BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021558
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 139/248 (56%), Positives = 183/248 (73%), Gaps = 4/248 (1%)
Query: 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLH 119
++ EL V ++ + K +A TLP +++ K+D+QWV VL+EGWA+PL+GFMRE E+LQ LH
Sbjct: 14 EVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLH 73
Query: 120 FNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKE 179
F+ L DG V+N+SVPIVL E K R+ T AL+ + VAIL + E ++H KE
Sbjct: 74 FDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKE 130
Query: 180 ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239
ER AR WGTT PY+ + + G+WLIGGDL+VL+ + ++DGLD++RL+P +L+ +F
Sbjct: 131 ERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFK 189
Query: 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
NADAVFAFQLRNPVHNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL WR
Sbjct: 190 DMNADAVFAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWR 249
Query: 300 MKQHEKVL 307
MKQH VL
Sbjct: 250 MKQHAAVL 257
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 182/248 (73%), Gaps = 4/248 (1%)
Query: 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLH 119
++ EL V ++ + K +A TLP +++ K+D+QWV VL+EGWA+PL+GFMRE E+LQ LH
Sbjct: 233 EVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLH 292
Query: 120 FNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKE 179
F+ L DG V+N+SVPIVL E K R+ T AL+ + VAIL + E ++H KE
Sbjct: 293 FDCLL--DGGVINLSVPIVLTATHEDKERLDGCTAFALM-YEGRRVAILRNPEFFEHRKE 349
Query: 180 ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239
ER AR WGTT PY+ + + G+WLIGGDL+VL+ + ++DGLD++RL+P +L+ +F
Sbjct: 350 ERCARQWGTTCKNHPYI-KMVMEQGDWLIGGDLQVLDRVYWNDGLDQYRLTPTELKQKFK 408
Query: 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
NADAV AFQLRNPVHNGHALLM DT ++LLE GY+ P+LLLHPLGG+TK DDVPL WR
Sbjct: 409 DMNADAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWTKDDDVPLMWR 468
Query: 300 MKQHEKVL 307
MKQH VL
Sbjct: 469 MKQHAAVL 476
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 15/256 (5%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 4 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 63
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 64 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 119
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPA 232
+YK K R + P P + AG++ +GG LE ++ +++D R +PA
Sbjct: 120 VYKPNKTIEAERVF-RGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYD-YPGLRKTPA 177
Query: 233 QLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292
QLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 178 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTKPG 231
Query: 293 DVPLSWRMKQHEKVLR 308
D+ R++ ++++++
Sbjct: 232 DIDHHTRVRVYQEIIK 247
>pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
Chlorate
pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
Thiosulfate
Length = 510
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 15/256 (5%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 63 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPA 232
+YK P + A P P + AG++ +GG LE ++ +++D R +PA
Sbjct: 119 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYD-YPGLRKTPA 176
Query: 233 QLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292
QLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 177 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTKPG 230
Query: 293 DVPLSWRMKQHEKVLR 308
D+ R++ ++++++
Sbjct: 231 DIDHHTRVRVYQEIIK 246
>pdb|1J70|A Chain A, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|B Chain B, Crystal Structure Of Yeast Atp Sulfurylase
pdb|1J70|C Chain C, Crystal Structure Of Yeast Atp Sulfurylase
Length = 514
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 15/256 (5%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 7 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 66
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 67 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 122
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPA 232
+YK P + A P P + AG++ +GG LE ++ +++D R +PA
