Query 021559
Match_columns 311
No_of_seqs 237 out of 1288
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 6.1E-98 1E-102 712.8 26.6 310 1-311 1-325 (347)
2 PLN03019 carbonic anhydrase 100.0 3E-70 6.6E-75 520.0 23.2 247 64-311 71-319 (330)
3 PLN00416 carbonate dehydratase 100.0 4.6E-65 9.9E-70 474.5 22.3 245 66-311 1-246 (258)
4 PLN03006 carbonate dehydratase 100.0 9.6E-62 2.1E-66 458.2 19.8 226 84-311 49-276 (301)
5 cd00884 beta_CA_cladeB Carboni 100.0 4E-53 8.7E-58 379.0 16.7 189 121-310 1-190 (190)
6 PLN02154 carbonic anhydrase 100.0 1.3E-52 2.8E-57 394.1 20.3 201 110-311 71-271 (290)
7 PRK10437 carbonic anhydrase; P 100.0 3.3E-52 7.1E-57 380.3 18.8 189 114-311 3-192 (220)
8 PRK15219 carbonic anhydrase; P 100.0 1.1E-51 2.5E-56 382.2 18.9 189 109-310 51-244 (245)
9 cd00883 beta_CA_cladeA Carboni 100.0 7.2E-52 1.6E-56 368.4 16.7 179 122-309 1-181 (182)
10 KOG1578 Predicted carbonic anh 100.0 1.6E-52 3.5E-57 386.9 11.7 257 43-311 2-258 (276)
11 COG0288 CynT Carbonic anhydras 100.0 8.5E-51 1.8E-55 368.3 16.8 192 113-311 2-196 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 9.9E-47 2.1E-51 327.6 16.9 150 111-310 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 4E-43 8.6E-48 301.6 12.4 152 148-307 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 1.6E-41 3.4E-46 283.1 14.5 119 144-310 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 2.3E-38 4.9E-43 271.3 13.7 141 144-309 1-141 (142)
16 KOG1578 Predicted carbonic anh 98.4 1.1E-08 2.4E-13 95.9 -5.6 186 118-308 3-247 (276)
17 TIGR01838 PHA_synth_I poly(R)- 70.6 67 0.0014 33.6 12.3 163 49-219 46-274 (532)
18 PF12778 PXPV: PXPV repeat (3 64.5 3.5 7.5E-05 24.8 0.9 18 41-58 4-21 (22)
19 PF10070 DUF2309: Uncharacteri 61.0 14 0.00031 40.3 5.4 35 277-311 540-580 (788)
20 COG1254 AcyP Acylphosphatases 46.9 14 0.0003 29.7 1.9 20 291-310 28-47 (92)
21 PRK14066 exodeoxyribonuclease 43.4 39 0.00085 26.2 3.9 32 66-97 1-34 (75)
22 TIGR02742 TrbC_Ftype type-F co 40.6 52 0.0011 28.1 4.6 56 130-204 57-112 (130)
23 PF08822 DUF1804: Protein of u 34.3 96 0.0021 27.7 5.4 58 68-127 105-162 (165)
24 PF00009 GTP_EFTU: Elongation 34.3 24 0.00053 30.6 1.7 15 204-218 2-16 (188)
25 COG0279 GmhA Phosphoheptose is 33.5 2.2E+02 0.0048 25.7 7.5 65 148-223 83-154 (176)
26 PRK11181 23S rRNA (guanosine-2 33.2 2.4E+02 0.0052 26.1 8.2 72 133-217 54-133 (244)
27 TIGR01839 PHA_synth_II poly(R) 32.8 5.5E+02 0.012 27.3 11.5 155 65-222 91-303 (560)
28 PF00355 Rieske: Rieske [2Fe-2 31.4 18 0.0004 27.9 0.4 15 294-308 65-79 (97)
29 cd01891 TypA_BipA TypA (tyrosi 31.1 31 0.00068 29.9 1.9 14 204-217 1-14 (194)
30 PRK09778 putative antitoxin of 30.1 67 0.0015 26.2 3.4 74 12-104 6-81 (97)
31 KOG0025 Zn2+-binding dehydroge 28.9 81 0.0018 31.1 4.3 42 161-213 153-194 (354)
32 PRK14068 exodeoxyribonuclease 28.3 92 0.002 24.2 3.8 29 68-96 5-35 (76)
33 PF00561 Abhydrolase_1: alpha/ 28.0 53 0.0012 27.8 2.7 31 190-221 28-58 (230)
34 COG1116 TauB ABC-type nitrate/ 28.0 36 0.00078 32.3 1.7 14 205-218 29-42 (248)
35 PRK14064 exodeoxyribonuclease 26.5 1E+02 0.0023 23.8 3.8 22 69-90 6-29 (75)
36 PRK11440 putative hydrolase; P 26.3 1.3E+02 0.0027 26.3 4.8 47 164-220 90-136 (188)
37 cd03528 Rieske_RO_ferredoxin R 25.8 26 0.00057 27.1 0.4 14 294-307 61-74 (98)
38 cd01890 LepA LepA subfamily. 25.8 39 0.00084 28.3 1.4 12 206-217 1-12 (179)
39 cd03478 Rieske_AIFL_N AIFL (ap 24.5 25 0.00054 27.3 -0.0 15 294-308 60-74 (95)
40 PF05952 ComX: Bacillus compet 24.4 70 0.0015 23.7 2.4 25 274-298 5-29 (57)
41 PTZ00119 40S ribosomal protein 24.3 3.2E+02 0.007 26.6 7.3 100 61-160 74-203 (302)
42 PF08184 Cuticle_2: Cuticle pr 23.7 38 0.00083 24.3 0.8 13 296-308 7-19 (59)
43 PRK14445 acylphosphatase; Prov 23.6 86 0.0019 24.7 2.9 19 291-309 28-46 (91)
44 KOG2781 U3 small nucleolar rib 23.3 1.8E+02 0.0038 28.0 5.3 68 140-217 77-144 (290)
45 cd04160 Arfrp1 Arfrp1 subfamil 23.1 45 0.00097 27.5 1.3 12 207-218 1-12 (167)
46 TIGR01280 xseB exodeoxyribonuc 22.7 1.6E+02 0.0035 22.1 4.1 25 70-94 2-28 (67)
47 PF14618 DUF4452: Domain of un 22.6 65 0.0014 28.7 2.2 62 6-67 77-148 (165)
48 PRK14440 acylphosphatase; Prov 22.0 60 0.0013 25.7 1.8 20 291-310 27-46 (90)
