Query 021557
Match_columns 311
No_of_seqs 128 out of 176
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02842 nucleotide kinase 100.0 1.9E-92 4.1E-97 708.3 27.0 294 16-309 212-505 (505)
2 PF09353 DUF1995: Domain of un 100.0 2.6E-50 5.6E-55 364.4 23.6 197 47-286 8-208 (209)
3 cd07947 DRE_TIM_Re_CS Clostrid 44.6 93 0.002 29.7 7.5 62 45-115 111-175 (279)
4 PF09345 DUF1987: Domain of un 40.0 1.4E+02 0.0029 24.4 6.7 55 47-109 26-83 (99)
5 PF09822 ABC_transp_aux: ABC-t 39.3 2.1E+02 0.0047 26.4 9.0 49 155-204 192-240 (271)
6 PF15470 DUF4637: Domain of un 38.1 12 0.00026 32.9 0.3 24 278-309 75-98 (173)
7 PF10087 DUF2325: Uncharacteri 34.5 61 0.0013 25.5 3.9 32 165-197 51-82 (97)
8 PF14258 DUF4350: Domain of un 33.3 85 0.0018 22.9 4.3 37 158-195 32-69 (70)
9 PRK01889 GTPase RsgA; Reviewed 32.4 67 0.0015 31.6 4.6 42 158-199 111-152 (356)
10 PF13200 DUF4015: Putative gly 30.6 3.3E+02 0.0072 26.7 8.9 78 26-107 105-192 (316)
11 PF07302 AroM: AroM protein; 26.9 5.2E+02 0.011 24.1 9.8 148 25-197 50-209 (221)
12 KOG1838 Alpha/beta hydrolase [ 26.5 2E+02 0.0044 29.3 6.8 41 158-199 121-163 (409)
13 PRK04081 hypothetical protein; 26.4 74 0.0016 29.4 3.4 21 281-301 87-107 (207)
14 PF10872 DUF2740: Protein of u 26.1 32 0.0007 23.9 0.8 12 216-227 16-27 (48)
15 COG1030 NfeD Membrane-bound se 25.6 2.6E+02 0.0057 28.8 7.4 65 41-117 35-99 (436)
16 KOG0448 Mitofusin 1 GTPase, in 23.7 1E+02 0.0022 33.6 4.2 43 158-204 230-275 (749)
17 PF04413 Glycos_transf_N: 3-De 23.5 1.3E+02 0.0029 26.7 4.5 60 162-231 97-156 (186)
18 cd07939 DRE_TIM_NifV Streptomy 22.1 4.9E+02 0.011 24.0 8.2 58 46-115 107-164 (259)
19 KOG1200 Mitochondrial/plastidi 21.9 2.9E+02 0.0063 26.0 6.3 26 89-114 25-50 (256)
20 TIGR00853 pts-lac PTS system, 21.9 76 0.0017 25.3 2.3 32 164-199 53-84 (95)
21 TIGR02660 nifV_homocitr homoci 21.8 4.2E+02 0.0091 26.0 8.0 59 45-115 109-167 (365)
22 COG0079 HisC Histidinol-phosph 21.7 7.7E+02 0.017 24.2 11.2 151 26-199 23-185 (356)
23 PTZ00397 macrophage migration 21.4 4.2E+02 0.009 21.3 6.7 77 35-111 8-102 (116)
No 1
>PLN02842 nucleotide kinase
Probab=100.00 E-value=1.9e-92 Score=708.27 Aligned_cols=294 Identities=85% Similarity=1.368 Sum_probs=285.8
Q ss_pred cCcccccCCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHH
Q 021557 16 RSNQVSSSQDNWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIA 95 (311)
Q Consensus 16 ~~~~~~~~~~~~~~~p~~ln~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~ 95 (311)
++++.++++|+|+||||+||||||+||+|+|||+||++||++|++||++|++||++||||+++||+|||||+|+|||+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~ 291 (505)
T PLN02842 212 KTKKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVLA 291 (505)