Sbjct: 123 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYD-YPGLRKTPA 180
Query: 233 QLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292
QLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 181 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTKPG 234
Query: 293 DVPLSWRMKQHEKVLR 308
D+ R++ ++++++
Sbjct: 235 DIDHHTRVRVYQEIIK 250
>pdb|1R6X|A Chain A, The Crystal Structure Of A Truncated Form Of Yeast Atp
Sulfurylase, Lacking The C-Terminal Aps Kinase-Like
Domain, In Complex With Sulfate
Length = 395
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 15/256 (5%)
Query: 56 PDGGKLTELIVDKSLRD---VRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRES 112
P GG L +LI +L+ + + +++ + LT L + ++ G SPL+GF+ E+
Sbjct: 3 PHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNEN 62
Query: 113 EFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIE 172
++ + RL DG++ ++PI L +D+ +I TR+AL D+ +AIL +
Sbjct: 63 DYSSVV--TDSRLADGTL--WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQD 118
Query: 173 IYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPA 232
+YK P + A P P + AG++ +GG LE ++ +++D R +PA
Sbjct: 119 VYK-PNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYD-YPGLRKTPA 176
Query: 233 QLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292
QLR EF R D V AFQ RNP+H H L R N +L+HP+ G TK
Sbjct: 177 QLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAARE------ANAKVLIHPVVGLTKPG 230
Query: 293 DVPLSWRMKQHEKVLR 308
D+ R++ ++++++
Sbjct: 231 DIDHHTRVRVYQEIIK 246
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 13/227 (5%)
Query: 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLA 140
L I++++ + + +L+ G +PL FM E ++ + S+RL G++ +PI L
Sbjct: 7 LKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVV--ESMRLKSGTL--FPIPITLP 62
Query: 141 IDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAI 200
++ E + + E + L D + +AI+ E+YK E GTT P P V +
Sbjct: 63 MEKEIAKDLKEGEWIVLRDPKNVPLAIMRVEEVYKWNLEYEAKNVLGTTDPRHPLVAEMH 122
Query: 201 TYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHA 260
T+ G + I G+L+V++ KY+D +R +P Q+R+E D + AFQ RNP+H H
Sbjct: 123 TW-GEYYISGELKVIQLPKYYD-FPEYRKTPKQVREEIKSLGLDKIVAFQTRNPMHRVHE 180
Query: 261 LLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVL 307
L T+R + ++G LLLHP+ G TK DV + RM+ + KVL
Sbjct: 181 EL---TKRAMEKVGGG---LLLHPVVGLTKPGDVDVYTRMRIY-KVL 220
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 129/258 (50%), Gaps = 20/258 (7%)
Query: 56 PDGGKLTELIVDKSLRDVR-KREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEF 114
P GG L +L+ + R EA +LP + LT+ L + ++ G SPL GFM ++++
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 115 LQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVD-SDDNVVAILNDI 171
+ N RL DG+V +M PI L E ++++ ++R+ L D DD +AIL
Sbjct: 65 DRVCEDN--RLADGNVFSM--PITLDASQEVIDEKKLQAASRITLRDFRDDRNLAILTID 120
Query: 172 EIYKHPKEERIARTWGT--TAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRL 229
+IY+ K + +G P + Y++ + + IGG +E + + ++D + R
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYV-ALRY 176
Query: 230 SPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT 289
+PA+LR F K V AFQ RNP+H H L R + +L+HP+ G T
Sbjct: 177 TPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLT 230
Query: 290 KADDVPLSWRMKQHEKVL 307
K D+ R++ ++ +L
Sbjct: 231 KPGDIDHFTRVRAYQALL 248
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 20/258 (7%)
Query: 56 PDGGKLTELIVDKSLRDVR-KREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEF 114
P GG L +L+ + R EA +LP + LT+ L + ++ G SPL GFM ++++
Sbjct: 5 PHGGVLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADY 64
Query: 115 LQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVD-SDDNVVAILNDI 171
+ N RL DG+V +M PI L E ++++ +R+ L D DD +AIL
Sbjct: 65 DRVCEDN--RLADGNVFSM--PITLDASQEVIDEKKLQAGSRITLRDFRDDRNLAILTID 120
Query: 172 EIYKHPKEERIARTWGT--TAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRL 229
+IY+ K + +G P + Y++ + + IGG +E + + ++D + R
Sbjct: 121 DIYRPDKTKEAKLVFGGDPEHPAIVYLNNTVK---EFYIGGKIEAVNKLNHYDYV-ALRY 176
Query: 230 SPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT 289
+PA+LR F K V AFQ RNP+H H L R + +L+HP+ G T