49 cd04167 Snu114p Snu114p subfam 21.9 51 0.0011 29.3 1.5 13 206-218 1-13 (213)
50 cd04169 RF3 RF3 subfamily. Pe 21.8 58 0.0013 30.6 1.9 14 205-218 2-15 (267)
51 cd03548 Rieske_RO_Alpha_OMO_CA 21.7 45 0.00098 28.0 1.1 15 294-308 77-91 (136)
52 PRK14441 acylphosphatase; Prov 21.4 1.1E+02 0.0024 24.3 3.1 20 291-310 29-48 (93)
53 PRK14432 acylphosphatase; Prov 21.4 60 0.0013 25.9 1.6 18 292-309 27-44 (93)
54 PF01764 Lipase_3: Lipase (cla 21.3 1.1E+02 0.0024 24.6 3.3 32 191-222 49-80 (140)
55 TIGR02377 MocE_fam_FeS Rieske 21.2 39 0.00084 26.8 0.5 14 294-307 63-76 (101)
56 cd01878 HflX HflX subfamily. 21.0 64 0.0014 28.0 1.9 16 203-218 39-54 (204)
57 PRK00977 exodeoxyribonuclease 20.9 1.4E+02 0.003 23.3 3.6 32 64-95 5-38 (80)
58 PF04019 DUF359: Protein of un 20.6 3.8E+02 0.0083 22.5 6.4 78 140-225 6-83 (121)
59 cd01887 IF2_eIF5B IF2/eIF5B (i 20.5 62 0.0013 26.5 1.7 13 206-218 1-13 (168)
60 TIGR02378 nirD_assim_sml nitri 20.3 39 0.00084 26.8 0.3 14 294-307 68-81 (105)
61 PRK09511 nirD nitrite reductas 20.0 34 0.00075 27.7 -0.0 14 294-307 71-84 (108)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=6.1e-98 Score=712.76 Aligned_cols=310 Identities=77% Similarity=1.207 Sum_probs=285.5
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEeecC------------CCCCCCcccCCccccCCCcccCcchhhHhh
Q 021559 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLNS------------PASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (311)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (311)
|||+||||||++|++|+++++++ .++|| ++||+|++ ++++|+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 89999961 133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 021559 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (311)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (311)
++|||+||++|+|||+||++|+.+|++||+++|+||++.. ...+++++++|++||++|+.+++.+++++|++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999632 25689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccc
Q 021559 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (311)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~ 225 (311)
|+++||+||||||+|+.+||++|||+||+||+||+|+++|...+++++++|||||.+|+|++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876555678899999999999999999999999999999876
Q ss_pred cCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEccCc
Q 021559 226 TFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 305 (311)
Q Consensus 226 ~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~TG 305 (311)
.+++....++|++|+..+.|++.++..+.+...+.+++..|+++||++||++|++||+|++++++|+|.|||||||+.||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 55454556899999999999988776655555677777778899999999999999999999999999999999999999
Q ss_pred eEEecC
Q 021559 306 SFELWG 311 (311)
Q Consensus 306 ~v~~~~ 311 (311)
+|++|+
T Consensus 320 ~V~~l~ 325 (347)
T PLN03014 320 AFELWG 325 (347)
T ss_pred eEEEec
Confidence 999986
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3e-70 Score=520.01 Aligned_cols=247 Identities=80% Similarity=1.279 Sum_probs=223.3
Q ss_pred hHhhhhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 021559 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (311)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La 141 (311)
++|+++|||+||++|+|||+||++|+.+||+||+++|+||++.. .+++++++++|++||++|+.+++.+++++|++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 45889999999999999999999999999999999999999642 3568999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccc
Q 021559 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (311)
Q Consensus 142 ~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~A 221 (311)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999987666678999999999999999999999999999999
Q ss_pred cccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEE
Q 021559 222 LMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYD 301 (311)
Q Consensus 222 a~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YD 301 (311)
+++...++....++|++|+..+.|++.++....+...+.+++..+++ ||++||++|++||+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98765555455689999999999998766554444455555555665 99999999999999999999999999999999