T ss_pred ccccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcceEEEEEecCccccccccccchhHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCeeEEEecCCcchhhhcCCCccchhhhhhhhhcccCCCCCccceeeeccCCCCCCCCCCCEEEEEeccCCCcc
Q 021557 96 LSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVEIGSIGANEVDEQDDMFILVAPQNAVGN 175 (311)
Q Consensus 96 ~~l~~~g~rvrI~fPD~~g~aala~~~~~l~g~~~~~~~~dw~~~~~~~~f~~~~~i~~~~v~~~d~~~Ivv~P~~~v~~ 175 (311)
.+|+++|+|||||||||||+|||+|+|++|+|+++++++|||++++++++|++++++|+++++++|++||+|+||+.||+
T Consensus 292 ~~~~~~~~~~kv~~~~~~g~~~~~~~~~~~~~~~~~~~~~dw~~~~~~~~~~~~~~~~~~~~~~~d~~~i~v~P~~~v~~ 371 (505)
T PLN02842 292 LSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVKIGAIGAKEVDEEDDMFILVAPQNAVGN 371 (505)
T ss_pred HHHhhcCCceEEEecCCcchhHhccCccccccchhhhhhcccccccccccceeecccccCCCCCCCcEEEEEcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCCcEEEEcCCCCCCCCCcCcccchhhHhHHHhhhcCcEeEEEEEecccCcccceeeEEEeecCCCc
Q 021557 176 CIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTYPNGY 255 (311)
Q Consensus 176 ~el~~ve~l~~~a~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~Fl~sfe~vYylr~l~~~g~~~p~~GaLfR~YPgpW 255 (311)
|++++||+||+++++|||||+||+|+|+.|++|||++++|++|++|+++|++|||||||+++||+||+.|||+|+||++|
T Consensus 372 ~~~~~~e~~~~~~~~rpvillnp~LeD~~~~vGig~~~~R~~R~~f~~t~~~~Y~~~~l~~~~~~~~~~gal~~~yp~~w 451 (505)
T PLN02842 372 CIIDDLQAMTTAAGKRPVILVNPRLKDLPGSSGIMQTMGREQRLEYAASFENCYSFRLLYYAGTQYPIMGALRMSYPYRY 451 (505)
T ss_pred cchHHHHHHHHHhCCCeEEEECCcccccccccchhHHHHHHHHHHHHHHhhheeEEEeccccccccccceeeeecCCCCe
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCceEEeeecCCCCCHHHHHHHHcCCCCcccccCcchhhcccc
Q 021557 256 ELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFLGKPRNREKKASGFWGFLSS 309 (311)
Q Consensus 256 qV~~~~~~~~~~g~y~~v~~~~~rPs~eel~~~l~~~~~~~~~~~~~~~~~~~~ 309 (311)
|||+++++..++++|+++++|++||++|||+.+|.+++.++++|+|||||||++
T Consensus 452 ~l~~~~~~~~~~~~y~~~~~~~~~P~~e~i~~~~~~~~~~~~~~~~~~~~~~~~ 505 (505)
T PLN02842 452 ELYKRVDEENGKEKYIILATFSERPTPDEINDAFSGRSRDQAKKASGIWGFLSI 505 (505)
T ss_pred eEEEecCccccCcceEEeeecCCCCCHHHHHHHhCCCccchhhccccchhcccC
Confidence 999987754457899999999999999999999999999999999999999985
No 2
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=2.6e-50 Score=364.38 Aligned_cols=197 Identities=36% Similarity=0.646 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCCCeeEEEecCCcchhhhcCCCccch
Q 021557 47 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGMPLQLA 126 (311)
Q Consensus 47 ~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g~rvrI~fPD~~g~aala~~~~~l~ 126 (311)
.++||++|+++||++|.+|++||++||+|++ ++++++++|++.|++.|++++++||| +|++++
