Query 021554
Match_columns 311
No_of_seqs 173 out of 1230
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.4 2.8E-13 9.5E-18 108.5 4.9 90 190-307 3-101 (104)
2 1nlt_A Protein YDJ1, mitochond 99.2 4.8E-12 1.6E-16 115.6 3.0 90 189-301 12-111 (248)
3 1exk_A DNAJ protein; extended 99.1 5.5E-11 1.9E-15 90.0 3.8 65 225-300 5-78 (79)
4 1exk_A DNAJ protein; extended 97.8 1.2E-05 4.1E-10 60.5 3.7 43 242-300 11-64 (79)
5 2ctt_A DNAJ homolog subfamily 97.5 6.7E-05 2.3E-09 59.7 3.9 39 230-287 44-93 (104)
6 3lcz_A YCZA, inhibitor of trap 97.2 0.00013 4.5E-09 52.9 2.5 28 274-301 8-38 (53)
7 1nlt_A Protein YDJ1, mitochond 96.9 0.00027 9.3E-09 64.3 2.2 40 231-287 54-108 (248)
8 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00061 2.1E-08 49.3 3.1 26 275-300 9-37 (53)
9 3lcz_A YCZA, inhibitor of trap 96.1 0.0022 7.6E-08 46.4 2.1 27 230-256 8-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.0 0.0032 1.1E-07 45.5 2.6 26 231-256 9-37 (53)
11 3pmq_A Decaheme cytochrome C M 85.8 0.029 1E-06 58.2 -5.3 69 224-296 184-281 (669)
12 2fiy_A Protein FDHE homolog; F 64.0 2.2 7.6E-05 40.2 1.3 23 288-310 255-277 (309)
13 3pmq_A Decaheme cytochrome C M 58.6 0.94 3.2E-05 47.1 -2.5 42 243-297 192-257 (669)
14 3efg_A Protein SLYX homolog; x 48.5 24 0.00082 27.0 4.6 53 79-133 25-78 (78)
15 2aus_D NOP10, ribosome biogene 44.5 9.4 0.00032 28.3 1.7 33 276-311 6-39 (60)
16 3pih_A Uvrabc system protein A 43.7 11 0.00039 40.2 2.8 22 288-309 275-296 (916)
17 1qo8_A Flavocytochrome C3 fuma 42.4 2.4 8.1E-05 41.5 -2.5 59 233-296 14-86 (566)
18 2apo_B Ribosome biogenesis pro 42.3 13 0.00045 27.4 2.2 33 276-311 7-40 (60)
19 1pft_A TFIIB, PFTFIIBN; N-term 40.5 11 0.00038 25.7 1.4 16 277-292 7-30 (50)
20 1dl6_A Transcription factor II 40.4 20 0.00068 25.7 2.8 23 275-300 11-41 (58)
21 1y0p_A Fumarate reductase flav 34.5 2.7 9.3E-05 41.1 -3.5 63 233-299 13-92 (571)
22 2kz3_A Putative uncharacterize 32.2 22 0.00077 27.4 2.1 31 73-110 25-55 (83)
23 3nyb_B Protein AIR2; polya RNA 29.5 26 0.00089 26.9 2.1 51 230-291 4-64 (83)
24 1btq_A BAND 3 anion transport 28.9 20 0.00069 22.4 1.1 18 153-170 8-25 (26)
25 2ygr_A Uvrabc system protein A 28.1 23 0.0008 38.4 2.1 20 288-307 302-321 (993)
26 2r6f_A Excinuclease ABC subuni 23.0 21 0.00073 38.6 0.6 17 144-160 117-136 (972)
27 1bnx_A Protein (BAND 3); human 22.7 85 0.0029 20.6 3.3 17 154-170 16-32 (34)
28 3ts2_A Protein LIN-28 homolog 22.0 70 0.0024 26.7 3.5 39 243-292 98-138 (148)
29 2hf1_A Tetraacyldisaccharide-1 21.2 39 0.0013 25.1 1.6 8 285-292 25-32 (68)
30 1x4s_A Protein FON, zinc finge 21.1 58 0.002 24.0 2.4 23 271-293 7-33 (59)
31 2r6f_A Excinuclease ABC subuni 21.0 41 0.0014 36.4 2.3 22 276-297 754-787 (972)
32 2jr6_A UPF0434 protein NMA0874 20.4 40 0.0014 25.1 1.5 16 277-292 10-32 (68)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=108.52 Aligned_cols=90 Identities=22% Similarity=0.425 Sum_probs=72.4
Q ss_pred hccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee------ecCCCCcccceEEeeeccccc
Q 021554 190 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 190 ~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c 263 (311)
+.++++.|++.| .|+|..+ ++++++...|+.|+|+|. .+|+.|+|+|++....