Q ss_pred ccCceEEecC
Q 021559 302 FVNGSFELWG 311 (311)
Q Consensus 302 i~TG~v~~~~ 311 (311)
+.||+|++|+
T Consensus 310 l~TG~V~~~~ 319 (330)
T PLN03019 310 FVNGSFELWE 319 (330)
T ss_pred CCCceEEEEc
Confidence 9999999996
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=4.6e-65 Score=474.48 Aligned_cols=245 Identities=62% Similarity=1.064 Sum_probs=220.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 021559 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (311)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (311)
|+.+||+++|.+|.+||+.+..++..+++++.-++++|++.. .+|.+++++|++||+||+.+++.+++++|++|+.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999885 7899999999999999999998889999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccc
Q 021559 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (311)
Q Consensus 146 Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~ 225 (311)
|+++|||||||||+|+.|||.+|||+||+||+||+|+++|...++++.+|||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876445678899999999999999999999999999999864
Q ss_pred cCCC-CCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEccC
Q 021559 226 TFDG-NNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 304 (311)
Q Consensus 226 ~~~~-~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~T 304 (311)
.+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|++.|||||||+.|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 122468999999888988765544444455565667888999999999999999999999999999999999999
Q ss_pred ceEEecC
Q 021559 305 GSFELWG 311 (311)
Q Consensus 305 G~v~~~~ 311 (311)
|+|++|+
T Consensus 240 G~v~~~~ 246 (258)
T PLN00416 240 GTFDLWE 246 (258)
T ss_pred ceEEEec
Confidence 9999985
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=9.6e-62 Score=458.23 Aligned_cols=226 Identities=43% Similarity=0.801 Sum_probs=202.5
Q ss_pred hhcCchhhHhhhhHHHHHHhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 021559 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (311)
Q Consensus 84 ~~~~~~~~a~~~i~~~~~~l~~~~--~~~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe 161 (311)
+..+|..+|++|++++|+||++.. ...+.+++++|++||.+|+..++.+++++|++|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456889999999999999999754 234789999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHH
Q 021559 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVK 241 (311)
Q Consensus 162 ~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~ 241 (311)
.|||++|||+|||||+||+|++++... .++.++|||||.+|||++|||||||+||||+|+++..+.+ ...++|++|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g-~~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEG-DSRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccC-CchhHHHHHHH
Confidence 999999999999999999999987532 4688999999999999999999999999999998765544 35679999999
Q ss_pred hccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEccCceEEecC
Q 021559 242 IGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 242 ~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~TG~v~~~~ 311 (311)
.+.|++..+........+++++..++++||++||++|++||+|++++++|+|.|||||||+.||.++.|+
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~ 276 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWT 276 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEec
Confidence 8888877665433344567777889999999999999999999999999999999999999999999996
No 5
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4e-53 Score=379.01 Aligned_cols=189 Identities=51% Similarity=0.812 Sum_probs=165.8
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCc-cchhhHHHHHHH
Q 021559 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (311)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~-~~~~v~aSLEyA 199 (311)
||++|++..+.+++++|++|+.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.. .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987532 235688999999
Q ss_pred HHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhh
Q 021559 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLL 279 (311)
Q Consensus 200 V~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~ 279 (311)