T Consensus 8 a~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------~~~~la~~~~~~l~~~~~~~~~~~pd-~g~~al-------- 70 (209)
T PF09353_consen 8 AVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------SNMPLAREFARKLAASGRRVRVVFPD-AGEAAL-------- 70 (209)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------hHHHHHHHHHHHHHhcCceEEEEcCC-hHHHHH--------
Confidence 7899999999999999999999999999943 37999999999999999999999998 999999
Q ss_pred hhhhhhhhcccCCCCCccceeeeccCCCC-CCCC---CCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCCCC
Q 021557 127 GTRKILEFMDWGDYGAKGTFVEIGSIGAN-EVDE---QDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKD 202 (311)
Q Consensus 127 g~~~~~~~~dw~~~~~~~~f~~~~~i~~~-~v~~---~d~~~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~Led 202 (311)
+.++|++..++ +.++++. .... .|+++|+|+|++. +++++|+||+.+++||+|||||+|++
T Consensus 71 ------A~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~vvv~p~~~----~l~~~e~~~~~~~~rpvvl~Np~l~~ 135 (209)
T PF09353_consen 71 ------ARRDWGDGSFK-----IASLDDWSSSEDESKFDDILVVVAPSPQ----ELDDVEKLCEAAGGRPVVLLNPQLED 135 (209)
T ss_pred ------HhccccCCCeE-----EeeccCccccccccccCCEEEEEECChh----hHHHHHHHHHhcCCCeEEEEeccccc
Confidence 55555444322 3333331 1111 1799999999999 99999999999989999999999999
Q ss_pred CCCCcCcccchhhHhHHHhhhcCcEeEEEEEecccCcccceeeEEEeecCCCceEEEEeccCCCCCceEEeeecCCCCCH
Q 021557 203 LPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTYPNGYELYKRVDVPSGGEKYVILSTFTEKPSS 282 (311)
Q Consensus 203 ~~s~~Gig~~~~R~~r~~Fl~sfe~vYylr~l~~~g~~~p~~GaLfR~YPgpWqV~~~~~~~~~~g~y~~v~~~~~rPs~ 282 (311)
.++ +|+| +++|++|++|+++||+||||||++++| .|+||||||||||||++++ +|+|+||+++++|||+
T Consensus 136 ~~~-~g~g-~~~r~~~~~Fl~~fe~vY~l~~l~~~~-----~gal~r~yP~~Wqv~~~~~----~~~y~~v~~~~~rP~~ 204 (209)
T PF09353_consen 136 VRS-VGFG-FPGRKLRERFLSSFETVYYLRPLRISG-----NGALFRCYPGPWQVFREDD----DGEYECVAEFEERPTY 204 (209)
T ss_pred CCc-cccc-cccHHHHHHHHhhceEEEEEEeeccCC-----cEEEEEeCCCCcEEEEEcC----CCcEEEEEecccCCCh
Confidence 994 5688 889999999999999999999998875 4999999999999999885 5899999999999999
Q ss_pred HHHH
Q 021557 283 DDIN 286 (311)
Q Consensus 283 eel~ 286 (311)
+||+
T Consensus 205 ~e~~ 208 (209)
T PF09353_consen 205 EELE 208 (209)
T ss_pred HHhh
Confidence 9997
No 3
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.63 E-value=93 Score=29.70 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhh---hhhHHHHHHHHHHHhhCCCeeEEEecCCcch
Q 021557 45 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRI---GTLMELVRVIALSFADDGKRVKVCVQGSMGE 115 (311)
Q Consensus 45 ~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~---~~~~~lar~~~~~l~~~g~rvrI~fPD~~g~ 115 (311)
++..+.+.+++..|-+.|.. |++-+.. ..+. +..++++.+++....+.|-.++|.++|..|.
