Query 021558
Match_columns 311
No_of_seqs 161 out of 607
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 4.5E-83 9.8E-88 626.2 27.2 245 53-311 3-247 (391)
2 PRK05537 bifunctional sulfate 100.0 1.2E-79 2.6E-84 626.8 27.3 247 53-310 1-247 (568)
3 COG2046 MET3 ATP sulfurylase ( 100.0 2.2E-78 4.7E-83 582.0 22.1 242 53-311 3-244 (397)
4 TIGR00339 sopT ATP sulphurylas 100.0 1E-77 2.3E-82 587.5 26.8 245 56-311 1-246 (383)
5 cd00517 ATPS ATP-sulfurylase. 100.0 4.6E-75 1E-79 563.6 24.9 219 81-311 1-219 (353)
6 KOG4238 Bifunctional ATP sulfu 100.0 1.3E-62 2.9E-67 473.7 15.4 246 60-309 231-481 (627)
7 PF14306 PUA_2: PUA-like domai 100.0 4.3E-57 9.4E-62 395.8 12.2 159 54-217 1-160 (160)
8 KOG0636 ATP sulfurylase (sulfa 100.0 1E-55 2.2E-60 423.7 3.8 305 1-309 1-306 (466)
9 PF01747 ATP-sulfurylase: ATP- 100.0 6.5E-30 1.4E-34 233.6 9.7 82 224-311 1-82 (215)
10 KOG0636 ATP sulfurylase (sulfa 99.9 5.7E-25 1.2E-29 212.1 -2.8 207 87-310 11-217 (466)
11 cd02169 Citrate_lyase_ligase C 97.3 0.0018 3.9E-08 62.4 10.6 72 230-310 99-172 (297)
12 cd02039 cytidylyltransferase_l 96.7 0.0039 8.3E-08 51.3 6.0 52 251-308 7-62 (143)
13 PRK13964 coaD phosphopantethei 95.1 0.061 1.3E-06 46.7 6.2 52 251-309 9-60 (140)
14 cd02163 PPAT Phosphopantethein 94.8 0.082 1.8E-06 45.8 6.3 52 251-309 7-58 (153)
15 TIGR01510 coaD_prev_kdtB pante 94.4 0.12 2.6E-06 44.8 6.5 52 251-309 7-58 (155)
16 cd02165 NMNAT Nicotinamide/nic 94.2 0.16 3.5E-06 45.2 6.9 54 251-309 7-62 (192)
17 PLN02945 nicotinamide-nucleoti 93.7 0.21 4.5E-06 46.4 7.0 60 245-309 22-89 (236)
18 TIGR00125 cyt_tran_rel cytidyl 93.5 0.22 4.8E-06 36.2 5.5 57 247-308 3-62 (66)
19 PRK00168 coaD phosphopantethei 93.3 0.34 7.4E-06 42.2 7.3 53 250-309 8-60 (159)
20 TIGR00482 nicotinate (nicotina 93.0 0.29 6.4E-06 43.7 6.6 54 251-309 5-61 (193)
21 TIGR00124 cit_ly_ligase [citra 92.9 0.29 6.3E-06 48.0 6.9 57 244-309 139-196 (332)
22 cd02167 NMNAT_NadR Nicotinamid 92.9 0.27 5.8E-06 43.1 6.0 52 251-309 7-61 (158)
23 PRK08887 nicotinic acid mononu 91.9 0.49 1.1E-05 42.0 6.5 57 245-309 3-61 (174)
24 PF01467 CTP_transf_2: Cytidyl 91.9 0.22 4.9E-06 40.9 4.1 54 251-309 5-61 (157)
25 PRK00071 nadD nicotinic acid m 90.9 0.89 1.9E-05 40.9 7.2 60 245-309 5-68 (203)
26 PRK01153 nicotinamide-nucleoti 90.9 0.69 1.5E-05 41.2 6.4 51 251-308 8-61 (174)
27 cd02164 PPAT_CoAS phosphopante 90.9 0.85 1.8E-05 39.5 6.8 58 247-310 2-66 (143)
28 cd09286 NMNAT_Eukarya Nicotina 90.4 0.95 2E-05 41.9 7.1 63 246-309 2-68 (225)
29 TIGR01526 nadR_NMN_Atrans nico 90.1 0.71 1.5E-05 44.9 6.2 52 251-309 9-63 (325)
30 PRK06973 nicotinic acid mononu 90.1 1.2 2.7E-05 41.8 7.6 60 245-309 23-84 (243)
31 PRK13671 hypothetical protein; 89.0 1.2 2.6E-05 43.3 6.8 53 246-303 2-58 (298)
32 cd02168 NMNAT_Nudix Nicotinami 89.0 1.2 2.7E-05 39.9 6.5 52 251-309 7-61 (181)
33 cd02166 NMNAT_Archaea Nicotina 88.7 1.4 3.1E-05 38.6 6.6 52 251-309 7-61 (163)
34 PRK00777 phosphopantetheine ad 87.4 2.6 5.6E-05 36.8 7.3 57 246-309 4-65 (153)
35 PRK05379 bifunctional nicotina 87.2 1.5 3.1E-05 43.0 6.3 52 251-309 14-68 (340)
36 cd02156 nt_trans nucleotidyl t 84.7 2.1 4.5E-05 34.3 5.0 48 251-305 7-57 (105)
37 TIGR01527 arch_NMN_Atrans nico 84.4 3 6.5E-05 37.0 6.3 52 251-309 7-61 (165)
38 COG1057 NadD Nicotinic acid mo 82.1 4.4 9.5E-05 37.1 6.6 54 251-309 11-67 (197)
39 cd02064 FAD_synthetase_N FAD s 81.1 5.3 0.00012 35.3 6.6 60 245-306 1-68 (180)
40 PLN02388 phosphopantetheine ad 80.1 5.9 0.00013 35.8 6.6 61 243-309 19-85 (177)
41 PRK07152 nadD putative nicotin 79.9 6.5 0.00014 38.3 7.4 59 246-309 3-65 (342)
42 smart00764 Citrate_ly_lig Citr 77.9 2.7 5.8E-05 37.8 3.7 18 248-265 3-21 (182)
43 PF02569 Pantoate_ligase: Pant 76.0 2 4.4E-05 41.5 2.5 64 229-296 5-70 (280)
44 PRK08099 bifunctional DNA-bind 75.0 11 0.00023 38.0 7.4 59 244-309 53-121 (399)
45 PF05636 HIGH_NTase1: HIGH Nuc 73.4 3.5 7.5E-05 41.5 3.5 42 246-292 3-45 (388)
46 PRK13670 hypothetical protein; 72.7 4.9 0.00011 40.4 4.4 56 245-304 2-60 (388)
47 COG3053 CitC Citrate lyase syn 71.4 18 0.00039 35.7 7.7 96 194-305 99-198 (352)
48 TIGR00018 panC pantoate--beta- 70.9 2.8 6.1E-05 40.5 2.1 39 229-267 5-45 (282)
49 PF14359 DUF4406: Domain of un 69.9 9.3 0.0002 30.8 4.7 72 206-297 1-78 (92)
50 cd02171 G3P_Cytidylyltransfera 68.1 16 0.00034 30.2 5.8 56 244-306 2-62 (129)
51 COG1323 Predicted nucleotidylt 67.3 7.4 0.00016 38.9 4.3 56 242-302 29-89 (358)
52 PLN02660 pantoate--beta-alanin 66.8 4 8.7E-05 39.5 2.3 38 229-266 4-43 (284)
53 PRK01170 phosphopantetheine ad 66.6 12 0.00026 36.9 5.6 58 246-310 3-64 (322)
54 COG0669 CoaD Phosphopantethein 65.4 17 0.00036 32.6 5.7 52 251-309 10-61 (159)
55 cd02170 cytidylyltransferase c 63.2 20 0.00043 29.8 5.6 55 245-306 3-62 (136)
56 PF09142 TruB_C: tRNA Pseudour 62.2 8.1 0.00018 28.4 2.7 33 139-171 4-45 (56)
57 PRK13477 bifunctional pantoate 58.5 21 0.00045 37.4 5.9 37 229-266 5-42 (512)
58 cd02790 MopB_CT_Formate-Dh_H F 57.7 26 0.00057 27.8 5.2 36 139-174 37-74 (116)
59 COG0414 PanC Panthothenate syn 56.9 25 0.00054 34.2 5.6 38 229-266 5-44 (285)
60 cd02173 ECT CTP:phosphoethanol 56.7 30 0.00064 30.2 5.7 53 245-305 3-64 (152)
61 cd02781 MopB_CT_Acetylene-hydr 56.4 25 0.00055 28.7 5.1 35 139-173 35-71 (130)
62 cd00508 MopB_CT_Fdh-Nap-like T 55.2 25 0.00055 27.9 4.8 35 139-173 37-73 (120)
63 COG1056 NadR Nicotinamide mono 54.9 24 0.00052 31.9 4.9 49 251-308 11-64 (172)
64 PF01568 Molydop_binding: Moly 54.8 16 0.00035 28.8 3.5 34 139-172 32-67 (110)
65 cd02792 MopB_CT_Formate-Dh-Na- 54.5 35 0.00076 27.4 5.5 36 139-174 37-74 (122)
66 cd02786 MopB_CT_3 The MopB_CT_ 54.0 35 0.00077 27.2 5.4 36 139-174 33-70 (116)
67 cd00560 PanC Pantoate-beta-ala 53.9 29 0.00062 33.5 5.6 39 229-267 5-45 (277)
68 cd02785 MopB_CT_4 The MopB_CT_ 53.8 34 0.00074 27.9 5.4 37 139-175 34-72 (124)
69 COG0231 Efp Translation elonga 53.1 10 0.00023 32.5 2.3 66 80-168 61-126 (131)
70 TIGR02199 rfaE_dom_II rfaE bif 52.8 46 0.001 28.4 6.2 63 239-306 7-74 (144)
71 cd02779 MopB_CT_Arsenite-Ox Th 52.7 35 0.00075 27.6 5.2 36 139-174 35-72 (115)
72 cd02787 MopB_CT_ydeP The MopB_ 52.6 26 0.00057 28.1 4.5 35 138-172 32-68 (112)
73 cd02172 RfaE_N N-terminal doma 52.0 44 0.00095 28.6 5.9 60 242-306 3-65 (144)
74 COG1500 Predicted exosome subu 51.9 1.4 3E-05 41.4 -3.5 46 139-191 21-72 (234)
75 COG1019 Predicted nucleotidylt 51.9 32 0.0007 30.7 5.1 56 246-308 7-68 (158)
76 TIGR01518 g3p_cytidyltrns glyc 51.7 18 0.00039 29.9 3.4 55 247-306 2-59 (125)
77 cd02788 MopB_CT_NDH-1_NuoG2-N7 50.4 33 0.00072 27.0 4.7 34 139-172 31-66 (96)
78 PRK13793 nicotinamide-nucleoti 49.3 17 0.00036 33.5 3.0 47 252-307 13-64 (196)
79 cd02789 MopB_CT_FmdC-FwdD The 49.0 37 0.0008 27.4 4.8 35 138-172 32-68 (106)
80 cd02780 MopB_CT_Tetrathionate_ 47.4 39 0.00085 28.4 4.9 35 139-173 32-68 (143)
81 cd02778 MopB_CT_Thiosulfate-R- 46.9 53 0.0012 26.4 5.5 35 139-173 32-68 (123)
82 cd02791 MopB_CT_Nitrate-R-NapA 46.8 41 0.00089 27.0 4.8 35 139-173 37-73 (122)
83 TIGR00083 ribF riboflavin kina 46.4 59 0.0013 31.4 6.5 29 247-275 2-30 (288)
84 PRK00380 panC pantoate--beta-a 45.0 30 0.00065 33.3 4.2 39 229-267 5-45 (281)
85 PRK13671 hypothetical protein; 44.7 37 0.00081 33.1 4.9 74 208-292 2-78 (298)
86 cd02783 MopB_CT_2 The MopB_CT_ 44.2 46 0.001 28.7 5.0 34 139-172 34-69 (156)
87 cd02794 MopB_CT_DmsA-EC The Mo 44.1 39 0.00084 27.5 4.2 35 139-173 32-68 (121)
88 PF08218 Citrate_ly_lig: Citra 43.3 30 0.00065 31.6 3.7 16 250-265 6-21 (182)
89 PF06574 FAD_syn: FAD syntheta 42.7 26 0.00057 30.6 3.2 31 244-274 6-36 (157)
90 cd02782 MopB_CT_1 The MopB_CT_ 42.5 65 0.0014 26.3 5.4 37 139-175 35-73 (129)
91 cd02775 MopB_CT Molybdopterin- 40.3 49 0.0011 25.4 4.1 34 139-172 25-60 (101)
92 cd02784 MopB_CT_PHLH The MopB_ 37.3 51 0.0011 28.3 4.1 35 139-173 40-76 (137)
93 cd02174 CCT CTP:phosphocholine 37.1 1.1E+02 0.0024 26.6 6.2 56 245-306 4-65 (150)
94 cd02777 MopB_CT_DMSOR-like The 36.1 57 0.0012 26.7 4.1 35 139-173 36-72 (127)
95 PF07157 DNA_circ_N: DNA circu 34.5 38 0.00082 27.6 2.7 21 267-289 69-89 (93)
96 cd04470 S1_EF-P_repeat_1 S1_EF 33.6 24 0.00051 26.2 1.3 21 147-167 38-58 (61)
97 cd02793 MopB_CT_DMSOR-BSOR-TMA 33.4 64 0.0014 26.7 4.0 34 139-172 35-70 (129)
98 smart00359 PUA Putative RNA-bi 33.2 51 0.0011 24.2 3.0 21 149-169 31-51 (77)
99 PRK04980 hypothetical protein; 33.0 46 0.00099 27.7 2.9 30 147-176 30-60 (102)
100 cd04463 S1_EF_like S1_EF_like: 32.9 23 0.00049 25.2 1.0 23 145-167 33-55 (55)
101 PF01472 PUA: PUA domain; Int 32.8 45 0.00098 25.2 2.7 32 135-170 21-52 (74)
102 PRK07562 ribonucleotide-diphos 32.4 77 0.0017 36.7 5.5 76 102-197 377-453 (1220)
103 cd02776 MopB_CT_Nitrate-R-NarG 32.0 1.1E+02 0.0024 26.1 5.3 35 139-173 33-69 (141)
104 COG1370 Prefoldin, molecular c 31.9 45 0.00098 29.7 2.9 29 136-168 102-130 (155)
105 KOG3199 Nicotinamide mononucle 31.9 75 0.0016 30.0 4.4 63 246-308 11-75 (234)
106 COG4118 Phd Antitoxin of toxin 31.8 62 0.0013 25.8 3.4 26 144-170 16-41 (84)
107 PRK13760 putative RNA-associat 28.0 36 0.00078 32.1 1.7 64 138-210 20-89 (231)
108 PRK08395 fumarate hydratase; P 28.0 60 0.0013 29.1 3.1 23 136-158 2-24 (162)
109 cd04498 hPOT1_OB2 hPOT1_OB2: A 27.8 65 0.0014 27.5 3.1 27 133-159 60-87 (123)
110 PF10753 DUF2566: Protein of u 27.1 9.9 0.00021 28.3 -1.7 12 128-139 39-50 (55)
111 PRK05627 bifunctional riboflav 26.6 1.9E+02 0.0042 28.1 6.5 29 245-273 15-43 (305)
112 cd06541 ASCH ASC-1 homology or 26.3 1.1E+02 0.0024 24.7 4.1 41 136-177 18-58 (105)
113 PRK14578 elongation factor P; 25.8 41 0.00089 30.7 1.6 64 81-167 62-125 (187)
114 KOG3605 Beta amyloid precursor 25.8 84 0.0018 34.2 4.1 144 89-263 599-750 (829)
115 cd03016 PRX_1cys Peroxiredoxin 24.6 2.8E+02 0.006 24.8 6.8 39 133-171 88-136 (203)
116 cd03015 PRX_Typ2cys Peroxiredo 24.4 2.8E+02 0.0061 23.7 6.6 46 133-178 93-146 (173)
117 COG0365 Acs Acyl-coenzyme A sy 24.1 1.6E+02 0.0035 30.9 5.8 106 150-265 347-479 (528)
118 PF00571 CBS: CBS domain CBS d 23.3 75 0.0016 21.6 2.3 23 152-174 30-52 (57)
119 PRK06842 fumarate hydratase; P 22.7 89 0.0019 28.6 3.2 23 136-158 4-26 (185)
120 PF12500 TRSP: TRSP domain C t 22.6 82 0.0018 27.9 2.9 30 226-257 67-98 (155)
121 TIGR00451 unchar_dom_2 unchara 22.4 1.1E+02 0.0025 24.6 3.5 30 136-169 52-82 (107)
122 PLN02406 ethanolamine-phosphat 22.0 3.1E+02 0.0068 28.1 7.2 60 239-306 47-114 (418)
123 PRK08228 L(+)-tartrate dehydra 21.0 94 0.002 28.9 3.0 24 135-158 4-27 (204)
124 PTZ00225 60S ribosomal protein 20.6 2.3E+02 0.0051 26.2 5.6 98 50-159 47-156 (214)
125 PRK05912 tyrosyl-tRNA syntheta 20.1 5.8E+02 0.013 25.8 8.7 43 231-274 22-65 (408)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=4.5e-83 Score=626.18 Aligned_cols=245 Identities=33% Similarity=0.502 Sum_probs=235.9
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 021558 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (311)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~ 132 (311)
++.||||+|++|+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 3 ~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~-- 78 (391)
T PRK04149 3 LIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV-- 78 (391)
T ss_pred CCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC--
Confidence 568999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 021558 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (311)
|||||||+|+++++++|++|++|+|++ +|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|
T Consensus 79 wpiPi~L~v~~e~~~~l~~g~~vaL~~-~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~i 156 (391)
T PRK04149 79 WSIPITLDVSEEDAASLKEGDEVALVY-KGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGPV 156 (391)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEee-CCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeEE
Confidence 899999999999999999999999995 9999999999999999999999999999999999999976 68999999999
Q ss_pred EEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 021558 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (311)
Q Consensus 213 ~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~d 292 (311)
++++++.+ ++|++||+||+|+|+.|+++||++|+|||||||+|||||+||+ +|+|.+ ++||||||+|+||+|
T Consensus 157 ~~l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~----~a~e~~---d~lll~plvG~~k~~ 228 (391)
T PRK04149 157 TLLNRKFH-EPFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQK----CALEIV---DGLLLNPLVGETKSG 228 (391)
T ss_pred EEeecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHH----HHHHhc---CeEEEecCcCCCCCC
Confidence 99998775 5799999999999999999999999999999999999999996 678874 799999999999999
Q ss_pred CCChHHHHHHHHHHHHhhC
Q 021558 293 DVPLSWRMKQHEKVLRLTF 311 (311)