|.+|+|++|||||||+||||+|++.... +....+++..|+..+.|+........+..+..+..+.+++.||..|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986433 123356899999998998876655433334445567788999999999999
Q ss_pred hChHHHhhhcCCceEEEEEEEEccCceEEec
Q 021559 280 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 280 s~P~V~~~v~~g~L~V~G~~YDi~TG~v~~~ 310 (311)
++|+|++++++|+|.|||||||+.||+|+.|
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999976
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=1.3e-52 Score=394.14 Aligned_cols=201 Identities=41% Similarity=0.764 Sum_probs=174.1
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccc
Q 021559 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (311)
Q Consensus 110 ~p~~~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~ 189 (311)
+..+.+++|++||.+|+.+++.+++++|++|+.||+|+++||+||||||+|+.|||.+|||+||+||+||+|++++.. +
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999997642 2
Q ss_pred hhhHHHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHH
Q 021559 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKE 269 (311)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~ 269 (311)
.++.++|||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.+.....+...+++.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999999986432222345789999987776654433222233445566678899
Q ss_pred HHHHHHHHhhhChHHHhhhcCCceEEEEEEEEccCceEEecC
Q 021559 270 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 270 nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~TG~v~~~~ 311 (311)
||+.||++|++||+|++++++|+|+|||||||+.||.++.|+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~ 271 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWR 271 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEec
Confidence 999999999999999999999999999999999999999986
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.3e-52 Score=380.29 Aligned_cols=189 Identities=25% Similarity=0.397 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhH
Q 021559 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (311)
Q Consensus 114 ~le~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~ 193 (311)
.+++|++||++|++..+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4789999999999998888999999999999999999999999999999999999999999999999998654 478
Q ss_pred HHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHH
Q 021559 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNV 273 (311)
Q Consensus 194 aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~ 273 (311)
++|||||.+|||++|||||||+||||+|+++.. ..+++..|+..+.|++..........+..+....++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998642 236899999998888765443333334445567788999999
Q ss_pred HHHHhhhChHHHhhhcCC-ceEEEEEEEEccCceEEecC
Q 021559 274 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 274 qv~~L~s~P~V~~~v~~g-~L~V~G~~YDi~TG~v~~~~ 311 (311)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~ 192 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLD 192 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEec
Confidence 999999999999999999 69999999999999999875
No 8
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.1e-51 Score=382.20 Aligned_cols=189 Identities=22% Similarity=0.326 Sum_probs=162.1
Q ss_pred CChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCC
Q 021559 109 TKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYD 185 (311)
Q Consensus 109 ~~p~~~le~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d 185 (311)
.+|.+++++|++||+||+++.+. +++++ .++++||+|+++|||||||||+||.+||.+|||+||+||+||+|++
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~-- 127 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND-- 127 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc--
Confidence 78999999999999999998865 44433 2467899999999999999999999999999999999999999965
Q ss_pred CccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhc-CCCCccccch
Q 021559 186 QTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCT 264 (311)
Q Consensus 186 ~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~~~~~ 264 (311)
.+.+||||||.+|||++|||||||+||||+|+++... .+++..|+..+.|++....... ...+..+...