Sbjct: 177 TPAELRVHFDKLGWSRVVAFQTRNPMHRAHRELTVRAARS------RQANVLIHPVVGLT 230
Query: 290 KADDVPLSWRMKQHEKVL 307
K D+ R++ ++ +L
Sbjct: 231 KPGDIDHFTRVRAYQALL 248
>pdb|1V47|A Chain A, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
pdb|1V47|B Chain B, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
Length = 349
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 80 TLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVL 139
TLP + + + + + L+ G P+ GFM E L H +RL G V ++PI+L
Sbjct: 4 TLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAH--EMRLPTGEV--WTIPILL 59
Query: 140 AIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQA 199
+K R+G VAL+ + V A+L+ E Y+ E +GT + P V +
Sbjct: 60 QF--REKPRVGPGNTVALLHGGERV-ALLHVAEAYELDLEALARAVFGTDSETHPGVAR- 115
Query: 200 ITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGH 259
+ G + + G +EVL+P + L++ +P ++R F +R V AFQ RN H H
Sbjct: 116 LYGKGPYALAGRVEVLKP-RPRTPLEK---TPEEVRAFFRQRGWRKVVAFQTRNAPHRAH 171
Query: 260 ALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLR 308
L+ R LE+ +L+HP+ G K DD P ++ ++ ++R
Sbjct: 172 EYLI----RLGLELADG---VLVHPILGAKKPDDFPTEVIVEAYQALIR 213
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 77 EAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVP 136
EA +LP + ++ +L G+ SPL GFM ++ L + S+ L DG VP
Sbjct: 27 EAESLPSVIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQ--SMTLTDGRF--FPVP 82
Query: 137 IVLAIDDEQKRRIGESTRVALVDS--DDNVVAILNDIEIYKHPKEERIA----RTWGTTA 190
++ + E I +TR+AL D + N V + D+ + + ++A + +GT+
Sbjct: 83 LLCLL--ESADAIAGATRIALRDPNVEGNPVLAVMDVTAVEQVSDAQMALMTEQVYGTSD 140
Query: 191 PGLPYVDQAITYAGNWLIGGDLEVLEPIKYH-DGLDRFRLSPAQLRDEFSKRNADAVFAF 249
P P V + G I G ++VL + D D FR + ++R E +R + AF
Sbjct: 141 PKHPGV-ETFNSQGRTAISGPIQVLNFSYFQTDFPDTFRTA-VEIRHEIQERGWQKIVAF 198
Query: 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
Q RNP+H H L + G +++H L G K D+P R
Sbjct: 199 QTRNPMHRAHEELCKMAMEAVEADG-----VVIHMLLGQLKPGDIPAPVR 243
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 107/246 (43%), Gaps = 59/246 (23%)
Query: 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQW-----VHVLSEGWASPLSG 107
LIEP GG L LI D R+ K EA +LP +DL W + +L G SPL+G
Sbjct: 5 LIEPYGGTLVNLI-DPEKREALKHEALSLP-----SLDLDWQQQCELEMLMTGAYSPLTG 58
Query: 108 FMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDE--QKRRIGESTRVALVDSDDNVV 165
FM ++ + ++ +LDDGS PI L D RR GE R+AL D + ++
Sbjct: 59 FMTRAQCARV--ESAQQLDDGSF--WPSPITLTSRDRALADRRPGE--RLALRDGEGYML 112
Query: 166 AILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLE--VLEPIKYHDG 223
AIL +++K + W + G++E L P H
Sbjct: 113 AILTLSDVWKDGE--------------------------RWHLAGEVEGAALPP---HPD 143
Query: 224 LDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPI-LLL 282
R +PA+LR F +R + A+Q R P+H L+ +N LLL
Sbjct: 144 FVSLRATPAELRALFVRRGWRRIIAWQARQPMHRAQYEF-------CLKSAIENEANLLL 196
Query: 283 HP-LGG 287
HP +GG
Sbjct: 197 HPQVGG 202
>pdb|1JHD|A Chain A, Crystal Structure Of Bacterial Atp Sulfurylase From The
Riftia Pachyptila Symbiont
Length = 396
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 77 EAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVP 136
EA +LP + ++ ++ G+ SPL GFM ++ + + L DGS VP
Sbjct: 27 EAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAA--EKMTLSDGSF--FPVP 82
Query: 137 IVLAIDDEQKRRIGESTRVALVDS--DDNVVAILNDIEIYKHPKEERIA-------RTWG 187
++ + E IG++ R+AL D + N V + DIE + +E++A RT
Sbjct: 83 VLCLL--ENTDAIGDAKRIALRDPNVEGNPVLAVMDIEAIEEVSDEQMAVMTDKVYRTTD 140
Query: 188 TTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYH-DGLDRFRLSPAQLRDEFSKRNADAV 246
G+ + G + G ++VL + D D FR + ++R+E + V
Sbjct: 141 MDHIGV----KTFNSQGRVAVSGPIQVLNFSYFQADFPDTFRTA-VEIRNEIKEHGWSKV 195
Query: 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWR 299
AFQ RNP+H H L L G +++H L G K D+P R
Sbjct: 196 VAFQTRNPMHRAHEELCRMAMESLDADG-----VVVHMLLGKLKKGDIPAPVR 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,185,016
Number of Sequences: 62578
Number of extensions: 379128
Number of successful extensions: 781
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 18
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)