Q Consensus 293 Dvp~~vR~r~ye~ll~ny~ 311 (311)
|+|+++|||||+++++|||
T Consensus 229 di~~~~r~~~~~~~~~~y~ 247 (391)
T PRK04149 229 DIPAEVRMEAYEALLKNYY 247 (391)
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999997
No 2
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=1.2e-79 Score=626.78 Aligned_cols=247 Identities=33% Similarity=0.506 Sum_probs=236.1
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 021558 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (311)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~ 132 (311)
+|+||||+|+||+|+++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 489999999999999999999999999999999999999999999999999999999999999999 6999999998
Q ss_pred cceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 021558 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (311)
|||||||+|+++.+++|++|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++.+.|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 89999999999999999999999999989999999999999999999999999999999999999988655999999999
Q ss_pred EEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 021558 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (311)
Q Consensus 213 ~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~d 292 (311)
++++++.|+ +|++||+||+|+|+.|+++||++|+|||||||+|||||+||| +|+|.. +++||||||||++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~----~a~~~~--d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTK----RAAREV--GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHH----HHHHhc--CCeEEEecCCCCCCCC
Confidence 999988887 599999999999999999999999999999999999999997 556652 3489999999999999
Q ss_pred CCChHHHHHHHHHHHHhh
Q 021558 293 DVPLSWRMKQHEKVLRLT 310 (311)
Q Consensus 293 Dvp~~vR~r~ye~ll~ny 310 (311)
|||+++|||||+++++||
T Consensus 230 d~~~~~r~~~~~~~~~~~ 247 (568)
T PRK05537 230 DIDHFTRVRCYEALLDKY 247 (568)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999999995
No 3
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-78 Score=582.01 Aligned_cols=242 Identities=30% Similarity=0.519 Sum_probs=232.2
Q ss_pred ccCCCCCceeecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 021558 53 LIEPDGGKLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (311)
Q Consensus 53 li~PhGg~Lv~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~ 132 (311)
+..||||+||++++.+.+ ..+.+..+|+|+|+.+.++||++|++|+||||+|||||+||+||+ ++|||+||++
T Consensus 3 ~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~-- 75 (397)
T COG2046 3 LSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL-- 75 (397)
T ss_pred CCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe--
Confidence 568999999999998766 567889999999999999999999999999999999999999999 7999999999
Q ss_pred cceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 021558 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (311)
|||||+|+|+++++..+++||.|.|.+ +|.++|+|+|+|+|++||+.+|.+||+|+|+.||||+.++ .+|+++|||+|
T Consensus 76 w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~i 153 (397)
T COG2046 76 WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGKI 153 (397)
T ss_pred eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeeeE
Confidence 899999999999999999999999998 9999999999999999999999999999999999999866 79999999999
Q ss_pred EEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 021558 213 EVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (311)
Q Consensus 213 ~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~d 292 (311)
++++.|.++ +|++|+++|+|+|+.|+++||++|||||||||+||||||||| +|++.. |+||||||||.||+|
T Consensus 154 ~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K----~Al~~v---dgllv~plVG~tk~g 225 (397)
T COG2046 154 ELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQK----RALEKV---DGLLVHPLVGATKPG 225 (397)
T ss_pred EEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHH----HHHHhc---CcEEEEeeeccccCC
Confidence 999988887 899999999999999999999999999999999999999997 788884 789999999999999
Q ss_pred CCChHHHHHHHHHHHHhhC
Q 021558 293 DVPLSWRMKQHEKVLRLTF 311 (311)
Q Consensus 293 Dvp~~vR~r~ye~ll~ny~ 311 (311)
|+|+++||+|||+++++|+
T Consensus 226 D~~~e~rm~~ye~l~~~Yy 244 (397)
T COG2046 226 DIPDEVRMEYYEALLKHYY 244 (397)
T ss_pred CchHHHHHHHHHHHHHhCC
Confidence 9999999999999999996
No 4
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=1e-77 Score=587.47 Aligned_cols=245 Identities=40% Similarity=0.603 Sum_probs=232.9
Q ss_pred CCCCceeecccCch-hHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecc
Q 021558 56 PDGGKLTELIVDKS-LRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMS 134 (311)
Q Consensus 56 PhGg~Lv~l~v~~~-~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~p 134 (311)
||||+|+||+|+++ ++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999987 6779999999999999999999999999999999999999999999999 6999999998 89
Q ss_pred eeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 021558 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (311)
Q Consensus 135 iPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (311)
|||||+|+++++++|++|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999977999999999999999999999999999999999999976 8999999999999
Q ss_pred eccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 021558 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (311)
Q Consensus 215 l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDv 294 (311)
++++.|+ +|++||+||+|+|+.|+++||++|||||||||+||||++|++ +|++.. ..|+|||||++|++|+||+
T Consensus 156 l~~~~~~-~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~----~a~e~l-~~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKFY-DFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTK----RAARSL-PNAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCCC-CchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHH----HHHHHc-CCCeEEEEeCCCCCCCCCC
Confidence 9988885 699999999999999999999999999999999999999997 455641 1378999999999999999
Q ss_pred ChHHHHHHHHHHHHhhC
Q 021558 295 PLSWRMKQHEKVLRLTF 311 (311)
Q Consensus 295 p~~vR~r~ye~ll~ny~ 311 (311)
|+++|++||+++++||+
T Consensus 230 ~~~~R~~~~~~~~~~~~ 246 (383)
T TIGR00339 230 PAEVRMRAYEVLKEGYP 246 (383)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 99999999999999995
No 5
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=4.6e-75 Score=563.57 Aligned_cols=219 Identities=44% Similarity=0.698 Sum_probs=208.8
Q ss_pred CCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCC
Q 021558 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (311)
Q Consensus 81 lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~ 160 (311)
||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++ |||||||+|++|++++|++|++|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 69999999999999999999999999999999999999 6999999988 899999999999999999999999999
Q ss_pred CCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCccccCCHHHHHHHHHh
Q 021558 161 DDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSK 240 (311)
Q Consensus 161 eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~~ 240 (311)
+|+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999866 68999999999999988887 699999999999999999
Q ss_pred cCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHhhC
Q 021558 241 RNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRLTF 311 (311)
Q Consensus 241 ~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~ny~ 311 (311)
+||++|+|||||||+|||||+||| +|++... +++||||||+|+||+||+|+++|||||+++++||+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~----~a~~~~~-~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~~y~ 219 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMK----RAAEKLL-NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLEEYY 219 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHH----HHHHHcC-CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999997 5666521 37899999999999999999999999999999996
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-62 Score=473.67 Aligned_cols=246 Identities=59% Similarity=1.023 Sum_probs=236.0
Q ss_pred ceeecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCC-----Ceeecc
Q 021558 60 KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDG-----SVVNMS 134 (311)
Q Consensus 60 ~Lv~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG-----~~~~~p 134 (311)
...+|+|+++....++++|++||++.|++.+++|+++|++||.+||+|||+|.+|.+++||+++ -|| -..|+|
T Consensus 231 ~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~l--ld~khaf~g~in~s 308 (627)
T KOG4238|consen 231 DVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDTL--LDGKHAFDGVINMS 308 (627)
T ss_pred HHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhhh--hccccccccccccc
Confidence 3578899999999999999999999999999999999999999999999999999999998754 455 456899
Q ss_pred eeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEE
Q 021558 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEV 214 (311)
Q Consensus 135 iPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~ 214 (311)
|||||+++.|++++|....++||.+ +|+.+|||...|+|++.|+++|.+.|||+++.||+|++.+ ++|+|+|||++.+
T Consensus 309 ipivl~~s~e~k~~leg~t~~al~y-~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~vm-esg~wl~ggdl~v 386 (627)
T KOG4238|consen 309 IPIVLPVSAEDKTRLEGCTKFALAY-GGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMVM-ESGDWLVGGDLQV 386 (627)
T ss_pred ccEEEecchhhhhccchhHHHHhhc-CCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHHH-hcCCeeeccchhh
Confidence 9999999999999999999999998 9999999999999999999999999999999999999854 8999999999999
Q ss_pred eccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCC
Q 021558 215 LEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDV 294 (311)
Q Consensus 215 l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDv 294 (311)
++.+.|+|++++||+||.|+|+.|++++++.|+|||.|||+|+||..||++|++.+||.||+++.||||||+||||.||+
T Consensus 387 l~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddv 466 (627)
T KOG4238|consen 387 LEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDV 466 (627)
T ss_pred heeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 021558 295 PLSWRMKQHEKVLRL 309 (311)
Q Consensus 295 p~~vR~r~ye~ll~n 309 (311)
|.++||++|+++|+.
T Consensus 467 pl~~rmkqh~avl~e 481 (627)
T KOG4238|consen 467 PLDWRMKQHAAVLEE 481 (627)
T ss_pred cchhhhHHHHHHHHh
Confidence 999999999999974
No 7
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=4.3e-57 Score=395.79 Aligned_cols=159 Identities=40% Similarity=0.681 Sum_probs=139.3
Q ss_pred cCCCCC-ceeecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeee
Q 021558 54 IEPDGG-KLTELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVN 132 (311)
Q Consensus 54 i~PhGg-~Lv~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~ 132 (311)
|.|||| +||||+++++++++++++|.+||+|.||++++||||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred cceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE
Q 021558 133 MSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL 212 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v 212 (311)
|||||||+|+++++++++.|++|+|+|++|+++|+|+|+|+|++||+++|++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 89999999999999999999999999977999999999999999999999999999999999999977 89999999999
Q ss_pred EEecc
Q 021558 213 EVLEP 217 (311)
Q Consensus 213 ~~l~~ 217 (311)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99874
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-55 Score=423.68 Aligned_cols=305 Identities=45% Similarity=0.569 Sum_probs=289.1
Q ss_pred CccccccccCCCCCCCCCccCCcccccCCCCCCCCCcCCCccccccccccCCccCCCCCceeecccCchhHHHHHHHhcc
Q 021558 1 MATMSTLFAKTPLPSRSLSKSNISHFAPPLTSLSFKQKTTAPHFKLRSIRAGLIEPDGGKLTELIVDKSLRDVRKREAAT 80 (311)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~PhGg~Lv~l~v~~~~~~~l~~ea~~ 80 (311)
||||++++.+|||.+.++.+..+ +.+..-+++..+.++ ..++++..+++|.|.||+|++++|++.++...++|+++
T Consensus 1 ~~ss~~~~~ntp~~~~~l~~~l~--~~~~~~~l~~~~~s~--~~~~lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d 76 (466)
T KOG0636|consen 1 MASSDILVWNTPFQSCPLELILN--SSPLTGFLSENSYSS--VVRRLSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAED 76 (466)
T ss_pred CCccceeecCCccccCchhhhcc--CCCCcceeccccchh--heeeeeccceeeccCCchHHHhhccccchhhhhhhhcc
Confidence 89999999999999999988877 444444455555443 34789999999999999999999999999999999999
Q ss_pred CCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCC
Q 021558 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (311)
Q Consensus 81 lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~ 160 (311)
+|.|.|+..|++|..++.+||.|||.|||++.+|.+.+||+..||.||.+.||++||+|+++++++..++...+|+|++.