T Consensus 3 ~~~~~l~vslee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----- 61 (104)
T 2ctt_A 3 SGSSGMELTFNQ----AAKGVNK------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----- 61 (104)
T ss_dssp CCCCCCCCCCSS----CCSSSCT------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-----
T ss_pred ceEEEEEEEHHH----HcCCCEE------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-----
Confidence 467888999999 8899865 566778899999999994 6899999999986542
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee---eCCCCCCeeEEeceeeCCCC
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASEHDPRI 307 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG~v~a~EhdprI 307 (311)
| .++...+|+.|+|+|++ +|+.|+|.|.+.. +....|
T Consensus 62 -G-----~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~-~k~l~V 101 (104)
T 2ctt_A 62 -G-----PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ-KKRSGP 101 (104)
T ss_dssp -T-----TEEEEEECSSSSSSSEECSSCCSSSSSCSEECC-CCSSCC
T ss_pred -C-----CEEEEEECCcCCCcceECCCcCCCCCCeeEEEE-EEEEEE
Confidence 2 13457899999999998 7999999999864 344444
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.19 E-value=4.8e-12 Score=115.62 Aligned_cols=90 Identities=21% Similarity=0.520 Sum_probs=70.6
Q ss_pred hhccccccccccCCeeeeeecceeceeeeeEEEEeeeEeecceeecccccccee-----ecCCCCcccceEEeeeccccc
Q 021554 189 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV 263 (311)
Q Consensus 189 ~~~~lp~qLs~vDpIvasF~GGavGvisal~vvEinnVk~q~~k~C~~C~GTG~-----~~C~~C~GSG~v~~~~~~s~c 263 (311)
..+.+.+.|++.| .|+|..+ ++++.+...|..|+|+|+ .+|+.|+|+|++....+.
T Consensus 12 ~d~~~~l~vslee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~--- 72 (248)
T 1nlt_A 12 KDIKHEISASLEE----LYKGRTA------------KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQM--- 72 (248)
T ss_dssp CCEEEEEEECTTH----HHHCEEE------------EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEES---
T ss_pred CCEEEEEEecHHH----hcCCceE------------EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEec---
Confidence 3556777788887 7888754 566677889999999995 689999999998765443
Q ss_pred CCCCCCCCCCCceeCCCCCCCcee-----eCCCCCCeeEEece
Q 021554 264 NGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMAS 301 (311)
Q Consensus 264 ~G~~g~~~~q~~~rCp~C~G~GKv-----~CptC~GtG~v~a~ 301 (311)
| ++.++.+.+|+.|+|+|++ +|++|+|.|.+...
T Consensus 73 -g---~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~ 111 (248)
T 1nlt_A 73 -G---PMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENER 111 (248)
T ss_dssp -S---SEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEE
T ss_pred -C---ceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeee
Confidence 2 2334567899999999964 79999999998764
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.08 E-value=5.5e-11 Score=90.05 Aligned_cols=65 Identities=23% Similarity=0.666 Sum_probs=53.3
Q ss_pred eEeecceeecccccccee------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCe
Q 021554 225 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 295 (311)
Q Consensus 225 nVk~q~~k~C~~C~GTG~------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~Gt 295 (311)
++++.+...|+.|+|+|. .+|+.|+|+|.+...+ | .++...+|+.|+|+|++ +|+.|+|.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g-----~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 73 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ------G-----FFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE------T-----TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc------C-----CCEEeeECcCCCCccEECCCcCCCCCCe
Confidence 456678889999999995 5899999999986532 2 12356799999999998 89999999
Q ss_pred eEEec
Q 021554 296 GMAMA 300 (311)
Q Consensus 296 G~v~a 300 (311)
|.+..
