224 (376)
15 PRK14290 chaperone protein Dna 99.0 3.6E-10 7.8E-15 109.8 4.7 89 190-301 124-220 (365)
16 PRK14301 chaperone protein Dna 99.0 2.5E-10 5.5E-15 111.3 3.6 94 189-309 118-221 (373)
17 PRK10767 chaperone protein Dna 99.0 3.6E-10 7.8E-15 109.7 4.4 94 189-309 116-219 (371)
18 PRK14293 chaperone protein Dna 99.0 2.9E-10 6.4E-15 110.7 3.4 97 190-309 118-224 (374)
19 PRK14297 chaperone protein Dna 99.0 4.9E-10 1.1E-14 109.4 4.9 89 189-300 122-219 (380)
20 PRK14285 chaperone protein Dna 99.0 3.3E-10 7.2E-15 110.2 3.5 94 189-309 120-223 (365)
21 PRK14284 chaperone protein Dna 99.0 3.2E-10 6.9E-15 111.2 3.3 93 190-309 133-235 (391)
22 PRK14288 chaperone protein Dna 99.0 4.7E-10 1E-14 109.3 4.3 94 189-309 114-216 (369)
23 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.9 7.1E-10 1.5E-14 83.9 3.8 56 234-296 1-66 (66)
24 PRK14300 chaperone protein Dna 98.9 5.9E-10 1.3E-14 108.7 4.2 94 189-309 119-222 (372)
25 PRK14287 chaperone protein Dna 98.9 6.8E-10 1.5E-14 108.3 4.6 89 189-300 112-209 (371)
26 PRK14294 chaperone protein Dna 98.9 6.3E-10 1.4E-14 108.1 4.3 94 189-309 118-221 (366)
27 PRK14295 chaperone protein Dna 98.9 6.2E-10 1.3E-14 109.3 4.1 93 190-309 141-243 (389)
28 PRK14289 chaperone protein Dna 98.9 6.6E-10 1.4E-14 108.5 4.2 97 190-309 129-235 (386)
29 PRK14283 chaperone protein Dna 98.9 1.1E-09 2.4E-14 106.8 3.7 88 190-300 121-217 (378)
30 PRK14292 chaperone protein Dna 98.9 1.3E-09 2.8E-14 105.9 3.8 98 189-309 113-221 (371)
31 PRK14291 chaperone protein Dna 98.9 1.6E-09 3.6E-14 105.9 4.1 93 190-309 131-232 (382)
32 KOG2813 Predicted molecular ch 98.4 9E-08 1.9E-12 93.2 2.2 64 230-300 186-270 (406)
33 KOG0712 Molecular chaperone (D 98.3 4E-07 8.6E-12 89.0 2.9 91 188-300 100-200 (337)
34 COG1107 Archaea-specific RecJ- 98.1 1.6E-06 3.5E-11 89.8 3.7 70 232-301 3-83 (715)
35 COG0484 DnaJ DnaJ-class molecu 97.7 2.1E-05 4.6E-10 77.9 3.4 75 189-287 116-209 (371)
36 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.7 4.7E-05 1E-09 57.6 3.7 39 245-299 1-54 (66)
37 COG1107 Archaea-specific RecJ- 97.3 0.00015 3.2E-09 75.7 3.5 45 230-292 17-86 (715)
38 PRK14279 chaperone protein Dna 96.9 0.00061 1.3E-08 67.4 3.0 43 242-300 173-226 (392)
39 PRK14284 chaperone protein Dna 96.8 0.00075 1.6E-08 66.7 2.4 43 242-300 158-211 (391)
40 PRK14296 chaperone protein Dna 96.7 0.001 2.2E-08 65.5 2.9 42 243-300 150-206 (372)
41 PRK14300 chaperone protein Dna 96.6 0.0013 2.9E-08 64.5 3.0 39 230-287 161-210 (372)
42 PRK14301 chaperone protein Dna 96.6 0.0013 2.8E-08 64.7 2.8 42 243-300 145-197 (373)
43 PRK14282 chaperone protein Dna 96.6 0.0014 2.9E-08 64.3 2.9 42 243-300 153-209 (369)
44 PRK10767 chaperone protein Dna 96.6 0.0014 3E-08 64.1 2.9 43 242-300 142-195 (371)
45 PRK14295 chaperone protein Dna 96.6 0.0015 3.1E-08 64.7 2.9 43 242-300 166-219 (389)
46 PRK14286 chaperone protein Dna 96.6 0.0015 3.3E-08 64.2 3.1 42 243-300 151-203 (372)
47 PRK14278 chaperone protein Dna 96.6 0.0016 3.5E-08 64.2 3.1 38 231-287 156-208 (378)
48 PRK14298 chaperone protein Dna 96.5 0.0014 3.1E-08 64.6 2.6 38 231-287 158-210 (377)
49 PRK14297 chaperone protein Dna 96.5 0.0015 3.3E-08 64.2 2.7 42 243-300 149-205 (380)
50 PTZ00037 DnaJ_C chaperone prot 96.5 0.0015 3.3E-08 65.6 2.6 41 243-300 151-206 (421)
51 PRK14285 chaperone protein Dna 96.5 0.0017 3.6E-08 63.8 2.8 38 231-287 163-211 (365)
52 PRK14276 chaperone protein Dna 96.5 0.0014 3E-08 64.6 2.2 43 242-300 146-203 (380)
53 KOG2824 Glutaredoxin-related p 96.5 0.0026 5.6E-08 61.2 3.8 55 228-293 226-280 (281)
54 PRK14288 chaperone protein Dna 96.5 0.0018 4E-08 63.5 2.9 41 243-300 141-192 (369)
55 PRK14280 chaperone protein Dna 96.4 0.0019 4.1E-08 63.5 2.8 38 231-287 160-212 (376)
56 PRK14287 chaperone protein Dna 96.4 0.0018 3.9E-08 63.7 2.2 42 243-300 139-195 (371)
57 TIGR02642 phage_xxxx uncharact 96.4 0.0023 5.1E-08 58.3 2.8 14 242-255 99-112 (186)
58 PRK14289 chaperone protein Dna 96.4 0.0021 4.7E-08 63.2 2.7 39 230-287 170-223 (386)
59 PRK14294 chaperone protein Dna 96.3 0.0025 5.5E-08 62.4 2.9 42 243-300 145-197 (366)
60 PRK14277 chaperone protein Dna 96.3 0.0025 5.4E-08 62.9 2.8 43 242-300 155-212 (386)
61 PRK14281 chaperone protein Dna 96.2 0.003 6.5E-08 62.6 3.0 42 242-300 163-219 (397)
62 KOG2813 Predicted molecular ch 96.2 0.0028 6.1E-08 62.5 2.6 53 243-299 188-258 (406)
63 PRK14290 chaperone protein Dna 96.2 0.0034 7.4E-08 61.5 3.0 38 231-287 165-217 (365)
64 TIGR02349 DnaJ_bact chaperone 96.2 0.0035 7.5E-08 60.9 3.0 38 231-287 160-212 (354)
65 PRK14291 chaperone protein Dna 96.0 0.0042 9.1E-08 61.3 2.8 41 242-298 156-207 (382)
66 PRK14293 chaperone protein Dna 96.0 0.0042 9.1E-08 61.0 2.8 38 231-287 160-212 (374)
67 PRK14283 chaperone protein Dna 95.9 0.0054 1.2E-07 60.4 2.8 42 242-299 146-202 (378)
68 PRK14292 chaperone protein Dna 95.8 0.0064 1.4E-07 59.5 3.0 38 231-287 157-209 (371)
69 KOG0715 Molecular chaperone (D 95.7 0.0039 8.4E-08 59.8 0.9 66 226-302 159-233 (288)
70 TIGR02642 phage_xxxx uncharact 95.4 0.011 2.3E-07 54.0 2.7 26 231-256 99-129 (186)
71 cd03031 GRX_GRX_like Glutaredo 95.3 0.019 4.1E-07 50.3 3.8 50 230-289 98-147 (147)
72 PLN03165 chaperone protein dna 94.1 0.041 8.8E-07 46.6 2.7 24 231-254 75-98 (111)
73 KOG0712 Molecular chaperone (D 88.3 0.25 5.4E-06 49.0 1.6 73 183-287 110-198 (337)
74 PRK03564 formate dehydrogenase 85.4 0.98 2.1E-05 44.3 4.0 23 288-310 254-276 (309)
75 cd03031 GRX_GRX_like Glutaredo 81.9 1.3 2.9E-05 38.8 3.0 13 242-254 99-111 (147)
76 TIGR00595 priA primosomal prot 80.4 1.6 3.5E-05 44.9 3.5 56 223-295 205-262 (505)
77 COG1198 PriA Primosomal protei 80.2 1.6 3.5E-05 47.3 3.6 55 223-295 427-484 (730)
78 PF07092 DUF1356: Protein of u 79.4 0.79 1.7E-05 43.6 0.8 29 274-302 26-54 (238)
79 TIGR01562 FdhE formate dehydro 78.2 2 4.4E-05 42.0 3.2 23 288-310 254-276 (305)
80 TIGR00630 uvra excinuclease AB 76.9 2 4.2E-05 47.8 3.0 20 74-93 427-446 (924)
81 KOG0715 Molecular chaperone (D 76.3 1.4 3E-05 42.6 1.5 43 243-301 165-218 (288)
82 KOG2824 Glutaredoxin-related p 76.0 2.2 4.7E-05 41.6 2.7 12 288-299 264-275 (281)
83 TIGR00630 uvra excinuclease AB 75.2 1.7 3.6E-05 48.3 1.9 25 275-299 736-772 (924)
84 PF13901 DUF4206: Domain of un 71.9 2.5 5.4E-05 38.6 1.9 50 230-293 141-196 (202)
85 PRK05580 primosome assembly pr 71.6 4.5 9.7E-05 43.1 4.0 51 228-295 378-430 (679)
86 PRK00295 hypothetical protein; 71.3 14 0.0003 28.6 5.6 53 79-133 16-68 (68)
87 PRK00349 uvrA excinuclease ABC 70.9 3.3 7.1E-05 46.2 2.9 20 74-93 429-448 (943)
88 PRK00349 uvrA excinuclease ABC 68.8 2.6 5.6E-05 47.0 1.6 26 275-300 738-775 (943)
89 PRK14873 primosome assembly pr 68.0 6.5 0.00014 42.2 4.3 55 223-295 375-431 (665)
90 PLN02643 ADP-glucose phosphory 66.6 31 0.00066 34.0 8.4 112 37-155 67-197 (336)
91 PF04216 FdhE: Protein involve 66.6 2.1 4.6E-05 40.7 0.3 36 275-310 211-262 (290)
92 PF07092 DUF1356: Protein of u 64.6 3 6.4E-05 39.8 0.9 24 233-256 29-52 (238)
93 COG0178 UvrA Excinuclease ATPa 62.1 6.7 0.00015 43.6 3.1 23 67-90 415-437 (935)
94 PRK00846 hypothetical protein; 62.1 33 0.00072 27.5 6.3 52 80-133 25-77 (77)
95 PRK00736 hypothetical protein; 61.6 28 0.0006 26.9 5.6 53 79-133 16-68 (68)
96 PRK00635 excinuclease ABC subu 60.5 6.6 0.00014 46.7 2.9 26 67-93 1326-1351(1809)
97 COG3058 FdhE Uncharacterized p 60.3 1.7 3.7E-05 42.5 -1.5 35 275-309 225-275 (308)
98 PRK00635 excinuclease ABC subu 59.9 4.7 0.0001 47.9 1.6 22 233-254 722-752 (1809)
99 PRK04023 DNA polymerase II lar 57.2 8.1 0.00018 43.7 2.7 45 230-294 625-671 (1121)
100 TIGR02098 MJ0042_CXXC MJ0042 f 56.8 12 0.00027 24.9 2.6 12 243-254 3-14 (38)
101 PRK14892 putative transcriptio 54.9 14 0.00031 30.8 3.2 36 274-309 20-65 (99)
102 PRK11720 galactose-1-phosphate 54.9 23 0.0005 35.0 5.3 78 18-99 52-139 (346)
103 PRK04406 hypothetical protein; 54.5 41 0.00088 26.6 5.6 48 84-133 27-75 (75)
104 PRK14714 DNA polymerase II lar 54.5 13 0.00029 42.9 3.9 44 231-294 667-717 (1337)
105 KOG3088 Secretory carrier memb 54.4 57 0.0012 32.4 7.7 34 124-157 96-140 (313)
106 COG0178 UvrA Excinuclease ATPa 53.3 7.8 0.00017 43.1 1.8 24 276-299 731-766 (935)
107 PF03589 Antiterm: Antitermina 52.2 5.4 0.00012 32.7 0.4 39 243-287 6-44 (95)
108 PF04102 SlyX: SlyX; InterPro 51.3 36 0.00077 26.1 4.7 55 77-133 13-69 (69)
109 PF13719 zinc_ribbon_5: zinc-r 50.9 13 0.00028 25.3 2.0 13 243-255 3-15 (37)
110 PRK09710 lar restriction allev 50.5 9.6 0.00021 29.8 1.4 17 287-303 28-44 (64)
111 PRK02119 hypothetical protein; 48.8 77 0.0017 24.8 6.3 50 82-133 23-73 (73)
112 PF07295 DUF1451: Protein of u 48.0 13 0.00027 32.9 2.0 28 74-101 3-30 (146)
113 KOG2090 Metalloendopeptidase f 47.8 19 0.00042 38.9 3.6 34 69-106 299-332 (704)
114 cd00608 GalT Galactose-1-phosp 47.4 45 0.00098 32.4 5.9 77 18-97 40-125 (329)
115 PRK13130 H/ACA RNA-protein com 45.6 14 0.00031 28.0 1.7 33 276-311 6-39 (56)
116 PRK02793 phi X174 lysis protei 44.9 97 0.0021 24.1 6.3 49 83-133 23-72 (72)
117 COG2260 Predicted Zn-ribbon RN 43.9 16 0.00036 28.1 1.8 32 277-311 7-39 (59)
118 PRK12380 hydrogenase nickel in 42.8 12 0.00025 31.4 1.0 7 243-249 71-77 (113)
119 PRK14559 putative protein seri 41.8 18 0.00039 38.9 2.3 40 233-293 3-48 (645)
120 PF14353 CpXC: CpXC protein 41.6 26 0.00057 29.1 2.9 42 243-287 2-50 (128)
121 TIGR03655 anti_R_Lar restricti 40.2 18 0.00039 26.2 1.5 12 243-254 2-13 (53)
122 PRK05978 hypothetical protein; 40.1 14 0.00031 32.8 1.1 8 275-282 33-40 (148)
123 PRK11032 hypothetical protein; 38.7 21 0.00046 32.1 2.0 7 231-237 124-130 (160)
124 PRK00420 hypothetical protein; 37.2 22 0.00048 30.3 1.7 20 275-294 23-48 (112)
125 PF03833 PolC_DP2: DNA polymer 36.4 12 0.00025 41.7 0.0 45 231-295 655-701 (900)
126 PF01155 HypA: Hydrogenase exp 36.4 12 0.00027 31.1 0.1 11 242-252 70-80 (113)
127 TIGR00595 priA primosomal prot 35.8 27 0.0006 36.0 2.6 27 221-249 214-247 (505)
128 COG1645 Uncharacterized Zn-fin 35.5 32 0.0007 30.2 2.5 20 275-294 28-52 (131)
129 PF13453 zf-TFIIB: Transcripti 34.7 31 0.00067 23.7 1.9 9 275-283 19-27 (41)
130 TIGR03021 pilP_fam type IV pil 34.3 12 0.00027 31.8 -0.2 25 97-121 13-37 (119)
131 TIGR00100 hypA hydrogenase nic 34.1 19 0.00042 30.1 1.0 8 242-249 70-77 (115)
132 TIGR00209 galT_1 galactose-1-p 33.7 57 0.0012 32.4 4.3 75 67-150 107-185 (347)
133 PF06698 DUF1192: Protein of u 33.2 48 0.001 25.4 2.9 35 76-117 15-49 (59)
134 PRK14810 formamidopyrimidine-D 32.7 1.3E+02 0.0028 28.7 6.3 26 142-167 192-217 (272)
135 PF05129 Elf1: Transcription e 32.1 27 0.00058 27.9 1.4 25 283-307 43-67 (81)
136 TIGR00577 fpg formamidopyrimid 32.0 1.4E+02 0.003 28.5 6.4 24 143-166 194-217 (272)
137 PF08273 Prim_Zn_Ribbon: Zinc- 31.8 24 0.00053 24.9 1.0 14 243-256 4-17 (40)
138 PRK05580 primosome assembly pr 31.0 29 0.00063 37.2 1.8 27 222-250 383-416 (679)
139 KOG1139 Predicted ubiquitin-pr 30.6 31 0.00068 37.9 2.0 43 75-118 644-689 (784)
140 PF15616 TerY-C: TerY-C metal 30.4 46 0.001 29.1 2.7 25 223-248 69-94 (131)
141 PF00831 Ribosomal_L29: Riboso 29.9 61 0.0013 24.1 2.9 32 77-115 2-33 (58)
142 PRK01103 formamidopyrimidine/5 29.6 1.5E+02 0.0033 28.1 6.3 25 143-167 194-218 (274)
143 COG2816 NPY1 NTP pyrophosphohy 29.5 37 0.00079 33.3 2.1 15 288-309 131-145 (279)
144 KOG2958 Galactose-1-phosphate 29.4 1.1E+02 0.0024 30.8 5.3 87 11-97 47-140 (354)
145 PF08271 TF_Zn_Ribbon: TFIIB z 29.3 34 0.00073 23.7 1.4 9 244-252 2-10 (43)
146 PF14257 DUF4349: Domain of un 29.1 66 0.0014 29.9 3.7 6 139-144 214-219 (262)
147 COG1198 PriA Primosomal protei 29.0 34 0.00074 37.5 2.0 45 220-286 435-486 (730)
148 PRK14873 primosome assembly pr 28.8 39 0.00084 36.5 2.3 20 275-294 392-418 (665)
149 PRK13945 formamidopyrimidine-D 27.4 2E+02 0.0044 27.5 6.7 32 142-187 202-233 (282)
150 PRK14811 formamidopyrimidine-D 27.3 1.9E+02 0.0042 27.5 6.5 25 143-167 182-206 (269)
151 smart00778 Prim_Zn_Ribbon Zinc 27.2 42 0.00091 23.4 1.5 13 243-255 4-16 (37)
152 PF13717 zinc_ribbon_4: zinc-r 27.2 48 0.001 22.5 1.8 12 243-254 3-14 (36)
153 TIGR00757 RNaseEG ribonuclease 27.1 24 0.00052 35.9 0.4 25 200-225 268-295 (414)
154 PF07526 POX: Associated with 26.7 1.2E+02 0.0026 26.6 4.6 22 81-106 69-90 (140)
155 PF07295 DUF1451: Protein of u 26.3 57 0.0012 28.8 2.6 16 239-254 109-124 (146)
156 PRK14714 DNA polymerase II lar 25.1 47 0.001 38.7 2.2 18 277-294 681-700 (1337)
157 PRK00488 pheS phenylalanyl-tRN 25.1 36 0.00077 34.1 1.2 50 244-299 232-281 (339)
158 PF01155 HypA: Hydrogenase exp 24.8 99 0.0022 25.7 3.6 27 229-255 68-99 (113)
159 PRK13169 DNA replication intia 24.6 4.1E+02 0.0088 22.6 7.3 28 83-110 16-43 (110)
160 PRK00464 nrdR transcriptional 24.5 1.2E+02 0.0027 27.0 4.4 60 244-311 2-62 (154)
161 TIGR00757 RNaseEG ribonuclease 23.9 32 0.00069 35.0 0.6 13 275-287 390-402 (414)
162 PRK00488 pheS phenylalanyl-tRN 23.7 51 0.0011 33.0 2.0 22 232-256 261-282 (339)
163 PRK00564 hypA hydrogenase nick 23.1 39 0.00085 28.4 0.9 8 242-249 71-78 (117)
164 PF07282 OrfB_Zn_ribbon: Putat 22.4 54 0.0012 24.3 1.5 20 274-293 27-53 (69)
165 TIGR00310 ZPR1_znf ZPR1 zinc f 21.7 63 0.0014 29.7 2.1 39 243-285 1-40 (192)
166 PF08792 A2L_zn_ribbon: A2L zi 21.7 65 0.0014 21.8 1.6 11 244-254 5-15 (33)
167 PF14205 Cys_rich_KTR: Cystein 21.6 64 0.0014 24.6 1.7 13 242-254 4-16 (55)
168 KOG2706 Predicted membrane pro 21.2 55 0.0012 33.2 1.6 77 124-205 145-238 (476)
169 PRK12380 hydrogenase nickel in 21.1 1.2E+02 0.0026 25.4 3.4 26 230-255 69-99 (113)
170 PF01486 K-box: K-box region; 20.5 1.7E+02 0.0037 23.5 4.1 37 75-113 47-85 (100)
171 PRK00398 rpoP DNA-directed RNA 20.3 87 0.0019 21.9 2.1 7 244-250 5-11 (46)
172 KOG2802 Membrane protein HUEL 20.1 97 0.0021 32.2 3.1 34 76-110 443-486 (503)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.5e-13 Score=134.74 Aligned_cols=70 Identities=23% Similarity=0.646 Sum_probs=59.7
Q ss_pred eeEeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCC
Q 021554 224 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLC 294 (311)
Q Consensus 224 nnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~G 294 (311)
+++++.+...|+.|+|+|+ .+|+.|+|+|++...+++ | .++.+++|++|+|+|++ +|++|+|
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~----g-----~~~~~~~C~~C~G~G~~i~~pC~~C~G 205 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT----G-----FFSFQQTCPTCNGTGKIIKDPCGKCKG 205 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee----e-----EEEEEEECCCCccceeECCCCCCCCCC
Confidence 7788899999999999986 699999999999876543 2 34678999999999998 8999999
Q ss_pred eeEEecee
Q 021554 295 TGMAMASE 302 (311)
Q Consensus 295 tG~v~a~E 302 (311)
.|.+.+.+
T Consensus 206 ~G~v~~~~ 213 (371)
T COG0484 206 KGRVKKKK 213 (371)
T ss_pred CCeEeeee
Confidence 99977543
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.24 E-value=8.3e-12 Score=104.59 Aligned_cols=77 Identities=27% Similarity=0.667 Sum_probs=62.5
Q ss_pred eeeeEEEEeeeE-eecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCC
Q 021554 215 ISALMIVEVNNV-KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL 293 (311)
Q Consensus 215 isal~vvEinnV-k~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~ 293 (311)
|..+|+..+++. +.+....|..|+|+|..+|..|+|+|.+.... . + .++.+++|+.|.|+|+..|+.|+
T Consensus 24 ~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~---g-----~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 24 IPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--G---G-----GEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred CcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--C---C-----cEEEEEECCCCCCcceeeCCCCC
Confidence 456666666665 57778899999999999999999999987532 1 1 23567899999999999999999
Q ss_pred CeeEEece
Q 021554 294 CTGMAMAS 301 (311)
Q Consensus 294 GtG~v~a~ 301 (311)
|+|.+.+.
T Consensus 94 G~G~~~~~ 101 (111)
T PLN03165 94 GSGIQPRY 101 (111)
T ss_pred CCEEEeee
Confidence 99998764
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=2.7e-11 Score=118.12 Aligned_cols=97 Identities=23% Similarity=0.513 Sum_probs=72.5
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....+.
T Consensus 124 di~~~l~ltlee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--- 184 (372)
T PRK14296 124 SVSLDIYLTFKE----LLFGVDK------------IIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNM--- 184 (372)
T ss_pred CeEEEeeccHHH----hhCCeeE------------EEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEec---
Confidence 455666666666 6666643 666678889999999996 579999999998776543
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+++.++...+|+.|.|+|++ .|+.|+|.|.+... +-...|+|
T Consensus 185 ----g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 230 (372)
T PRK14296 185 ----GFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPK 230 (372)
T ss_pred ----cceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECC
Confidence 23445667899999999998 79999999987653 44444544
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=5.2e-11 Score=115.76 Aligned_cols=98 Identities=22% Similarity=0.521 Sum_probs=75.1
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+.+++.|++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....++.
T Consensus 126 ~di~~~l~~slee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~- 188 (369)
T PRK14282 126 EDIRYEIEVTLSD----LINGAEI------------PVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSF- 188 (369)
T ss_pred CCeEEEEEEEHHH----hcCCeEE------------EEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEcc-
Confidence 3566777777777 7777744 666778889999999996 5899999999987765542
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+| .++...+|+.|+|+|++ .|++|+|.|.+... .-+..|+|
T Consensus 189 -~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 233 (369)
T PRK14282 189 -FG-----VFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233 (369)
T ss_pred -Cc-----ceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence 34 24457899999999987 79999999988763 44445544
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=7.2e-11 Score=115.38 Aligned_cols=97 Identities=25% Similarity=0.526 Sum_probs=73.7
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|..+ ++...+...|..|+|+|. .+|+.|+|+|.+....+. .
T Consensus 116 di~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~ 177 (377)
T PRK14298 116 DLRYDLYITLEE----AAFGVRK------------DIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRST--P 177 (377)
T ss_pred CEEEEEEEEHHH----hhCCeEE------------EEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEec--C
Confidence 455666666666 6777644 666778889999999996 689999999998765543 2
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
.| .++...+|+.|.|+|++ .|+.|+|.|.+... +-+..|.|
T Consensus 178 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ipp 222 (377)
T PRK14298 178 LG-----QFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPA 222 (377)
T ss_pred ce-----eEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCC
Confidence 22 34678899999999987 89999999998753 44555555
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=8e-11 Score=114.98 Aligned_cols=98 Identities=24% Similarity=0.503 Sum_probs=73.6
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++.+.|++.| .|.|..+ +++..+...|..|+|+|. .+|..|+|+|.+....+.
T Consensus 113 ~d~~~~l~vtLee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-- 174 (378)
T PRK14278 113 SDSLLRMRLDLEE----CATGVTK------------QVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRS-- 174 (378)
T ss_pred CCeEEEEEEEHHH----hcCCeEE------------EEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEec--
Confidence 3456677777777 7777644 666678889999999996 589999999998765432
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
.+| .++...+|+.|+|+|++ +|+.|+|.|.+... .-+..|+|
T Consensus 175 ~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 220 (378)
T PRK14278 175 FLG-----QVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPA 220 (378)
T ss_pred cce-----eEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECC
Confidence 233 23457799999999987 79999999998763 34445544
No 7
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=1.6e-10 Score=113.55 Aligned_cols=97 Identities=24% Similarity=0.543 Sum_probs=72.8
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccccC
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN 264 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c~ 264 (311)
.+++.+.|++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.++...+. .+
T Consensus 138 di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~--~~ 199 (397)
T PRK14281 138 DLKIRLKLTLEE----IAKGVEK------------TLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKT--MF 199 (397)
T ss_pred CEEEEEEeEHHH----HhCCeEE------------EEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEec--cc
Confidence 345555666666 6666643 667778889999999996 579999999998765543 12
Q ss_pred CCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 265 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 265 G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++...+|+.|.|+|++ +|+.|+|.|.+... +.+..|+|
T Consensus 200 g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 200 G-----QFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred c-----eEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCC
Confidence 3 23457799999999987 89999999999764 55666665
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=1.9e-10 Score=112.39 Aligned_cols=97 Identities=23% Similarity=0.512 Sum_probs=71.8
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.+++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....+. .
T Consensus 121 di~~~l~vtLee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~ 182 (380)
T PRK14276 121 DLQYRVNLDFEE----AIFGKEK------------EVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQT--P 182 (380)
T ss_pred CEEEEEEEEHHH----hcCCeEE------------EEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEec--C
Confidence 455666666666 6777643 667778899999999996 579999999998765443 2
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+| .++.+.+|+.|.|+|++ +|+.|+|.|.+... .-+..|+|
T Consensus 183 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 227 (380)
T PRK14276 183 LG-----MMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPA 227 (380)
T ss_pred Cc-----eEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCC
Confidence 33 23457899999999987 79999999997653 33444444
No 9
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.02 E-value=1.9e-10 Score=110.70 Aligned_cols=98 Identities=22% Similarity=0.504 Sum_probs=74.4
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++++.+++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+......
T Consensus 117 ~d~~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-- 178 (354)
T TIGR02349 117 EDLRYDLELTFEE----AVFGVEK------------EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGT-- 178 (354)
T ss_pred CCeEEEEEEEHHH----HhCCeeE------------EEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEec--
Confidence 3567777888887 7888754 666778889999999995 579999999998765543
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
.+| .++.+.+|+.|.|+|+. +|+.|+|.|.+... ..+..|+|
T Consensus 179 ~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 224 (354)
T TIGR02349 179 PFG-----FFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPA 224 (354)
T ss_pred cCC-----ceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECC
Confidence 233 23457899999999997 79999999998763 33344433
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=1.9e-10 Score=112.61 Aligned_cols=97 Identities=22% Similarity=0.501 Sum_probs=72.9
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++.+.+++.| .|.|..+ +++..+...|..|+|+|. .+|..|+|+|.+....+..
T Consensus 130 di~~~l~vtLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-- 191 (386)
T PRK14277 130 DIRYDLELTFEE----AAFGTEK------------EIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTP-- 191 (386)
T ss_pred CEEEEEEEEHHH----HhCCeEE------------EEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEecc--
Confidence 456666777777 7777744 666778889999999995 5799999999987655442
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+| .++...+|+.|.|+|++ .|+.|+|.|.+... +....|+|
T Consensus 192 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 236 (386)
T PRK14277 192 FG-----RIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPA 236 (386)
T ss_pred Cc-----eEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCC
Confidence 33 23455799999999998 79999999998653 33455554
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=1.7e-10 Score=112.55 Aligned_cols=93 Identities=24% Similarity=0.536 Sum_probs=72.8
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.+++.| .|.|..+ +++..+...|..|+|+|. .+|..|+|+|.+....
T Consensus 125 di~~~l~vtLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----- 183 (372)
T PRK14286 125 DLRYNLEVSLED----AALGREY------------KIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ----- 183 (372)
T ss_pred CeeEEEEEEHHH----HhCCeeE------------EEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe-----
Confidence 466677777777 7778754 666778889999999996 6899999999986542
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp 309 (311)
| .++...+|+.|.|+|++ .|+.|+|.|.+.. .+-+..|+|
T Consensus 184 -G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 227 (372)
T PRK14286 184 -G-----FFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP 227 (372)
T ss_pred -c-----eEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence 2 22467899999999987 8999999999886 345555555
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=2e-10 Score=112.87 Aligned_cols=93 Identities=25% Similarity=0.587 Sum_probs=69.6
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....
T Consensus 148 di~~~l~ltLee----~~~G~~~------------~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----- 206 (392)
T PRK14279 148 DLETETTLDFVE----AAKGVTM------------PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----- 206 (392)
T ss_pred CeEEEEEEEHHH----HhCCeEE------------EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe-----
Confidence 345555566655 6666543 667778889999999996 5799999999987542
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++.+.+|+.|.|+|++ .|+.|+|.|.+... +....|+|
T Consensus 207 -g-----~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~ 250 (392)
T PRK14279 207 -G-----AFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPP 250 (392)
T ss_pred -c-----ceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCC
Confidence 2 12456899999999998 89999999998763 44555554
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.00 E-value=2.3e-10 Score=113.77 Aligned_cols=98 Identities=21% Similarity=0.528 Sum_probs=73.4
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c 263 (311)
..+.+++.+++.| .|.|..+ +++..+...|..|+|+|. .+|..|+|+|.+......
T Consensus 124 ~di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~--- 184 (421)
T PTZ00037 124 EDIVSHLKVTLEQ----IYNGAMR------------KLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQM--- 184 (421)
T ss_pred CCEEEEeeeeHHH----HhCCCce------------EEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEee---
Confidence 3456667777777 7777754 566678889999999996 589999999987654433
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a~-EhdprIdp 309 (311)
| ++.++.+.+|+.|+|+|++ +|++|+|.|.+... +-+..|+|
T Consensus 185 -g---~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 232 (421)
T PTZ00037 185 -G---SMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDK 232 (421)
T ss_pred -c---ceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCC
Confidence 2 2445677899999999987 69999999998764 34444444
No 14
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.6e-10 Score=111.28 Aligned_cols=97 Identities=22% Similarity=0.563 Sum_probs=71.6
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+.+.+.+++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+....+. .
T Consensus 118 di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~ 179 (376)
T PRK14280 118 DLQYTMTLTFEE----AVFGKEK------------EIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNT--P 179 (376)
T ss_pred CEEEEEEEEHHH----HhCCcee------------EEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeec--C
Confidence 455666666666 6777644 677778889999999995 579999999998765443 2
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+| .++.+.+|+.|+|+|++ .|+.|+|.|.+... +.+..|+|
T Consensus 180 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~ 224 (376)
T PRK14280 180 FG-----RVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPA 224 (376)
T ss_pred Cc-----eEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCC
Confidence 23 23457899999999987 79999999998653 33444444
No 15
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=3.6e-10 Score=109.78 Aligned_cols=89 Identities=26% Similarity=0.641 Sum_probs=69.1
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccccC
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN 264 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c~ 264 (311)
.+++.+.|++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+..... +
T Consensus 124 di~~~l~lsLee----~~~G~~~------------~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~----~ 183 (365)
T PRK14290 124 DIYTNLDISLED----AYYGTEK------------RIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRG----Q 183 (365)
T ss_pred CEEEEEEecHHH----hcCCEEE------------EEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEec----c
Confidence 455666677776 7777744 677778889999999996 58999999998866542 2
Q ss_pred CCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece
Q 021554 265 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 301 (311)
Q Consensus 265 G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~ 301 (311)
| .+.++...+|+.|.|.|++ .|+.|+|.|.+...
