Query 021557
Match_columns 311
No_of_seqs 128 out of 176
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 05:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021557.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021557hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t9ha2 c.37.1.8 (A:68-298) Pr 23.4 31 0.0022 28.7 3.9 43 157-199 8-51 (231)
2 d1lu4a_ c.47.1.10 (A:) Soluble 21.4 65 0.0047 23.1 5.1 88 177-290 42-132 (134)
3 d1u0la2 c.37.1.8 (A:69-293) Pr 21.3 40 0.0029 27.8 4.2 43 157-199 8-51 (225)
4 d1rcua_ c.129.1.1 (A:) Hypothe 15.3 65 0.0047 24.9 3.9 17 87-103 21-37 (170)
5 d1msza_ d.68.7.1 (A:) SmuBP-2 13.2 1.2E+02 0.0087 19.6 4.3 38 49-98 3-41 (62)
6 d1vqok1 b.39.1.1 (K:1-132) Rib 12.9 65 0.0048 24.5 3.1 32 189-222 91-122 (132)
7 d1byra_ d.136.1.1 (A:) Nucleas 12.5 2.3E+02 0.017 20.0 6.9 48 51-111 14-61 (152)
8 d1t35a_ c.129.1.1 (A:) Hypothe 12.4 76 0.0055 24.6 3.5 37 159-199 96-136 (179)
9 d2j01o1 b.39.1.1 (O:1-122) Rib 12.2 67 0.0049 24.0 3.0 32 189-222 80-112 (122)
10 d1um8a_ c.37.1.20 (A:) ClpX {H 11.5 66 0.0048 28.0 3.1 26 34-59 2-33 (364)
No 1
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.36 E-value=31 Score=28.71 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 157 VDEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 157 v~~~d~~~Ivv~P-~~~v~~~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
+..=|.++||++. ++..+..-++..--+++..+-.|+|+||=.
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~ 51 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKM 51 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4456778888754 455433334444445555666888888854
No 2
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.36 E-value=65 Score=23.05 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHcCCCcEEEEcCCCCCCCCCcCcccchhhHhHHHhhhcCcEeEEEEEecccCcccceeeEEEeec---CC
Q 021557 177 IIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTY---PN 253 (311)
Q Consensus 177 el~~ve~l~~~a~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~Fl~sfe~vYylr~l~~~g~~~p~~GaLfR~Y---Pg 253 (311)
+++.++++.+...+-.+|.+|..= + ...-.+|++.+..-|-+ .+... +.+.+.| .=
T Consensus 42 ~~p~l~~~~~~~~~v~~v~v~~~~-~------------~~~~~~~~~~~~~~~p~-~~d~~-------~~~~~~~~v~~~ 100 (134)
T d1lu4a_ 42 EAPSLSQVAAANPAVTFVGIATRA-D------------VGAMQSFVSKYNLNFTN-LNDAD-------GVIWARYNVPWQ 100 (134)
T ss_dssp HHHHHHHHHHHCTTSEEEEEECSS-C------------HHHHHHHHHHHTCCSEE-EECTT-------SHHHHHTTCCSS
T ss_pred cchhHHHHhhhhcccccccccccc-c------------hhhhhhhhhhhccccce-eeCch-------HHHHHHcCCCcC
Confidence 788888888777677888888631 1 12234566665554443 23333 3333333 23
Q ss_pred CceEEEEeccCCCCCceEEeeecCCCCCHHHHHHHHc
Q 021557 254 GYELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFL 290 (311)
Q Consensus 254 pWqV~~~~~~~~~~g~y~~v~~~~~rPs~eel~~~l~ 290 (311)
|.-++. +. +|.-+.+.....+.+.++|...|.
T Consensus 101 P~~~li-d~----~G~i~~v~~~~g~~~~~~l~~~l~ 132 (134)
T d1lu4a_ 101 PAFVFY-RA----DGTSTFVNNPTAAMSQDELSGRVA 132 (134)
T ss_dssp SEEEEE-CT----TSCEEEECCSSSCCCHHHHHHHHH
T ss_pred CEEEEE-eC----CCeEEEEeccCCCCCHHHHHHHHH
Confidence 444555 33 366666777777889999998874
No 3
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.29 E-value=40 Score=27.82 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 021557 157 VDEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 199 (311)
Q Consensus 157 v~~~d~~~Ivv~P-~~~v~~~el~~ve~l~~~a~~rPvVllNp~ 199 (311)
+..=|.++||++. ++..+..-++..--+++..+-.|+|+||=.
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~ 51 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKM 51 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3455778888863 444332234444445666677889988853
No 4
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=15.27 E-value=65 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHhhCCC
Q 021557 87 LMELVRVIALSFADDGK 103 (311)
Q Consensus 87 ~~~lar~~~~~l~~~g~ 103 (311)
..++|.++.+.|++.|.