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99863
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.82 E-value=1.2e-05 Score=60.48 Aligned_cols=43 Identities=33% Similarity=0.852 Sum_probs=34.7
Q ss_pred eecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee-----------eCCCCCCeeEEec
Q 021554 242 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 300 (311)
Q Consensus 242 ~~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv-----------~CptC~GtG~v~a 300 (311)
...|+.|+|+|... + ....+|+.|+|+|++ .|+.|+|+|.+..
T Consensus 11 ~~~C~~C~G~G~~~---------~-------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 64 (79)
T 1exk_A 11 LEECDVCHGSGAKP---------G-------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK 64 (79)
T ss_dssp EEECGGGTTTSBCS---------S-------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred ceECCCCcccccCC---------C-------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC
Confidence 47899999999742 1 134689999999965 7999999999863
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=6.7e-05 Score=59.67 Aligned_cols=39 Identities=36% Similarity=1.011 Sum_probs=32.0
Q ss_pred ceeecccccccee-----------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 230 EQKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 230 ~~k~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
....|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|++
T Consensus 44 ~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQA 93 (104)
T ss_dssp CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEE
T ss_pred CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEE
Confidence 3568999999995 3799999999873 2469999999986
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.25 E-value=0.00013 Score=52.90 Aligned_cols=28 Identities=39% Similarity=1.000 Sum_probs=23.9
Q ss_pred CceeCCCCCCCcee---eCCCCCCeeEEece
Q 021554 274 KTERCSNCSGSGKV---MCPTCLCTGMAMAS 301 (311)
Q Consensus 274 ~~~rCp~C~G~GKv---~CptC~GtG~v~a~ 301 (311)
...+|+.|+|+|++ +|+.|+|+|.+...
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 35789999999996 89999999988754
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.95 E-value=0.00027 Score=64.34 Aligned_cols=40 Identities=33% Similarity=0.833 Sum_probs=29.9
Q ss_pred eeecccccccee---------------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee
Q 021554 231 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 287 (311)
Q Consensus 231 ~k~C~~C~GTG~---------------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv 287 (311)
...|+.|+|+|. .+|+.|+|+|.+.. ...+|+.|.|.|.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence 368999999884 36888888886631 24579999998865
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.87 E-value=0.00061 Score=49.34 Aligned_cols=26 Identities=27% Similarity=0.876 Sum_probs=18.8
Q ss_pred ceeCCCCCCCcee---eCCCCCCeeEEec
Q 021554 275 TERCSNCSGSGKV---MCPTCLCTGMAMA 300 (311)
Q Consensus 275 ~~rCp~C~G~GKv---~CptC~GtG~v~a 300 (311)
..+|+.|+|+|++ +|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 3567777777765 6888888887764
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.12 E-value=0.0022 Score=46.38 Aligned_cols=27 Identities=26% Similarity=0.747 Sum_probs=20.4
Q ss_pred ceeecccccccee---ecCCCCcccceEEe
Q 021554 230 EQKRCKYCLGTGY---LACARCSNTGSLVL 256 (311)
Q Consensus 230 ~~k~C~~C~GTG~---~~C~~C~GSG~v~~ 256 (311)
-...|+.|+|+|. .+|+.|+|+|.+..
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 3457888888887 57888888887754
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.05 E-value=0.0032 Score=45.54 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=17.3
Q ss_pred eeecccccccee---ecCCCCcccceEEe
Q 021554 231 QKRCKYCLGTGY---LACARCSNTGSLVL 256 (311)
Q Consensus 231 ~k~C~~C~GTG~---~~C~~C~GSG~v~~ 256 (311)
...|+.|+|+|. .+|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 346777777775 46777777776654
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=85.80 E-value=0.029 Score=58.24 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=42.3
Q ss_pred eeEeecceeecccccccee---------ecCCCCcccceEEeee-----ccccc-CCCCCCCCCCCceeCCCCCCCce--
Q 021554 224 NNVKQQEQKRCKYCLGTGY---------LACARCSNTGSLVLIE-----PVSTV-NGGDQPLSAPKTERCSNCSGSGK-- 286 (311)
Q Consensus 224 nnVk~q~~k~C~~C~GTG~---------~~C~~C~GSG~v~~~~-----~~s~c-~G~~g~~~~q~~~rCp~C~G~GK-- 286 (311)
+++++.+...|..|+|+|. .+|..|+|+....... ..... .| + ..+....|..|+..+.