T Consensus 184 g---~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 220 (365)
T PRK14290 184 G---FFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVN 220 (365)
T ss_pred C---eEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEe
Confidence 2 2334556899999999987 89999999998763
No 16
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=2.5e-10 Score=111.32 Aligned_cols=94 Identities=24% Similarity=0.546 Sum_probs=73.4
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++.+.|++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 118 ~di~~~l~vtLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~---- 177 (373)
T PRK14301 118 SDLRYNLTVSFRQ----AAKGDEV------------TLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ---- 177 (373)
T ss_pred CCEEEEEeccHHH----HhCCceE------------EEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe----
Confidence 4567777788877 8888854 666678889999999996 5799999999986532
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp 309 (311)
| .++...+|+.|+|+|++ .|+.|+|.|.+.. .+.+..|+|
T Consensus 178 --G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (373)
T PRK14301 178 --G-----FFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA 221 (373)
T ss_pred --e-----eEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence 2 13458999999999997 8999999999876 345555554
No 17
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=3.6e-10 Score=109.74 Aligned_cols=94 Identities=20% Similarity=0.517 Sum_probs=72.9
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++++.+++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 116 ~di~~~l~vsLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---- 175 (371)
T PRK10767 116 ADLRYNMEITLEE----AVRGVTK------------EIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ---- 175 (371)
T ss_pred CCeEEEEEeehHH----hhCCeeE------------EEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee----
Confidence 4567777888887 7888754 666778889999999996 4899999999886532
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec-eeeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a-~EhdprIdp 309 (311)
| .++...+|+.|+|+|+. .|+.|+|.|.+.. .+-+..|+|
T Consensus 176 --g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 219 (371)
T PRK10767 176 --G-----FFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPA 219 (371)
T ss_pred --c-----eEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCC
Confidence 2 12456799999999998 8999999999876 334555554
No 18
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=2.9e-10 Score=110.68 Aligned_cols=97 Identities=22% Similarity=0.545 Sum_probs=73.3
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+.+++.+++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+....+. .
T Consensus 118 di~~~l~vsLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~ 179 (374)
T PRK14293 118 DLRYDLKLDFRE----AIFGGEK------------EIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRT--P 179 (374)
T ss_pred CeEEEEEeeHHH----HhCCceE------------EEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEec--C
Confidence 455666677776 7777743 666778889999999996 579999999998765443 1
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEeceee-CCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASEH-DPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~Eh-dprIdp 309 (311)
+| .++...+|+.|.|.|++ .|+.|.|.|.+...+. +..|.|
T Consensus 180 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp 224 (374)
T PRK14293 180 FG-----SFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA 224 (374)
T ss_pred cc-----eEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence 23 23446899999999998 8999999999877544 556655
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4.9e-10 Score=109.38 Aligned_cols=89 Identities=27% Similarity=0.567 Sum_probs=69.6
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++++.+++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....+.
T Consensus 122 ~di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-- 183 (380)
T PRK14297 122 ADIEYTINLTFEE----AVFGVEK------------EISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNT-- 183 (380)
T ss_pred CCEEEEEEEEHHH----hcCCeEE------------EEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEc--
Confidence 3566777777777 7777744 666778889999999996 579999999998765443
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA 300 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a 300 (311)
.+| .++.+.+|+.|.|+|++ +|+.|+|.|.+..
T Consensus 184 ~~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (380)
T PRK14297 184 PLG-----SFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRK 219 (380)
T ss_pred CCc-----eeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEe
Confidence 233 33567899999999987 8999999997654
No 20
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=3.3e-10 Score=110.23 Aligned_cols=94 Identities=24% Similarity=0.516 Sum_probs=71.3
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
+.+++++.+++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+...
T Consensus 120 ~di~~~l~vtlee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----- 178 (365)
T PRK14285 120 QDLTYQIEISLED----AYLGYKN------------NINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQG----- 178 (365)
T ss_pred CCEEEEEEEEHHH----hhCCeEE------------EEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEec-----
Confidence 3456666677766 6676643 667778889999999995 579999999988641
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
.| .++.+.+|+.|.|+|++ .|+.|+|.|.+... +.+..|+|
T Consensus 179 -~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 223 (365)
T PRK14285 179 -GG-----FFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPA 223 (365)
T ss_pred -Cc-----eeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECC
Confidence 23 23568899999999987 89999999998753 44555555
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=3.2e-10 Score=111.16 Aligned_cols=93 Identities=26% Similarity=0.512 Sum_probs=69.0
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 133 d~~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----- 191 (391)
T PRK14284 133 SKKVHITLSFEE----AAKGVEK------------ELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----- 191 (391)
T ss_pred CeEEEEEEEHHH----HhCCeeE------------EEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe-----
Confidence 345555666665 6666643 666778889999999996 5799999999987532
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++...+|+.|+|+|++ +|+.|+|.|.+... +-+..|+|
T Consensus 192 -G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 235 (391)
T PRK14284 192 -G-----FFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPA 235 (391)
T ss_pred -c-----eEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECC
Confidence 2 13467899999999987 89999999998653 44455554
No 22
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=4.7e-10 Score=109.30 Aligned_cols=94 Identities=27% Similarity=0.523 Sum_probs=71.0
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c 263 (311)
..+.+++.+++.| .|.|..+ ++++++...|..|+|+|. .+|..|+|+|.+....
T Consensus 114 ~di~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----- 172 (369)
T PRK14288 114 PDYLQTIELSFKE----AVFGCKK------------TIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ----- 172 (369)
T ss_pred CCeeEeccccHHH----HhCCeEE------------EEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe-----
Confidence 3456667777777 7777754 666677889999999996 5799999999986532
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++..++|+.|.|+|++ .|+.|+|.|.+... .-+..|.|
T Consensus 173 -g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~ 216 (369)
T PRK14288 173 -G-----FMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPE 216 (369)
T ss_pred -c-----eEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCC
Confidence 2 12456799999999987 89999999998763 33444444
No 23
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.94 E-value=7.1e-10 Score=83.93 Aligned_cols=56 Identities=30% Similarity=0.746 Sum_probs=43.3
Q ss_pred cccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee----eCCCCCCee
Q 021554 234 CKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLCTG 296 (311)
Q Consensus 234 C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv----~CptC~GtG 296 (311)
|+.|+|+|. .+|+.|+|+|++....+. .+ +.++...+|+.|+|+|++ +|++|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~--~~-----~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQT--PG-----GVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEES--SS-----TTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeC--CC-----eEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999997 689999999999876542 22 356778999999999998 599999986
No 24
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=5.9e-10 Score=108.66 Aligned_cols=94 Identities=21% Similarity=0.528 Sum_probs=71.7
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++++.+++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....
T Consensus 119 ~di~~~l~~sLee----~~~G~~k------------~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~---- 178 (372)
T PRK14300 119 SDLKYNLTINLEE----AFHGIEK------------NISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ---- 178 (372)
T ss_pred CCeeEEEEEEHHH----HhCCceE------------EEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee----
Confidence 4667777778777 7778754 666678889999999995 6899999999987531
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++...+|+.|.|+|++ +|++|+|.|.+... +-+..|+|
T Consensus 179 --g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 222 (372)
T PRK14300 179 --G-----FFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPA 222 (372)
T ss_pred --c-----eEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECC
Confidence 2 12356799999999988 89999999998653 33444443
No 25
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.8e-10 Score=108.27 Aligned_cols=89 Identities=24% Similarity=0.561 Sum_probs=69.1
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
+.+++++.|++.| .|.|..+ +++..+...|..|+|+|. .+|+.|+|+|.+....+.
T Consensus 112 ~d~~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~-- 173 (371)
T PRK14287 112 ADLQYTMTLEFKE----AVFGKET------------EIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT-- 173 (371)
T ss_pred CCEEEEEEEEHHH----hcCCeEE------------EEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEec--
Confidence 3556667777777 7777644 677778889999999995 579999999998765544
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA 300 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a 300 (311)
.+| .++...+|+.|.|+|++ .|+.|.|.|.+..
T Consensus 174 ~~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 209 (371)
T PRK14287 174 PFG-----RVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRK 209 (371)
T ss_pred CCc-----eEEEEEeCCCCCCCCccccccCCCCCCeeEEee
Confidence 233 23347799999999987 7999999998864
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.3e-10 Score=108.13 Aligned_cols=94 Identities=24% Similarity=0.550 Sum_probs=72.4
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeecccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~ 262 (311)
..+++++.|++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 118 ~d~~~~l~lslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~---- 177 (366)
T PRK14294 118 ADLRYDLTLPFLE----AAFGTEK------------EIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ---- 177 (366)
T ss_pred CCceEEEEeeHHH----hcCCeEE------------EEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe----
Confidence 4567777777777 7788754 666678889999999996 4799999999986431
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++.+.+|+.|.|+|+. .|+.|+|.|.+... .-+..|+|
T Consensus 178 --G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (366)
T PRK14294 178 --G-----FFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPA 221 (366)
T ss_pred --e-----eEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCC
Confidence 2 12467899999999998 89999999998753 44445554
No 27
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.2e-10 Score=109.26 Aligned_cols=93 Identities=30% Similarity=0.573 Sum_probs=68.9
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|.. ++++..+...|..|+|+|. ..|..|+|+|.+....
T Consensus 141 di~~~l~lsLee----~~~G~~------------k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----- 199 (389)
T PRK14295 141 DVESEVTLSFTE----AIDGAT------------VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----- 199 (389)
T ss_pred CEEEEEEEEHHH----HhCCce------------EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-----
Confidence 345555555555 566653 3677778899999999996 6799999999987542
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++.+.+|+.|.|+|++ .|+.|.|.|.+... ..+..|+|
T Consensus 200 -g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 243 (389)
T PRK14295 200 -G-----GFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA 243 (389)
T ss_pred -c-----ceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence 2 12457799999999998 79999999998763 34444544
No 28
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.6e-10 Score=108.53 Aligned_cols=97 Identities=23% Similarity=0.518 Sum_probs=73.1
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++.+.|++.| +|.|... +++..+.+.|..|+|+|. ..|+.|+|+|.+....+..
T Consensus 129 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-- 190 (386)
T PRK14289 129 DLRVKVKLNLKE----ISTGVEK------------KFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTI-- 190 (386)
T ss_pred CeEEEEEEEHHH----hhCCeEE------------EEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecc--
Confidence 456666777777 7777643 666778889999999996 6899999999987755432
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~-EhdprIdp 309 (311)
+| .++...+|+.|.|+|++ .|+.|.|.|.+... .....|+|
T Consensus 191 ~G-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 235 (386)
T PRK14289 191 LG-----TMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPA 235 (386)
T ss_pred cc-----eEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCC
Confidence 23 22457899999999987 89999999998764 33444443
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=1.1e-09 Score=106.82 Aligned_cols=88 Identities=23% Similarity=0.565 Sum_probs=68.7
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++.+.+++.| .|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+....+..
T Consensus 121 di~~~l~vsLed----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~-- 182 (378)
T PRK14283 121 DIYTEVEITLEE----AASGVEK------------DIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTI-- 182 (378)
T ss_pred CeEEEeeeeHHH----HhCCcce------------EEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEecc--
Confidence 456677777777 7777744 666667889999999986 5799999999987655442
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA 300 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a 300 (311)
+| .++...+|++|.|+|+. .|..|+|.|.+..
T Consensus 183 ~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 217 (378)
T PRK14283 183 LG-----QMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRE 217 (378)
T ss_pred Cc-----eEEEEEECCCCCccceecCCCCCCCCCceeecc
Confidence 23 22456799999999987 8999999999876
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=1.3e-09 Score=105.89 Aligned_cols=98 Identities=18% Similarity=0.495 Sum_probs=72.8
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-------ecCCCCcccceEEeeeccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-------LACARCSNTGSLVLIEPVS 261 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-------~~C~~C~GSG~v~~~~~~s 261 (311)
..+++.+.+++.| +|.|..+ +++..+...|..|+|+|. ..|..|+|+|.+....+.
T Consensus 113 ~d~~~~l~~sLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~- 175 (371)
T PRK14292 113 DDLETEARITLEQ----ARAGEEV------------EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQART- 175 (371)
T ss_pred CCeEEEEeccHHH----HcCCeEE------------EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEec-
Confidence 3566777777777 7888754 556667789999999995 579999999998765443
Q ss_pred ccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEecee-eCCCCCC
Q 021554 262 TVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASE-HDPRIDP 309 (311)
Q Consensus 262 ~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~E-hdprIdp 309 (311)
.+| .++...+|+.|.|.|+. .|+.|+|.|.+...+ .+..|+|
T Consensus 176 -~~g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 221 (371)
T PRK14292 176 -IFG-----VVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPR 221 (371)
T ss_pred -cCc-----eEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECC
Confidence 123 23457899999999988 899999999987532 3444443
No 31
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=1.6e-09 Score=105.89 Aligned_cols=93 Identities=25% Similarity=0.610 Sum_probs=70.3
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
.+++++.|++.| .|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 131 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----- 189 (382)
T PRK14291 131 DIYQTVEISLEE----AYTGTTV------------SLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG----- 189 (382)
T ss_pred CEEEEEEEEHHH----hhCCEEE------------EEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec-----
Confidence 456677777777 7777744 666678889999999995 6899999999986531
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee--eCCCCCCeeEEece-eeCCCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCTGMAMAS-EHDPRIDP 309 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~GtG~v~a~-EhdprIdp 309 (311)
| .++.+.+|+.|+|+|.+ .|+.|+|.|.+... .-...|+|
T Consensus 190 -g-----~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 232 (382)
T PRK14291 190 -G-----FFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPP 232 (382)
T ss_pred -c-----eEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCC
Confidence 1 23467899999999976 89999999998763 33344443
No 32
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=9e-08 Score=93.23 Aligned_cols=64 Identities=33% Similarity=0.721 Sum_probs=46.3
Q ss_pred ceeeccccccceeecCCCCcccce--------EEee-------------ecccccCCCCCCCCCCCceeCCCCCCCceee
Q 021554 230 EQKRCKYCLGTGYLACARCSNTGS--------LVLI-------------EPVSTVNGGDQPLSAPKTERCSNCSGSGKVM 288 (311)
Q Consensus 230 ~~k~C~~C~GTG~~~C~~C~GSG~--------v~~~-------------~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~ 288 (311)
-.+.|+.|+|.|...|..|+|+|. ..+. +.+..|+| ....+|++|+|+|+.+
T Consensus 186 ~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G-------~G~~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 186 IVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHG-------RGIKECHTCKGRGKKP 258 (406)
T ss_pred hhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccC-------CCcccCCcccCCCCcc
Confidence 456899999999999999999993 2211 11122333 2456788888888889
Q ss_pred CCCCCCeeEEec
Q 021554 289 CPTCLCTGMAMA 300 (311)
Q Consensus 289 CptC~GtG~v~a 300 (311)
|.+|.|+|.++.
T Consensus 259 C~TC~gtgsll~ 270 (406)
T KOG2813|consen 259 CTTCSGTGSLLN 270 (406)
T ss_pred cccccCccceee
Confidence 999999887753
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4e-07 Score=88.98 Aligned_cols=91 Identities=20% Similarity=0.446 Sum_probs=72.9
Q ss_pred hhhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeecccc
Q 021554 188 IQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVST 262 (311)
Q Consensus 188 i~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~ 262 (311)
..++.+++.+++-| .|.|++. ....+....|+.|+|+|- ..|..|.|+|.........
T Consensus 100 g~~~~~~~~~~Le~----~y~G~s~------------kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~g- 162 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEE----LYMGKSK------------KLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMG- 162 (337)
T ss_pred CCCceEEEEEEHHH----hhcCCcc------------ceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEecc-
Confidence 66777788888887 8888654 445567789999999985 5799999999987765552
Q ss_pred cCCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEec
Q 021554 263 VNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMA 300 (311)
Q Consensus 263 c~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a 300 (311)
.| |..+.+.+|..|.|+|.. .|+.|.|++.+..