T Consensus 21 ~~~~a~~lG~~la~~g~ 37 (170)
T d1rcua_ 21 LRDICLELGRTLAKKGY 37 (170)
T ss_dssp GHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 46788888888887774
No 5
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.22 E-value=1.2e+02 Score=19.64 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCceeEEEEEcCC-CCCCchhhhhhhhHHHHHHHHHHH
Q 021557 49 DDVLQATQRAVNDGRTRLKVEINIPE-LNPEMDVYRIGTLMELVRVIALSF 98 (311)
Q Consensus 49 ~qA~~A~~~Al~dG~~rl~VEl~fP~-L~~~~D~~~~~~~~~lar~~~~~l 98 (311)
++..+.+..-+.+.++ ++.||+ |+.. --.++-++|..+
T Consensus 3 ~~~~~~i~~Fv~s~~~----~~~f~p~m~~~--------~R~~vH~lA~~~ 41 (62)
T d1msza_ 3 DHFRAMIVEFMASKKM----QLEFPPSLNSH--------DRLRVHQIAEEH 41 (62)
T ss_dssp HHHHHHHHHHHHHTCS----EEEECTTCCSH--------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCC----EEEeCCCCCHH--------HHHHHHHHHHHc
Confidence 4556667777777776 468977 8753 234555666555
No 6
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=12.89 E-value=65 Score=24.50 Aligned_cols=32 Identities=3% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCCCCCCcCcccchhhHhHHHhh
Q 021557 189 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYA 222 (311)
Q Consensus 189 ~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~Fl 222 (311)
.+--+||+|++.+-.++ =|.+..+|++|++|.
T Consensus 91 ddNa~VLi~~~~~p~GT--RI~GpV~~Elr~k~~ 122 (132)
T d1vqok1 91 EDNAAVIVDENEDPRGT--ELKGPIAREVAQRFG 122 (132)
T ss_dssp SSCEEEEECTTSCBSSS--CBCSCBCHHHHHHSH
T ss_pred CCCEEEEECCCCCEeee--EEeccHhHHHHhhhh
Confidence 45679999999887663 343367899998775
No 7
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=12.48 E-value=2.3e+02 Score=20.00 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCceeEEEEEcCCCCCCchhhhhhhhHHHHHHHHHHHhhCCCeeEEEecC
Q 021557 51 VLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQG 111 (311)
Q Consensus 51 A~~A~~~Al~dG~~rl~VEl~fP~L~~~~D~~~~~~~~~lar~~~~~l~~~g~rvrI~fPD 111 (311)
+..++.++|..=++. |.|..+.+.+ -++...|..+ ++.|-+|+|++.+
T Consensus 14 ~~~~i~~~I~~A~~~--I~I~~~~~~~----------~~i~~aL~~a-~~rGV~Vril~~~ 61 (152)
T d1byra_ 14 ARVLVLSAIDSAKTS--IRMMAYSFTA----------PDIMKALVAA-KKRGVDVKIVIDE 61 (152)
T ss_dssp HHHHHHHHHHHCSSE--EEEEESSBCC----------HHHHHHHHHH-HHTTCEEEEEEES
T ss_pred HHHHHHHHHHhCCcE--EEEEEEeecC----------HHHHHHHHHH-HhcCCeEEEEEEe
Confidence 455666777665665 4678888864 3455555444 3679999999987
No 8
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=12.43 E-value=76 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=21.2
Q ss_pred CCCCEEEEEeccCCCccccHHHHHHHHHHc----CCCcEEEEcCC
Q 021557 159 EQDDMFILVAPQNAVGNCIIDDMKAMTDAA----GTRPVILINPR 199 (311)
Q Consensus 159 ~~d~~~Ivv~P~~~v~~~el~~ve~l~~~a----~~rPvVllNp~ 199 (311)
+..|+|| +.|.-. | +|+.+-++.... .++|+|++|-.
T Consensus 96 ~~sdafI-~lPGG~-G--TLdEl~e~l~~~ql~~~~kPiil~n~~ 136 (179)
T d1t35a_ 96 ELADGFI-SMPGGF-G--TYEELFEVLCWAQIGIHQKPIGLYNVN 136 (179)
T ss_dssp HHCSEEE-ECSCCH-H--HHHHHHHHHHTTSCSSCCCCEEEECGG
T ss_pred HhcCeEE-EecCcc-c--hhhHHHHHHHHHHhhccCCCeEeecCC
Confidence 3446665 667766 1 444443333221 36899999954
No 9
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=12.24 E-value=67 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCCCCCCcCcccchhhHhHHH-hh
Q 021557 189 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLE-YA 222 (311)
Q Consensus 189 ~~rPvVllNp~Led~~s~~Gig~~~~R~~r~~-Fl 222 (311)
.+--+||+|.+.+-.+ .-|.+..+|++|+. |.
T Consensus 80 ~~Na~VLl~~~~~p~G--TrI~Gpv~~elr~~~~~ 112 (122)
T d2j01o1 80 DDNAAVIINNQLEPRG--TRVFGPVARELREKGFM 112 (122)
T ss_dssp SSCEEEEECTTSCCSS--SCCCSCCCTHHHHHCCH
T ss_pred CCCEEEEECCCCCEee--eEEeccchHHHhhcCCc
Confidence 4667999999988776 34544678999887 54
No 10
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=11.46 E-value=66 Score=27.96 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.3
Q ss_pred ccCCCCCHHHHHHHHH------HHHHHHHHHH
Q 021557 34 LNNIPHSREIRNYFYD------DVLQATQRAV 59 (311)
Q Consensus 34 ln~vP~~~e~~~~~~~------qA~~A~~~Al 59 (311)
|.-+|+|+|+.+++-+ +|.+|+..|+
T Consensus 2 ~~~~~tP~ei~~~L~~~ViGQd~Akkava~Av 33 (364)
T d1um8a_ 2 LSYIPAPKELKAVLDNYVIGQEQAKKVFSVAV 33 (364)
T ss_dssp CSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCeecChHHHHHHHHHHH
Confidence 6678999999998765 8999998887
Done!