T Consensus 128 -----~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~ 197 (245)
T PRK15219 128 -----DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVD 197 (245)
T ss_pred -----chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHH
Confidence 2678999999999999999999999999999986432 4689999999999887543211 1112334556
Q ss_pred HHHHHHHHHHHHHhhh-ChHHHhhhcCCceEEEEEEEEccCceEEec
Q 021559 265 YCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 265 ~~~~~nV~~qv~~L~s-~P~V~~~v~~g~L~V~G~~YDi~TG~v~~~ 310 (311)
.++++||+.|+++|++ +|++++++++|+|+||||+||+.||+|+++
T Consensus 198 ~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 198 AVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 7889999999999986 899999999999999999999999999986
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.2e-52 Score=368.36 Aligned_cols=179 Identities=31% Similarity=0.506 Sum_probs=156.9
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHH
Q 021559 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (311)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~ 201 (311)
|++|+++++.++|++|++|+.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998754 47899999999
Q ss_pred hcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCC-CccccchHHHHHHHHHHHHHhhh
Q 021559 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDK-PFGDQCTYCEKEAVNVSLSNLLT 280 (311)
Q Consensus 202 ~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~s 280 (311)
+|||++|||||||+||||+|+++.. ..+++.+|+....++........... +..+....++++||+.|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987642 24689999998877665433222221 23344567889999999999999
Q ss_pred ChHHHhhhcC-CceEEEEEEEEccCceEEe
Q 021559 281 YPFVREGLVN-KTLALKGGYYDFVNGSFEL 309 (311)
Q Consensus 281 ~P~V~~~v~~-g~L~V~G~~YDi~TG~v~~ 309 (311)
+|+|++++++ |+|.||||+||+.||+|+.