T Consensus 163 -Pg----~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~ 200 (337)
T KOG0712|consen 163 -PG----MVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVRE 200 (337)
T ss_pred -cc----ccccceeEeccCCCccccccccccCcccccchhhhh
Confidence 22 556778999999999997 8999999998765
No 34
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.13 E-value=1.6e-06 Score=89.80 Aligned_cols=70 Identities=31% Similarity=0.624 Sum_probs=49.5
Q ss_pred eecccccccee-----ecCCCCcccceEEeeecc--cccCCCCCCCCCCCceeCCCCCCCcee----eCCCCCCeeEEec
Q 021554 232 KRCKYCLGTGY-----LACARCSNTGSLVLIEPV--STVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLCTGMAMA 300 (311)
Q Consensus 232 k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~--s~c~G~~g~~~~q~~~rCp~C~G~GKv----~CptC~GtG~v~a 300 (311)
+.|+.|+|+|+ ..|+.|+|+|.....++. +...-.+--+....-.+|+.|.|.|++ .|+.|.|+|++++
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 58999999998 569999999998544321 000000001122335689999999998 7999999999987
Q ss_pred e
Q 021554 301 S 301 (311)
Q Consensus 301 ~ 301 (311)
-
T Consensus 83 c 83 (715)
T COG1107 83 C 83 (715)
T ss_pred e
Confidence 3
No 35
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=2.1e-05 Score=77.90 Aligned_cols=75 Identities=23% Similarity=0.589 Sum_probs=49.8
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeec------ceeecccccccee-------------ecCCCCc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQ------EQKRCKYCLGTGY-------------LACARCS 249 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q------~~k~C~~C~GTG~-------------~~C~~C~ 249 (311)
..+.+.+.|++.+ .|+|.... |..-....+..++.. ..++|+.|+|+|. .+|+.|+
T Consensus 116 ~Dl~~~l~isleE----a~~G~~~~-i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~ 190 (371)
T COG0484 116 ADLRYNLEITLEE----AVFGVKKE-IRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCN 190 (371)
T ss_pred CceEEEEEeEhhh----hccCceee-EecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCc
Confidence 3344444555554 55555432 222223445566554 6789999999994 4799999
Q ss_pred ccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 250 NTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 250 GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
|+|.+. ..+|++|+|.|++
T Consensus 191 G~G~~i-------------------~~pC~~C~G~G~v 209 (371)
T COG0484 191 GTGKII-------------------KDPCGKCKGKGRV 209 (371)
T ss_pred cceeEC-------------------CCCCCCCCCCCeE
Confidence 999884 3479999999985
No 36
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.66 E-value=4.7e-05 Score=57.63 Aligned_cols=39 Identities=41% Similarity=0.951 Sum_probs=27.9
Q ss_pred CCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEe
Q 021554 245 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAM 299 (311)
Q Consensus 245 C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~ 299 (311)
|+.|+|+|.... ....+|+.|+|+|++ .|+.|+|+|++.
T Consensus 1 C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPG----------------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-ST----------------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCC----------------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 889999997621 145789999999976 599999999997
No 37
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.00015 Score=75.73 Aligned_cols=45 Identities=36% Similarity=1.121 Sum_probs=35.8
Q ss_pred ceeecccccccee------------------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCc
Q 021554 230 EQKRCKYCLGTGY------------------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 285 (311)
Q Consensus 230 ~~k~C~~C~GTG~------------------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~G 285 (311)
..+.|+.|+|+|. .+|+.|.|+|.+.. ..+|+.|.|+|
T Consensus 17 ~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------------~~~c~~c~G~g 78 (715)
T COG1107 17 GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------------YDTCPECGGTG 78 (715)
T ss_pred eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------------EeecccCCCce
Confidence 3457999999984 48999999999864 34688999998
Q ss_pred ee-eCCCC
Q 021554 286 KV-MCPTC 292 (311)
Q Consensus 286 Kv-~CptC 292 (311)
++ .|..|
T Consensus 79 kv~~c~~c 86 (715)
T COG1107 79 KVLTCDIC 86 (715)
T ss_pred eEEeeccc
Confidence 87 67776
No 38
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00061 Score=67.43 Aligned_cols=43 Identities=28% Similarity=0.678 Sum_probs=34.8
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|+|+|++..
T Consensus 173 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~ 226 (392)
T PRK14279 173 PAPCTTCHGSGARPG----------------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE 226 (392)
T ss_pred cccCCCCccccccCC----------------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence 368999999997632 124679999999975 6999999999864
No 39
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.77 E-value=0.00075 Score=66.67 Aligned_cols=43 Identities=35% Similarity=0.834 Sum_probs=34.6
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 158 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 211 (391)
T PRK14284 158 YKSCDACSGSGANSS----------------QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT 211 (391)
T ss_pred eccCCCCcccccCCC----------------CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC
Confidence 468999999997521 134689999999983 7999999999763
No 40
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.72 E-value=0.001 Score=65.52 Aligned_cols=42 Identities=29% Similarity=0.739 Sum_probs=33.9
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 150 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~ 206 (372)
T PRK14296 150 TNCSKCFGSGAESN----------------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK 206 (372)
T ss_pred eccCCCCCCccCCC----------------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec
Confidence 68999999997531 124679999999964 6999999999863
No 41
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.63 E-value=0.0013 Score=64.53 Aligned_cols=39 Identities=31% Similarity=0.880 Sum_probs=29.3
Q ss_pred ceeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
....|..|+|+|. .+|+.|+|+|.+.. .+|+.|.|+|.+
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v 210 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-------------------NPCKKCHGMGRY 210 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-------------------CCCCCCCCceEE
Confidence 3457999999885 36888888887732 359999998875
No 42
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.61 E-value=0.0013 Score=64.71 Aligned_cols=42 Identities=33% Similarity=0.855 Sum_probs=33.9
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 145 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 197 (373)
T PRK14301 145 VTCDDCGGSGAAPG----------------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT 197 (373)
T ss_pred ccCCCCCCcccCCC----------------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence 68999999997632 123579999999964 6999999999864
No 43
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.60 E-value=0.0014 Score=64.32 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=33.8
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 153 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 209 (369)
T PRK14282 153 ETCPHCGGTGVEPG----------------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG 209 (369)
T ss_pred ccCCCCCccCCCCC----------------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence 68999999997521 134679999999964 5999999999864
No 44
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.59 E-value=0.0014 Score=64.10 Aligned_cols=43 Identities=30% Similarity=0.814 Sum_probs=34.2
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|+...
T Consensus 142 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK10767 142 LVTCDTCHGSGAKPG----------------TSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK 195 (371)
T ss_pred cccCCCCCCcccCCC----------------CCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC
Confidence 368999999997531 123579999999976 4999999999864
No 45
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.58 E-value=0.0015 Score=64.75 Aligned_cols=43 Identities=35% Similarity=0.776 Sum_probs=34.5
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|+.|.|+|++..
T Consensus 166 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (389)
T PRK14295 166 QAPCPACSGTGAKNG----------------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD 219 (389)
T ss_pred cccCCCCcccccCCC----------------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence 368999999997632 124679999999974 7999999999864
No 46
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.58 E-value=0.0015 Score=64.20 Aligned_cols=42 Identities=31% Similarity=0.855 Sum_probs=33.9
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 151 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 203 (372)
T PRK14286 151 ESCVDCNGSGASKG----------------SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS 203 (372)
T ss_pred ccCCCCcCCCcCCC----------------CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec
Confidence 68999999997521 123579999999965 6999999999864
No 47
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.0016 Score=64.15 Aligned_cols=38 Identities=32% Similarity=0.899 Sum_probs=29.8
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|. .+|+.|+|+|.+.. .+|+.|.|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------------DPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------------CCCCCCCCceeE
Confidence 457999999985 36999999998742 249999999865
No 48
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.54 E-value=0.0014 Score=64.56 Aligned_cols=38 Identities=45% Similarity=1.022 Sum_probs=28.7
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
.+.|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-------------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-------------------CCCCCCCCCccEE
Confidence 457999999885 3688888888763 2359999998865
No 49
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.0015 Score=64.24 Aligned_cols=42 Identities=26% Similarity=0.737 Sum_probs=33.8
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|.|+|++ .|+.|.|+|++..
T Consensus 149 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 205 (380)
T PRK14297 149 ENCETCNGTGAKPG----------------TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE 205 (380)
T ss_pred ccCCCcccccccCC----------------CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence 68999999998621 124679999999854 6999999999864
No 50
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.51 E-value=0.0015 Score=65.60 Aligned_cols=41 Identities=27% Similarity=0.665 Sum_probs=32.8
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce---------------eeCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK---------------VMCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK---------------v~CptC~GtG~v~a 300 (311)
..|..|+|+|... + ...+|+.|+|+|. ..|+.|.|+|++..
T Consensus 151 ~~C~~C~G~G~~~---------~--------~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~ 206 (421)
T PTZ00037 151 VICANCEGHGGPK---------D--------AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP 206 (421)
T ss_pred ccccccCCCCCCC---------C--------CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc
Confidence 6899999999531 1 2357999999994 27999999999875
No 51
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.51 E-value=0.0017 Score=63.77 Aligned_cols=38 Identities=29% Similarity=0.953 Sum_probs=29.8
Q ss_pred eeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 211 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-------------------SNPCKSCKGKGSL 211 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-------------------CCCCCCCCCCCEE
Confidence 457999999985 3799999998773 2359999999964
No 52
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.49 E-value=0.0014 Score=64.57 Aligned_cols=43 Identities=28% Similarity=0.679 Sum_probs=34.0
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|+.|.|+|++..
T Consensus 146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 203 (380)
T PRK14276 146 EATCHTCNGSGAKPG----------------TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK 203 (380)
T ss_pred cccCCCCcCcccCCC----------------CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc
Confidence 368999999996521 124579999999864 5999999999864
No 53
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0026 Score=61.25 Aligned_cols=55 Identities=25% Similarity=0.607 Sum_probs=44.2
Q ss_pred ecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCC
Q 021554 228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL 293 (311)
Q Consensus 228 ~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~ 293 (311)
....-.|..|.|.+.++|..|+||=.+... +. -. -...+|+.|+=.|-+.|+.|.
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-~~--~~--------~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE-EE--DD--------GGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee-cc--CC--------CcEEECcccCCCCceeCCccC
Confidence 344578999999999999999999988653 11 01 135799999999999999995
No 54
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0018 Score=63.53 Aligned_cols=41 Identities=32% Similarity=0.763 Sum_probs=33.1
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ...+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 141 ~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 192 (369)
T PRK14288 141 SVCESCDGTGAKDK-----------------ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK 192 (369)
T ss_pred ccCCCCCCcccCCC-----------------CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc
Confidence 58999999996421 23579999999965 5999999999863
No 55
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0019 Score=63.54 Aligned_cols=38 Identities=39% Similarity=0.996 Sum_probs=26.0
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|. .+|+.|+|+|.+.. .+|+.|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK-------------------EKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec-------------------CCCCCCCCceEE
Confidence 456888888774 25888888887631 248888887754
No 56
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.38 E-value=0.0018 Score=63.69 Aligned_cols=42 Identities=36% Similarity=0.808 Sum_probs=33.5
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 139 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK14287 139 ETCGTCHGSGAKPG----------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK 195 (371)
T ss_pred ccCCCCCCcccCCC----------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence 68999999997521 134679999999963 5999999999854
No 57
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.38 E-value=0.0023 Score=58.26 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=9.3
Q ss_pred eecCCCCcccceEE
Q 021554 242 YLACARCSNTGSLV 255 (311)
Q Consensus 242 ~~~C~~C~GSG~v~ 255 (311)
...|+.|+|+|.+.
T Consensus 99 ~~~C~~C~G~G~~i 112 (186)
T TIGR02642 99 SCKCPRCRGTGLIQ 112 (186)
T ss_pred CCcCCCCCCeeEEe
Confidence 56677777777664
No 58
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.37 E-value=0.0021 Score=63.22 Aligned_cols=39 Identities=31% Similarity=0.973 Sum_probs=27.7
Q ss_pred ceeeccccccceee---------------cCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 230 EQKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GTG~~---------------~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
....|+.|+|+|.+ +|+.|+|+|.+. ...|+.|.|+|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEE
Confidence 34578888888752 588888888663 1358888888854
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.32 E-value=0.0025 Score=62.38 Aligned_cols=42 Identities=31% Similarity=0.780 Sum_probs=33.9
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
..|..|+|+|.... ....+|+.|.|.|.+ .|+.|.|+|++..
T Consensus 145 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~ 197 (366)
T PRK14294 145 ETCEECHGSGCEPG----------------TSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV 197 (366)
T ss_pred ccCCCCCCccccCC----------------CCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC
Confidence 68999999998632 124679999999964 6999999999863
No 60
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.32 E-value=0.0025 Score=62.91 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=34.2
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|+.|.|+|++..
T Consensus 155 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 212 (386)
T PRK14277 155 FEKCDVCKGSGAKPG----------------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT 212 (386)
T ss_pred eccCCCCCCCCcCCC----------------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc
Confidence 368999999997521 134679999999864 5999999999864
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.25 E-value=0.003 Score=62.62 Aligned_cols=42 Identities=43% Similarity=0.879 Sum_probs=33.5
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~a 300 (311)
...|..|+|+|.... ...+|+.|.|+|.+ .|+.|.|+|++..
T Consensus 163 ~~~C~~C~G~G~~~~-----------------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (397)
T PRK14281 163 QVPCKECNGTGSKTG-----------------ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK 219 (397)
T ss_pred eecCCCCCCcccCCC-----------------CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC
Confidence 368999999997521 23579999999964 5999999999864
No 62
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0028 Score=62.49 Aligned_cols=53 Identities=26% Similarity=0.574 Sum_probs=33.6
Q ss_pred ecCCCCcccceEEeeecccccCCCCC-------CCCC-----------CCceeCCCCCCCceeeCCCCCCeeEEe
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQ-------PLSA-----------PKTERCSNCSGSGKVMCPTCLCTGMAM 299 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g-------~~~~-----------q~~~rCp~C~G~GKv~CptC~GtG~v~ 299 (311)
..|..|.|.|..++. .|+|++. +|.- -+...|..|+|+|+..|++|+|.|.+.
T Consensus 188 ~~ch~c~gRG~~vc~----gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCH----GCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKP 258 (406)
T ss_pred hhhhcccCCCceecc----CcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcc
Confidence 468888888877652 3444320 1111 123557778888888888888888764
No 63
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.19 E-value=0.0034 Score=61.45 Aligned_cols=38 Identities=37% Similarity=0.940 Sum_probs=28.1
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|+.|+|+|. .+|+.|.|.|.+. ..+|+.|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence 457888888884 3688888888762 2358888888864
No 64
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.19 E-value=0.0035 Score=60.85 Aligned_cols=38 Identities=42% Similarity=1.000 Sum_probs=28.9
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|. .+|+.|+|+|.+.. ..|+.|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------------EPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------------CCCCCCCCCcEe
Confidence 457999999884 36889998887631 249999998865
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0042 Score=61.25 Aligned_cols=41 Identities=37% Similarity=0.857 Sum_probs=32.7
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEE
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMA 298 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v 298 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|+.|.|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 156 YVPCEACGGTGYDPG----------------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred eccCCCCccccCCCC----------------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 368999999997531 134679999999975 69999999964
No 66
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0042 Score=61.03 Aligned_cols=38 Identities=32% Similarity=0.857 Sum_probs=27.8
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|. .+|..|.|+|.+.. .+|..|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------------~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE-------------------DPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec-------------------cCCCCCCCCccc
Confidence 457888888885 25888888887632 248888888854
No 67
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.88 E-value=0.0054 Score=60.36 Aligned_cols=42 Identities=26% Similarity=0.711 Sum_probs=33.4
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---------------eCCCCCCeeEEe
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAM 299 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---------------~CptC~GtG~v~ 299 (311)
...|..|+|+|.... ....+|+.|.|+|.+ .|++|.|+|+..
T Consensus 146 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 202 (378)
T PRK14283 146 TKKCPVCNGSRAEPG----------------SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV 202 (378)
T ss_pred eccCCCCCccccCCC----------------CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence 368999999996521 134579999999874 599999999985
No 68
>PRK14292 chaperone protein DnaJ; Provisional
Probab=95.82 E-value=0.0064 Score=59.52 Aligned_cols=38 Identities=34% Similarity=0.989 Sum_probs=27.0
Q ss_pred eeeccccccceee---------------cCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~~---------------~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|..|+|+|.. +|..|+|+|... ..+|+.|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence 4578888888752 588888888763 2358888888754
No 69
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0039 Score=59.81 Aligned_cols=66 Identities=26% Similarity=0.524 Sum_probs=48.1
Q ss_pred Eeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCee
Q 021554 226 VKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTG 296 (311)
Q Consensus 226 Vk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG 296 (311)
+.......|..|.|.|. ..|..|+|+|.+...... .+ .. .+|..|.|.|++ .|..|.|.|
T Consensus 159 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~f------~~---~~~~~c~~~~~~~~~~c~~~~g~~ 227 (288)
T KOG0715|consen 159 ISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKED--PF------IL---YTCSYCLGRGLVLRDNCQACSGAG 227 (288)
T ss_pred eEEEeecccccccCcCcccccccccchhhhCcccccccccC--Cc------ce---eecccccccceeccchHHHhhcch
Confidence 33445569999999996 689999999976442221 11 11 289999999998 599999999
Q ss_pred EEecee
Q 021554 297 MAMASE 302 (311)
Q Consensus 297 ~v~a~E 302 (311)
++...+
T Consensus 228 ~v~~~k 233 (288)
T KOG0715|consen 228 QVRRAK 233 (288)
T ss_pred hhhhhe
Confidence 665443
No 70
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.40 E-value=0.011 Score=53.99 Aligned_cols=26 Identities=35% Similarity=0.866 Sum_probs=21.7
Q ss_pred eeeccccccceee-----cCCCCcccceEEe
Q 021554 231 QKRCKYCLGTGYL-----ACARCSNTGSLVL 256 (311)
Q Consensus 231 ~k~C~~C~GTG~~-----~C~~C~GSG~v~~ 256 (311)
...|+.|+|+|.. +|+.|+|+|.+..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 4589999999973 5999999999854
No 71
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.30 E-value=0.019 Score=50.31 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=37.6
Q ss_pred ceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeC
Q 021554 230 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMC 289 (311)
Q Consensus 230 ~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~C 289 (311)
....|..|.|.+.++|..|+||=.+...+.. + .....+|+.|+=.|-++|
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~----~------~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAENAT----A------AGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEeccCc----c------cccEEECCCCCccccccC
Confidence 3457999999999999999999998653211 0 113578888888887776
No 72
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=94.06 E-value=0.041 Score=46.59 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=13.0
Q ss_pred eeeccccccceeecCCCCcccceE
Q 021554 231 QKRCKYCLGTGYLACARCSNTGSL 254 (311)
Q Consensus 231 ~k~C~~C~GTG~~~C~~C~GSG~v 254 (311)
...|+.|+|+|...|..|+|+|.+
T Consensus 75 ~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 75 VSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EEECCCCCCcceeeCCCCCCCEEE
Confidence 345555555555555555555554
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=0.25 Score=49.02 Aligned_cols=73 Identities=26% Similarity=0.589 Sum_probs=47.1
Q ss_pred hhhhhhhhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee----------------ecCC
Q 021554 183 SYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY----------------LACA 246 (311)
Q Consensus 183 ~y~~fi~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~----------------~~C~ 246 (311)
+++|+....+.|+.|+.-. +++-+=|.-+ +. -....|..|.|+|. ..|.