T Consensus 77 ~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~ 156 (466)
T KOG0636|consen 77 DPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQS 156 (466)
T ss_pred CCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeecCceEEEeeccEEEecCcccccccccceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCcccCCCHH-HHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCccccCCHHHHHHHHH
Q 021558 161 DDNVVAILNDIEIYKHPKE-ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFS 239 (311)
Q Consensus 161 eG~~vAiL~V~eiy~~Dk~-~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~ 239 (311)
+|.++|++...++|+|.|+ +||++.|||+.+.||.|.++....++|+++|+++++.+.+|+|+.+.|+|.|.++|.++.
T Consensus 157 d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~d~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~ 236 (466)
T KOG0636|consen 157 DGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDIDHLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGD 236 (466)
T ss_pred CCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCCcceeeeEEEEEEeeecCCchhhhcCChHHHhhhcc
Confidence 9999999999999999999 999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 240 KRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 240 ~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
++++..+++||.|||.|.+|..+|.+++|..++++|+++.+++|||.|.||.+|||..+||++++..+|.
T Consensus 237 r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~ED 306 (466)
T KOG0636|consen 237 REAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDED 306 (466)
T ss_pred hhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999887764
No 9
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=99.96 E-value=6.5e-30 Score=233.65 Aligned_cols=82 Identities=43% Similarity=0.671 Sum_probs=69.7
Q ss_pred CccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHH
Q 021558 224 LDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQH 303 (311)
Q Consensus 224 f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~y 303 (311)
|++||+||+|+|+.|+++||++|||||||||+|||||+|++ +|+|.. .++||||||||++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~----~a~e~~--~~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMR----RALEKA--GDGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHH----HHHHHH--TSEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHH----HHHHHh--cCcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 67999999999999999999999999999999999999997 566652 279999999999999999999999999
Q ss_pred HHHHHhhC
Q 021558 304 EKVLRLTF 311 (311)
Q Consensus 304 e~ll~ny~ 311 (311)
+++++|||
T Consensus 75 ~~~~~~y~ 82 (215)
T PF01747_consen 75 EALIDNYF 82 (215)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhC
Confidence 99999986
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.7e-25 Score=212.09 Aligned_cols=207 Identities=21% Similarity=0.193 Sum_probs=187.4
Q ss_pred ChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEE
Q 021558 87 TKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVA 166 (311)
Q Consensus 87 ~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vA 166 (311)
++.+.|+++++.+ ++|++||+++.+|.+|. .||++|.. |.+|+.+++.+-.+..++.+.+.++-- +...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~~-d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEAE-DDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhhc-cCCcee
Confidence 8899999999999 99999999999999996 58999999 799999999999888999999999863 667999
Q ss_pred EEEeCcccCCCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCccccCCHHHHHHHHHhcCCCce
Q 021558 167 ILNDIEIYKHPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAV 246 (311)
Q Consensus 167 iL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~V 246 (311)
+.+|...|.+.+.++++.+|+ .++.||..-++++=.+.++++|.++-++.|.+. ++++.+.+|.+.+..|+-..|+.+
T Consensus 82 l~~vdl~w~hv~segwasplr-Gfmre~e~lqtlhfn~~~l~~GS~vnmslPivl-aidd~~K~~ig~s~~v~l~~~d~~ 159 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLR-GFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL-AIDDDQKTPIGLSLEVQLVQSDGN 159 (466)
T ss_pred eeeeeeEEeeecchhhhcccc-CcccchhHHhheeccceeecCceEEEeeccEEE-ecCcccccccccceeEEEecCCCC
Confidence 999999999999999999997 478999999888888999999999999944433 688999999999999999999999
Q ss_pred EEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHhh
Q 021558 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRLT 310 (311)
Q Consensus 247 vAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~ny 310 (311)
++||+|||+||+|.++ |.|+|.+.| +-.++||+||.||++|+++.+|++.|+..+..|
T Consensus 160 ~i~~lrn~~~~aH~e~---t~R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~rY 217 (466)
T KOG0636|consen 160 PIAILRNPMHRAHREL---TVRAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPIRY 217 (466)
T ss_pred eeeeecCHHhhhchHH---HHHHHHHhC---CccccccccceecCCCCcceeeeEEEEEEeeec
Confidence 9999999999999999 346788886 779999999999999999999999887766554
No 11
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.32 E-value=0.0018 Score=62.42 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=53.0
Q ss_pred CHHHHHHHHH-hcCCCceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHH
Q 021558 230 SPAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVL 307 (311)
Q Consensus 230 tP~e~R~~f~-~~Gw~~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll 307 (311)
...-+++..+ +++.++|+|.. +-||+|+||..+.+ .|++.- .-+.+++.| .+..-+|.+.|++..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~FDPiH~GHl~ii~----~a~~~~-d~~~V~i~~----~~~~~~~~e~R~~ml~~ai 169 (297)
T cd02169 99 IEDYLKNLPKPDQPGKKIAAIVMNANPFTLGHRYLVE----KAAAEN-DWVHLFVVS----EDKSLFSFADRFKLVKKGT 169 (297)
T ss_pred HHHHHHHHHhhccCCCceEEEEecCCCCchHHHHHHH----HHHhhC-CeEEEEEEc----CCCCCCCHHHHHHHHHHHh
Confidence 4455556666 78899999999 89999999999986 456652 112333333 3677899999999999988
Q ss_pred Hhh
Q 021558 308 RLT 310 (311)
Q Consensus 308 ~ny 310 (311)
+++
T Consensus 170 ~~~ 172 (297)
T cd02169 170 KHL 172 (297)
T ss_pred CCC
Confidence 753
No 12
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=96.72 E-value=0.0039 Score=51.33 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=41.3
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----CCCCChHHHHHHHHHHHH
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----ADDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK----~dDvp~~vR~r~ye~ll~ 308 (311)
+-||+|+||.+|++. |.+.+ .+.++|.|.....+ ...++++.|++..+++.+
T Consensus 7 ~Fdp~H~GH~~ll~~----a~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (143)
T cd02039 7 RFEPFHLGHLKLIKE----ALEEA--LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK 62 (143)
T ss_pred ccCCcCHHHHHHHHH----HHHHc--CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc
Confidence 899999999999874 45542 25788888777654 389999999999998873
No 13
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=95.08 E-value=0.061 Score=46.66 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=42.6
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+.+ +|.+.. +-+++-|..-+.|..-++.+.|++-.+..+++
T Consensus 9 SFDPih~GHl~ii~----~A~~~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~~ 60 (140)
T PRK13964 9 SFDPFHKGHLNILK----KALKLF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLKD 60 (140)
T ss_pred eeCCCCHHHHHHHH----HHHHhC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHcC
Confidence 89999999999986 455552 56777787777788889999999999888764
No 14
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=94.78 E-value=0.082 Score=45.84 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=40.4
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+.+ .|.+.. +-+++-|..-+.|..-++.+-|++-.+..+++
T Consensus 7 sFdP~H~GHl~l~~----~a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~ 58 (153)
T cd02163 7 SFDPITNGHLDIIE----RASKLF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH 58 (153)
T ss_pred ccCCCCHHHHHHHH----HHHHHC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 78999999999986 455652 56777776556677789999999988887643
No 15
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=94.45 E-value=0.12 Score=44.83 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=41.4
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+.+ .|.+.. +-|++-|..-+.|...++.+-|++-.+..+++
T Consensus 7 sFdP~H~GHl~l~~----~a~~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~ 58 (155)
T TIGR01510 7 SFDPVTNGHLDIIK----RAAALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH 58 (155)
T ss_pred ecCCCcHHHHHHHH----HHHHhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 78999999999976 455653 66777777666677889999999988887754
No 16
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=94.16 E-value=0.16 Score=45.19 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=40.0
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C-CCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K-ADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t-K-~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|++.. ..+-+++-|-.... | ..-.+.+.|++-.+.+++.
T Consensus 7 sFdP~H~GH~~~~~----~a~~~~-~~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~~ 62 (192)
T cd02165 7 SFDPPHLGHLAIAE----EALEEL-GLDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIED 62 (192)
T ss_pred CCCCCCHHHHHHHH----HHHHHc-CCCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 78999999999986 455542 12567777765554 3 3889999999999888763
No 17
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=93.72 E-value=0.21 Score=46.41 Aligned_cols=60 Identities=17% Similarity=0.101 Sum_probs=42.1
Q ss_pred ceEEEe--eCCCCcchHHHHHHHHHHHHHHhcCCCCc-----EEEecc-cCCCCCCCCChHHHHHHHHHHHHh
Q 021558 245 AVFAFQ--LRNPVHNGHALLMTDTRRRLLEMGYQNPI-----LLLHPL-GGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 245 ~VvAFQ--TRNPlHRaHe~L~k~~~~~ale~~~~~~~-----LllhPL-vG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
+||++. |-||+|.||..+.+.|++ +++. +. +++.|. ..+.|++-++.+.|++-.+..+++
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~-~l~~----d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~ 89 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARD-ALMS----EGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED 89 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHH-HHhh----cCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC
Confidence 477777 899999999999875533 3343 33 356665 233567889999999988876654
No 18
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=93.47 E-value=0.22 Score=36.16 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=36.3
Q ss_pred EEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEec--ccCCCCC-CCCChHHHHHHHHHHHH
Q 021558 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP--LGGYTKA-DDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 247 vAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhP--LvG~tK~-dDvp~~vR~r~ye~ll~ 308 (311)
+.+=+-||+|.||.++.+ .|.+.+. .-.+++.+ .....|. .=.+.+.|.+..+.+..
T Consensus 3 ~~~G~Fdp~H~GH~~~l~----~a~~~~~-~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 3 IFVGTFDPFHLGHLDLLE----RAKELFD-ELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKY 62 (66)
T ss_pred EEcCccCCCCHHHHHHHH----HHHHhCC-EEEEEECchHhccccCCCCCCCHHHHHHHHHHhcc
Confidence 344488999999999986 4555531 11222222 3344444 56899999998887654
No 19
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=93.35 E-value=0.34 Score=42.24 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=40.3
Q ss_pred eeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 250 QLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 250 QTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
=|-||+|.||..+.+ .|.+.. +-|++-|..-+.|...++.+-|++-.+..++.
T Consensus 8 GsFdP~H~GHl~~~~----~a~~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~ 60 (159)
T PRK00168 8 GSFDPITNGHLDIIE----RASRLF---DEVIVAVAINPSKKPLFSLEERVELIREATAH 60 (159)
T ss_pred eecCCCCHHHHHHHH----HHHHHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 389999999999875 466663 56766554445577789999999988886643
No 20
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=92.99 E-value=0.29 Score=43.71 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-CC--CCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-KA--DDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t-K~--dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+.+ .|++.. ..+.+++.|-.... |. .-++.+.|++..+..+++
T Consensus 5 sFdP~H~GHl~l~~----~a~~~~-~~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~ 61 (193)
T TIGR00482 5 SFDPIHYGHLLLAE----EALDHL-DLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED 61 (193)
T ss_pred cCCccCHHHHHHHH----HHHHHc-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 67999999999986 445542 12457777765543 43 448999999999887765
No 21
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=92.90 E-value=0.29 Score=47.99 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=43.4
Q ss_pred CceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 244 DAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 244 ~~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
++|.+|- +.||+|.||.+|.+ .|++. + +.++..++. .+..-++.+.|++-.+..+++
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~----~A~~~---~-d~~~v~v~~-~~~~~f~~~~R~~~v~~~~~~ 196 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIE----QAARQ---C-DWLHLFVVK-EDASLFSYDERFALVKQGIQD 196 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHH----HHHHH---C-CEEEEEEEe-CCCCCCCHHHHHHHHHHHhcC
Confidence 5787777 99999999999986 45565 2 455555555 456699999999988887765
No 22
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=92.87 E-value=0.27 Score=43.07 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=38.1
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC---CCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT---KADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t---K~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|++. ++-|+|.|--... |..-++.+-|++-.+..+++
T Consensus 7 ~F~P~H~GHl~li~----~a~~~---~d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~ 61 (158)
T cd02167 7 KFAPLHTGHVYLIY----KALSQ---VDELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD 61 (158)
T ss_pred ccCCCCHHHHHHHH----HHHHH---CCEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC
Confidence 67999999999986 45665 3667776643332 23468999999998888764
No 23
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=91.91 E-value=0.49 Score=41.98 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=41.1
Q ss_pred ceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHh
Q 021558 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 245 ~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG-~tK~dDvp~~vR~r~ye~ll~n 309 (311)
+|.-|- |-||+|.||..+.+. + . + -+-+++.|-.. +.+..-++.+.|++-.+..+++
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~----~-~-~--~d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~ 61 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIES----L-S-H--FDLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD 61 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHH----h-h-c--CCEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc
Confidence 355555 899999999998652 2 2 2 25677777662 3344778999999999888875
No 24
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=91.90 E-value=0.22 Score=40.90 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=33.8
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC---CCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK---ADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK---~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|.+.+.. +-+++.|-..... ..=++.+-|++-.+.++..
T Consensus 5 sFdP~H~GH~~~l~----~a~~~~~~-~~vi~v~~~~~~~k~~~~~~~~~~R~~ml~~~~~~ 61 (157)
T PF01467_consen 5 SFDPPHNGHLNLLR----EARELFDE-DLVIVVPSDNSPHKDKKPIFSFEERLEMLRAAFKD 61 (157)
T ss_dssp --TT--HHHHHHHH----HHHHHSSE-SEEEEEEEEHHCHSTTSSSSTHHHHHHHHHHHHTT
T ss_pred EcCcccHHHHHHHH----HHHHhccc-cccccccccccccccccccCcHHHHHHHHHHHHhh
Confidence 67999999999986 56666411 1245555444432 2468999999999888764
No 25
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=90.92 E-value=0.89 Score=40.89 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=40.5
Q ss_pred ceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CCC--CCCChHHHHHHHHHHHHh
Q 021558 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TKA--DDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 245 ~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~-tK~--dDvp~~vR~r~ye~ll~n 309 (311)
+|.-|- +-||+|.||..|.+. |++.. .-+-+++.|--.. .|. .-++.+.|++-.+.++++
T Consensus 5 ~i~i~gGsFdP~H~GH~~l~~~----a~~~~-~~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~ 68 (203)
T PRK00071 5 RIGLFGGTFDPPHYGHLAIAEE----AAERL-GLDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD 68 (203)
T ss_pred EEEEEeeCCCccCHHHHHHHHH----HHHHc-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 455565 899999999999864 44431 1134555554322 232 679999999999988775
No 26
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=90.89 E-value=0.69 Score=41.25 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=36.4
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHH
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG---~tK~dDvp~~vR~r~ye~ll~ 308 (311)
+-||+|.||..+++ .|++. ++-|+|.+-.+ .++...++++.|++-.+..+.