T Consensus 184 k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G--~--fP~~~~~C~~CH~~~~~l 259 (669)
T 3pmq_A 184 YTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLT--G--FPQSISNCQTCHADNPDL 259 (669)
T ss_dssp CCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTS--S--CSSCTTCCTTTSCCCTTC
T ss_pred eEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeecc--C--CCCccCcchhhcCCcccc
Confidence 4566778889999999873 5799999994221000 00000 11 0 1133567999998764
Q ss_pred ------------eeCCCCCCee
Q 021554 287 ------------VMCPTCLCTG 296 (311)
Q Consensus 287 ------------v~CptC~GtG 296 (311)
..|..||...
T Consensus 260 a~~~~w~~~ps~~aC~sCH~~~ 281 (669)
T 3pmq_A 260 ADRQNWYRVPTMEACGACHTQI 281 (669)
T ss_dssp CSCSCTTTCCCHHHHHHHCCSC
T ss_pred ccccccccCCchhhhhhccCCc
Confidence 1599998644
No 12
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=64.02 E-value=2.2 Score=40.24 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.7
Q ss_pred eCCCCCCeeEEeceeeCCCCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRIDPF 310 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprIdpf 310 (311)
.|.+|++.=++.-.+.|+.+||+
T Consensus 255 ~C~~C~~YlK~~~~~~d~~~dp~ 277 (309)
T 2fiy_A 255 TCPSCQGYLKQFYLEFDRHADAL 277 (309)
T ss_dssp EETTTTEEEEEEETTTCTTCCHH
T ss_pred EcccccchHhhhhhccCCCCCcc
Confidence 79999888888888889999885
No 13
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=58.58 E-value=0.94 Score=47.10 Aligned_cols=42 Identities=26% Similarity=0.599 Sum_probs=30.0
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCc------------------------eeeCCCCCCeeE
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG------------------------KVMCPTCLCTGM 297 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~G------------------------Kv~CptC~GtG~ 297 (311)
..|..|+|+|.. .|+ .....++|+.|+|+. ...|.+||..+.
T Consensus 192 ~~C~tCHGsGA~---------~Gt----~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 192 DTCNSCHSNLAF---------HGG----RYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp HHHHHHHSSCCT---------TTT----TSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CcCCCCCCCCCc---------CCc----cCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 689999999963 121 112467899999982 126999998765
No 14
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.52 E-value=24 Score=26.95 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhhhc-CCCccccCCCCCCC
Q 021554 79 FAKMELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL-GISKEEQDNELPSF 133 (311)
Q Consensus 79 ~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~q~r~k~~~~-g~~~~~~~~~~~~~ 133 (311)
|..-.++|+.+-|..-...|=.|-+++|.|+ +|++..+. +..+..+++++|+|
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~~~~~~~~~~e~~PPHY 78 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVRSTLFADAADEPPPPHY 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCCCCCCCCCccCC
Confidence 4444488888888888888888888888886 45555543 23334444567776
No 15
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.53 E-value=9.4 Score=28.27 Aligned_cols=33 Identities=33% Similarity=0.734 Sum_probs=22.2
Q ss_pred eeCCCCCCCc-eeeCCCCCCeeEEeceeeCCCCCCCC
Q 021554 276 ERCSNCSGSG-KVMCPTCLCTGMAMASEHDPRIDPFD 311 (311)