T Consensus 110 ~Le~~y~G~s~kl~l~~~~--iCs~C~GsGg----------ks---g~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRNF--ICSKCSGSGG----------KS---GSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred EHHHhhcCCccceecccCc--cCCcCCCCCC----------CC---CCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence 4778877778888777542 4444433221 01 12337999999985 4677
Q ss_pred CCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 247 RCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 247 ~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
.|.|+|... ....+|+.|.|++.+
T Consensus 175 ~C~G~G~~~-----------------~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 175 SCNGSGETI-----------------SLKDRCKTCSGAKVV 198 (337)
T ss_pred cCCCccccc-----------------cccccCcccccchhh
Confidence 777777652 135679999999865
No 74
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=85.36 E-value=0.98 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.8
Q ss_pred eCCCCCCeeEEeceeeCCCCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRIDPF 310 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprIdpf 310 (311)
.|.+|++.=++.-.+.|+.+||+
T Consensus 254 ~C~~C~~YlK~~~~~~d~~~~p~ 276 (309)
T PRK03564 254 SCGDCGTYLKILYQEKDPKVEAV 276 (309)
T ss_pred ecccccccceecccccCCCCCcc
Confidence 69999998888888999999997
No 75
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.92 E-value=1.3 Score=38.81 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=8.5
Q ss_pred eecCCCCcccceE
Q 021554 242 YLACARCSNTGSL 254 (311)
Q Consensus 242 ~~~C~~C~GSG~v 254 (311)
...|..|.|.+++
T Consensus 99 ~~~C~~Cgg~rfv 111 (147)
T cd03031 99 GGVCEGCGGARFV 111 (147)
T ss_pred CCCCCCCCCcCeE
Confidence 3457777776666
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.44 E-value=1.6 Score=44.90 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=38.5
Q ss_pred eeeEeecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCCCCe
Q 021554 223 VNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 295 (311)
Q Consensus 223 innVk~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~Gt 295 (311)
+|.........|..|.- ...|++|+++=..... ...-.|+.|+-.-.. .||.|.+.
T Consensus 205 lnrrGya~~~~C~~Cg~--~~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGY--ILCCPNCDVSLTYHKK---------------EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred EeCCcCCCeeEhhhCcC--ccCCCCCCCceEEecC---------------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 45555556678999942 2689999876544321 245679999987765 79999764
No 77
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=80.24 E-value=1.6 Score=47.29 Aligned_cols=55 Identities=25% Similarity=0.590 Sum_probs=39.0
Q ss_pred eeeEeecceeecccccccee-ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCCCCe
Q 021554 223 VNNVKQQEQKRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 295 (311)
Q Consensus 223 innVk~q~~k~C~~C~GTG~-~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~Gt 295 (311)
+|..-......|+.| |+ ..|++|...=..... ...-.|+.|+-...+ .||.|.++
T Consensus 427 lnRRGys~~l~C~~C---g~v~~Cp~Cd~~lt~H~~---------------~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 427 LNRRGYAPLLLCRDC---GYIAECPNCDSPLTLHKA---------------TGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred EccCCccceeecccC---CCcccCCCCCcceEEecC---------------CCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 344334456679999 45 689999987544321 246789999988666 79999887
No 78
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=79.41 E-value=0.79 Score=43.61 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred CceeCCCCCCCceeeCCCCCCeeEEecee
Q 021554 274 KTERCSNCSGSGKVMCPTCLCTGMAMASE 302 (311)
Q Consensus 274 ~~~rCp~C~G~GKv~CptC~GtG~v~a~E 302 (311)
...+|-.-.|++-+.||+|+|+|.+.+..
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 34567778888888999999999887644
No 79
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=78.20 E-value=2 Score=42.05 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.8
Q ss_pred eCCCCCCeeEEeceeeCCCCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRIDPF 310 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprIdpf 310 (311)
.|.+|++.=++.-.+.|+.+||+
T Consensus 254 ~C~~C~~YlK~~~~~~d~~~~~~ 276 (305)
T TIGR01562 254 TCDSCQGYLKILYQEKDPHADAV 276 (305)
T ss_pred eccccccchhhhccccCCccCch
Confidence 69999998888888999999997
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.87 E-value=2 Score=47.75 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=15.3
Q ss_pred hhHHHHHhhhHHHHHHHHHh
Q 021554 74 ETVQDFAKMELQEIHDNIRS 93 (311)
Q Consensus 74 ~~~~d~~~m~~~ei~~ni~~ 93 (311)
-++-|+.+|.++|+.+=+++
T Consensus 427 ~~I~e~~~~~v~~~~~~~~~ 446 (924)
T TIGR00630 427 KSIADVSELSIREAHEFFNQ 446 (924)
T ss_pred EEHHHHhcCCHHHHHHHHHh
Confidence 46889999998888775544
No 81
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=1.4 Score=42.56 Aligned_cols=43 Identities=37% Similarity=0.862 Sum_probs=34.2
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee----------e-CCCCCCeeEEece
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV----------M-CPTCLCTGMAMAS 301 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv----------~-CptC~GtG~v~a~ 301 (311)
..|..|.|.|... | ...+.|..|.|.|++ . |..|++.|.+...
T Consensus 165 ~~~~t~~~~~~~~---------~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~ 218 (288)
T KOG0715|consen 165 SDCETCFGSGAEE---------G-------AKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD 218 (288)
T ss_pred cccccccCcCccc---------c-------cccccchhhhCcccccccccCCcceeecccccccceeccc
Confidence 6899999999332 1 256789999999943 4 9999999998764
No 82
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=2.2 Score=41.61 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=7.6
Q ss_pred eCCCCCCeeEEe
Q 021554 288 MCPTCLCTGMAM 299 (311)
Q Consensus 288 ~CptC~GtG~v~ 299 (311)
+|+.|.-.|.++
T Consensus 264 rC~~CNENGLvr 275 (281)
T KOG2824|consen 264 RCLECNENGLVR 275 (281)
T ss_pred ECcccCCCCcee
Confidence 577776666554
No 83
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.22 E-value=1.7 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=19.6
Q ss_pred ceeCCCCCCCcee------------eCCCCCCeeEEe
Q 021554 275 TERCSNCSGSGKV------------MCPTCLCTGMAM 299 (311)
Q Consensus 275 ~~rCp~C~G~GKv------------~CptC~GtG~v~ 299 (311)
.-+|+.|.|.|.+ .|+.|+|+....
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCceeCh
Confidence 3669999999876 699999887654
No 84
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=71.87 E-value=2.5 Score=38.60 Aligned_cols=50 Identities=28% Similarity=0.764 Sum_probs=35.7
Q ss_pred ceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCc------eeeCCCCC
Q 021554 230 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG------KVMCPTCL 293 (311)
Q Consensus 230 ~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~G------Kv~CptC~ 293 (311)
-+..|..|.+.|. .|.-|+....+. |+......+|+.|+.-= +..||.|.
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~~~If-------------PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSDDIIF-------------PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCCCCCC-------------CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 3448999999995 899998875542 22334678899998642 23688884
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.59 E-value=4.5 Score=43.15 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=33.7
Q ss_pred ecceeeccccccceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCCCCe
Q 021554 228 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 295 (311)
Q Consensus 228 ~q~~k~C~~C~GTG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC~Gt 295 (311)
......|..|.- ...|++|++.=..... ...-.|+.|+-+-.. .||.|.+.
T Consensus 378 y~~~~~C~~Cg~--~~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 378 YAPFLLCRDCGW--VAECPHCDASLTLHRF---------------QRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred CCCceEhhhCcC--ccCCCCCCCceeEECC---------------CCeEECCCCcCCCCCCCCCCCCcCC
Confidence 344567888842 2579999984333221 235679999987665 79999765
No 86
>PRK00295 hypothetical protein; Provisional
Probab=71.34 E-value=14 Score=28.58 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhcCCCccccCCCCCCC
Q 021554 79 FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 133 (311)
Q Consensus 79 ~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~g~~~~~~~~~~~~~ 133 (311)
|..-.++++-+-|..-...|-.|-.+++.|+ +||+..+-+.....++.+.|+|
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~~~~~~~e~~PPHY 68 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMVGQFGSFEEEAPPPHY 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCCCcCCC
Confidence 3444466777666666666777777788774 3555554444555667778887
No 87
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.86 E-value=3.3 Score=46.15 Aligned_cols=20 Identities=5% Similarity=0.277 Sum_probs=13.9
Q ss_pred hhHHHHHhhhHHHHHHHHHh
Q 021554 74 ETVQDFAKMELQEIHDNIRS 93 (311)
Q Consensus 74 ~~~~d~~~m~~~ei~~ni~~ 93 (311)
-+..||..|.++|+..=++.
T Consensus 429 ~~i~~~~~~~v~~~~~~~~~ 448 (943)
T PRK00349 429 KNIGEVSELSIGEALEFFEN 448 (943)
T ss_pred EEHHHHhcCcHHHHHHHHHh
Confidence 35678888888777665544
No 88
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=68.78 E-value=2.6 Score=46.96 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=19.5
Q ss_pred ceeCCCCCCCcee------------eCCCCCCeeEEec
Q 021554 275 TERCSNCSGSGKV------------MCPTCLCTGMAMA 300 (311)
Q Consensus 275 ~~rCp~C~G~GKv------------~CptC~GtG~v~a 300 (311)
.-+|++|.|.|.+ .|+.|+|+.....
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e 775 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRE 775 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCcccccc
Confidence 4568888888875 5999988776543
No 89
>PRK14873 primosome assembly protein PriA; Provisional
Probab=67.96 E-value=6.5 Score=42.18 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=35.9
Q ss_pred eeeEeecceeecccccccee-ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce-eeCCCCCCe
Q 021554 223 VNNVKQQEQKRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLCT 295 (311)
Q Consensus 223 innVk~q~~k~C~~C~GTG~-~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK-v~CptC~Gt 295 (311)
+|.--+.....|..|. + ..|++|++.=..... ...-.|+.|+-.-. ..||.|.++
T Consensus 375 lnRrGyap~l~C~~Cg---~~~~C~~C~~~L~~h~~---------------~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 375 VPRRGYVPSLACARCR---TPARCRHCTGPLGLPSA---------------GGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred ecCCCCCCeeEhhhCc---CeeECCCCCCceeEecC---------------CCeeECCCCcCCCcCccCCCCcCC
Confidence 3443344566799994 4 689999986555321 13567999986532 279999775
No 90
>PLN02643 ADP-glucose phosphorylase
Probab=66.64 E-value=31 Score=33.99 Aligned_cols=112 Identities=16% Similarity=0.340 Sum_probs=61.1
Q ss_pred ccceeecccCCcCCCCCCCCcc----cc------cCCCCc--eEEeeCchhHHHHHhhhHHHHHHHHHhhhhhhhhhHHH
Q 021554 37 SNWRCRASEPESSSFAPSIDAE----SA------DKNAAG--FCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEE 104 (311)
Q Consensus 37 ~~~~~~~s~~~~s~~~~~~~~~----~~------~~~~~~--~~~~~~~~~~~d~~~m~~~ei~~ni~~r~~ki~~~~ee 104 (311)
..|..++-.-.=.|+.+..... +. ....-| .-|||+|+-..+|++|..++|.+=|..=++ .
T Consensus 67 ~~w~vrv~~N~fPal~~~~~~~~~~~~~~~~~~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~~v~~~~~~-------r 139 (336)
T PLN02643 67 PDWKVRVIENLYPALSRDLEPPCTEGQGEDYGGRRLPGFGFHDVVIETPVHSVQLSDLPARHIGEVLKAYKK-------R 139 (336)
T ss_pred CCCeEEEEeCCCccccCCCCCCcccccCcchhhcccceeeEEEEEEeCCccCCChHHCCHHHHHHHHHHHHH-------H
Confidence 3688777665555544222111 10 112233 459999999999999999999996665333 3
Q ss_pred HHHHHHHhhhhhhhcCCC-ccccCCCCCCCC---CCCCCCCccchhhH---HHHHHHH
Q 021554 105 VRRLRIQQRIKNAELGIS-KEEQDNELPSFP---SFIPFLPPLSAANL---KVYYATC 155 (311)
Q Consensus 105 vrrlr~q~r~k~~~~g~~-~~~~~~~~~~~~---s~~p~~~~~~~~~~---~~~~~~~ 155 (311)
++.|+=+-|||-+-+--+ ..+--..+++== -..||+|+.-.+.+ +.||...
T Consensus 140 ~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~~ 197 (336)
T PLN02643 140 INQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDGSKEYFEKT 197 (336)
T ss_pred HHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHHHHHHHHHh
Confidence 455544444544332000 011112333322 23788988655444 5566554
No 91
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.60 E-value=2.1 Score=40.65 Aligned_cols=36 Identities=25% Similarity=0.651 Sum_probs=22.3
Q ss_pred ceeCCCCCCCcee----------------eCCCCCCeeEEeceeeCCCCCCC
Q 021554 275 TERCSNCSGSGKV----------------MCPTCLCTGMAMASEHDPRIDPF 310 (311)
Q Consensus 275 ~~rCp~C~G~GKv----------------~CptC~GtG~v~a~EhdprIdpf 310 (311)
+..||.|+-.... .|.+|++.=++...+.|+.+||+
T Consensus 211 R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd~~~~~~~~~~ 262 (290)
T PF04216_consen 211 RIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVDREKDPELDPV 262 (290)
T ss_dssp TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEETTT-TT--HH
T ss_pred CCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHhhhhCcccchh
Confidence 3468888865421 69999999888888899999874
No 92
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=64.57 E-value=3 Score=39.80 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=18.5
Q ss_pred eccccccceeecCCCCcccceEEe
Q 021554 233 RCKYCLGTGYLACARCSNTGSLVL 256 (311)
Q Consensus 233 ~C~~C~GTG~~~C~~C~GSG~v~~ 256 (311)
.|..-.|.+..+|+.|+|+|++-.
T Consensus 29 py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 29 PYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred ccccccCCCCCcCCCCcCCccCCc
Confidence 455566777899999999999843
No 93
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.13 E-value=6.7 Score=43.59 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=15.6
Q ss_pred eEEeeCchhHHHHHhhhHHHHHHH
Q 021554 67 FCIIEGPETVQDFAKMELQEIHDN 90 (311)
Q Consensus 67 ~~~~~~~~~~~d~~~m~~~ei~~n 90 (311)
-+-|.+ -.+.||..|++.+..+=
T Consensus 415 ~v~i~g-~~i~e~~~msi~~~~~f 437 (935)
T COG0178 415 AVKIAG-KNIAEISEMSIADALEF 437 (935)
T ss_pred eeEECC-ccHHHHhhccHHHHHHH
Confidence 345555 67888999987766543
No 94
>PRK00846 hypothetical protein; Provisional
Probab=62.11 E-value=33 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=34.2
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhc-CCCccccCCCCCCC
Q 021554 80 AKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL-GISKEEQDNELPSF 133 (311)
Q Consensus 80 ~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~-g~~~~~~~~~~~~~ 133 (311)
..--++++-+-|..-+..|-.|-+.+++|+ .|||.++. ++...+++++.|+|
T Consensus 25 Qe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~~s~~~~~~dE~PPPHY 77 (77)
T PRK00846 25 QEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFADPADEPPPPHY 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccccCCCCCCCCCcCCC
Confidence 333366676666666666666777777776 47777764 44556677788887
No 95
>PRK00736 hypothetical protein; Provisional
Probab=61.61 E-value=28 Score=26.88 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=33.5
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhcCCCccccCCCCCCC
Q 021554 79 FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 133 (311)
Q Consensus 79 ~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~g~~~~~~~~~~~~~ 133 (311)
|...-++++-+-|..-...|-.|-++++.|+- |++..+.+.....++++.|+|
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~--rl~~~~~~~~~~~~~~~PPHY 68 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTE--RFLSLEEQAAPDVPVTKPPHW 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccCCCCCCCCcCCC
Confidence 44445777777777777777778888888754 455554332333455677776
No 96
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=60.50 E-value=6.6 Score=46.72 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=18.3
Q ss_pred eEEeeCchhHHHHHhhhHHHHHHHHHh
Q 021554 67 FCIIEGPETVQDFAKMELQEIHDNIRS 93 (311)
Q Consensus 67 ~~~~~~~~~~~d~~~m~~~ei~~ni~~ 93 (311)
.+-|.| -++.|+.+|.++|+.+=++.