T Consensus 8 ~F~P~H~GHl~~i~----~a~~~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~ 61 (174)
T PRK01153 8 RFQPFHKGHLEVIK----WILEE---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALE 61 (174)
T ss_pred ccCCCCHHHHHHHH----HHHHh---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 67999999999986 45664 35566543222 235567899999999988875
No 27
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=90.88 E-value=0.85 Score=39.50 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEE----ecccCCCC-CCC-CChHHHHHHHHHHHHhh
Q 021558 247 FAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLGGYTK-ADD-VPLSWRMKQHEKVLRLT 310 (311)
Q Consensus 247 vAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~Lll----hPLvG~tK-~dD-vp~~vR~r~ye~ll~ny 310 (311)
|+|- |-||+|.||..|.+. |++.+. +-+.+ .++...++ +.- .+.+.|++..+.+++.+
T Consensus 2 v~~GGtFD~lH~GH~~Ll~~----a~~~~~--d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~ 66 (143)
T cd02164 2 VAVGGTFDRLHDGHKILLSV----AFLLAG--EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDL 66 (143)
T ss_pred EEEcccCCCCCHHHHHHHHH----HHHHhc--CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3444 899999999999874 444421 22333 22222222 223 49999999999998764
No 28
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=90.44 E-value=0.95 Score=41.90 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=40.0
Q ss_pred eEEEe-eCCCCcchHHHHHHHHHHHHHHhc--CCCCcEEEecccC-CCCCCCCChHHHHHHHHHHHHh
Q 021558 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMG--YQNPILLLHPLGG-YTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 246 VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~--~~~~~LllhPLvG-~tK~dDvp~~vR~r~ye~ll~n 309 (311)
|.-|. |-||+|.||..+.+.+++.. +.. +.....++.|.-- +.|..-.+.+.|++-.+..+++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l-~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~ 68 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHL-HETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS 68 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHH-HhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc
Confidence 45566 89999999999986443322 220 0001123456432 4577888999999988877654
No 29
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=90.10 E-value=0.71 Score=44.89 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=39.1
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC--C-CCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG--Y-TKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG--~-tK~dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+++ .|++. ++-|+|.|-.- . ++..-++.+.|++-.+..+++
T Consensus 9 sFdP~H~GHl~ii~----~a~~~---~d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~ 63 (325)
T TIGR01526 9 KFYPLHTGHIYLIY----EAFSK---VDELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFKY 63 (325)
T ss_pred ccCCCCHHHHHHHH----HHHHH---CCEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhcc
Confidence 89999999999987 45555 36677766431 1 456778999999999887654
No 30
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=90.10 E-value=1.2 Score=41.81 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=42.9
Q ss_pred ceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCC-CCCCCCChHHHHHHHHHHHHh
Q 021558 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY-TKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 245 ~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~-tK~dDvp~~vR~r~ye~ll~n 309 (311)
+|.=|- |-||+|.||..+.+ .+++. ++-+-+++.|...+ .|...++.+-|++-.+..+++
T Consensus 23 ~IgifGGSFdPiH~GHl~ia~----~~~~~-l~ld~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~ 84 (243)
T PRK06973 23 RIGILGGTFDPIHDGHLALAR----RFADV-LDLTELVLIPAGQPWQKADVSAAEHRLAMTRAAAAS 84 (243)
T ss_pred eEEEECCCCCCCcHHHHHHHH----HHHHH-cCCCEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 355555 99999999999975 34443 12356777786533 465778999999998888763
No 31
>PRK13671 hypothetical protein; Provisional
Probab=89.05 E-value=1.2 Score=43.35 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=32.1
Q ss_pred eEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC---CCChHHHHHHH
Q 021558 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD---DVPLSWRMKQH 303 (311)
Q Consensus 246 VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~d---Dvp~~vR~r~y 303 (311)
|+|.- +-||+|+||.++.+. +.+. ...+.+++.|-..+...+ -++.+.|.+.-
T Consensus 2 ~~GIIaeFNP~H~GHl~~~~~----a~~~-~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma 58 (298)
T PRK13671 2 AIGIIAEYNPFHNGHIYQINY----IKNK-FPNEKIIVILSGKYTQRGEIAVASFEKRKKIA 58 (298)
T ss_pred ceeEEeeeCCccHHHHHHHHH----HHHh-cCCCEEEEEECcCCCCCCCCCCCCHHHHHHHH
Confidence 44555 788999999988763 3443 123456666665555443 34677776654
No 32
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=89.03 E-value=1.2 Score=39.89 Aligned_cols=52 Identities=19% Similarity=0.097 Sum_probs=36.6
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG---~tK~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|++.. +-|+|.+=-. .++..-++.+.|++-.+..+..
T Consensus 7 rF~P~H~GHl~~i~----~a~~~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~ 61 (181)
T cd02168 7 RFQPFHNGHLAVVL----IALEKA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSD 61 (181)
T ss_pred ccCCCCHHHHHHHH----HHHHHC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhc
Confidence 67999999999986 566662 4444432121 3556778999999998887653
No 33
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=88.67 E-value=1.4 Score=38.56 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=34.4
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEec-ccCC--CCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP-LGGY--TKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhP-LvG~--tK~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|++. ++-|++.. --.. ++..-++.+-|++-.+..+.+
T Consensus 7 ~FdP~H~GHl~~i~----~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~ 61 (163)
T cd02166 7 RFQPFHLGHLKVIK----WILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRRALEE 61 (163)
T ss_pred ccCCCCHHHHHHHH----HHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 67999999999986 56666 24555422 1111 233457789999999866543
No 34
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=87.38 E-value=2.6 Score=36.84 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=39.1
Q ss_pred eEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC----CCC-CCCCChHHHHHHHHHHHHh
Q 021558 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG----YTK-ADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 246 VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG----~tK-~dDvp~~vR~r~ye~ll~n 309 (311)
|+-.=|-||+|.||..+.+ .|++.+ +-|++-.--. ..| .--.|.+.|++..+.++++
T Consensus 4 v~~gGtFDplH~GH~~ll~----~A~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 4 VAVGGTFDPLHDGHRALLR----KAFELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred EEEecccCCCCHHHHHHHH----HHHHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 4444499999999999986 455653 3455522222 223 4568999999999988876
No 35
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=87.23 E-value=1.5 Score=42.99 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=39.8
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC---CCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG---YTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG---~tK~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ +|++. ++-|+|-|-.. .++.+-++++.|++-.+..+++
T Consensus 14 ~F~P~H~GHl~~i~----~a~~~---~d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~~ 68 (340)
T PRK05379 14 RFQPFHNGHLAVIR----EALSR---AKKVIVLIGSADLARSIKNPFSFEERAQMIRAALAG 68 (340)
T ss_pred ccCCCCHHHHHHHH----HHHHH---CCEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhhc
Confidence 78999999999986 56666 25677666322 3566779999999999888763
No 36
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=84.72 E-value=2.1 Score=34.34 Aligned_cols=48 Identities=21% Similarity=0.132 Sum_probs=28.1
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCC---CCCChHHHHHHHHH
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKA---DDVPLSWRMKQHEK 305 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~---dDvp~~vR~r~ye~ 305 (311)
+-||+|.||..+++ .|.+.+ +.+++-+-.-..+. +=.+.+-|++..++
T Consensus 7 ~Fdp~H~GH~~l~~----~a~~~~---d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 7 EPGYLHIGHAKLIC----RAKGIA---DQCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred CCCCCCHHHHHHHH----HHHHhC---CcEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 34999999999986 456663 33554444333222 34455556555544
No 37
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=84.44 E-value=3 Score=37.01 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=35.5
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEe-cccCC--CCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH-PLGGY--TKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~Lllh-PLvG~--tK~dDvp~~vR~r~ye~ll~n 309 (311)
+-||+|.||..+++ .|++. ++-|+|- +--.. ++..-++++.|++-.+..++.
T Consensus 7 ~FdP~H~GHl~ii~----~a~~~---~D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~~ 61 (165)
T TIGR01527 7 RFQPFHLGHLEVIK----KIAEE---VDELIIGIGSAQESHTLENPFTAGERILMITQSLKE 61 (165)
T ss_pred ccCCCCHHHHHHHH----HHHHH---CCEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 67999999999986 46666 3555552 22221 235778899999988766553
No 38
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=82.15 E-value=4.4 Score=37.07 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=38.3
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-C--CCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-K--ADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t-K--~dDvp~~vR~r~ye~ll~n 309 (311)
|-||+|.||..+.+ .|++. ..-+-|+..|-..+. | .+-.|.+-|++-.+.++++
T Consensus 11 sFdP~H~GHl~ia~----~~~~~-l~ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~ 67 (197)
T COG1057 11 SFDPPHYGHLLIAE----EALDQ-LGLDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIED 67 (197)
T ss_pred CCCCCCHHHHHHHH----HHHHh-cCCCeEEEecCCCCCCCCCccCCCHHHHHHHHHHHHhc
Confidence 89999999999975 33443 112446666665543 3 4689999999988888764
No 39
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=81.12 E-value=5.3 Score=35.29 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=37.5
Q ss_pred ceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEE----eccc--CCCC--CCCCChHHHHHHHHHH
Q 021558 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLG--GYTK--ADDVPLSWRMKQHEKV 306 (311)
Q Consensus 245 ~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lll----hPLv--G~tK--~dDvp~~vR~r~ye~l 306 (311)
.|+++=+-+++|+||..|++.+.+.|-+.++. .+++ ||-. .+.+ .--.+.+.|++-.+.+
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~--~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l 68 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLP--SAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL 68 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCC--eEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc
Confidence 36777789999999999998766655543322 2333 2311 1122 2346788888877654
No 40
>PLN02388 phosphopantetheine adenylyltransferase
Probab=80.14 E-value=5.9 Score=35.77 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=40.2
Q ss_pred CCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEE----ecccCCCC-CC-CCChHHHHHHHHHHHHh
Q 021558 243 ADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL----HPLGGYTK-AD-DVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 243 w~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lll----hPLvG~tK-~d-Dvp~~vR~r~ye~ll~n 309 (311)
-..|++.=|-+.+|+||..|++.|...+.+ .++| +|+....+ +. =.|++.|++..+.++..
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~------~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~ 85 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELARD------RIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKS 85 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhhhc------CEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHH
Confidence 456888889999999999999754333321 1222 34432222 22 34889999999999864
No 41
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=79.91 E-value=6.5 Score=38.32 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred eEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccC-CCCC-CCCCh-HHHHHHHHHHHHh
Q 021558 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGG-YTKA-DDVPL-SWRMKQHEKVLRL 309 (311)
Q Consensus 246 VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG-~tK~-dDvp~-~vR~r~ye~ll~n 309 (311)
|.-|- |-||+|.||..|.+ .|++.. ..+-+++.|-.- +.|. ...+. +-|++-.+..+++
T Consensus 3 i~i~gGsFdP~H~GHl~la~----~a~~~~-~~d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~ 65 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAK----KAIKKL-KLDKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN 65 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHH----HHHHHh-CCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 34444 89999999999976 344431 124577777543 3343 44555 8899888777664
No 42
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=77.93 E-value=2.7 Score=37.82 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.6
Q ss_pred EEe-eCCCCcchHHHHHHH
Q 021558 248 AFQ-LRNPVHNGHALLMTD 265 (311)
Q Consensus 248 AFQ-TRNPlHRaHe~L~k~ 265 (311)
|.. +.||+|+||..+.+.
T Consensus 3 ~~~~~~DPiH~GHl~i~~~ 21 (182)
T smart00764 3 AIVMNANPFTLGHRYLVEQ 21 (182)
T ss_pred eEEECCCCCCHHHHHHHHH
Confidence 444 789999999999864
No 43
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=76.01 E-value=2 Score=41.46 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHhc-CCCceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCCh
Q 021558 229 LSPAQLRDEFSKR-NADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPL 296 (311)
Q Consensus 229 ltP~e~R~~f~~~-Gw~~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~ 296 (311)
.|.+|+|+..+.. --.+-+||. |=.-+|-||..|++.|+ .+.....-.+|+||+==. ..+|+..
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~---~~~d~vVVSIFVNP~QF~-~~eD~~~ 70 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRAR---AENDVVVVSIFVNPTQFG-PNEDFDK 70 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHH---HHSSEEEEEE---GGGSS-TTSHTTT
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHH---hCCCEEEEEECcCcccCC-Ccchhhh
Confidence 4788999888642 234678888 99999999999998542 232100113677775332 4455553
No 44
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=74.96 E-value=11 Score=38.02 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=39.1
Q ss_pred CceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCC----------CCCCChHHHHHHHHHHHHh
Q 021558 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTK----------ADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 244 ~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK----------~dDvp~~vR~r~ye~ll~n 309 (311)
+..+.+=+-+|+|.||..|++ .|+.. ++.|.+.+..-..+ ..-++.+.|++-.+..+.+
T Consensus 53 ~~~v~~G~FdP~H~GH~~lI~----~A~~~---~d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~ 121 (399)
T PRK08099 53 KIGVVFGKFYPLHTGHIYLIQ----RACSQ---VDELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKY 121 (399)
T ss_pred cEEEEEEecCCCCHHHHHHHH----HHHHH---CCeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCC
Confidence 456666699999999999987 45555 24444433322211 3457889999988877643
No 45
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=73.45 E-value=3.5 Score=41.45 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=16.5
Q ss_pred eEEEee-CCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCC
Q 021558 246 VFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKAD 292 (311)
Q Consensus 246 VvAFQT-RNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~d 292 (311)
|+|.-+ =||+|+||.|.++.+ .+. +++|.+++..=+-....|
T Consensus 3 ~~GIIaEYNPFHnGH~y~i~~~----k~~-~~ad~ii~vMSGnFvQRG 45 (388)
T PF05636_consen 3 VVGIIAEYNPFHNGHLYQIEQA----KKI-TGADVIIAVMSGNFVQRG 45 (388)
T ss_dssp ----E---TT--HHHHHHHHHH----H----TSSEEEEEE--TTSBTS
T ss_pred CCCeEEeECCccHHHHHHHHHH----hcc-CCCCEEEEEECCCcccCC
Confidence 444443 589999999987643 332 223444444444444443
No 46
>PRK13670 hypothetical protein; Provisional
Probab=72.73 E-value=4.9 Score=40.38 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=32.5
Q ss_pred ceEEEee-CCCCcchHHHHHHHHHHHHHHhcCCCCcEEEeccc--CCCCCCCCChHHHHHHHH
Q 021558 245 AVFAFQL-RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG--GYTKADDVPLSWRMKQHE 304 (311)
Q Consensus 245 ~VvAFQT-RNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLv--G~tK~dDvp~~vR~r~ye 304 (311)
+|+|.-+ -||+|+||.++++.+++.+-+ + ..+.|-|-- ..-.+-=++.+.|.+...