T Consensus 111 ~e~l~~~~~~v~~a~~~g~~---v~~~~ed------~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~ 175 (279)
T cd07947 111 EEAMEKYLEIVEEALDHGIK---PRCHLED------ITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGY 175 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCe---EEEEEEc------ccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCc
Confidence 34677888888888888853 3444422 2222 3456788888888777887778999996663
No 4
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=40.04 E-value=1.4e+02 Score=24.37 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHH---hhCCCeeEEEe
Q 021557 47 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSF---ADDGKRVKVCV 109 (311)
Q Consensus 47 ~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l---~~~g~rvrI~f 109 (311)
||+-..+.+.+.+++....+++++.+-=+|.. +-.....|.+.| ++.|..|.|-|
T Consensus 26 Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTS--------Ssk~l~~i~~~Le~~~~~g~~V~v~W 83 (99)
T PF09345_consen 26 FYQPILDWLEAYLAEPNKPITFNFKLSYFNTS--------SSKALMDIFDLLEDAAQKGGKVTVNW 83 (99)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEEEEEecH--------hHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999977777777777777653 334444555555 57788887754
No 5
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=39.25 E-value=2.1e+02 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=36.9
Q ss_pred CCCCCCCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCCCCCC
Q 021557 155 NEVDEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLP 204 (311)
Q Consensus 155 ~~v~~~d~~~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~Led~~ 204 (311)
..+.++.+++|++.|.......|+..+.+..+ .|++-+++++|.-.+..
T Consensus 192 ~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~-~GG~ll~~~d~~~~~~~ 240 (271)
T PF09822_consen 192 EEIPDDADVLVIAGPKTDLSEEELYALDQYLM-NGGKLLILLDPFSVELQ 240 (271)
T ss_pred cccCCCCCEEEEECCCCCCCHHHHHHHHHHHH-cCCeEEEEECCcccccc
Confidence 45668889999999999665556666666655 46899999999854433
No 6
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=38.15 E-value=12 Score=32.95 Aligned_cols=24 Identities=33% Similarity=0.655 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHcCCCCcccccCcchhhcccc
Q 021557 278 EKPSSDDINDAFLGKPRNREKKASGFWGFLSS 309 (311)
Q Consensus 278 ~rPs~eel~~~l~~~~~~~~~~~~~~~~~~~~ 309 (311)
+..+..+|..+=. ..||||||||-
T Consensus 75 QEsStqqValLRR--------adsgFWgwlsP 98 (173)
T PF15470_consen 75 QESSTQQVALLRR--------ADSGFWGWLSP 98 (173)
T ss_pred ccchhhHHHHhhc--------ccCCchhhhcH
Confidence 3445566654422 13789999974
No 7
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.53 E-value=61 Score=25.49 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.8
Q ss_pred EEEeccCCCccccHHHHHHHHHHcCCCcEEEEc
Q 021557 165 ILVAPQNAVGNCIIDDMKAMTDAAGTRPVILIN 197 (311)
Q Consensus 165 Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllN 197 (311)
+||.++..|+...+..+++.|+.. +.|+++.|
T Consensus 51 ~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~ 82 (97)
T PF10087_consen 51 LVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSR 82 (97)
T ss_pred EEEEEeCCcChHHHHHHHHHHHHc-CCcEEEEC
Confidence 455667777777899999999988 99999998
No 8
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=33.27 E-value=85 Score=22.93 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCCCCEEEEEeccCCCcc-ccHHHHHHHHHHcCCCcEEE
Q 021557 158 DEQDDMFILVAPQNAVGN-CIIDDMKAMTDAAGTRPVIL 195 (311)
Q Consensus 158 ~~~d~~~Ivv~P~~~v~~-~el~~ve~l~~~a~~rPvVl 195 (311)
...+..+|+++|...... .+++.+.+.++ .|++-||+
T Consensus 32 ~~~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lvl~ 69 (70)
T PF14258_consen 32 EADDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLVLA 69 (70)
T ss_pred CCCCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEEEe
Confidence 457789999999966442 34555555555 44665553
No 9
>PRK01889 GTPase RsgA; Reviewed
Probab=32.44 E-value=67 Score=31.57 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=29.3
Q ss_pred CCCCCEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 158 DEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 158 ~~~d~~~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
..-|.++||+++.+..+...++.+-.+++..+-.|+|+||=.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~ 152 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKA 152 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEECh
Confidence 455778888888766544445555555677777899999854
No 10
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=30.55 E-value=3.3e+02 Score=26.70 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEE-EEcCCCCC-Cchhh--------hhhhhHHHHHHHH
Q 021557 26 NWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVE-INIPELNP-EMDVY--------RIGTLMELVRVIA 95 (311)
Q Consensus 26 ~~~~~p~~ln~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VE-l~fP~L~~-~~D~~--------~~~~~~~lar~~~ 95 (311)
-|++-...-+-=|+++|+++|.++=|.+|++ -|..-++.+ |+||+-.. +.-.| |..++..++....