T Consensus 1326 ~v~i~g-~~i~e~~~l~i~~~~~~~~~ 1351 (1809)
T PRK00635 1326 CVRIHN-TSLSDIYQEDVTFLKKFLLT 1351 (1809)
T ss_pred eeeECC-eeHHHHHhCCHHHHHHHHHh
Confidence 344555 56889999998888775543
No 97
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=60.28 E-value=1.7 Score=42.55 Aligned_cols=35 Identities=31% Similarity=0.671 Sum_probs=29.8
Q ss_pred ceeCCCCCCCcee----------------eCCCCCCeeEEeceeeCCCCCC
Q 021554 275 TERCSNCSGSGKV----------------MCPTCLCTGMAMASEHDPRIDP 309 (311)
Q Consensus 275 ~~rCp~C~G~GKv----------------~CptC~GtG~v~a~EhdprIdp 309 (311)
+..|.+|.-+++. .|.+|++.=++.--|.||-.||
T Consensus 225 R~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~C~sYlKilyqekdp~vea 275 (308)
T COG3058 225 RVKCSNCEQSKKLHYWSLESSELAAVKAETCGDCNSYLKILYQEKDPKVEA 275 (308)
T ss_pred HHHhccccccCCccceeccchhhhHhhhhcCCcHHHHHHHHHHhcCCcccc
Confidence 5679999988764 6999999888888999999887
No 98
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=59.90 E-value=4.7 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.795 Sum_probs=16.5
Q ss_pred ecccccccee---------ecCCCCcccceE
Q 021554 233 RCKYCLGTGY---------LACARCSNTGSL 254 (311)
Q Consensus 233 ~C~~C~GTG~---------~~C~~C~GSG~v 254 (311)
+|+.|+|.|. ..|+.|+|+.+.
T Consensus 722 ~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 722 ACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 5888888875 368888887765
No 99
>PRK04023 DNA polymerase II large subunit; Validated
Probab=57.20 E-value=8.1 Score=43.68 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=30.5
Q ss_pred ceeeccccccce-eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce-eeCCCCCC
Q 021554 230 EQKRCKYCLGTG-YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLC 294 (311)
Q Consensus 230 ~~k~C~~C~GTG-~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK-v~CptC~G 294 (311)
..+.|+.|.-.+ ...|+.|+..- . ....||.|.-... ..|+.|.-
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~T-----e---------------~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHT-----E---------------PVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCC-----C---------------cceeCccccCcCCCCcCCCCCC
Confidence 456899998543 47899998761 0 1246999965443 37999954
No 100
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=56.75 E-value=12 Score=24.90 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=7.6
Q ss_pred ecCCCCcccceE
Q 021554 243 LACARCSNTGSL 254 (311)
Q Consensus 243 ~~C~~C~GSG~v 254 (311)
+.|++|+..=.+
T Consensus 3 ~~CP~C~~~~~v 14 (38)
T TIGR02098 3 IQCPNCKTSFRV 14 (38)
T ss_pred EECCCCCCEEEe
Confidence 467777765444
No 101
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=54.94 E-value=14 Score=30.78 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CceeCCCCC----------CCceeeCCCCCCeeEEeceeeCCCCCC
Q 021554 274 KTERCSNCS----------GSGKVMCPTCLCTGMAMASEHDPRIDP 309 (311)
Q Consensus 274 ~~~rCp~C~----------G~GKv~CptC~GtG~v~a~EhdprIdp 309 (311)
+...||+|+ |.+.+.|+.|.-.-....+.-|-.||=
T Consensus 20 t~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~~V~~l~epIDV 65 (99)
T PRK14892 20 KIFECPRCGKVSISVKIKKNIAIITCGNCGLYTEFEVPSVYDEVDV 65 (99)
T ss_pred cEeECCCCCCeEeeeecCCCcceEECCCCCCccCEECCccccchhh
Confidence 344566665 345668999965444445556666653
No 102
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=54.91 E-value=23 Score=35.04 Aligned_cols=78 Identities=12% Similarity=0.194 Sum_probs=46.6
Q ss_pred CCcccccCCCCCCCCCCCCccce-eecccCCcCCCCCCCCcc----c---ccCCCCce--EEeeCchhHHHHHhhhHHHH
Q 021554 18 KPLIPYNYHGGNSRFRRLNSNWR-CRASEPESSSFAPSIDAE----S---ADKNAAGF--CIIEGPETVQDFAKMELQEI 87 (311)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~s~~~~~~~~~----~---~~~~~~~~--~~~~~~~~~~d~~~m~~~ei 87 (311)
-|||+.|.+.- + ..+..|. .++-.-.=.|..+..... + .....-|+ .|||+|+-...|+.|..++|
T Consensus 52 CPfcpgne~~t-~---~~~~~w~~~rv~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eViv~sp~H~~~l~~~~~~~i 127 (346)
T PRK11720 52 CFLCPGNTRVT-G---DVNPDYTGTYVFTNDFAALMPDTPDAPESDDPLFRCQSARGTSRVICFSPDHSKTLPELSVAAL 127 (346)
T ss_pred CCCCCCCCCCC-C---CCCCCCCEEEEEcCCCchhccCCCCCCcccCcccccCccceEEEEEEECCCcCCChhHCCHHHH
Confidence 36666655542 2 2234787 655554444433221111 0 01224444 49999999999999999999
Q ss_pred HHHHHhhhhhhh
Q 021554 88 HDNIRSRRNKIF 99 (311)
Q Consensus 88 ~~ni~~r~~ki~ 99 (311)
++=|..=+++.-
T Consensus 128 ~~v~~~~~~r~~ 139 (346)
T PRK11720 128 REVVDTWQEQTA 139 (346)
T ss_pred HHHHHHHHHHHH
Confidence 997776666543
No 103
>PRK04406 hypothetical protein; Provisional
Probab=54.50 E-value=41 Score=26.57 Aligned_cols=48 Identities=13% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhc-CCCccccCCCCCCC
Q 021554 84 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL-GISKEEQDNELPSF 133 (311)
Q Consensus 84 ~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~-g~~~~~~~~~~~~~ 133 (311)
++++-+-|..-+..|-.|-.++|.| -+||+.++. +.....++.+.|+|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L--~~rl~~~~~~~~~~~~~e~pPPHY 75 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV--VGKVKNMDSSNLADPAEETPPPHY 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccccCCCCCCCCCccCC
Confidence 5666666666666666677777777 356666653 23344556678876
No 104
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=54.50 E-value=13 Score=42.92 Aligned_cols=44 Identities=27% Similarity=0.739 Sum_probs=29.5
Q ss_pred eeeccccccce-eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCC------ceeeCCCCCC
Q 021554 231 QKRCKYCLGTG-YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS------GKVMCPTCLC 294 (311)
Q Consensus 231 ~k~C~~C~GTG-~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~------GKv~CptC~G 294 (311)
...|+.|.... ...|+.|...=. ....|+.|+.. +...|+.|.-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te--------------------~vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTE--------------------PVYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCC--------------------CceeCccCCCccCCCccccccCCCCCC
Confidence 56899998644 368999986521 12269999873 2347999954
No 105
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.42 E-value=57 Score=32.40 Aligned_cols=34 Identities=29% Similarity=0.503 Sum_probs=23.5
Q ss_pred cccCCCCCCCCCCCCCCCccc-----------hhhHHHHHHHHHH
Q 021554 124 EEQDNELPSFPSFIPFLPPLS-----------AANLKVYYATCFS 157 (311)
Q Consensus 124 ~~~~~~~~~~~s~~p~~~~~~-----------~~~~~~~~~~~~~ 157 (311)
..++|.-|-.||+||+.|=.= .++.|..|.+|..
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~ 140 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMG 140 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHH
Confidence 567777888999999998532 3556665555544
No 106
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=53.29 E-value=7.8 Score=43.10 Aligned_cols=24 Identities=29% Similarity=0.767 Sum_probs=18.7
Q ss_pred eeCCCCCCCcee------------eCCCCCCeeEEe
Q 021554 276 ERCSNCSGSGKV------------MCPTCLCTGMAM 299 (311)
Q Consensus 276 ~rCp~C~G~GKv------------~CptC~GtG~v~ 299 (311)
-+|..|+|.|.+ +|+.|+|+-+-.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCccccc
Confidence 679999998864 699998876543
No 107
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=52.23 E-value=5.4 Score=32.73 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=21.6
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
..|..|+|.|........-.-+| +.--..|++|+|+|..
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G------~pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFG------VPVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHHhHhccC------CchhhhhhhhcCCCCC
Confidence 46777788876543222111112 2345678888888753
No 108
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=51.30 E-value=36 Score=26.13 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=26.7
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhh--cCCCccccCCCCCCC
Q 021554 77 QDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE--LGISKEEQDNELPSF 133 (311)
Q Consensus 77 ~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~--~g~~~~~~~~~~~~~ 133 (311)
-=|..-.++++.+-+..-..+|=-|=++++.|+- ||+..+ .+.....++++.|+|
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~~~~~~~~~~~~~~~PPHY 69 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE--RLRELEDPSGSADPPEEEPPPHY 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccCCCCCCCCCCcCCC
Confidence 3455556888888888888888888888888875 444443 233344555667776
No 109
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=50.90 E-value=13 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=8.4
Q ss_pred ecCCCCcccceEE
Q 021554 243 LACARCSNTGSLV 255 (311)
Q Consensus 243 ~~C~~C~GSG~v~ 255 (311)
+.|++|+..-.+.
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4677777666553
No 110
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=50.49 E-value=9.6 Score=29.76 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=11.7
Q ss_pred eeCCCCCCeeEEeceee
Q 021554 287 VMCPTCLCTGMAMASEH 303 (311)
Q Consensus 287 v~CptC~GtG~v~a~Eh 303 (311)
+.|..|...|-...+|+
T Consensus 28 v~C~~CgA~~~~~~te~ 44 (64)
T PRK09710 28 AKCNGCESRTGYGGSEK 44 (64)
T ss_pred EEcCCCCcCcccccCHH
Confidence 46888877776666654
No 111
>PRK02119 hypothetical protein; Provisional
Probab=48.78 E-value=77 Score=24.80 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhcC-CCccccCCCCCCC
Q 021554 82 MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELG-ISKEEQDNELPSF 133 (311)
Q Consensus 82 m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~g-~~~~~~~~~~~~~ 133 (311)
-.++++-+-|..-+..|-.|-+++|.|+ +||+..+-+ .....++.+.|+|
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~~~~~~~~~~e~~PPHY 73 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQPSNIASQAEETPPPHY 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccCCCCCCCCCcCCC
Confidence 3367777766666666767777788774 455555432 2334456677876
No 112
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=47.97 E-value=13 Score=32.92 Aligned_cols=28 Identities=7% Similarity=0.262 Sum_probs=20.8
Q ss_pred hhHHHHHhhhHHHHHHHHHhhhhhhhhh
Q 021554 74 ETVQDFAKMELQEIHDNIRSRRNKIFLH 101 (311)
Q Consensus 74 ~~~~d~~~m~~~ei~~ni~~r~~ki~~~ 101 (311)
+.|.+..+.+.++|++.|.+-|.++--+
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~ 30 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAA 30 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4577777888888888888777766544
No 113
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=47.78 E-value=19 Score=38.89 Aligned_cols=34 Identities=21% Similarity=0.583 Sum_probs=31.3
Q ss_pred EeeCchhHHHHHhhhHHHHHHHHHhhhhhhhhhHHHHH
Q 021554 69 IIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVR 106 (311)
Q Consensus 69 ~~~~~~~~~d~~~m~~~ei~~ni~~r~~ki~~~~eevr 106 (311)
+.++|++|++| ++|+.++.+.|-.|+|-+|.+++
T Consensus 299 ~a~~pk~V~~F----l~~Ls~k~~~~~~kel~~i~~mk 332 (704)
T KOG2090|consen 299 LAKNPKTVRSF----LEELSEKLSEKTDKELAVIRDMK 332 (704)
T ss_pred ccCChHHHHHH----HHHHHHhhhHHHHHHHHHHHHHH
Confidence 58999999999 57999999999999999999983
No 114
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=47.42 E-value=45 Score=32.39 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=44.3
Q ss_pred CCcccccCCCCCCCCCCCCccceeecccCCcCCCCCCCCccc-------ccCCCCc--eEEeeCchhHHHHHhhhHHHHH
Q 021554 18 KPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAES-------ADKNAAG--FCIIEGPETVQDFAKMELQEIH 88 (311)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~d~~~m~~~ei~ 88 (311)
-|||.-|.+...+ . .+..|..++-.-.=.|..+...... .....-| .-|||+|+-..+|++|+.++|.
T Consensus 40 CPfCpg~~~~~~~-~--~~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i~ 116 (329)
T cd00608 40 CPLCPGNERADTG-E--QNPDYDVRVFENDFPALKPDAPAPEDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEIR 116 (329)
T ss_pred CCcCCCCCCCCCC-C--CCCCCeEEEECCCCccccCCCCCCcccCCcccccCCcceeEEEEEECCcccCChhhCCHHHHH
Confidence 4666655544111 1 2346886665554444332111110 0111333 4589999999999999999999
Q ss_pred HHHHhhhhh
Q 021554 89 DNIRSRRNK 97 (311)
Q Consensus 89 ~ni~~r~~k 97 (311)
+=|..=+++
T Consensus 117 ~v~~~~~~r 125 (329)
T cd00608 117 EVVEAWAER 125 (329)
T ss_pred HHHHHHHHH
Confidence 966654443
No 115
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=45.58 E-value=14 Score=27.96 Aligned_cols=33 Identities=30% Similarity=0.713 Sum_probs=23.6
Q ss_pred eeCCCCCCCce-eeCCCCCCeeEEeceeeCCCCCCCC
Q 021554 276 ERCSNCSGSGK-VMCPTCLCTGMAMASEHDPRIDPFD 311 (311)
Q Consensus 276 ~rCp~C~G~GK-v~CptC~GtG~v~a~EhdprIdpf~ 311 (311)
.+|+.|+-..- ..||.|.+ ....-|-+|+.|=|
T Consensus 6 r~C~~CgvYTLk~~CP~CG~---~t~~~~P~rfSp~D 39 (56)
T PRK13130 6 RKCPKCGVYTLKEICPVCGG---KTKNPHPPRFSPED 39 (56)
T ss_pred eECCCCCCEEccccCcCCCC---CCCCCCCCCCCCCC
Confidence 46888886543 47999943 46677888888854
No 116
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.95 E-value=97 Score=24.14 Aligned_cols=49 Identities=12% Similarity=0.354 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhcC-CCccccCCCCCCC
Q 021554 83 ELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELG-ISKEEQDNELPSF 133 (311)
Q Consensus 83 ~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~g-~~~~~~~~~~~~~ 133 (311)
-++++-+=|..-+..|--|-+++|.|+ +||+..+-+ +....++.+.|+|
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~~~~~~~~~~e~~PPHY 72 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQPSNIASQAEETPPPHY 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhccccCCCCCCCCCcCCC
Confidence 366777777777777777777888884 355665532 2334456677876
No 117
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=43.85 E-value=16 Score=28.10 Aligned_cols=32 Identities=31% Similarity=0.698 Sum_probs=20.1
Q ss_pred eCCCCCCCcee-eCCCCCCeeEEeceeeCCCCCCCC
Q 021554 277 RCSNCSGSGKV-MCPTCLCTGMAMASEHDPRIDPFD 311 (311)
Q Consensus 277 rCp~C~G~GKv-~CptC~GtG~v~a~EhdprIdpf~ 311 (311)
.|+.|+--.-. +||.|.| ....-|-||++|=|
T Consensus 7 kC~~cg~YTLke~Cp~CG~---~t~~~~PprFSPeD 39 (59)
T COG2260 7 KCPKCGRYTLKEKCPVCGG---DTKVPHPPRFSPED 39 (59)
T ss_pred cCcCCCceeecccCCCCCC---ccccCCCCCCCccc
Confidence 57777654433 7888844 34455778887754
No 118
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=42.83 E-value=12 Score=31.38 Aligned_cols=7 Identities=43% Similarity=0.785 Sum_probs=4.3
Q ss_pred ecCCCCc
Q 021554 243 LACARCS 249 (311)
Q Consensus 243 ~~C~~C~ 249 (311)
..|..|+
T Consensus 71 ~~C~~Cg 77 (113)
T PRK12380 71 AWCWDCS 77 (113)
T ss_pred EEcccCC
Confidence 4566665
No 119
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.81 E-value=18 Score=38.94 Aligned_cols=40 Identities=23% Similarity=0.683 Sum_probs=24.8
Q ss_pred ecccccc---ceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCC---ceeeCCCCC
Q 021554 233 RCKYCLG---TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS---GKVMCPTCL 293 (311)
Q Consensus 233 ~C~~C~G---TG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~---GKv~CptC~ 293 (311)
.|+.|+. .|..-|..|+.+-. ...|+.|+-. |..-|+.|.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~---------------------~~~Cp~CG~~~~~~~~fC~~CG 48 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLT---------------------HKPCPQCGTEVPVDEAHCPNCG 48 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCC---------------------CCcCCCCCCCCCcccccccccC
Confidence 6888864 45678888843321 1258888754 444688884
No 120
>PF14353 CpXC: CpXC protein
Probab=41.64 E-value=26 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.500 Sum_probs=22.3
Q ss_pred ecCCCCcccceEEeeecccccCCCCCC------C-CCCCceeCCCCCCCcee
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQP------L-SAPKTERCSNCSGSGKV 287 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~------~-~~q~~~rCp~C~G~GKv 287 (311)
++|+.|+..+....-.-+ +....| + ..-...+||+|+..+.+
T Consensus 2 itCP~C~~~~~~~v~~~I---~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSI---NADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEE---cCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 578888888876542222 111000 0 00135678888877665
No 121
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=40.18 E-value=18 Score=26.20 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.7
Q ss_pred ecCCCCcccceE
Q 021554 243 LACARCSNTGSL 254 (311)
Q Consensus 243 ~~C~~C~GSG~v 254 (311)
++|+-|.|....