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~---~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~ 60 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-D---VTIAVMSGNFVQRGEPAIVDKWTRAKMAL 60 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-C---CcEEEecHHHhCCCCCCCCCHHHHHHHHH
Confidence 3677774 799999999999866554432 2 223333422 111122556666765544
No 47
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=71.38 E-value=18 Score=35.73 Aligned_cols=96 Identities=19% Similarity=0.126 Sum_probs=59.7
Q ss_pred hhHHHHHHhcCCEEEe---eeEEEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEe-eCCCCcchHHHHHHHHHHH
Q 021558 194 PYVDQAITYAGNWLIG---GDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTRRR 269 (311)
Q Consensus 194 PgV~~~~~~~g~~~vg---G~v~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQ-TRNPlHRaHe~L~k~~~~~ 269 (311)
|--+.+++..|=|-|. +-+.+++..+ ..|.+|..+-+..|. --++|-+.. -+||.-.||.||+. +
T Consensus 99 p~~~~lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~-----~gkkIgaIVMNANPFTLGH~YLVE----q 167 (352)
T COG3053 99 PEYAALFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRH-----PGKKIGAIVMNANPFTLGHRYLVE----Q 167 (352)
T ss_pred hhHHHHHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhcc-----CCCeeEEEEEeCCCccchhHHHHH----H
Confidence 4444456666766553 3345555322 244454433333332 246677776 89999999999985 3
Q ss_pred HHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHH
Q 021558 270 LLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEK 305 (311)
Q Consensus 270 ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ 305 (311)
|... | +.|=.++|+. ..-++|++.|++-.+.
T Consensus 168 Aaaq---c-DwlHLFvV~e-D~S~f~y~~R~~Lv~~ 198 (352)
T COG3053 168 AAAQ---C-DWLHLFVVKE-DSSLFPYEDRLDLVKK 198 (352)
T ss_pred HHhh---C-CEEEEEEEec-ccccCCHHHHHHHHHH
Confidence 4443 3 4666677774 7889999999986554
No 48
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=70.88 E-value=2.8 Score=40.50 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHh-cCCCceEEEe-eCCCCcchHHHHHHHHH
Q 021558 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (311)
Q Consensus 229 ltP~e~R~~f~~-~Gw~~VvAFQ-TRNPlHRaHe~L~k~~~ 267 (311)
.|++|+|+..++ +...+-+||. |=.=+|+||..|++.++
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~LH~GH~~LI~~a~ 45 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGNLHDGHMSLIDRAV 45 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 478899988764 2224568887 43339999999998543
No 49
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=69.94 E-value=9.3 Score=30.76 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=42.6
Q ss_pred EEEeeeEEEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcc------hHHHHHHHHHHHHHHhcCCCCc
Q 021558 206 WLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHN------GHALLMTDTRRRLLEMGYQNPI 279 (311)
Q Consensus 206 ~~vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHR------aHe~L~k~~~~~ale~~~~~~~ 279 (311)
+||+|+++++.. +| +..=.+.-+.++++|.. |+ ||.+. -.+.-|+.+.++.. +||.
T Consensus 1 iYIaGPmtG~~~--~N------~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~----~cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLPD--YN------RPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLS----DCDA 62 (92)
T ss_pred CeEeCCcCCCcc--hH------HHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHH----hCCE
Confidence 489999997752 11 11223445556777843 33 88887 44555665544443 3577
Q ss_pred EEEecccCCCCCCCCChH
Q 021558 280 LLLHPLGGYTKADDVPLS 297 (311)
Q Consensus 280 LllhPLvG~tK~dDvp~~ 297 (311)
+.+.| ||..+-.-..|
T Consensus 63 i~~l~--gWe~S~GA~~E 78 (92)
T PF14359_consen 63 IYMLP--GWENSRGARLE 78 (92)
T ss_pred EEEcC--CcccCcchHHH
Confidence 77765 88776554443
No 50
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=68.11 E-value=16 Score=30.20 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=33.8
Q ss_pred CceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEec----ccCC-CCCCCCChHHHHHHHHHH
Q 021558 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LGGY-TKADDVPLSWRMKQHEKV 306 (311)
Q Consensus 244 ~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhP----LvG~-tK~dDvp~~vR~r~ye~l 306 (311)
+.|++.=+-+++|+||..+++. |.+.+ +-+.+-. +... .+.-=.+.+-|++..+.+
T Consensus 2 ~~v~~~G~FDgvH~GH~~ll~~----a~~~~---~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 2 KVVITYGTFDLLHIGHLNLLER----AKALG---DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESI 62 (129)
T ss_pred cEEEEeeeeccCCHHHHHHHHH----HHHhC---CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcC
Confidence 3567777899999999999874 45553 2222221 1111 123446778888877654
No 51
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=67.28 E-value=7.4 Score=38.90 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCceEEEe-----eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHH
Q 021558 242 NADAVFAFQ-----LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQ 302 (311)
Q Consensus 242 Gw~~VvAFQ-----TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ 302 (311)
+-+.++++. -||++|-+|.+..+ ++||+.| .|-++-.|+.=.+.+-|+=+...++.
T Consensus 29 ~~d~~i~~msgdf~qRgepai~~k~~r~---~~aL~~g--~D~VIelP~~~s~q~a~~fa~~av~i 89 (358)
T COG1323 29 KGDEIIAVMSGDFTQRGEPAIGHKWERK---KMALEGG--ADLVIELPLERSGQGAPYFATRAVRI 89 (358)
T ss_pred cCCceEEeeecchhhcCCCccccHHHHH---hhhhhcC--ceEEEEcceEEecCCCchhhHHHHHH
Confidence 345566655 47777777777543 5777775 33455556665556655555444443
No 52
>PLN02660 pantoate--beta-alanine ligase
Probab=66.82 E-value=4 Score=39.50 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHh-cCCCceEEEe-eCCCCcchHHHHHHHH
Q 021558 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDT 266 (311)
Q Consensus 229 ltP~e~R~~f~~-~Gw~~VvAFQ-TRNPlHRaHe~L~k~~ 266 (311)
.|++|+|+..+. +.-.+-+||. |=.-+|+||..|++.+
T Consensus 4 ~~~~~lr~~~~~~~~~g~~igfVpTmG~LH~GH~~LI~~a 43 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQGKRIALVPTMGYLHEGHLSLVRAA 43 (284)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEEcCchhhHHHHHHHHHH
Confidence 468899988754 2224578888 5444999999999754
No 53
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=66.65 E-value=12 Score=36.89 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=38.4
Q ss_pred eEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEe----cccCCCCCCCCChHHHHHHHHHHHHhh
Q 021558 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----PLGGYTKADDVPLSWRMKQHEKVLRLT 310 (311)
Q Consensus 246 VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lllh----PLvG~tK~dDvp~~vR~r~ye~ll~ny 310 (311)
|+.-=|-+.+|-||..|.+ .|.+.+ +.|+|- .++..+|....|++.|++..+++|+.|
T Consensus 3 V~vgGTFD~lH~GH~~lL~----~A~~~g---d~LiVgvt~D~~~~~~k~~~~~~e~R~~~v~~fl~~~ 64 (322)
T PRK01170 3 TVVGGTFSKLHKGHKALLK----KAIETG---DEVVIGLTSDEYVRKNKVYPIPYEDRKRKLENFIKKF 64 (322)
T ss_pred EEEccccccCChHHHHHHH----HHHHcC---CEEEEEEccHHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 3334489999999999986 456664 333331 233333322299999999999998643
No 54
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=65.42 E-value=17 Score=32.59 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=40.9
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCCCCCCCChHHHHHHHHHHHHh
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYTKADDVPLSWRMKQHEKVLRL 309 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~tK~dDvp~~vR~r~ye~ll~n 309 (311)
|-+|+++||.-|+++ |+.+ -|-+.|-=..-+.|..-++.+-|++-.+.....
T Consensus 10 SFDPiTnGHlDii~R----A~~~---Fd~viVaV~~np~K~plFsleER~~l~~~~~~~ 61 (159)
T COG0669 10 SFDPITNGHLDIIKR----ASAL---FDEVIVAVAINPSKKPLFSLEERVELIREATKH 61 (159)
T ss_pred CCCCCccchHHHHHH----HHHh---ccEEEEEEEeCCCcCCCcCHHHHHHHHHHHhcC
Confidence 789999999999874 4444 245666666777899999999999988877654
No 55
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=63.16 E-value=20 Score=29.81 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=33.7
Q ss_pred ceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEec----cc-CCCCCCCCChHHHHHHHHHH
Q 021558 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHP----LG-GYTKADDVPLSWRMKQHEKV 306 (311)
Q Consensus 245 ~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhP----Lv-G~tK~dDvp~~vR~r~ye~l 306 (311)
.|+++=+-||+|+||..+.+ .|.+.+ +-+.+-+ .+ ...+.-=.+.+-|++..+.+
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~----~a~~~~---~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~ 62 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLE----EAKKLG---DYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62 (136)
T ss_pred EEEEcCccCCCCHHHHHHHH----HHHHhC---CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcC
Confidence 45555688999999999986 455553 2233222 11 11233456778888887763
No 56
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=62.17 E-value=8.1 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=19.5
Q ss_pred EecCHHHHHhcCCC---------CeEEEeCCCCcEEEEEEeC
Q 021558 139 LAIDDEQKRRIGES---------TRVALVDSDDNVVAILNDI 171 (311)
Q Consensus 139 L~v~~e~a~~l~~g---------~~vaL~~~eG~~vAiL~V~ 171 (311)
++++++++..+.-| ..++..+++|+++|+++-.
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEE
T ss_pred eECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEcc
Confidence 56677777666444 4566688999999999643
No 57
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=58.54 E-value=21 Score=37.36 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcCCCceEEEe-eCCCCcchHHHHHHHH
Q 021558 229 LSPAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDT 266 (311)
Q Consensus 229 ltP~e~R~~f~~~Gw~~VvAFQ-TRNPlHRaHe~L~k~~ 266 (311)
.|++|+|+......-+ -+||. |=.-+|.||..|++.|
T Consensus 5 ~~~~~l~~~~~~~~~~-~ig~VPTMG~LH~GHlsLi~~A 42 (512)
T PRK13477 5 RTVAGLRAWLRQQRSE-TIGFVPTMGALHQGHLSLIRRA 42 (512)
T ss_pred ecHHHHHHHHHHhcCC-cEEEECCCcchhHHHHHHHHHH
Confidence 4789999998753323 78888 9999999999999743
No 58
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=57.66 E-value=26 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=28.2
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy 174 (311)
+-++.++|+ +|+.||.|.|..+.|++.+...+++--
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 37 VEINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 456777776 568999999999889988888877633
No 59
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=56.93 E-value=25 Score=34.21 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCHHHHHHHHH-hcCCCceEEEe-eCCCCcchHHHHHHHH
Q 021558 229 LSPAQLRDEFS-KRNADAVFAFQ-LRNPVHNGHALLMTDT 266 (311)
Q Consensus 229 ltP~e~R~~f~-~~Gw~~VvAFQ-TRNPlHRaHe~L~k~~ 266 (311)
-|.+++|+..+ .|.-.+-+||. |=+-+|.||--|++.|
T Consensus 5 ~ti~~lr~~~~~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A 44 (285)
T COG0414 5 TTIAELRQAIKALRKEGKRVGLVPTMGNLHEGHLSLVRRA 44 (285)
T ss_pred ehHHHHHHHHHHHHHcCCEEEEEcCCcccchHHHHHHHHH
Confidence 47889998776 22333469999 9999999999999743
No 60
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=56.71 E-value=30 Score=30.15 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=34.6
Q ss_pred ceEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEeccc-----CCCC---CCCCChHHHHHHHHH
Q 021558 245 AVFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLG-----GYTK---ADDVPLSWRMKQHEK 305 (311)
Q Consensus 245 ~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLv-----G~tK---~dDvp~~vR~r~ye~ 305 (311)
+||-+- +-+|+|.||..+++ .|.+.| +-| +-=+. -..| .--++.+-|+...++
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~----~A~~lg---d~l-iVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~ 64 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLE----KARELG---DYL-IVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA 64 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHH----HHHHcC---CEE-EEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh
Confidence 344444 89999999999986 566664 333 32222 2223 247899999988755
No 61
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=56.44 E-value=25 Score=28.69 Aligned_cols=35 Identities=11% Similarity=-0.022 Sum_probs=28.2
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+-++.++++ +|+.||.|.|.+..|.+.+...+++-
T Consensus 35 v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~~ 71 (130)
T cd02781 35 AEINPETAAKLGIADGDWVWVETPRGRARQKARLTPG 71 (130)
T ss_pred EEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECCC
Confidence 556777776 56899999999988999888877663
No 62
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=55.20 E-value=25 Score=27.95 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=28.0
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+-++.++|+ +|+.||.|.|.+..|++.+...+++-
T Consensus 37 v~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (120)
T cd00508 37 VEIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDR 73 (120)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCC
Confidence 456777776 56899999999988998888887663
No 63
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=54.91 E-value=24 Score=31.88 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=31.1
Q ss_pred eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-----CCCCCChHHHHHHHHHHHH
Q 021558 251 LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-----KADDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 251 TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t-----K~dDvp~~vR~r~ye~ll~ 308 (311)
.-.|+|.||-++++ .|++. .|-|+| ++|.. ..+-+.+.-|+-..+..|.