Q Consensus 276 ~rCp~C~G~G-Kv~CptC~GtG~v~a~EhdprIdpf~ 311 (311)
.+|+.|+-.. +..||.|.+ ...+.|=+|+.|=|
T Consensus 6 r~C~~Cg~YTLk~~CP~CG~---~t~~ahParfSP~D 39 (60)
T 2aus_D 6 RKCPKCGRYTLKETCPVCGE---KTKVAHPPRFSPED 39 (60)
T ss_dssp EECTTTCCEESSSBCTTTCS---BCEESSCCCCCSCC
T ss_pred eECCCCCCEEccccCcCCCC---ccCCCCCCCCCCCC
Confidence 5688884332 226888844 45677888888854
No 16
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=43.74 E-value=11 Score=40.20 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=13.2
Q ss_pred eCCCCCCeeEEeceeeCCCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRIDP 309 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprIdp 309 (311)
+||+|+|.|.+..-..|.-|||
T Consensus 275 ~C~~C~G~G~~~~~d~~~~~d~ 296 (916)
T 3pih_A 275 ACPNCHGLGFTFEVDPSLVIDE 296 (916)
T ss_dssp BCTTTTTSSEEEEECSCCC---
T ss_pred cCCeeecccceEecCHHHccCC
Confidence 6788888887776555554444
No 17
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=42.35 E-value=2.4 Score=41.54 Aligned_cols=59 Identities=15% Similarity=0.353 Sum_probs=35.3
Q ss_pred ecccccccee----------ecCCCCcccceEEee-ecccccCCCCCCCCCCCceeCCCCCCCcee---eCCCCCCee
Q 021554 233 RCKYCLGTGY----------LACARCSNTGSLVLI-EPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTG 296 (311)
Q Consensus 233 ~C~~C~GTG~----------~~C~~C~GSG~v~~~-~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv---~CptC~GtG 296 (311)
.|..|||.+. ..|..||+....... .....+.. .......|..|+..... .|..||...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~-----~~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHN-----SHLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTS-----STTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcch-----hcCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 7999998864 269999986322110 00001111 01135689999975443 799999765
No 18
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=42.31 E-value=13 Score=27.43 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=23.0
Q ss_pred eeCCCCCCCc-eeeCCCCCCeeEEeceeeCCCCCCCC
Q 021554 276 ERCSNCSGSG-KVMCPTCLCTGMAMASEHDPRIDPFD 311 (311)
Q Consensus 276 ~rCp~C~G~G-Kv~CptC~GtG~v~a~EhdprIdpf~ 311 (311)
..|+.|+-.. +..||.|. ....+-|-+|+.|=|
T Consensus 7 r~C~~CgvYTLk~~CP~CG---~~T~~~hParfSp~D 40 (60)
T 2apo_B 7 KKCPKCGLYTLKEICPKCG---EKTVIPKPPKFSLED 40 (60)
T ss_dssp EECTTTCCEESSSBCSSSC---SBCBCCCCCCCCTTC
T ss_pred eeCCCCCCEeccccCcCCC---CcCCCCCCCCCCCCc
Confidence 5789995432 33799994 446678888988854
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=40.51 E-value=11 Score=25.70 Aligned_cols=16 Identities=31% Similarity=1.194 Sum_probs=10.1
Q ss_pred eCCCCCC--------CceeeCCCC
Q 021554 277 RCSNCSG--------SGKVMCPTC 292 (311)
Q Consensus 277 rCp~C~G--------~GKv~CptC 292 (311)
.||.|+| +|...|+.|
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSS
T ss_pred eCcCCCCcceEEcCCCCeEECccc
Confidence 4666655 255578877
No 20
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=40.40 E-value=20 Score=25.71 Aligned_cols=23 Identities=30% Similarity=0.970 Sum_probs=15.7
Q ss_pred ceeCCCCCC--------CceeeCCCCCCeeEEec
Q 021554 275 TERCSNCSG--------SGKVMCPTCLCTGMAMA 300 (311)
Q Consensus 275 ~~rCp~C~G--------~GKv~CptC~GtG~v~a 300 (311)
...||.|++ +|.+.|..| |.+..