T Consensus 2 kPCPfCGg~~~~ 13 (53)
T TIGR03655 2 KPCPFCGGADVY 13 (53)
T ss_pred CCCCCCCCccee
Confidence 579999988874
No 122
>PRK05978 hypothetical protein; Provisional
Probab=40.05 E-value=14 Score=32.85 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=5.0
Q ss_pred ceeCCCCC
Q 021554 275 TERCSNCS 282 (311)
Q Consensus 275 ~~rCp~C~ 282 (311)
+.+||+|+
T Consensus 33 ~grCP~CG 40 (148)
T PRK05978 33 RGRCPACG 40 (148)
T ss_pred cCcCCCCC
Confidence 34677775
No 123
>PRK11032 hypothetical protein; Provisional
Probab=38.72 E-value=21 Score=32.10 Aligned_cols=7 Identities=29% Similarity=0.890 Sum_probs=3.5
Q ss_pred eeecccc
Q 021554 231 QKRCKYC 237 (311)
Q Consensus 231 ~k~C~~C 237 (311)
...|..|
T Consensus 124 ~LvC~~C 130 (160)
T PRK11032 124 NLVCEKC 130 (160)
T ss_pred eEEecCC
Confidence 3355555
No 124
>PRK00420 hypothetical protein; Validated
Probab=37.19 E-value=22 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.740 Sum_probs=14.2
Q ss_pred ceeCCCCCC------CceeeCCCCCC
Q 021554 275 TERCSNCSG------SGKVMCPTCLC 294 (311)
Q Consensus 275 ~~rCp~C~G------~GKv~CptC~G 294 (311)
...||.|+. .|++.||.|.-
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 357888885 46778888843
No 125
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=36.43 E-value=12 Score=41.71 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=0.0
Q ss_pred eeeccccccce-eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce-eeCCCCCCe
Q 021554 231 QKRCKYCLGTG-YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLCT 295 (311)
Q Consensus 231 ~k~C~~C~GTG-~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK-v~CptC~Gt 295 (311)
...|+.|.-.+ +..|+.|.+.=.. .-.||.|.-.-. ..|++|.-.
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~--------------------~~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEP--------------------VYVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcccc--------------------ceeccccccccCcccccccccc
Confidence 45788887554 4788888753221 235999987543 389999544
No 126
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.37 E-value=12 Score=31.10 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.8
Q ss_pred eecCCCCcccc
Q 021554 242 YLACARCSNTG 252 (311)
Q Consensus 242 ~~~C~~C~GSG 252 (311)
...|..|+-..
T Consensus 70 ~~~C~~Cg~~~ 80 (113)
T PF01155_consen 70 RARCRDCGHEF 80 (113)
T ss_dssp EEEETTTS-EE
T ss_pred cEECCCCCCEE
Confidence 45666665444
No 127
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.84 E-value=27 Score=36.02 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=17.7
Q ss_pred EEeeeEeecceeecccccc-------ceeecCCCCc
Q 021554 221 VEVNNVKQQEQKRCKYCLG-------TGYLACARCS 249 (311)
Q Consensus 221 vEinnVk~q~~k~C~~C~G-------TG~~~C~~C~ 249 (311)
+-+.++. ....|+.|.+ .+.+.|..|+
T Consensus 214 ~~C~~Cg--~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 214 LLCRSCG--YILCCPNCDVSLTYHKKEGKLRCHYCG 247 (505)
T ss_pred eEhhhCc--CccCCCCCCCceEEecCCCeEEcCCCc
Confidence 4455544 4568999984 3446788886
No 128
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=35.47 E-value=32 Score=30.23 Aligned_cols=20 Identities=35% Similarity=1.081 Sum_probs=15.7
Q ss_pred ceeCCCCCC-----CceeeCCCCCC
Q 021554 275 TERCSNCSG-----SGKVMCPTCLC 294 (311)
Q Consensus 275 ~~rCp~C~G-----~GKv~CptC~G 294 (311)
...||.|+- .|.+.||.|.-
T Consensus 28 ~~hCp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 28 AKHCPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred HhhCcccCCcceeeCCeEECCCCCc
Confidence 467999985 58899999953
No 129
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=34.69 E-value=31 Score=23.67 Aligned_cols=9 Identities=33% Similarity=1.162 Sum_probs=5.7
Q ss_pred ceeCCCCCC
Q 021554 275 TERCSNCSG 283 (311)
Q Consensus 275 ~~rCp~C~G 283 (311)
...|+.|+|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 355777766
No 130
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=34.27 E-value=12 Score=31.82 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhcCC
Q 021554 97 KIFLHMEEVRRLRIQQRIKNAELGI 121 (311)
Q Consensus 97 ki~~~~eevrrlr~q~r~k~~~~g~ 121 (311)
++.|+=-.+.|.+.|+.|++.+.+.
T Consensus 13 et~LleAq~~~akaq~el~~~~~~~ 37 (119)
T TIGR03021 13 ETALLEAQLARAKAQNELEEAERGG 37 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Confidence 5667777799999999999887643
No 131
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.12 E-value=19 Score=30.12 Aligned_cols=8 Identities=38% Similarity=0.862 Sum_probs=5.2
Q ss_pred eecCCCCc
Q 021554 242 YLACARCS 249 (311)
Q Consensus 242 ~~~C~~C~ 249 (311)
...|..|+
T Consensus 70 ~~~C~~Cg 77 (115)
T TIGR00100 70 ECECEDCS 77 (115)
T ss_pred EEEcccCC
Confidence 35677776
No 132
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=33.69 E-value=57 Score=32.35 Aligned_cols=75 Identities=9% Similarity=0.140 Sum_probs=45.7
Q ss_pred eEEeeCchhHHHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhc-CCCccccCCCCCCCCC---CCCCCCc
Q 021554 67 FCIIEGPETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL-GISKEEQDNELPSFPS---FIPFLPP 142 (311)
Q Consensus 67 ~~~~~~~~~~~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~-g~~~~~~~~~~~~~~s---~~p~~~~ 142 (311)
..|||+|+--..|++|..++|++=|..=+++.- .|+ .||+-+-+ -...++--..+++==| ..||+|+
T Consensus 107 eVii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~-------~l~--~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~ 177 (347)
T TIGR00209 107 RVICFSPDHSKTLPELSVAALTEIVKTWQEQTA-------ELG--KTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPN 177 (347)
T ss_pred EEEEeCCCccCChhHCCHHHHHHHHHHHHHHHH-------HHH--hCCcEEEEEeecCcccCcCCCCCceeeeeCCCCCh
Confidence 359999999999999999999997766665543 333 34543322 0001112223443323 4789999
Q ss_pred cchhhHHH
Q 021554 143 LSAANLKV 150 (311)
Q Consensus 143 ~~~~~~~~ 150 (311)
.-.+.++.
T Consensus 178 ~~~~e~~~ 185 (347)
T TIGR00209 178 EVEREDRL 185 (347)
T ss_pred HHHHHHHH
Confidence 66655544
No 133
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.23 E-value=48 Score=25.38 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=28.3
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhh
Q 021554 76 VQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNA 117 (311)
Q Consensus 76 ~~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~ 117 (311)
=+|+..|.++||++ +|-+|=.||-|++=...-|.+
T Consensus 15 g~dLs~lSv~EL~~-------RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 15 GEDLSLLSVEELEE-------RIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred CCCchhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999988 677888999999876666554
No 134
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.69 E-value=1.3e+02 Score=28.71 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=17.1
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccc
Q 021554 142 PLSAANLKVYYATCFSLIAGVILFGG 167 (311)
Q Consensus 142 ~~~~~~~~~~~~~~~~~v~~i~~fgg 167 (311)
.||++.++..|...-.++...|--||
T Consensus 192 ~l~~~~~~~l~~a~~~vl~~ai~~gg 217 (272)
T PRK14810 192 SLSRERLRKLHDAIGEVLREAIELGG 217 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 37999999887766665555554433
No 135
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=32.09 E-value=27 Score=27.90 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=11.1
Q ss_pred CCceeeCCCCCCeeEEeceeeCCCC
Q 021554 283 GSGKVMCPTCLCTGMAMASEHDPRI 307 (311)
Q Consensus 283 G~GKv~CptC~GtG~v~a~EhdprI 307 (311)
|.|.+.|..|.-.=.......+-.|
T Consensus 43 ~~~~~~C~~Cg~~~~~~i~~L~epi 67 (81)
T PF05129_consen 43 GIGILSCRVCGESFQTKINPLSEPI 67 (81)
T ss_dssp TEEEEEESSS--EEEEE--SS--TT
T ss_pred CEEEEEecCCCCeEEEccCccCccc
Confidence 5567789999443333333333333
No 136
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.03 E-value=1.4e+02 Score=28.46 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=15.5
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcc
Q 021554 143 LSAANLKVYYATCFSLIAGVILFG 166 (311)
Q Consensus 143 ~~~~~~~~~~~~~~~~v~~i~~fg 166 (311)
||++.++.++...-.++..-|-.|
T Consensus 194 Ls~~~~~~L~~~i~~vL~~ai~~g 217 (272)
T TIGR00577 194 LSKEECELLHRAIKEVLRKAIEMG 217 (272)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcC
Confidence 699999988776665444444333
No 137
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=31.79 E-value=24 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=8.0
Q ss_pred ecCCCCcccceEEe
Q 021554 243 LACARCSNTGSLVL 256 (311)
Q Consensus 243 ~~C~~C~GSG~v~~ 256 (311)
.+|+.|.|+..-..
T Consensus 4 ~pCP~CGG~DrFri 17 (40)
T PF08273_consen 4 GPCPICGGKDRFRI 17 (40)
T ss_dssp E--TTTT-TTTEEE
T ss_pred CCCCCCcCcccccc
Confidence 57888888877653
No 138
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.95 E-value=29 Score=37.16 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=17.2
Q ss_pred EeeeEeecceeeccccccc-------eeecCCCCcc
Q 021554 222 EVNNVKQQEQKRCKYCLGT-------GYLACARCSN 250 (311)
Q Consensus 222 EinnVk~q~~k~C~~C~GT-------G~~~C~~C~G 250 (311)
-+.++. ....|+.|.+. +...|..|+-
T Consensus 383 ~C~~Cg--~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~ 416 (679)
T PRK05580 383 LCRDCG--WVAECPHCDASLTLHRFQRRLRCHHCGY 416 (679)
T ss_pred EhhhCc--CccCCCCCCCceeEECCCCeEECCCCcC
Confidence 344444 45689999864 3367888873
No 139
>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=31 Score=37.88 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=31.5
Q ss_pred hHHHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHH---Hhhhhhhh
Q 021554 75 TVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRI---QQRIKNAE 118 (311)
Q Consensus 75 ~~~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~---q~r~k~~~ 118 (311)
.+||||+|++.-|++|..+|=-|= .-||++--+-+ ||++|.-+
T Consensus 644 ~~~~fa~~~~~~~~q~~a~~s~~~-~g~ed~~~~~~~~~q~~~k~y~ 689 (784)
T KOG1139|consen 644 AAKEFAKRRMEAIMQNSAKKSAQT-EGMEDAEVNKVDPSQQNRKVYE 689 (784)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhcc-cCCChHHHhhhCcccCCccCCc
Confidence 578999999999999988876554 45566555555 77777655
No 140
>PF15616 TerY-C: TerY-C metal binding domain
Probab=30.38 E-value=46 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=14.5
Q ss_pred eeeEeecceeeccccccc-eeecCCCC
Q 021554 223 VNNVKQQEQKRCKYCLGT-GYLACARC 248 (311)
Q Consensus 223 innVk~q~~k~C~~C~GT-G~~~C~~C 248 (311)
+|.-.......|++|.-. +...| .|
T Consensus 69 vntseL~g~PgCP~CGn~~~fa~C-~C 94 (131)
T PF15616_consen 69 VNTSELIGAPGCPHCGNQYAFAVC-GC 94 (131)
T ss_pred EehHHhcCCCCCCCCcChhcEEEe-cC
Confidence 333333445789988754 55666 45
No 141
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=29.93 E-value=61 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhh
Q 021554 77 QDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIK 115 (311)
Q Consensus 77 ~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k 115 (311)
+|+-+|..+||++.|..=+. |.-.||.|..+.
T Consensus 2 ~elr~ls~~eL~~~l~elk~-------eL~~Lr~q~~~~ 33 (58)
T PF00831_consen 2 KELRELSDEELQEKLEELKK-------ELFNLRFQKATG 33 (58)
T ss_dssp HHHCHSHHHHHHHHHHHHHH-------HHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhc
Confidence 68889999999997776554 666889988773
No 142
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=29.62 E-value=1.5e+02 Score=28.07 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=16.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccc
Q 021554 143 LSAANLKVYYATCFSLIAGVILFGG 167 (311)
Q Consensus 143 ~~~~~~~~~~~~~~~~v~~i~~fgg 167 (311)
||++.++.+|...-.++...|-.||
T Consensus 194 Ls~~~~~~L~~~~~~vl~~ai~~gg 218 (274)
T PRK01103 194 LSRAEAERLVDAIKAVLAEAIEQGG 218 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6899998887776665554444443
No 143
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=29.51 E-value=37 Score=33.26 Aligned_cols=15 Identities=67% Similarity=1.362 Sum_probs=10.0
Q ss_pred eCCCCCCeeEEeceeeCCCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRIDP 309 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprIdp 309 (311)
.|+.|. .+|=|||||
T Consensus 131 ~C~~cg-------~~~fPR~dP 145 (279)
T COG2816 131 VCPKCG-------HEHFPRIDP 145 (279)
T ss_pred eCCCCC-------CccCCCCCC
Confidence 566663 566777777
No 144
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=29.44 E-value=1.1e+02 Score=30.78 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred eeecCCCCCcccccCCCCCCCCCCCCccceeecccCCcCCCCCCCCcccccCC-----CCc--eEEeeCchhHHHHHhhh
Q 021554 11 AGLYPAKKPLIPYNYHGGNSRFRRLNSNWRCRASEPESSSFAPSIDAESADKN-----AAG--FCIIEGPETVQDFAKME 83 (311)
Q Consensus 11 a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~d~~~m~ 83 (311)
+.||.+.-|||.-+-++.--||++-+..|-+---=|+-+-+.|+-+-..++.. .-| |.|+++|..---++.|+
T Consensus 47 ~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~v~G~c~Vicf~Pnh~ltLp~m~ 126 (354)
T KOG2958|consen 47 TPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTISVKGVCKVICFSPNHNLTLPLMD 126 (354)
T ss_pred CCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhheeecceeEEEEeCCccccccccCC
Confidence 45788788888888887778899888888543333333334444443333311 334 55999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q 021554 84 LQEIHDNIRSRRNK 97 (311)
Q Consensus 84 ~~ei~~ni~~r~~k 97 (311)
..||++=|.+-...
T Consensus 127 ~~~i~~vv~aw~~~ 140 (354)
T KOG2958|consen 127 VVEIRDVVDAWKKL 140 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999977665543
No 145
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=29.33 E-value=34 Score=23.68 Aligned_cols=9 Identities=22% Similarity=0.881 Sum_probs=5.0
Q ss_pred cCCCCcccc
Q 021554 244 ACARCSNTG 252 (311)
Q Consensus 244 ~C~~C~GSG 252 (311)
.|+.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466666544
No 146
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.10 E-value=66 Score=29.90 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.5
Q ss_pred CCCccc
Q 021554 139 FLPPLS 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
|..++.