T Consensus 11 RFqP~H~GHl~vi~----~al~~---vDeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~ 64 (172)
T COG1056 11 RFQPLHTGHLYVIK----RALSK---VDELII--VIGSAQESHTLKNPFTAGERIPMIRDRLR 64 (172)
T ss_pred ccCCccHhHHHHHH----HHHHh---CCEEEE--EEccCcccccccCCCCccchhHHHHHHHH
Confidence 45799999999986 67776 244443 56763 2334456667666665443
No 64
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=54.79 E-value=16 Score=28.82 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=26.9
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
+-+++++|+ +|+.||.|.|..+.|.+.+...+++
T Consensus 32 v~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~ 67 (110)
T PF01568_consen 32 VEINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTD 67 (110)
T ss_dssp EEEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEET
T ss_pred EEEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEec
Confidence 447777776 5679999999998999999998877
No 65
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=54.51 E-value=35 Score=27.39 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=28.7
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy 174 (311)
+.++.++|+ +|+.||.|.+.++.|++.+.+.+.+--
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCc
Confidence 456777766 568999999999899999888887743
No 66
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=54.04 E-value=35 Score=27.24 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=29.4
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy 174 (311)
+.++.++|+ +|+.||.|.|.+..|++.+...+++--
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i 70 (116)
T cd02786 33 LLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDV 70 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCC
Confidence 467777776 578999999999899999988887743
No 67
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=53.91 E-value=29 Score=33.46 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHh-cCCCceEEEe-eCCCCcchHHHHHHHHH
Q 021558 229 LSPAQLRDEFSK-RNADAVFAFQ-LRNPVHNGHALLMTDTR 267 (311)
Q Consensus 229 ltP~e~R~~f~~-~Gw~~VvAFQ-TRNPlHRaHe~L~k~~~ 267 (311)
.|++|+|+..+. +.-.+-+||. |=.=+|+||..|++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ig~V~TmG~LH~GH~~LI~~a~ 45 (277)
T cd00560 5 TTIAELRAWLRNWRAQGKTIGFVPTMGALHEGHLSLVRRAR 45 (277)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 468888888754 2223456665 54449999999998543
No 68
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=53.80 E-value=34 Score=27.93 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=30.1
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcccC
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy~ 175 (311)
+.++.++|+ +|+.||.|.|..+.|++.+...+++--+
T Consensus 34 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v~ 72 (124)
T cd02785 34 VKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGIQ 72 (124)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCcC
Confidence 567787776 5689999999998999999988877443
No 69
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=53.09 E-value=10 Score=32.50 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=44.6
Q ss_pred cCCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeC
Q 021558 80 TLPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVD 159 (311)
Q Consensus 80 ~lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~ 159 (311)
.+....|.+++++-|-.=.+.+ =||+.++|+++- .+.|.+ ++.+.-|++|..|.+.-
T Consensus 61 kve~a~ie~~~~q~lY~dg~~~-----~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v~~ 117 (131)
T COG0231 61 KVEVAIVERKTAQYLYIDGDFY-----VFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEVLL 117 (131)
T ss_pred EEEEeEEeeeeEEEEEcCCCeE-----EEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEEEE
Confidence 4455666666665222222222 399999999985 344544 67788899999998876
Q ss_pred CCCcEEEEE
Q 021558 160 SDDNVVAIL 168 (311)
Q Consensus 160 ~eG~~vAiL 168 (311)
.+|+++++-
T Consensus 118 ~~g~~i~v~ 126 (131)
T COG0231 118 YNGEPIAVE 126 (131)
T ss_pred ECCEEEEEE
Confidence 689998863
No 70
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=52.80 E-value=46 Score=28.41 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=37.1
Q ss_pred HhcCCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEE--ecccCCCCCC---CCChHHHHHHHHHH
Q 021558 239 SKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLL--HPLGGYTKAD---DVPLSWRMKQHEKV 306 (311)
Q Consensus 239 ~~~Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lll--hPLvG~tK~d---Dvp~~vR~r~ye~l 306 (311)
++.+-+.|++.=.-+-+|+||..+++. |.+.+.. -.+.+ +|-....|+. =.+.+-|++..+++
T Consensus 7 ~~~~~~~v~~~G~FDgvH~GH~~ll~~----a~~~~~~-~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 7 RARGKKIVFTNGCFDILHAGHVSYLQQ----ARALGDR-LVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred HHcCCCEEEEeCcccccCHHHHHHHHH----HHHhCCc-cEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 344546788888999999999999874 4454311 12333 2322111221 45667787776665
No 71
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=52.74 E-value=35 Score=27.63 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=29.1
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCccc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIY 174 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy 174 (311)
+.++.++|+ +|+.||.|.|.++.|++.+...+.+--
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i 72 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTV 72 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 457777776 568999999999899999888887743
No 72
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=52.56 E-value=26 Score=28.08 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=28.7
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 138 vL~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
.+.++.++|+ +|+.||.|.+.++.|.+.+...+.+
T Consensus 32 ~v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 32 VVFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 3567777776 5689999999998999988888876
No 73
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=51.96 E-value=44 Score=28.61 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=33.8
Q ss_pred CCCceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEe--cccCCCC-CCCCChHHHHHHHHHH
Q 021558 242 NADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH--PLGGYTK-ADDVPLSWRMKQHEKV 306 (311)
Q Consensus 242 Gw~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lllh--PLvG~tK-~dDvp~~vR~r~ye~l 306 (311)
|-+.|++.=+-+.+|+||..+++. |.+.+.. -.+.++ +.+...+ .-=.+.+-|++..+.+
T Consensus 3 ~~~~vv~~G~FDgvH~GH~~ll~~----a~~~~~~-~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l 65 (144)
T cd02172 3 GKTVVLCHGVFDLLHPGHVRHLQA----ARSLGDI-LVVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL 65 (144)
T ss_pred CCEEEEEecccCCCCHHHHHHHHH----HHHhCCe-EEEEEeChHHhccCCCCCCCCHHHHHHHHHcc
Confidence 334577777899999999999874 4554310 012222 2232222 2234667787766543
No 74
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=51.89 E-value=1.4 Score=41.43 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=35.7
Q ss_pred EecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCC------CHHHHHHHhhCCCCC
Q 021558 139 LAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH------PKEERIARTWGTTAP 191 (311)
Q Consensus 139 L~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~------Dk~~ea~~VfGT~d~ 191 (311)
+.|+.+.+..++.|.++.|-+ +|.+++||+. -.++..+++|||+|+
T Consensus 21 vlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~ 72 (234)
T COG1500 21 VLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDP 72 (234)
T ss_pred EEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCH
Confidence 346677778888999888865 6778899987 245678999999993
No 75
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=51.86 E-value=32 Score=30.70 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=38.3
Q ss_pred eEEEe-eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEe----cccCC-CCCCCCChHHHHHHHHHHHH
Q 021558 246 VFAFQ-LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH----PLGGY-TKADDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 246 VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~~~~~~Lllh----PLvG~-tK~dDvp~~vR~r~ye~ll~ 308 (311)
+||.= |-.++|.||..|.. .|.+.| ..+.|- =++.. .+..=.|+++|++-...+++
T Consensus 7 ~vavGGTFd~LH~GHk~LL~----~A~~~G---~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~ 68 (158)
T COG1019 7 KVAVGGTFDRLHDGHKKLLE----VAFEIG---DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLE 68 (158)
T ss_pred EEEecccchhhhhhHHHHHH----HHHHhC---CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHH
Confidence 45555 99999999999986 577876 234322 12222 45566799999998877765
No 76
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=51.73 E-value=18 Score=29.89 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=29.9
Q ss_pred EEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEe--cccCCC-CCCCCChHHHHHHHHHH
Q 021558 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLH--PLGGYT-KADDVPLSWRMKQHEKV 306 (311)
Q Consensus 247 vAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~Lllh--PLvG~t-K~dDvp~~vR~r~ye~l 306 (311)
+++=+-+.+|+||..+++. |.+.+.+ ..+.++ |+.... +.-=.+.+-|++..+.+
T Consensus 2 ~~~G~FDg~H~GH~~~l~~----a~~~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~ 59 (125)
T TIGR01518 2 LTYGTFDLLHWGHINLLER----AKQLGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETI 59 (125)
T ss_pred EEcceeCCCCHHHHHHHHH----HHHcCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcC
Confidence 3444678999999999874 4454311 122223 222111 22235667887776643
No 77
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=50.37 E-value=33 Score=27.01 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=27.7
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
+.++.++++ +|+.||.|.|....|.+.+...+.+
T Consensus 31 v~inp~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~ 66 (96)
T cd02788 31 ARLSPADAARLGLADGDLVEFSLGDGTLTLPVQISK 66 (96)
T ss_pred EEECHHHHHHcCCCCCCEEEEEECCeEEEEEEEECC
Confidence 457777777 5689999999998899888887766
No 78
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=49.28 E-value=17 Score=33.49 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCCC-----CCCCCChHHHHHHHHHHH
Q 021558 252 RNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGYT-----KADDVPLSWRMKQHEKVL 307 (311)
Q Consensus 252 RNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~t-----K~dDvp~~vR~r~ye~ll 307 (311)
-+|+|+||.++++ .|++. ++-|+|- +|.. ..+=+.+.-|+.-....|
T Consensus 13 FQPfH~GHl~~I~----~al~~---~devII~--IGSA~~s~t~~NPFTa~ER~~MI~~aL 64 (196)
T PRK13793 13 FQPFHLAHMQTIE----IALQQ---SRYVILA--LGSAQMERNIKNPFLAIEREQMILSNF 64 (196)
T ss_pred CCCCcHHHHHHHH----HHHHh---CCEEEEE--EccCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 4799999999986 56776 3444442 4532 334455666666655554
No 79
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=49.00 E-value=37 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=28.4
Q ss_pred EEecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 138 VLAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 138 vL~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
++.++.++|+ +|+.||.|.|....|.+.+...+.+
T Consensus 32 ~v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 32 YCEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 3567777777 5689999999998899888887776
No 80
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=47.43 E-value=39 Score=28.38 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+.++.++|+ +|+.||.|.|.+..|.+.+.+.+++-
T Consensus 32 v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~ 68 (143)
T cd02780 32 VWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEG 68 (143)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCC
Confidence 456777776 56899999999989999988888763
No 81
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=46.85 E-value=53 Score=26.42 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=27.9
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+.++.++|+ +|+.||.|.|.+..|.+.+...+.+-
T Consensus 32 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~v~v~~~ 68 (123)
T cd02778 32 LWINPETAARLGIKDGDRVEVSSARGKVTGKARLTEG 68 (123)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCcEEEEEEEcCC
Confidence 456777766 56899999999988999988887763
No 82
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=46.76 E-value=41 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.9
Q ss_pred EecCHHHHHh--cCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKRR--IGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~~--l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+-++.++|++ |+.||.|.+.+..|.+.+...+.+-
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (122)
T cd02791 37 VEIHPEDAARLGLKEGDLVRVTSRRGEVVLRVRVTDR 73 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 4577777764 5799999999988998888877663
No 83
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=46.42 E-value=59 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=23.1
Q ss_pred EEEeeCCCCcchHHHHHHHHHHHHHHhcC
Q 021558 247 FAFQLRNPVHNGHALLMTDTRRRLLEMGY 275 (311)
Q Consensus 247 vAFQTRNPlHRaHe~L~k~~~~~ale~~~ 275 (311)
+++=.-+-+|+||..|++.+.+.|.+.+.
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~ 30 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGL 30 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCC
Confidence 45556788999999999988887777653
No 84
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=44.99 E-value=30 Score=33.34 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHhcCC-CceEEEe-eCCCCcchHHHHHHHHH
Q 021558 229 LSPAQLRDEFSKRNA-DAVFAFQ-LRNPVHNGHALLMTDTR 267 (311)
Q Consensus 229 ltP~e~R~~f~~~Gw-~~VvAFQ-TRNPlHRaHe~L~k~~~ 267 (311)
.|.+|+|+.+.+... .+-+||- |=.=+|+||..|++.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~lH~GH~~Li~~a~ 45 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGALHEGHLSLVREAR 45 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCceeHHHHHHHHHHH
Confidence 467888888754211 2345565 43339999999997543
No 85
>PRK13671 hypothetical protein; Provisional
Probab=44.73 E-value=37 Score=33.10 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred EeeeEEEeccCCCCCCCccccCCHHHHHHHHHhcCCCceEEEeeCCCCcchHHHHH-HHHH-HHHHHhcCCCCcEEE-ec
Q 021558 208 IGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVFAFQLRNPVHNGHALLM-TDTR-RRLLEMGYQNPILLL-HP 284 (311)
Q Consensus 208 vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~VvAFQTRNPlHRaHe~L~-k~~~-~~ale~~~~~~~Lll-hP 284 (311)
+.|=|.-++|++.+ . -..+++..++.+.+.|+...+-||+|||.-.++ +..| ++|++.| .+|+| .|
T Consensus 2 ~~GIIaeFNP~H~G----H----l~~~~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G---~DLViELP 70 (298)
T PRK13671 2 AIGIIAEYNPFHNG----H----IYQINYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYG---VDKVIKLP 70 (298)
T ss_pred ceeEEeeeCCccHH----H----HHHHHHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcC---CCEEEecc
Confidence 45767777887753 2 455677777888999999999999999965551 1111 3555555 34555 57
Q ss_pred ccCCCCCC
Q 021558 285 LGGYTKAD 292 (311)
Q Consensus 285 LvG~tK~d 292 (311)
.+..+.+.
T Consensus 71 ~~~a~~sA 78 (298)
T PRK13671 71 FEYATQAA 78 (298)
T ss_pred HHHHhhch
Confidence 66655443
No 86
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=44.23 E-value=46 Score=28.74 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
+.++.++|+ +|+.||.|.+..+.|.+.+.+.+.+
T Consensus 34 v~inp~dA~~~GI~dGd~V~v~s~~G~~~~~a~v~~ 69 (156)
T cd02783 34 LYMHPKTAKELGIKDGDWVWVESVNGRVKGQARFTE 69 (156)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeeEEEEEEECC
Confidence 567777776 5789999999998999998888876
No 87
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=44.05 E-value=39 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=28.2
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+.++.++|+ +|+.||.|.|.+..|.+.+...+.+-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 456777776 56899999999989999888887763
No 88
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=43.29 E-value=30 Score=31.63 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.0
Q ss_pred eeCCCCcchHHHHHHH
Q 021558 250 QLRNPVHNGHALLMTD 265 (311)
Q Consensus 250 QTRNPlHRaHe~L~k~ 265 (311)
+..||.+.||.||+..
T Consensus 6 MNaNPFT~GH~yLiE~ 21 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQ 21 (182)
T ss_pred EcCCCCccHHHHHHHH
Confidence 4799999999999863
No 89
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=42.66 E-value=26 Score=30.60 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=21.7
Q ss_pred CceEEEeeCCCCcchHHHHHHHHHHHHHHhc
Q 021558 244 DAVFAFQLRNPVHNGHALLMTDTRRRLLEMG 274 (311)
Q Consensus 244 ~~VvAFQTRNPlHRaHe~L~k~~~~~ale~~ 274 (311)
+.|+++=.-+=+|+||..|++.+.+.|.+.+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~ 36 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKG 36 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcc
Confidence 4677777889999999999998888887764
No 90
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=42.47 E-value=65 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=29.2
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcccC
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEIYK 175 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~eiy~ 175 (311)
+-++.++|+ +|+.||.|.|....|.+.+...+.+--.