T Consensus 105 ~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~----~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~ 180 (316)
T PF13200_consen 105 VWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK----LGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAR 180 (316)
T ss_pred cccCCCCCccCCCCCHHHHHHHHHHHHHHHH----cCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHH
Confidence 3555444556669999999999998888664 388766666 88999211 10011 4555666666666
Q ss_pred HHHhhCCCeeEE
Q 021557 96 LSFADDGKRVKV 107 (311)
Q Consensus 96 ~~l~~~g~rvrI 107 (311)
..|...|..+-+
T Consensus 181 ~~l~~~~v~vSa 192 (316)
T PF13200_consen 181 EELHPYGVPVSA 192 (316)
T ss_pred HHHhHcCCCEEE
Confidence 677767766544
No 11
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.94 E-value=5.2e+02 Score=24.09 Aligned_cols=148 Identities=15% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEE--EEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCC
Q 021557 25 DNWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKV--EINIPELNPEMDVYRIGTLMELVRVIALSFADDG 102 (311)
Q Consensus 25 ~~~~~~p~~ln~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~V--El~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g 102 (311)
++-..+-|+|++==.=+--+++.....++++...=++|...+.+ .=+||.|....-.. .-..+...+..++.. +
T Consensus 50 ~ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~ll---eP~ril~~lV~al~~-~ 125 (221)
T PF07302_consen 50 PGEYVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLL---EPDRILPPLVAALVG-G 125 (221)
T ss_pred CCCceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCccee---ehHHhHHHHHHHhcC-C
Confidence 34466677777411111122323344444444444577744322 33588886531110 023456666666654 4
Q ss_pred CeeEEEecCCcchhhhcCCCccchhhhhhhhhcccCCCCCccceeeeccC-CC--------CC-CCCCCCEEEEEeccCC
Q 021557 103 KRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFVEIGSI-GA--------NE-VDEQDDMFILVAPQNA 172 (311)
Q Consensus 103 ~rvrI~fPD~~g~aala~~~~~l~g~~~~~~~~dw~~~~~~~~f~~~~~i-~~--------~~-v~~~d~~~Ivv~P~~~ 172 (311)
.++-|++|. ..+.+. ....|...+....+....-. ++ .. ...+.|+.++=|=...
T Consensus 126 ~~vGVivP~-~eQ~~~--------------~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt 190 (221)
T PF07302_consen 126 HQVGVIVPL-PEQIAQ--------------QAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYT 190 (221)
T ss_pred CeEEEEecC-HHHHHH--------------HHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 799999998 777665 55677775433333322211 11 01 1234455555444444
Q ss_pred CccccHHHHHHHHHHcCCCcEEEEc
Q 021557 173 VGNCIIDDMKAMTDAAGTRPVILIN 197 (311)
Q Consensus 173 v~~~el~~ve~l~~~a~~rPvVllN 197 (311)
..-+++...+.++|||+=|
T Consensus 191 ------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 191 ------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred ------HHHHHHHHHHhCCCEEeHH
Confidence 4445555555677877754
No 12
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=26.47 E-value=2e+02 Score=29.32 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCCCCEEEEEeccCCCccccHHHHHHHHHHc--CCCcEEEEcCC
Q 021557 158 DEQDDMFILVAPQNAVGNCIIDDMKAMTDAA--GTRPVILINPR 199 (311)