T Consensus 214 ~~~~~~ 219 (262)
T PF14257_consen 214 FGSRFR 219 (262)
T ss_pred cchHHH
Confidence 344443
No 147
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=28.95 E-value=34 Score=37.48 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=30.2
Q ss_pred EEEeeeEeecceeecccccc-------ceeecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCce
Q 021554 220 IVEVNNVKQQEQKRCKYCLG-------TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK 286 (311)
Q Consensus 220 vvEinnVk~q~~k~C~~C~G-------TG~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GK 286 (311)
++-|+.+. ....|+.|.. ++.+.|..|+-.. .....||+|++.--
T Consensus 435 ~l~C~~Cg--~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~--------------------~~p~~Cp~Cgs~~L 486 (730)
T COG1198 435 LLLCRDCG--YIAECPNCDSPLTLHKATGQLRCHYCGYQE--------------------PIPQSCPECGSEHL 486 (730)
T ss_pred eeecccCC--CcccCCCCCcceEEecCCCeeEeCCCCCCC--------------------CCCCCCCCCCCCee
Confidence 35555555 4568999985 3568899887442 12457999999843
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.77 E-value=39 Score=36.47 Aligned_cols=20 Identities=35% Similarity=0.875 Sum_probs=14.3
Q ss_pred ceeCCCCCCC-------ceeeCCCCCC
Q 021554 275 TERCSNCSGS-------GKVMCPTCLC 294 (311)
Q Consensus 275 ~~rCp~C~G~-------GKv~CptC~G 294 (311)
..+|++|++. +...|+.|.-
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGR 418 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcC
Confidence 4579999964 3457999953
No 149
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.36 E-value=2e+02 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=20.0
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhccccccceeeeecccCCchhhhh
Q 021554 142 PLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADF 187 (311)
Q Consensus 142 ~~~~~~~~~~~~~~~~~v~~i~~fggl~ap~~e~klglgg~~y~~f 187 (311)
.||++.++.++...-..+..-|- .||+++.||
T Consensus 202 ~Ls~~~~~~L~~~i~~vl~~ai~--------------~gg~~~~~~ 233 (282)
T PRK13945 202 QLKKKQLERLREAIIEVLKTSIG--------------AGGTTFSDF 233 (282)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH--------------cCCCccccc
Confidence 37899888876665554433332 456777776
No 150
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=27.34 E-value=1.9e+02 Score=27.50 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=17.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhhccc
Q 021554 143 LSAANLKVYYATCFSLIAGVILFGG 167 (311)
Q Consensus 143 ~~~~~~~~~~~~~~~~v~~i~~fgg 167 (311)
||++.++.++...-..+..-|-.||
T Consensus 182 Ls~~~~~~L~~~i~~vl~~ai~~gg 206 (269)
T PRK14811 182 LKAPEARRLYRAIREVMAEAVEAGG 206 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7899998887766665555555444
No 151
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=27.20 E-value=42 Score=23.39 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=8.5
Q ss_pred ecCCCCcccceEE
Q 021554 243 LACARCSNTGSLV 255 (311)
Q Consensus 243 ~~C~~C~GSG~v~ 255 (311)
.+|+.|.|+..-.
T Consensus 4 ~pCP~CGG~DrFr 16 (37)
T smart00778 4 GPCPNCGGSDRFR 16 (37)
T ss_pred cCCCCCCCccccc
Confidence 4677777766554
No 152
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.17 E-value=48 Score=22.52 Aligned_cols=12 Identities=17% Similarity=0.722 Sum_probs=7.3
Q ss_pred ecCCCCcccceE
Q 021554 243 LACARCSNTGSL 254 (311)
Q Consensus 243 ~~C~~C~GSG~v 254 (311)
+.|++|+..=.+
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 467777665444
No 153
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=27.12 E-value=24 Score=35.88 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=13.8
Q ss_pred cCCeeeeeecceecee---eeeEEEEeee
Q 021554 200 VDPIVASFSGGAVGVI---SALMIVEVNN 225 (311)
Q Consensus 200 vDpIvasF~GGavGvi---sal~vvEinn 225 (311)
..+.|-.=+||.. +| -||.++.+|.
T Consensus 268 l~~~V~L~~Gg~l-vIe~TEALtvIDVNs 295 (414)
T TIGR00757 268 TQRKVWLPSGGYI-VIDQTEALTTIDVNS 295 (414)
T ss_pred cCCcEECCCCeEE-EEecCccEEEEEecC
Confidence 3344444455543 33 3777777776
No 154
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=26.69 E-value=1.2e+02 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHhhhhhhhhhHHHHH
Q 021554 81 KMELQEIHDNIRSRRNKIFLHMEEVR 106 (311)
Q Consensus 81 ~m~~~ei~~ni~~r~~ki~~~~eevr 106 (311)
.++.+|+|. ++.|..-|+|||=
T Consensus 69 ~~~~~e~q~----kK~KLl~mL~eVd 90 (140)
T PF07526_consen 69 PAERQELQR----KKAKLLSMLDEVD 90 (140)
T ss_pred hhhHHHHHH----HHHHHHHHHHHHH
Confidence 677778776 8999999999983
No 155
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=26.33 E-value=57 Score=28.83 Aligned_cols=16 Identities=38% Similarity=0.858 Sum_probs=11.3
Q ss_pred cceeecCCCCcccceE
Q 021554 239 GTGYLACARCSNTGSL 254 (311)
Q Consensus 239 GTG~~~C~~C~GSG~v 254 (311)
|.|...|.+|+-.=.+
T Consensus 109 g~G~l~C~~Cg~~~~~ 124 (146)
T PF07295_consen 109 GPGTLVCENCGHEVEL 124 (146)
T ss_pred cCceEecccCCCEEEe
Confidence 6788899999754333
No 156
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.06 E-value=47 Score=38.73 Aligned_cols=18 Identities=33% Similarity=1.049 Sum_probs=14.7
Q ss_pred eCCCCCCCce--eeCCCCCC
Q 021554 277 RCSNCSGSGK--VMCPTCLC 294 (311)
Q Consensus 277 rCp~C~G~GK--v~CptC~G 294 (311)
.||.|+..-. ..|+.|..
T Consensus 681 fCP~CGs~te~vy~CPsCGa 700 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGA 700 (1337)
T ss_pred cCcccCCcCCCceeCccCCC
Confidence 6999999863 37999965
No 157
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=25.06 E-value=36 Score=34.07 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=28.9
Q ss_pred cCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCCCeeEEe
Q 021554 244 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAM 299 (311)
Q Consensus 244 ~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~GtG~v~ 299 (311)
-+..-.|........+...++= -| .......|+.|+|.| |+.|+++|.+-
T Consensus 232 fl~~~fg~~~~~R~rpsyFPFT--eP-S~Evdv~~~~~~g~g---c~~ck~~~WiE 281 (339)
T PRK00488 232 FLKAFFGEDVKIRFRPSYFPFT--EP-SAEVDVSCFKCGGKG---CRVCKGTGWLE 281 (339)
T ss_pred HHHHHcCCCCeEEecCCCCCCC--CC-ceEEEEEEeccCCCc---ccccCCCCceE
Confidence 4555566555554444332210 01 112246699999877 99999998753
No 158
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=24.85 E-value=99 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=17.5
Q ss_pred cceeecccccccee-----ecCCCCcccceEE
Q 021554 229 QEQKRCKYCLGTGY-----LACARCSNTGSLV 255 (311)
Q Consensus 229 q~~k~C~~C~GTG~-----~~C~~C~GSG~v~ 255 (311)
.....|..|..... ..|+.|++.....
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp --EEEETTTS-EEECHHCCHH-SSSSSS-EEE
T ss_pred CCcEECCCCCCEEecCCCCCCCcCCcCCCcEE
Confidence 37789999987664 5799999987543
No 159
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.63 E-value=4.1e+02 Score=22.61 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021554 83 ELQEIHDNIRSRRNKIFLHMEEVRRLRI 110 (311)
Q Consensus 83 ~~~ei~~ni~~r~~ki~~~~eevrrlr~ 110 (311)
|+.++.+.+..=++.|--|+||--+|||
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888899999999999999999999
No 160
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.51 E-value=1.2e+02 Score=26.96 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=31.2
Q ss_pred cCCCCcccc-eEEeeecccccCCCCCCCCCCCceeCCCCCCCceeeCCCCCCeeEEeceeeCCCCCCCC
Q 021554 244 ACARCSNTG-SLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 311 (311)
Q Consensus 244 ~C~~C~GSG-~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv~CptC~GtG~v~a~EhdprIdpf~ 311 (311)
.||.|.+.- .+......+ .| ..+.....|++|+.+=...=+. ..-++...+.|=++.|||
T Consensus 2 ~cp~c~~~~~~~~~s~~~~--~~----~~~~~~~~c~~c~~~f~~~e~~--~~~~i~VIKRDG~~v~Fd 62 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAE--DG----NAIRRRRECLACGKRFTTFERV--ELVPLLVIKKDGRREPFD 62 (154)
T ss_pred cCCCCCCCCCEeEeccccC--CC----CceeeeeeccccCCcceEeEec--cCcccEEEecCCcCCCcC
Confidence 477777655 343332222 22 1122236799998874320000 001345678888888886
No 161
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=23.89 E-value=32 Score=35.04 Aligned_cols=13 Identities=46% Similarity=1.014 Sum_probs=8.3
Q ss_pred ceeCCCCCCCcee
Q 021554 275 TERCSNCSGSGKV 287 (311)
Q Consensus 275 ~~rCp~C~G~GKv 287 (311)
.+.||.|+|+|++
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 4567776666665
No 162
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=23.69 E-value=51 Score=32.96 Aligned_cols=22 Identities=41% Similarity=0.851 Sum_probs=18.2
Q ss_pred eeccccccceeecCCCCcccceEEe
Q 021554 232 KRCKYCLGTGYLACARCSNTGSLVL 256 (311)
Q Consensus 232 k~C~~C~GTG~~~C~~C~GSG~v~~ 256 (311)
..|..|.|.| |..|.++||+..
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEE
Confidence 4688899876 999999999864
No 163
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.10 E-value=39 Score=28.42 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=4.9
Q ss_pred eecCCCCc
Q 021554 242 YLACARCS 249 (311)
Q Consensus 242 ~~~C~~C~ 249 (311)
...|..|+
T Consensus 71 ~~~C~~Cg 78 (117)
T PRK00564 71 ELECKDCS 78 (117)
T ss_pred EEEhhhCC
Confidence 35677776
No 164
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.44 E-value=54 Score=24.30 Aligned_cols=20 Identities=30% Similarity=0.893 Sum_probs=13.3
Q ss_pred CceeCCCCCCCcee-------eCCCCC
Q 021554 274 KTERCSNCSGSGKV-------MCPTCL 293 (311)
Q Consensus 274 ~~~rCp~C~G~GKv-------~CptC~ 293 (311)
+.++||.|+...+. .|+.|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg 53 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCG 53 (69)
T ss_pred CccCccCcccccccccccceEEcCCCC
Confidence 45678888765443 688884
No 165
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=21.74 E-value=63 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=21.8
Q ss_pred ecCCCCcccceEEeeecc-cccCCCCCCCCCCCceeCCCCCCCc
Q 021554 243 LACARCSNTGSLVLIEPV-STVNGGDQPLSAPKTERCSNCSGSG 285 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~-s~c~G~~g~~~~q~~~rCp~C~G~G 285 (311)
+.|+.|++.|........ =.-+|. .......|++|+=+-
T Consensus 1 ~~Cp~C~~~~~~~~~~~~~IP~F~e----vii~sf~C~~CGyr~ 40 (192)
T TIGR00310 1 IDCPSCGGECETVMKTVNDIPYFGE----VLETSTICEHCGYRS 40 (192)
T ss_pred CcCCCCCCCCEEEEEEEcCCCCcce----EEEEEEECCCCCCcc
Confidence 369999988887442111 001220 112357799998764
No 166
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=21.69 E-value=65 Score=21.76 Aligned_cols=11 Identities=27% Similarity=1.038 Sum_probs=6.6
Q ss_pred cCCCCcccceE
Q 021554 244 ACARCSNTGSL 254 (311)
Q Consensus 244 ~C~~C~GSG~v 254 (311)
.|..|++.|.+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 46666666655
No 167
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.55 E-value=64 Score=24.61 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=6.4
Q ss_pred eecCCCCcccceE
Q 021554 242 YLACARCSNTGSL 254 (311)
Q Consensus 242 ~~~C~~C~GSG~v 254 (311)
++.|+.|++.-++
T Consensus 4 Wi~CP~CgnKTR~ 16 (55)
T PF14205_consen 4 WILCPICGNKTRL 16 (55)
T ss_pred EEECCCCCCccce
Confidence 3455555554443
No 168
>KOG2706 consensus Predicted membrane protein [Function unknown]
Probab=21.21 E-value=55 Score=33.22 Aligned_cols=77 Identities=30% Similarity=0.475 Sum_probs=43.3
Q ss_pred cccCCCCCCCCCCCCCCCccchhhHHHHH-HHHHHHHHH-h-----------hhccccccceeeeecccCCc---hhhhh
Q 021554 124 EEQDNELPSFPSFIPFLPPLSAANLKVYY-ATCFSLIAG-V-----------ILFGGLLAPSLELKLGIGGT---SYADF 187 (311)
Q Consensus 124 ~~~~~~~~~~~s~~p~~~~~~~~~~~~~~-~~~~~~v~~-i-----------~~fggl~ap~~e~klglgg~---~y~~f 187 (311)
+|+++|.-+|--- ||+||.+.+-.|+ .+|.. ..| + .+|- -|||+||.||..--+ +-.=|
T Consensus 145 ke~~ieikdYd~E---L~slsaaEi~~Y~f~f~Gl-~TGPYYrYq~~~D~fem~fK-s~aPTlEakle~lkyalf~calf 219 (476)
T KOG2706|consen 145 KEDEIEIKDYDTE---LPSLSAAEIFAYFFHFCGL-FTGPYYRYQMLIDSFEMIFK-SWAPTLEAKLEFLKYALFSCALF 219 (476)
T ss_pred ccCCcchhhhhhc---cccchHHHHHHHHHHHhhh-ccCcceehhhhhhhcccchh-ccCchHHHHHHHHHHHHHHhHHH
Confidence 4555565555544 7788888776643 33333 222 1 2222 489999999874221 11111
Q ss_pred -hhhccccccccccCCeee
Q 021554 188 -IQSVHLPMQLSQVDPIVA 205 (311)
Q Consensus 188 -i~~~~lp~qLs~vDpIva 205 (311)
+-+--.|+.+..-|.++.
T Consensus 220 laTN~m~PLD~alSD~ffe 238 (476)
T KOG2706|consen 220 LATNHMFPLDIALSDAFFE 238 (476)
T ss_pred HhhccccchHHhhhhhhhh
Confidence 334446888888886543
No 169
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.07 E-value=1.2e+02 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=18.9
Q ss_pred ceeecccccccee-----ecCCCCcccceEE
Q 021554 230 EQKRCKYCLGTGY-----LACARCSNTGSLV 255 (311)
Q Consensus 230 ~~k~C~~C~GTG~-----~~C~~C~GSG~v~ 255 (311)
....|..|..... ..|+.|++.....
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGERLRV 99 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCCcEE
Confidence 7789999986543 4599998766543
No 170
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.46 E-value=1.7e+02 Score=23.48 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=24.1
Q ss_pred hHHHHHhhh--HHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Q 021554 75 TVQDFAKME--LQEIHDNIRSRRNKIFLHMEEVRRLRIQQR 113 (311)
Q Consensus 75 ~~~d~~~m~--~~ei~~ni~~r~~ki~~~~eevrrlr~q~r 113 (311)
++.|+.+++ |+.=-..|++|+++ ++++++..|+-+.+
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~--~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQ--LLMEQIEELKKKER 85 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 455555554 55556678888888 56777777765433
No 171
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=20.33 E-value=87 Score=21.85 Aligned_cols=7 Identities=57% Similarity=1.445 Sum_probs=3.8
Q ss_pred cCCCCcc
Q 021554 244 ACARCSN 250 (311)
Q Consensus 244 ~C~~C~G 250 (311)
.|++|++
T Consensus 5 ~C~~CG~ 11 (46)
T PRK00398 5 KCARCGR 11 (46)
T ss_pred ECCCCCC
Confidence 4566653
No 172
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=20.11 E-value=97 Score=32.18 Aligned_cols=34 Identities=44% Similarity=0.454 Sum_probs=22.0
Q ss_pred HHHHHhhhHHHHHHH--------HHhh--hhhhhhhHHHHHHHHH
Q 021554 76 VQDFAKMELQEIHDN--------IRSR--RNKIFLHMEEVRRLRI 110 (311)
Q Consensus 76 ~~d~~~m~~~ei~~n--------i~~r--~~ki~~~~eevrrlr~ 110 (311)
-|||||| ++|||.| |.+- -|-|=+|.-||-||--
T Consensus 443 kqd~akm-l~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEk 486 (503)
T KOG2802|consen 443 KQDFAKM-LQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEK 486 (503)
T ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHH
Confidence 4799998 6777764 3222 3456677788887753
Done!