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~g~~~~~~~~~~~v~ 73 (129)
T cd02782 35 LRIHPDDAAALGLADGDKVRVTSAAGSVEAEVEVTDDMM 73 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCCeEEEEEEECCCcC
Confidence 456777776 5689999999998899988888877443
No 91
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=40.27 E-value=49 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
+-++.++++ .|+.||.|.|.+..|.+.+.+.+.+
T Consensus 25 v~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 25 VEINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 446677766 5689999999998899888887665
No 92
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=37.28 E-value=51 Score=28.30 Aligned_cols=35 Identities=3% Similarity=-0.118 Sum_probs=27.9
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+.++.++|+ +|+.||.|.|..+.|.+.+...|.+-
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~~ 76 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQPG 76 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCC
Confidence 456666665 67899999999888999988887763
No 93
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=37.08 E-value=1.1e+02 Score=26.56 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceEEEeeCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecccCC------CCCCCCChHHHHHHHHHH
Q 021558 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPLGGY------TKADDVPLSWRMKQHEKV 306 (311)
Q Consensus 245 ~VvAFQTRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPLvG~------tK~dDvp~~vR~r~ye~l 306 (311)
+|...=+-+|+|.||..+++ .|.+.|- + +-||.=+... +..-=++.+-|+++.+++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~----~A~~lg~-~-d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~ 65 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALR----QAKKLGP-N-DYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHC 65 (150)
T ss_pred EEEEeCccCCCCHHHHHHHH----HHHHhCC-C-CEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhc
Confidence 45555589999999999986 4566631 1 2333333221 112458889999888765
No 94
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=36.08 E-value=57 Score=26.70 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+-++.++++ +|+.||.|.|....|.+.+...+.+-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 556777766 56899999999988999888887763
No 95
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=34.46 E-value=38 Score=27.60 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCCcEEEecccCCC
Q 021558 267 RRRLLEMGYQNPILLLHPLGGYT 289 (311)
Q Consensus 267 ~~~ale~~~~~~~LllhPLvG~t 289 (311)
...|++.. .+|.||||..|..
T Consensus 69 L~~al~~~--G~G~LvHP~~G~~ 89 (93)
T PF07157_consen 69 LIAALEAP--GPGELVHPWFGSM 89 (93)
T ss_pred HHHHHcCC--CCeEEecCCCceE
Confidence 34577752 4899999999964
No 96
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=33.58 E-value=24 Score=26.19 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.4
Q ss_pred HhcCCCCeEEEeCCCCcEEEE
Q 021558 147 RRIGESTRVALVDSDDNVVAI 167 (311)
Q Consensus 147 ~~l~~g~~vaL~~~eG~~vAi 167 (311)
.=|++|..+.+.--+|+++++
T Consensus 38 ~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 38 KFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred hhCcCCCEEEEEEECCEEEEE
Confidence 347899988877558998886
No 97
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.41 E-value=64 Score=26.66 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=28.0
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIE 172 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~e 172 (311)
+.++.++|+ .|+.||.|.+.+..|.+.+...+++
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~ 70 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTD 70 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 567777766 6789999999998899988888766
No 98
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=33.15 E-value=51 Score=24.22 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.7
Q ss_pred cCCCCeEEEeCCCCcEEEEEE
Q 021558 149 IGESTRVALVDSDDNVVAILN 169 (311)
Q Consensus 149 l~~g~~vaL~~~eG~~vAiL~ 169 (311)
+++|+.|++.+.+|+.+|+-.
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~ 51 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGL 51 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEE
Confidence 678999999998899999875
No 99
>PRK04980 hypothetical protein; Provisional
Probab=32.98 E-value=46 Score=27.67 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=26.2
Q ss_pred HhcCCCCeEEE-eCCCCcEEEEEEeCcccCC
Q 021558 147 RRIGESTRVAL-VDSDDNVVAILNDIEIYKH 176 (311)
Q Consensus 147 ~~l~~g~~vaL-~~~eG~~vAiL~V~eiy~~ 176 (311)
...++|+.+.+ ++.+|++++.+.|.++...
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i 60 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPV 60 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEE
Confidence 46889999999 7778999999999998766
No 100
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=32.90 E-value=23 Score=25.22 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=17.1
Q ss_pred HHHhcCCCCeEEEeCCCCcEEEE
Q 021558 145 QKRRIGESTRVALVDSDDNVVAI 167 (311)
Q Consensus 145 ~a~~l~~g~~vaL~~~eG~~vAi 167 (311)
.+.-|++|..|.+...+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 35668999998876558887763
No 101
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=32.77 E-value=45 Score=25.20 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=22.9
Q ss_pred eeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEe
Q 021558 135 VPIVLAIDDEQKRRIGESTRVALVDSDDNVVAILND 170 (311)
Q Consensus 135 iPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V 170 (311)
.|=+..++.+ ++.||.|.+.+.+|+.+|+=..
T Consensus 21 ~~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 21 APGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred hHHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 3555666554 6789999999988999988653
No 102
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=32.39 E-value=77 Score=36.69 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=58.8
Q ss_pred cCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCC-CCcEEEEEEeCcccCCCHHH
Q 021558 102 ASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS-DDNVVAILNDIEIYKHPKEE 180 (311)
Q Consensus 102 fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~-eG~~vAiL~V~eiy~~Dk~~ 180 (311)
|.+++.+++.+.|.+|- |.- + -+.+.|+++..+.+..++.-.|+++ +|++...+.-.|+|. +
T Consensus 377 f~~yd~~~~~e~y~tv~---------~qN--~--N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw~----k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQN--S--NNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLWE----K 439 (1220)
T ss_pred ccccccccccchhcccc---------ccc--c--cceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHHH----H
Confidence 77899999999999985 221 2 3356688999999999999999875 689999999999993 3
Q ss_pred HHHHhhCCCCCCChhHH
Q 021558 181 RIARTWGTTAPGLPYVD 197 (311)
Q Consensus 181 ea~~VfGT~d~~HPgV~ 197 (311)
-++..|-|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 5667776655 6664
No 103
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.99 E-value=1.1e+02 Score=26.11 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.6
Q ss_pred EecCHHHHH--hcCCCCeEEEeCCCCcEEEEEEeCcc
Q 021558 139 LAIDDEQKR--RIGESTRVALVDSDDNVVAILNDIEI 173 (311)
Q Consensus 139 L~v~~e~a~--~l~~g~~vaL~~~eG~~vAiL~V~ei 173 (311)
+-++.++|+ +|+.||.|.+.+..|++.+...+++-
T Consensus 33 v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~~ 69 (141)
T cd02776 33 VWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSPR 69 (141)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECCC
Confidence 567887776 67899999999888998888887763
No 104
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=45 Score=29.70 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=23.8
Q ss_pred eeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEE
Q 021558 136 PIVLAIDDEQKRRIGESTRVALVDSDDNVVAIL 168 (311)
Q Consensus 136 PIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL 168 (311)
=.+++++++ |.+||+|..+|.+|+++|+=
T Consensus 102 KfVi~~D~~----iR~~dEvlVVne~d~LlAvG 130 (155)
T COG1370 102 KFVIDVDEE----IRAGDEVLVVNEDDELLAVG 130 (155)
T ss_pred hheeccCcc----cCCCCeEEEECCCCcEEEee
Confidence 447777765 78999999999999998864
No 105
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=31.90 E-value=75 Score=29.99 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=44.9
Q ss_pred eEEEeeCCCCcchHHHHHHHHHHHHHHhc-CCCCcEEEecccCCC-CCCCCChHHHHHHHHHHHH
Q 021558 246 VFAFQLRNPVHNGHALLMTDTRRRLLEMG-YQNPILLLHPLGGYT-KADDVPLSWRMKQHEKVLR 308 (311)
Q Consensus 246 VvAFQTRNPlHRaHe~L~k~~~~~ale~~-~~~~~LllhPLvG~t-K~dDvp~~vR~r~ye~ll~ 308 (311)
.+|.+.-||+-.+|-.++..|+...-|.+ |..=.=.+.|+.-.+ |.+-+|+..|++.-|+.-+
T Consensus 11 l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~ 75 (234)
T KOG3199|consen 11 LLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATE 75 (234)
T ss_pred EEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhc
Confidence 67888999999999999986543332442 111123567876544 7799999999999887654
No 106
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=31.82 E-value=62 Score=25.81 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHhcCCCCeEEEeCCCCcEEEEEEe
Q 021558 144 EQKRRIGESTRVALVDSDDNVVAILND 170 (311)
Q Consensus 144 e~a~~l~~g~~vaL~~~eG~~vAiL~V 170 (311)
+.++.++.|++|.+.. .|++||-|.=
T Consensus 16 ~lL~rV~aGEev~IT~-~G~PVArivp 41 (84)
T COG4118 16 ELLRRVRAGEEVIITK-RGRPVARLVP 41 (84)
T ss_pred HHHHHHhCCCEEEEee-CCeEEEEEee
Confidence 4456789999999986 8999999973
No 107
>PRK13760 putative RNA-associated protein; Provisional
Probab=28.04 E-value=36 Score=32.14 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=43.0
Q ss_pred EEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCC------CHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEee
Q 021558 138 VLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKH------PKEERIARTWGTTAPGLPYVDQAITYAGNWLIGG 210 (311)
Q Consensus 138 vL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~------Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG 210 (311)
...|+.+.+.+.+.|..+.|-+ +|.+++||.. -++++..++|||+|. --|...+-..|++-++.
T Consensus 20 EI~v~p~~v~~~R~g~~~~l~e-------Vl~~~~VF~n~~kG~~As~~~L~~~FGT~d~--~~i~~~IL~kGeiQlt~ 89 (231)
T PRK13760 20 EILVDPDLALKFKEGKDVDIED-------VLAVEEVFKDAKKGDKASEESLKKVFGTTDP--LEIAEEIIKKGEIQLTA 89 (231)
T ss_pred EEEECHHHHHHHHCCCCCCHHH-------HhccceEEecCccCCcCCHHHHHHHhCCCCH--HHHHHHHHhcCCccCCH
Confidence 4456788888888888777654 5666777776 236788999999983 34554444566554443
No 108
>PRK08395 fumarate hydratase; Provisional
Probab=27.97 E-value=60 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=19.8
Q ss_pred eeEEecCHHHHHhcCCCCeEEEe
Q 021558 136 PIVLAIDDEQKRRIGESTRVALV 158 (311)
Q Consensus 136 PIvL~v~~e~a~~l~~g~~vaL~ 158 (311)
-+.+++++|++++|+.||.|.|.
T Consensus 2 ~l~tPl~~e~i~~L~~GD~V~Ls 24 (162)
T PRK08395 2 KLKTPLSWEDVLKLKAGDVVYLS 24 (162)
T ss_pred eeeCCCCHHHHhhCCCCCEEEEE
Confidence 35667889999999999999985
No 109
>cd04498 hPOT1_OB2 hPOT1_OB2: A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB2) which cooperate to bind telomeric ssDNA. OB1 makes more extensive contact with the ssDNA than OB2. OB2 protects the 3' end of the ssDNA. hPOT1 is implicated in telomere length regulation.
Probab=27.78 E-value=65 Score=27.54 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=22.6
Q ss_pred cceeeEE-ecCHHHHHhcCCCCeEEEeC
Q 021558 133 MSVPIVL-AIDDEQKRRIGESTRVALVD 159 (311)
Q Consensus 133 ~piPIvL-~v~~e~a~~l~~g~~vaL~~ 159 (311)
|+|+|++ +.-.+.++.|++||-|.|.+
T Consensus 60 ~ti~It~yD~H~~~ar~lK~GdfV~L~N 87 (123)
T cd04498 60 LTIDILVYDNHVELAKSLKPGDFVRIYN 87 (123)
T ss_pred EEEEEEEEcchHHHHhhCCCCCEEEEEE
Confidence 6999987 66667788899999999975
No 110
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.15 E-value=9.9 Score=28.31 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=10.1
Q ss_pred CCeeecceeeEE
Q 021558 128 GSVVNMSVPIVL 139 (311)
Q Consensus 128 G~~~~~piPIvL 139 (311)
|..||+|+|++|
T Consensus 39 G~TWPmSfPv~l 50 (55)
T PF10753_consen 39 GLTWPMSFPVAL 50 (55)
T ss_pred HccCccccHHHH
Confidence 888999999865
No 111
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=26.57 E-value=1.9e+02 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.1
Q ss_pred ceEEEeeCCCCcchHHHHHHHHHHHHHHh
Q 021558 245 AVFAFQLRNPVHNGHALLMTDTRRRLLEM 273 (311)
Q Consensus 245 ~VvAFQTRNPlHRaHe~L~k~~~~~ale~ 273 (311)
.|+++=+-+-+|+||..|++.+.+.|-+.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~ 43 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARER 43 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhc
Confidence 68888899999999999998776665554
No 112
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=26.28 E-value=1.1e+02 Score=24.69 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=30.3
Q ss_pred eeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEEEeCcccCCC
Q 021558 136 PIVLAIDDEQKRRIGESTRVALVDSDDNVVAILNDIEIYKHP 177 (311)
Q Consensus 136 PIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL~V~eiy~~D 177 (311)
-++.....+....+++||.+.+.+.+ ++++++.|.++....
T Consensus 18 tat~r~~~~~~~~~k~Gd~~i~~~~~-~~~~~i~v~~V~~~~ 58 (105)
T cd06541 18 TIEIRSLDIYEQLPKAGDYLIILDGQ-QPLAIAEVVKVEIMP 58 (105)
T ss_pred EEEEEcchhcccCCCCCCEEEEecCC-CcEEEEEEEEEEEEE
Confidence 34444444444678999999999866 999999998876553
No 113
>PRK14578 elongation factor P; Provisional
Probab=25.81 E-value=41 Score=30.69 Aligned_cols=64 Identities=13% Similarity=0.011 Sum_probs=38.5
Q ss_pred CCeEEeChhhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCC
Q 021558 81 LPRIRLTKIDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDS 160 (311)
Q Consensus 81 lpsi~l~~~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~ 160 (311)
+....|+.++++-|-.=.+++ =||+.++|+|+- || .+.=.+.+.-|++|..+.+...
T Consensus 62 ve~a~ve~~~~qylY~dg~~~-----~FMD~etyEQ~~----------------i~--~~~~g~~~~fL~e~~~v~v~~~ 118 (187)
T PRK14578 62 VEEADFERHKGQFLYADGDRG-----VFMDLETYEQFE----------------ME--EDAFSAIAPFLLDGTEVQLGLF 118 (187)
T ss_pred EEEeEEEEeEeEEEEeCCCEE-----EEecCCCcEEEE----------------ec--HHHhhhHHhhccCCCEEEEEEE
Confidence 334566666655322223333 399999999973 12 1111233455889998887766
Q ss_pred CCcEEEE
Q 021558 161 DDNVVAI 167 (311)
Q Consensus 161 eG~~vAi 167 (311)
+|+++++
T Consensus 119 ~~~~i~v 125 (187)
T PRK14578 119 QGRMVNV 125 (187)
T ss_pred CCEEEEE
Confidence 8999985
No 114
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=25.75 E-value=84 Score=34.24 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=84.6
Q ss_pred hhHHHHHHHHhCCcCCCCCCCChhhhhhccccCCeecCCCCeeecceeeEEecCHHHHHhcCCCCeEEEeCCCCcEEEEE
Q 021558 89 IDLQWVHVLSEGWASPLSGFMRESEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDEQKRRIGESTRVALVDSDDNVVAIL 168 (311)
Q Consensus 89 ~~l~dLelL~~G~fSPL~GFM~e~dy~sVl~~~~mrL~dG~~~~~piPIvL~v~~e~a~~l~~g~~vaL~~~eG~~vAiL 168 (311)
-++.-.|.|-..+.-| .-|..+.||+.|| |+-.+.++.+. .|+-. ..-.+|.|--..|+++|+.