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 446888876 255689988 66664
No 21
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=34.46 E-value=2.7 Score=41.10 Aligned_cols=63 Identities=21% Similarity=0.454 Sum_probs=36.1
Q ss_pred ecccccccee-----------ecCCCCcccceEEeeec---ccccCCCCCCCCCCCceeCCCCCCCce---eeCCCCCCe
Q 021554 233 RCKYCLGTGY-----------LACARCSNTGSLVLIEP---VSTVNGGDQPLSAPKTERCSNCSGSGK---VMCPTCLCT 295 (311)
Q Consensus 233 ~C~~C~GTG~-----------~~C~~C~GSG~v~~~~~---~s~c~G~~g~~~~q~~~rCp~C~G~GK---v~CptC~Gt 295 (311)
.|..||+... ..|..||.......... ...... ........|..|+..-. ..|..||..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~----~H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHA----SHFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTS----CSCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccc----cccCCCCCccccCccccCCCccccccChh
Confidence 8999998643 46999998643211000 000000 01112467999997643 379999986
Q ss_pred eEEe
Q 021554 296 GMAM 299 (311)
Q Consensus 296 G~v~ 299 (311)
.+..
T Consensus 89 ~~~~ 92 (571)
T 1y0p_A 89 DFNM 92 (571)
T ss_dssp CCCC
T ss_pred hccC
Confidence 4443
No 22
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=32.25 E-value=22 Score=27.38 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=24.1
Q ss_pred chhHHHHHhhhHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 021554 73 PETVQDFAKMELQEIHDNIRSRRNKIFLHMEEVRRLRI 110 (311)
Q Consensus 73 ~~~~~d~~~m~~~ei~~ni~~r~~ki~~~~eevrrlr~ 110 (311)
=.||+||...+.+|+++ +--|-+++|+.+|-
T Consensus 25 I~Tv~Dfl~~d~~eL~~-------~~~ls~~~v~~l~r 55 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQ-------KCGLSYKALVALRR 55 (83)
T ss_dssp CCCHHHHTTSCHHHHHH-------HHTCCHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHH-------HhCCCHHHHHHHHH
Confidence 35999999999999998 33455778877764
No 23
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=29.50 E-value=26 Score=26.93 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=26.3
Q ss_pred ceeecccccccee--------ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCC
Q 021554 230 EQKRCKYCLGTGY--------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPT 291 (311)
Q Consensus 230 ~~k~C~~C~GTG~--------~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~Cpt 291 (311)
+...|..|..+|- .+|-.|...|.+...-.. ......|-+|+..|.. .|+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~-----------p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL-----------PFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccC-----------CCCCCeecccCCCCcCcccCCc
Confidence 3457999988774 246667777665321000 0134679999999987 6775
No 24
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=28.86 E-value=20 Score=22.43 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhcccccc
Q 021554 153 ATCFSLIAGVILFGGLLA 170 (311)
Q Consensus 153 ~~~~~~v~~i~~fggl~a 170 (311)
-.|++.++-.|.||||+.
T Consensus 8 FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 8 FIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHcchhccccccC
Confidence 356666777899999863
No 25
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=28.12 E-value=23 Score=38.38 Aligned_cols=20 Identities=20% Similarity=0.562 Sum_probs=13.2
Q ss_pred eCCCCCCeeEEeceeeCCCC
Q 021554 288 MCPTCLCTGMAMASEHDPRI 307 (311)
Q Consensus 288 ~CptC~GtG~v~a~EhdprI 307 (311)
+||+|.|.|.+..-..|.-|
T Consensus 302 aCp~C~G~G~~~~~d~~~~i 321 (993)
T 2ygr_A 302 ACPDCSGLGIRKEVDPELVV 321 (993)
T ss_dssp BCTTTTTSCEEEEECTTSCC
T ss_pred CCCCCcCccceeecCHHHcC
Confidence 68888888877755544333
No 26
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=22.98 E-value=21 Score=38.63 Aligned_cols=17 Identities=18% Similarity=0.299 Sum_probs=11.3
Q ss_pred chhh---HHHHHHHHHHHHH
Q 021554 144 SAAN---LKVYYATCFSLIA 160 (311)
Q Consensus 144 ~~~~---~~~~~~~~~~~v~ 160 (311)
|-.| |.+|....|+.++
T Consensus 117 TvgT~Tei~d~lrllfar~g 136 (972)
T 2r6f_A 117 TVGTVTEIYDYLRLLFARIG 136 (972)
T ss_dssp BHHHHTSHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHhccC
Confidence 5566 7777777777553
No 27
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.70 E-value=85 Score=20.63 Aligned_cols=17 Identities=41% Similarity=0.776 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcccccc
Q 021554 154 TCFSLIAGVILFGGLLA 170 (311)
Q Consensus 154 ~~~~~v~~i~~fggl~a 170 (311)
++|+.++-.|.|||++.