Q Consensus 158 ~~~d~~~Ivv~P~~~v~~~el~~ve~l~~~a--~~rPvVllNp~ 199 (311)
+++++-.|++.|.-..|..+ ..|+-|+..+ .+==+|+||+|
T Consensus 121 ~~~~~P~vvilpGltg~S~~-~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTGGSHE-SYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CCCCCcEEEEecCCCCCChh-HHHHHHHHHHHhCCcEEEEECCC
Confidence 35677889999988855444 8999998866 23457778877
No 13
>PRK04081 hypothetical protein; Provisional
Probab=26.38 E-value=74 Score=29.37 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.7
Q ss_pred CHHHHHHHHcCCCCcccccCc
Q 021557 281 SSDDINDAFLGKPRNREKKAS 301 (311)
Q Consensus 281 s~eel~~~l~~~~~~~~~~~~ 301 (311)
+.||++.++.++..+..+++|
T Consensus 87 S~eE~dkLi~eE~~KId~gTS 107 (207)
T PRK04081 87 SQEEIDKLIKEEEAKIDNGTS 107 (207)
T ss_pred CHHHHHHHHHHHHHhhccCCC
Confidence 379999999888887766665
No 14
>PF10872 DUF2740: Protein of unknown function (DUF2740); InterPro: IPR022626 This entry is represented by Bacteriophage P22, Orf48. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function has a highly conserved sequence. They are found in Enterobacteria and Enterobacteria phages.
Probab=26.13 E-value=32 Score=23.95 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=9.9
Q ss_pred HhHHHhhhcCcE
Q 021557 216 DKRLEYAASFEN 227 (311)
Q Consensus 216 ~~r~~Fl~sfe~ 227 (311)
-+|.+|+++|..
T Consensus 16 ilrdrflssfkq 27 (48)
T PF10872_consen 16 ILRDRFLSSFKQ 27 (48)
T ss_pred HHHHHHHHHhcC
Confidence 478999999974
No 15
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=25.63 E-value=2.6e+02 Score=28.77 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCCCeeEEEecCCcchhh
Q 021557 41 REIRNYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGA 117 (311)
Q Consensus 41 ~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g~rvrI~fPD~~g~aa 117 (311)
-++-.+.+++.+++.+.|-+++...+.+++.-|+-- .+-++++.+.+.+..-.|-+++.+ .|+.|
T Consensus 35 g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGGl-----------~~sm~~iv~~i~~s~vPV~~yv~p-~ga~A 99 (436)
T COG1030 35 GAIDPASADYLQRALQSAEEENAAAVVLELDTPGGL-----------LDSMRQIVRAILNSPVPVIGYVVP-DGARA 99 (436)
T ss_pred CccCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCch-----------HHHHHHHHHHHHcCCCCEEEEEcC-CCcch
Confidence 355667889999999999999999999999999964 455677777776666667666665 45433
No 16
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=1e+02 Score=33.60 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCCCEEEEEeccCCCccccHHHHH--HHHHHcCCCc-EEEEcCCCCCCC
Q 021557 158 DEQDDMFILVAPQNAVGNCIIDDMK--AMTDAAGTRP-VILINPRLKDLP 204 (311)
Q Consensus 158 ~~~d~~~Ivv~P~~~v~~~el~~ve--~l~~~a~~rP-vVllNp~Led~~ 204 (311)
..+.|+||+|.-.-+ ++-.-| =+......+| |-++|.+||-.+
T Consensus 230 cldaDVfVlV~NaEn----tlt~sek~Ff~~vs~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 230 CLDADVFVLVVNAEN----TLTLSEKQFFHKVSEEKPNIFILNNKWDASA 275 (749)
T ss_pred hhcCCeEEEEecCcc----HhHHHHHHHHHHhhccCCcEEEEechhhhhc
Confidence 456688888876665 544333 2233334466 667899999877
No 17
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.53 E-value=1.3e+02 Score=26.69 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=26.1
