Query 021557
Match_columns 311
No_of_seqs 128 out of 176
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:51:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5s_A Gilaa.00834.A, macropha 56.8 47 0.0016 26.8 8.1 85 26-111 18-122 (135)
2 3fwu_A Macrophage migration in 53.7 49 0.0017 26.6 7.7 87 25-111 16-122 (133)
3 3fwt_A Macrophage migration in 28.1 63 0.0022 25.9 4.4 85 27-111 18-122 (133)
4 2rp4_A Transcription factor P5 28.0 26 0.00089 26.2 1.7 25 251-280 8-32 (76)
5 4dh4_A MIF; trimer, isomerase; 25.9 1E+02 0.0034 23.6 5.0 77 35-111 7-101 (114)
6 3hhl_A RPA0582; alpha-beta-bar 25.7 36 0.0012 28.1 2.4 22 178-199 10-31 (143)
7 3nbm_A PTS system, lactose-spe 24.2 39 0.0013 26.5 2.3 32 164-199 56-87 (108)
8 3l9k_W Dynein intermediate cha 21.7 1E+02 0.0035 20.1 3.5 27 36-63 8-34 (38)
9 1vq8_K 50S ribosomal protein L 15.5 97 0.0033 25.5 2.9 33 189-223 91-123 (132)
10 3qua_A Putative uncharacterize 15.2 99 0.0034 26.8 3.1 34 161-198 118-155 (199)
No 1
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=56.82 E-value=47 Score=26.83 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=59.0
Q ss_pred CCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCC-CCCc--h------hhhhh-----hhHH
Q 021557 26 NWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPEL-NPEM--D------VYRIG-----TLME 89 (311)
Q Consensus 26 ~~~~~p~-~ln-~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L-~~~~--D------~~~~~-----~~~~ 89 (311)
.-..||. ++. |++.+.+.++.|.++..+++..++.-....+.|.++ +.- -..+ | ..-+| ..-.
T Consensus 18 ~~~~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~~ 96 (135)
T 3t5s_A 18 GPGSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNPS 96 (135)
T ss_dssp ---CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCHH
T ss_pred CCCCcceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCch
Confidence 4456998 444 899999888889999999999999888878888888 433 1111 1 11122 2457
Q ss_pred HHHHHHHHHhh----CCCeeEEEecC
Q 021557 90 LVRVIALSFAD----DGKRVKVCVQG 111 (311)
Q Consensus 90 lar~~~~~l~~----~g~rvrI~fPD 111 (311)
++..|+..|.+ ...|+-|.|-|
T Consensus 97 ~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 97 ISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp HHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhcccCccEEEEEecc
Confidence 88888888853 34688999988
No 2
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=53.69 E-value=49 Score=26.64 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCC-CCCc--h------hhhh-----hhhH
Q 021557 25 DNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPEL-NPEM--D------VYRI-----GTLM 88 (311)
Q Consensus 25 ~~~~~~p~-~ln-~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L-~~~~--D------~~~~-----~~~~ 88 (311)
.....||. ++. |++.+.+.++.|.+++.+++..++.-....+.|.++=..- -..+ | ..-+ ....
T Consensus 16 ~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e~n~ 95 (133)
T 3fwu_A 16 PRGSHMPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPE 95 (133)
T ss_dssp -----CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHH
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHHHHH
Confidence 34556998 444 9999999998899999999999998877777777774321 1011 1 0111 2356
Q ss_pred HHHHHHHHHHhh----CCCeeEEEecC
Q 021557 89 ELVRVIALSFAD----DGKRVKVCVQG 111 (311)
Q Consensus 89 ~lar~~~~~l~~----~g~rvrI~fPD 111 (311)
+++..|+..|.+ ...|+-|.|-|
T Consensus 96 ~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 96 KVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 788888888853 34688999988
No 3
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=28.14 E-value=63 Score=25.91 Aligned_cols=85 Identities=8% Similarity=-0.012 Sum_probs=58.0
Q ss_pred CCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCC-CCCc--h------hhhh-----hhhHHH
Q 021557 27 WKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPEL-NPEM--D------VYRI-----GTLMEL 90 (311)
Q Consensus 27 ~~~~p~-~ln-~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~L-~~~~--D------~~~~-----~~~~~l 90 (311)
...||. ++. |++.+.+.++.|.++..+++..++.-....+.|.++=+.- -..+ | ..-+ ...-.+
T Consensus 18 ~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~n~~~ 97 (133)
T 3fwt_A 18 GSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMM 97 (133)
T ss_dssp CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHHHHHH
Confidence 445887 344 8999988888899999999999998888887777764321 1111 1 1111 234578
Q ss_pred HHHHHHHHhh----CCCeeEEEecC
Q 021557 91 VRVIALSFAD----DGKRVKVCVQG 111 (311)
Q Consensus 91 ar~~~~~l~~----~g~rvrI~fPD 111 (311)
+..|++.|.+ ...|+-|.|-|
T Consensus 98 s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 98 TPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEE
Confidence 8888888853 34578888887
No 4
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.99 E-value=26 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.3
Q ss_pred cCCCceEEEEeccCCCCCceEEeeecCCCC
Q 021557 251 YPNGYELYKRVDVPSGGEKYVILSTFTEKP 280 (311)
Q Consensus 251 YPgpWqV~~~~~~~~~~g~y~~v~~~~~rP 280 (311)
-|..|+|=+-.+ |.|+++-+.+.+-
T Consensus 8 ~p~dW~VsRt~d-----GdYrL~itcpkKe 32 (76)
T 2rp4_A 8 SAAEWNVSRTPD-----GDYRLAITCPNKE 32 (76)
T ss_dssp SSCCCEEECCTT-----TBEEEEEEESCHH
T ss_pred CCccceeeeccC-----CceEEEEEeCcHH
Confidence 588999998554 8999999987653
No 5
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=25.88 E-value=1e+02 Score=23.59 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=53.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--h------hhhh-----hhhHHHHHHHHHHHhh
Q 021557 35 NNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRI-----GTLMELVRVIALSFAD 100 (311)
Q Consensus 35 n~vP~~~e~~~~~~~qA~~A~~~Al~dG~~rl~VEl~fP~-L~~~~--D------~~~~-----~~~~~lar~~~~~l~~ 100 (311)
.|+|.+.+..+-|..++.+++..++.-...++.|.++-.. +-..+ | ..-+ ...-+++..|++.|.+
T Consensus 7 TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~ 86 (114)
T 4dh4_A 7 CPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACER 86 (114)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3999988888889999999999999888888777776321 11111 1 0111 2345788888888753
Q ss_pred ----CCCeeEEEecC
Q 021557 101 ----DGKRVKVCVQG 111 (311)
Q Consensus 101 ----~g~rvrI~fPD 111 (311)
...|+-|.|-|
T Consensus 87 ~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 87 HLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHCCCGGGEEEEEEE
T ss_pred HhCcCcccEEEEEEe
Confidence 34588888887
No 6
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=25.66 E-value=36 Score=28.10 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCcEEEEcCC
Q 021557 178 IDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 178 l~~ve~l~~~a~~rPvVllNp~ 199 (311)
-++++++.+.-.++||+|+|.-
T Consensus 10 ~~~~~~~~~~~~~~pv~MlNLl 31 (143)
T 3hhl_A 10 KEVFAQFRANDREGPIHMLNLV 31 (143)
T ss_dssp HHHHHHHHHCCCSSCEEEEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEehh
Confidence 3667777777678999999964
No 7
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=24.16 E-value=39 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=25.4
Q ss_pred EEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 164 FILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 164 ~Ivv~P~~~v~~~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
+|++.||-. ..++.+++.++.. +.||.++|+.
T Consensus 56 vvLLgPQV~---y~~~~ik~~~~~~-~ipV~vI~~~ 87 (108)
T 3nbm_A 56 LIILAPQVR---SYYREMKVDAERL-GIQIVATRGM 87 (108)
T ss_dssp EEEECGGGG---GGHHHHHHHHTTT-TCEEEECCHH
T ss_pred EEEEChHHH---HHHHHHHHHhhhc-CCcEEEeCHH
Confidence 467799876 2788888888766 8999999975
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=21.71 E-value=1e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 021557 36 NIPHSREIRNYFYDDVLQATQRAVNDGR 63 (311)
Q Consensus 36 ~vP~~~e~~~~~~~qA~~A~~~Al~dG~ 63 (311)
.|=+|-|+.. |++.+.+-+++||.+..
T Consensus 8 ~I~~S~~F~~-F~~rsskviERAL~e~y 34 (38)
T 3l9k_W 8 MIILSENFQR-FVVRAGRVIERALSENV 34 (38)
T ss_dssp HHHTSHHHHH-HHHHHHHHHHHHHHHSS
T ss_pred HHhcCHHHHH-HHHHHHHHHHHHHcccc
Confidence 3446778888 99999999999998765
No 9
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=15.53 E-value=97 Score=25.50 Aligned_cols=33 Identities=3% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCcEEEEcCCCCCCCCCcCcccchhhHhHHHhhh
Q 021557 189 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAA 223 (311)
Q Consensus 189 ~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~Fl~ 223 (311)
.|--+||+|++.+-.+ .-|.+..+|++|+.|..
T Consensus 91 ddNA~Vlin~~g~p~G--TrI~GPVarElr~~~~K 123 (132)
T 1vq8_K 91 EDNAAVIVDENEDPRG--TELKGPIAREVAQRFGS 123 (132)
T ss_dssp SSCEEEEECTTSCBSS--SCBCSEECHHHHHHSHH
T ss_pred CCceEEEECCCCCEeE--EEEEcCcCHHHHhcccH
Confidence 3566999999988766 33443788999987653
No 10
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=15.22 E-value=99 Score=26.84 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=19.7
Q ss_pred CCEEEEEeccCCCccccHHHHHHHHHH--c--CCCcEEEEcC
Q 021557 161 DDMFILVAPQNAVGNCIIDDMKAMTDA--A--GTRPVILINP 198 (311)
Q Consensus 161 d~~~Ivv~P~~~v~~~el~~ve~l~~~--a--~~rPvVllNp 198 (311)
.|+ +++.|.-. | +|+.+-++... . .++|||++|.
T Consensus 118 sda-~IalPGG~-G--TldEl~e~lt~~qlg~~~kPvvlln~ 155 (199)
T 3qua_A 118 SDA-FIALPGGI-G--TLEEFFEAWTAGYLGMHDKPLILLDP 155 (199)
T ss_dssp CSE-EEECSCCH-H--HHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred cCc-cEEeCCCc-c--HHHHHHHHHHHHHhccCCCCEEEEcC
Confidence 355 45556554 2 55544443332 1 3799999996
Done!