T Consensus 16 iyFa~l~PaIaFg~ll~ 32 (34)
T 1bnx_A 16 IYFAALSPAITFGGLLG 32 (34)
T ss_dssp HHHHHHHHHHHSSCSSC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44555777899999853
No 28
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.96 E-value=70 Score=26.67 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=25.7
Q ss_pred ecCCCCcccceEEeeecccccCCCCCCCCCCCceeCCCCCCCcee--eCCCC
Q 021554 243 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTC 292 (311)
Q Consensus 243 ~~C~~C~GSG~v~~~~~~s~c~G~~g~~~~q~~~rCp~C~G~GKv--~CptC 292 (311)
..|-+|...|.+.. .|... .....|..|+..|.+ -||.-
T Consensus 98 ~~C~~Cg~~GH~a~-----~C~~~------~~~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 98 DRCYNCGGLDHHAK-----ECKLP------PQPKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCTTTCCSSCCGG-----GCCSC------CCCCCCTTTCCSSCCGGGCTTT
T ss_pred CcccEeCCccchhh-----hCCCC------CCCCcccccCCcCCEeccCcCC
Confidence 57999988887632 12210 124579999998887 58764
No 29
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.22 E-value=39 Score=25.15 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=4.8
Q ss_pred ceeeCCCC
Q 021554 285 GKVMCPTC 292 (311)
Q Consensus 285 GKv~CptC 292 (311)
|...|+.|
T Consensus 25 ~~LiC~~c 32 (68)
T 2hf1_A 25 DELICKGD 32 (68)
T ss_dssp TEEEETTT
T ss_pred CEEEcCCC
Confidence 44566666
No 30
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=21.11 E-value=58 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.696 Sum_probs=16.8
Q ss_pred CCCCceeCCCCCC----CceeeCCCCC
Q 021554 271 SAPKTERCSNCSG----SGKVMCPTCL 293 (311)
Q Consensus 271 ~~q~~~rCp~C~G----~GKv~CptC~ 293 (311)
.+.....|..|.- ..+=+||.|.
T Consensus 7 ~m~~~~~C~vC~~~~~~~akY~CPrC~ 33 (59)
T 1x4s_A 7 GMEPAGPCGFCPAGEVQPARYTCPRCN 33 (59)
T ss_dssp SCCCCEEECSSCTTCCEEECEECTTTC
T ss_pred CCCCCCcCcCCCCCcCCCccccCcCCC
Confidence 4455678999984 3566899995
No 31
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=20.97 E-value=41 Score=36.44 Aligned_cols=22 Identities=32% Similarity=0.854 Sum_probs=18.3
Q ss_pred eeCCCCCCCcee------------eCCCCCCeeE
Q 021554 276 ERCSNCSGSGKV------------MCPTCLCTGM 297 (311)
Q Consensus 276 ~rCp~C~G~GKv------------~CptC~GtG~ 297 (311)
-+|+.|.|.|.+ .|..|+|..+
T Consensus 754 grC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 787 (972)
T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCB
T ss_pred ccccccccccceeeehhccccccccccccccccc
Confidence 479999999986 6999999754
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.41 E-value=40 Score=25.08 Aligned_cols=16 Identities=13% Similarity=0.302 Sum_probs=9.3
Q ss_pred eCCCCCCC-------ceeeCCCC
Q 021554 277 RCSNCSGS-------GKVMCPTC 292 (311)
Q Consensus 277 rCp~C~G~-------GKv~CptC 292 (311)
.||.|.|. |...|+.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQA 32 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTT
T ss_pred ECCCCCCcCeEeCCCCEEEcCCC
Confidence 45555553 45567777
Done!