Q ss_pred CEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCCCCCCCCCcCcccchhhHhHHHhhhcCcEeEEE
Q 021557 162 DMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFF 231 (311)
Q Consensus 162 ~~~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~Fl~sfe~vYyl 231 (311)
+++|++- .. -.+.+-..|... +-|++|+|.++.+.. .-+.. ..+.+.+..++.|..++--
T Consensus 97 ~~~i~~E--tE----lWPnll~~a~~~-~ip~~LvNarls~~s-~~~~~--~~~~~~r~~l~~f~~i~aq 156 (186)
T PF04413_consen 97 DLLIWVE--TE----LWPNLLREAKRR-GIPVVLVNARLSERS-FRRYR--RFPFLFRPLLSRFDRILAQ 156 (186)
T ss_dssp SEEEEES----------HHHHHH------S-EEEEEE-----------------HHHHHHGGG-SEEEES
T ss_pred CEEEEEc--cc----cCHHHHHHHhhc-CCCEEEEeeeecccc-chhhh--hhHHHHHHHHHhCCEEEEC
Confidence 6666652 22 456665555555 789999999998755 22322 3356778888999888754
No 18
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.10 E-value=4.9e+02 Score=24.00 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCCCeeEEEecCCcch
Q 021557 46 YFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGE 115 (311)
Q Consensus 46 ~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g~rvrI~fPD~~g~ 115 (311)
+..+.+.++++.|-+.|. .|.+.++-.. +. ..+...+++..+.+.|.. .|+++|+.|.
T Consensus 107 ~~~~~~~~~i~~a~~~G~---~v~~~~~~~~------~~--~~~~~~~~~~~~~~~G~~-~i~l~DT~G~ 164 (259)
T cd07939 107 WVLDQLRRLVGRAKDRGL---FVSVGAEDAS------RA--DPDFLIEFAEVAQEAGAD-RLRFADTVGI 164 (259)
T ss_pred HHHHHHHHHHHHHHHCCC---eEEEeeccCC------CC--CHHHHHHHHHHHHHCCCC-EEEeCCCCCC
Confidence 356778888888888886 3455554332 11 355666777777666653 6999996664
No 19
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=21.89 E-value=2.9e+02 Score=26.02 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhCCCeeEEEecCCcc
Q 021557 89 ELVRVIALSFADDGKRVKVCVQGSMG 114 (311)
Q Consensus 89 ~lar~~~~~l~~~g~rvrI~fPD~~g 114 (311)
-+-|.++..|+..|.||.++--|+++
T Consensus 25 GIGrAia~~la~~Garv~v~dl~~~~ 50 (256)
T KOG1200|consen 25 GIGRAIAQLLAKKGARVAVADLDSAA 50 (256)
T ss_pred hHHHHHHHHHHhcCcEEEEeecchhh
Confidence 46788999999999999999988543
No 20
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.86 E-value=76 Score=25.27 Aligned_cols=32 Identities=41% Similarity=0.552 Sum_probs=24.7
Q ss_pred EEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 164 FILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 164 ~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
+|++.||-. ..++.++++++.. +.|++.++|+
T Consensus 53 vill~pqi~---~~~~~i~~~~~~~-~ipv~~I~~~ 84 (95)
T TIGR00853 53 VVLLAPQVA---YMLPDLKKETDKK-GIPVEVINGA 84 (95)
T ss_pred EEEECchHH---HHHHHHHHHhhhc-CCCEEEeChh
Confidence 778888877 2677777777665 6899999986
No 21
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.78 E-value=4.2e+02 Score=26.02 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCCCeeEEEecCCcch
Q 021557 45 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGE 115 (311)
Q Consensus 45 ~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g~rvrI~fPD~~g~ 115 (311)
++..+.+.++++.|-+.|.. |.+.++- ..+. ..+.+.++++.+.+.|-. +|+++|+.|.