T Consensus 599 FqVAY~EFLrANGI~~-e~l~~q~dYqevl--NsQei~gDeLe------~Fakk-------E~qKEVvv~K~kGEiLGVV 662 (829)
T KOG3605|consen 599 FQVAYMEFLRANGIEP-EDLVSQMDYQEVL--NSQEIFGDELE------HFAKK-------ENQKEVVLEKHKGEILGVV 662 (829)
T ss_pred HHHHHHHHHHHcCCCc-hHhhhhcchhhcc--chhhhhccHHH------Hhhhh-------cccceeeeecccCceeeEE
Confidence 3566677776666656 6688999999999 88888888872 12221 2235677776789999999
Q ss_pred EeCcccCCCHH-HHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeEEEeccCCCCCCCccccCCHHHHHHHHHhcCCCceE
Q 021558 169 NDIEIYKHPKE-ERIARTWGTTAPGLPYVDQAITYAGNWLIGGDLEVLEPIKYHDGLDRFRLSPAQLRDEFSKRNADAVF 247 (311)
Q Consensus 169 ~V~eiy~~Dk~-~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v~~l~~~~~~d~f~~~rltP~e~R~~f~~~Gw~~Vv 247 (311)
.|++=|--=.. --+++ .-|=|-+. +.|...||-.+--|+-.. +-. |.-.-.+..++...-.+.|
T Consensus 663 iVESGWGSmLPTVViAn------mm~~GpAa---rsgkLnIGDQiiaING~S----LVG--LPLstcQs~Ik~~KnQT~V 727 (829)
T KOG3605|consen 663 IVESGWGSILPTVVIAN------MMHGGPAA---RSGKLNIGDQIMSINGTS----LVG--LPLSTCQSIIKGLKNQTAV 727 (829)
T ss_pred EEecCccccchHHHHHh------cccCChhh---hcCCccccceeEeecCce----ecc--ccHHHHHHHHhcccccceE
Confidence 99998843211 11111 12333332 577778887777777322 112 2223333445544444555
Q ss_pred EEe-eCC------CCcchHHHHH
Q 021558 248 AFQ-LRN------PVHNGHALLM 263 (311)
Q Consensus 248 AFQ-TRN------PlHRaHe~L~ 263 (311)
-|- -+= -+||-|..-|
T Consensus 728 kltiV~cpPV~~V~I~RPd~kyQ 750 (829)
T KOG3605|consen 728 KLNIVSCPPVTTVLIRRPDLRYQ 750 (829)
T ss_pred EEEEecCCCceEEEeecccchhh
Confidence 554 122 2466666543
No 115
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=24.61 E-value=2.8e+02 Score=24.79 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=28.5
Q ss_pred cceeeEEecCHHHHHhcCCC-----C-----eEEEeCCCCcEEEEEEeC
Q 021558 133 MSVPIVLAIDDEQKRRIGES-----T-----RVALVDSDDNVVAILNDI 171 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g-----~-----~vaL~~~eG~~vAiL~V~ 171 (311)
+++|++.|.+.+.++.++.- . .+-|+|++|++..+..-.
T Consensus 88 ~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~ 136 (203)
T cd03016 88 IPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYP 136 (203)
T ss_pred CceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecC
Confidence 46699999988888766532 1 367889999988877543
No 116
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=24.36 E-value=2.8e+02 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=31.5
Q ss_pred cceeeEEecCHHHHHhcCCC--------CeEEEeCCCCcEEEEEEeCcccCCCH
Q 021558 133 MSVPIVLAIDDEQKRRIGES--------TRVALVDSDDNVVAILNDIEIYKHPK 178 (311)
Q Consensus 133 ~piPIvL~v~~e~a~~l~~g--------~~vaL~~~eG~~vAiL~V~eiy~~Dk 178 (311)
+++|++.|.+.+.++.+..- -...|+|++|+++....-..-+..+.
T Consensus 93 ~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~ 146 (173)
T cd03015 93 INFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSV 146 (173)
T ss_pred cceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 35599999888888776532 25788899999988885333333343
No 117
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=24.13 E-value=1.6e+02 Score=30.95 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCCCeEEEeCCCCcEE----EEEEeCcccC-------CCHHHHHHHhhCCCCCCChhHHHHHHhcCCEEEeeeE-EEecc
Q 021558 150 GESTRVALVDSDDNVV----AILNDIEIYK-------HPKEERIARTWGTTAPGLPYVDQAITYAGNWLIGGDL-EVLEP 217 (311)
Q Consensus 150 ~~g~~vaL~~~eG~~v----AiL~V~eiy~-------~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~v-~~l~~ 217 (311)
-+|-++.++|.+|+++ |.|.+..-|. .|.++..+..|+. -.+-|-.-...+-|-+.+-|.. .+|+.
T Consensus 347 ~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~--~y~tGD~~~~DedGy~~i~GR~DDvI~v 424 (528)
T COG0365 347 LPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFGR--WYRTGDWAERDEDGYFWLHGRSDDVIKV 424 (528)
T ss_pred CCCceeEEECCCCCcCCCCceEEEEeCCCchhhhhhhCCHHHHHHHHhhc--eeecCceeEEccCCCEEEEeeccceEec
Confidence 4788999999777766 7999998766 5777777766652 1111111111233444455542 23432
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCC---------------CceEEEeeCCCCcchHHHHHHH
Q 021558 218 IKYHDGLDRFRLSPAQLRDEFSKRNA---------------DAVFAFQLRNPVHNGHALLMTD 265 (311)
Q Consensus 218 ~~~~d~f~~~rltP~e~R~~f~~~Gw---------------~~VvAFQTRNPlHRaHe~L~k~ 265 (311)
..+|+.|.|+...+.+.-. ..|+||.+=++=+... .|.+.
T Consensus 425 -------sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~e 479 (528)
T COG0365 425 -------SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEE 479 (528)
T ss_pred -------cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHH
Confidence 3689999999998875421 1278888655544544 55543
No 118
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=23.33 E-value=75 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=18.5
Q ss_pred CCeEEEeCCCCcEEEEEEeCccc
Q 021558 152 STRVALVDSDDNVVAILNDIEIY 174 (311)
Q Consensus 152 g~~vaL~~~eG~~vAiL~V~eiy 174 (311)
-+.+-++|.+|+++|+++..++.
T Consensus 30 ~~~~~V~d~~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 30 ISRLPVVDEDGKLVGIISRSDLL 52 (57)
T ss_dssp SSEEEEESTTSBEEEEEEHHHHH
T ss_pred CcEEEEEecCCEEEEEEEHHHHH
Confidence 45677787889999999987764
No 119
>PRK06842 fumarate hydratase; Provisional
Probab=22.69 E-value=89 Score=28.63 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.0
Q ss_pred eeEEecCHHHHHhcCCCCeEEEe
Q 021558 136 PIVLAIDDEQKRRIGESTRVALV 158 (311)
Q Consensus 136 PIvL~v~~e~a~~l~~g~~vaL~ 158 (311)
-+.+++++|++++|+.||.|.|.
T Consensus 4 ~l~tPl~~e~i~~L~vGD~V~Ls 26 (185)
T PRK06842 4 KITTPLTEEKVKDLKAGDSVLIS 26 (185)
T ss_pred EeeCCCCHHHHhhCCCCCEEEEe
Confidence 45677889999999999999995
No 120
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=22.61 E-value=82 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.3
Q ss_pred cccCCHHHHHHHHHhcCCCceEEEe--eCCCCcc
Q 021558 226 RFRLSPAQLRDEFSKRNADAVFAFQ--LRNPVHN 257 (311)
Q Consensus 226 ~~rltP~e~R~~f~~~Gw~~VvAFQ--TRNPlHR 257 (311)
+|-.-|.-+-+.+.+.|. -|.|| ||.|+|-
T Consensus 67 EfMy~Pl~lA~~Le~~g~--~V~~qSTTRSPI~~ 98 (155)
T PF12500_consen 67 EFMYLPLLLAEELEQAGA--DVRYQSTTRSPILP 98 (155)
T ss_pred hHHHHHHHHHHHHHhcCC--ceEEeCCCCCCcee
Confidence 566679999999999994 78999 8999998
No 121
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=22.40 E-value=1.1e+02 Score=24.56 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=21.9
Q ss_pred eeEEecCHHHHHhcCCCCeEEEeCCC-CcEEEEEE
Q 021558 136 PIVLAIDDEQKRRIGESTRVALVDSD-DNVVAILN 169 (311)
Q Consensus 136 PIvL~v~~e~a~~l~~g~~vaL~~~e-G~~vAiL~ 169 (311)
|=+.+++. .+++||.|++.+.+ |+++|+=.
T Consensus 52 pGV~~~~~----~~~~gd~V~I~~~~~~~~iavG~ 82 (107)
T TIGR00451 52 PGIVDADE----DIKEGDDVVVVDENKDRPLAVGI 82 (107)
T ss_pred CeeEeCCC----CcCCCCEEEEEECCCCeEEEEEE
Confidence 54555554 46789999998866 88888854
No 122
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=21.98 E-value=3.1e+02 Score=28.14 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=36.7
Q ss_pred HhcCCCceEEEe--eCCCCcchHHHHHHHHHHHHHHhcCCCCcEEEecc-----cCCC-CCCCCChHHHHHHHHHH
Q 021558 239 SKRNADAVFAFQ--LRNPVHNGHALLMTDTRRRLLEMGYQNPILLLHPL-----GGYT-KADDVPLSWRMKQHEKV 306 (311)
Q Consensus 239 ~~~Gw~~VvAFQ--TRNPlHRaHe~L~k~~~~~ale~~~~~~~LllhPL-----vG~t-K~dDvp~~vR~r~ye~l 306 (311)
+++.-+.+..|- +-+++|.||..+++ +|.+.| +-| +.=+ +-.. .+-=++.+-|++..+++
T Consensus 47 ~~~~~~~~rV~~~G~FDllH~GH~~~L~----qAk~lG---d~L-IVGV~SDe~i~~~Kg~PV~~~eER~~~v~al 114 (418)
T PLN02406 47 KKKKKKPVRVYMDGCFDMMHYGHANALR----QARALG---DEL-VVGVVSDEEIIANKGPPVTPMHERMIMVSGV 114 (418)
T ss_pred cccCCCceEEEEcCeeCCCCHHHHHHHH----HHHHhC---CEE-EEEEecChhhhccCCCCcCCHHHHHHHHHhc
Confidence 333444455554 89999999999986 566665 323 2111 1112 23456789998888763
No 123
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=20.97 E-value=94 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.4
Q ss_pred eeeEEecCHHHHHhcCCCCeEEEe
Q 021558 135 VPIVLAIDDEQKRRIGESTRVALV 158 (311)
Q Consensus 135 iPIvL~v~~e~a~~l~~g~~vaL~ 158 (311)
.-+.+++++|++++|+.||.|.|.
T Consensus 4 ~~l~tPl~~e~i~~L~vGD~V~Ls 27 (204)
T PRK08228 4 KILTTPIKDEDLQDIKVGDVIYLT 27 (204)
T ss_pred eEecCCCCHHHHhhCCCCCEEEEE
Confidence 356677889999999999999985
No 124
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=20.58 E-value=2.3e+02 Score=26.18 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=51.2
Q ss_pred cCCccCCCC-Cce--eecccCchhHHHHHHHhccCCeEEeChhhHHHHHHHHhCC-----cCCCCCCCChhhhhhccc--
Q 021558 50 RAGLIEPDG-GKL--TELIVDKSLRDVRKREAATLPRIRLTKIDLQWVHVLSEGW-----ASPLSGFMRESEFLQTLH-- 119 (311)
Q Consensus 50 ~~~li~PhG-g~L--v~l~v~~~~~~~l~~ea~~lpsi~l~~~~l~dLelL~~G~-----fSPL~GFM~e~dy~sVl~-- 119 (311)
+....-||| |+- |.++.+++..++ ++..+.+ .++.+++. +++.+|+ +.-.+=|+...++-..+-
T Consensus 47 rg~v~LPhg~gk~~kV~v~~~~~~~~~--Ak~aGad--~v~~e~l~--~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~ 120 (214)
T PTZ00225 47 SGSLKLPNVCRPRMTVCLLCDLVHEDI--AKKEGVP--TMNQEELK--KLNKNKKLVKKMCNQYDAFLCSESIIKTVPRL 120 (214)
T ss_pred ceeEECCCCCCCCcEEEEECChHHHHH--HHHCCCC--EECHHHHH--HHHhccHHHHHHHhhCCEEEECHHHHHhhhhh
Confidence 334567999 554 334445554444 3445666 66677775 4467775 345566776666655430
Q ss_pred cCCeecCCCCeeecceeeE--EecCHHHHHhcCCCCeEEEeC
Q 021558 120 FNSLRLDDGSVVNMSVPIV--LAIDDEQKRRIGESTRVALVD 159 (311)
Q Consensus 120 ~~~mrL~dG~~~~~piPIv--L~v~~e~a~~l~~g~~vaL~~ 159 (311)
.-.-.+++|.. |.|+. -++. +..+.++. .+..+.
T Consensus 121 LGp~~~p~gK~---P~~~~~~~dl~-~~i~~~k~--~v~~r~ 156 (214)
T PTZ00225 121 VGPHMHRMGKF---PTVCSPSESLP-DKVVELRS--TVKFQL 156 (214)
T ss_pred cCCCCCcCCCC---CcccCCccCHH-HHHHHHhh--eeEEEe
Confidence 01222467774 44432 2332 22334444 577764
No 125
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=20.09 E-value=5.8e+02 Score=25.81 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCceEEEe-eCCCCcchHHHHHHHHHHHHHHhc
Q 021558 231 PAQLRDEFSKRNADAVFAFQ-LRNPVHNGHALLMTDTRRRLLEMG 274 (311)
Q Consensus 231 P~e~R~~f~~~Gw~~VvAFQ-TRNPlHRaHe~L~k~~~~~ale~~ 274 (311)
..++++.++++...-.+||+ |...+|-||.--+. .++...+.|
T Consensus 22 ~~~l~~~l~~~~~~vy~G~dPTg~slHlGhlv~l~-~l~~lQ~~G 65 (408)
T PRK05912 22 EEELEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLL-KLRRFQDAG 65 (408)
T ss_pred HHHHHHHhhCCCCEEEEeecCCCCCccHHhHHHHH-HHHHHHHCC
Confidence 77888888877777799999 77779999965333 234444554
Done!