T Consensus 109 ~e~l~~~~~~i~~ak~~g~~---v~~~~ed------~~r~--~~~~l~~~~~~~~~~Ga~-~i~l~DT~G~ 167 (365)
T TIGR02660 109 AWVLERLARLVSFARDRGLF---VSVGGED------ASRA--DPDFLVELAEVAAEAGAD-RFRFADTVGI 167 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCE---EEEeecC------CCCC--CHHHHHHHHHHHHHcCcC-EEEEcccCCC
Confidence 34677888889888888843 4555442 2222 245666777777666653 6999996664
No 22
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=21.72 E-value=7.7e+02 Score=24.20 Aligned_cols=151 Identities=13% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHH----------HHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHH
Q 021557 26 NWKGIPTRLNNIPHSREIRNYFYDDV----------LQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIA 95 (311)
Q Consensus 26 ~~~~~p~~ln~vP~~~e~~~~~~~qA----------~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~ 95 (311)
.+-.+=+..|..|.|..+.+.+.+.+ ...+..|+.+=..-..-+.-+.+=. +.++...++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnG----------sde~i~~l~ 92 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDPDYRELRAALAEYYGVVDPENVLVGNG----------SDELIELLV 92 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCC----------hHHHHHHHH
Confidence 46667778888888876655332211 2344444433222111111122211 457777899
Q ss_pred HHHhhCCCeeEEEecCCcchhhhcCCCccchhhhhh-hhhcccCCCCCccceeeeccCCCCCCCCCCCEEEEEeccCCCc
Q 021557 96 LSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKI-LEFMDWGDYGAKGTFVEIGSIGANEVDEQDDMFILVAPQNAVG 174 (311)
Q Consensus 96 ~~l~~~g~rvrI~fPD~~g~aala~~~~~l~g~~~~-~~~~dw~~~~~~~~f~~~~~i~~~~v~~~d~~~Ivv~P~~~v~ 174 (311)
+.+...|.++-++.|. -+.......- .|+.-+ ....+|... +..+- ..+.++.+++++.+|-+.-|
T Consensus 93 ~~~~~~gd~vl~~~Pt-f~~Y~~~a~~---~g~~~~~v~~~~~~~d--------~~~~~-~~~~~~~~lv~i~nPNNPTG 159 (356)
T COG0079 93 RAFVEPGDTVLIPEPT-FSMYEIAAQL---AGAEVVKVPLKEFRLD--------LDAIL-AAIRDKTKLVFLCNPNNPTG 159 (356)
T ss_pred HHhhcCCCEEEEcCCC-hHHHHHHHHh---cCCeEEEecccccccC--------HHHHH-HhhhcCCCEEEEeCCCCCCC
Confidence 9999888888888885 6653331100 111000 000111110 00000 12334578999999999877
Q ss_pred c-ccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 175 N-CIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 175 ~-~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
+ -..++++++.+.....-+|++-=.
T Consensus 160 ~~~~~~~l~~l~~~~~~~~~vVvDEA 185 (356)
T COG0079 160 TLLPREELRALLEALPEGGLVVIDEA 185 (356)
T ss_pred CCCCHHHHHHHHHhCCCCcEEEEeCc
Confidence 4 458888888887644455555433
No 23
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.41 E-value=4.2e+02 Score=21.34 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=52.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCC--Cch------hh----h-hhhhHHHHHHHHHHHhh
Q 021557 35 NNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNP--EMD------VY----R-IGTLMELVRVIALSFAD 100 (311)
Q Consensus 35 n~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~-L~~--~~D------~~----~-~~~~~~lar~~~~~l~~ 100 (311)
.|+|.+.+.++.|.+...+++..++.-....+.|.++=+. +-. ..| .. + .....+++++|++.|.+
T Consensus 8 tn~~~~~~~~~~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~ 87 (116)
T PTZ00397 8 TNVNATDDQADAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKILAS 87 (116)
T ss_pred ecCCCccccHHHHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 3888888878889999999999999877766666555332 100 111 00 0 12356788888888864
Q ss_pred ----CCCeeEEEecC
Q 021557 101 ----DGKRVKVCVQG 111 (311)
Q Consensus 101 ----~g~rvrI~fPD 111 (311)
...|+-|.|-|
T Consensus 88 ~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 88 HLKVKSERVYIEFKD 102 (116)
T ss_pred HhCcCcccEEEEEEE
Confidence 35689999998
Done!