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~ 181 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRD 181 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEe
Confidence 9999999999 8999999999999999975
No 10
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-52 Score=386.93 Aligned_cols=257 Identities=46% Similarity=0.734 Sum_probs=244.7
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCCCCChHHHHHHHHHHH
Q 021559 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (311)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~~~~p~~~le~Ll~GN 122 (311)
.|+|+.+.|..+.+...+.+..||..++|+.++..+.++|.++.++ +|+++++++|++ .+.+++|+++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998889999999999999999999999999 899999999983 47899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHh
Q 021559 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (311)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~ 202 (311)
..|.++++.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|++||++|+++|+|..++.+++|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888778899999999999
Q ss_pred cCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhCh
Q 021559 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYP 282 (311)
Q Consensus 203 L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P 282 (311)
|+|++|+||||++|||++++|....++. ...|+++|+.+..+++..++++.....+.+||..|+.+++++++.+|.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999999877665 678999999999999999998888899999999999999999999999999
Q ss_pred HHHhhhcCCceEEEEEEEEccCceEEecC
Q 021559 283 FVREGLVNKTLALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 283 ~V~~~v~~g~L~V~G~~YDi~TG~v~~~~ 311 (311)
|+++++.+|.+++||++||+..|.+++|+
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ 258 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWE 258 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEE
Confidence 99999999999999999999999999994
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-51 Score=368.29 Aligned_cols=192 Identities=33% Similarity=0.528 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchh
Q 021559 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (311)
Q Consensus 113 ~~le~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~ 191 (311)
+.+++|++||++|.++.+..++.+|+.|+ .+|+|+++|||||||||+||.+||.+|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888899998876 56999999999999999999999999999999999999999875 35
Q ss_pred hHHHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCcc-ccchHHHHHH
Q 021559 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFG-DQCTYCEKEA 270 (311)
Q Consensus 192 v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 270 (311)
+++|||||+.+|||++|||||||+|||++|++.....+.. .+.+|+....+.........+..... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8999999999999999999999999999999876554322 68999987766665444332222222 4445667899
Q ss_pred HHHHHHHhhhChHHHhhhcCCc-eEEEEEEEEccCceEEecC
Q 021559 271 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 271 V~~qv~~L~s~P~V~~~v~~g~-L~V~G~~YDi~TG~v~~~~ 311 (311)
|++|+++|+++|.|++++..++ |.||||+||+.||+++.++
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~ 196 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVD 196 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEe
Confidence 9999999999999999988877 9999999999999998764
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9.9e-47 Score=327.57 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCc
Q 021559 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (311)
Q Consensus 111 p~~~le~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~ 187 (311)
|.+++++|++||++|.+++... +++.|.+++++|+|+++||||||||++|+.+||.+|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5789999999999999876431 256788999999999999999999999999999999999999999999975
Q ss_pred cchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHH
Q 021559 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCE 267 (311)
Q Consensus 188 ~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~ 267 (311)
++.+|||||+.+|||++|||||||+||+++++ ++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37789999999999999999999999998864 35
Q ss_pred HHHHHHHHHHhhhChHHHh-hhcCCceEEEEEEEEccCceEEec
Q 021559 268 KEAVNVSLSNLLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 268 ~~nV~~qv~~L~s~P~V~~-~v~~g~L~V~G~~YDi~TG~v~~~ 310 (311)
++||+.|+++|+++|+|++ ++++|++.||||+||+.||+++++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 7899999999999999988 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=4e-43 Score=301.65 Aligned_cols=152 Identities=34% Similarity=0.564 Sum_probs=121.9
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccccccC
Q 021559 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (311)
Q Consensus 148 ~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~ 227 (311)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++++|||||+.+|||++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998764 46889999999999999999999999999998765321
Q ss_pred CCCCCchhHHHHHHhccchhhhhhhhc-CCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEccCce
Q 021559 228 DGNNSTDFIEDWVKIGIPAKSKVLTEH-GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 306 (311)
Q Consensus 228 ~~~~~~~~I~~wl~~~~pa~~~~~~~~-~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~TG~ 306 (311)
..+.+++|++...|+......+. ......+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34689999998888876532221 2211112223447899999999999999999999999999999999999998
Q ss_pred E
Q 021559 307 F 307 (311)
Q Consensus 307 v 307 (311)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.6e-41 Score=283.14 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=112.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccc
Q 021559 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (311)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~ 223 (311)
|+|+++||||||||++|+.+||++|||+||+||+||+|++++ .++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 799999999999999999999999999999999999999864 35889999999999999999999999999875
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEcc
Q 021559 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (311)
Q Consensus 224 ~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~ 303 (311)
..++||++|+++|+++|+++++++++++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 34689999999999999999999999999999999999
Q ss_pred CceEEec
Q 021559 304 NGSFELW 310 (311)
Q Consensus 304 TG~v~~~ 310 (311)
||++++|
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999976
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.3e-38 Score=271.33 Aligned_cols=141 Identities=23% Similarity=0.280 Sum_probs=112.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcccccc
Q 021559 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (311)
Q Consensus 144 Q~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~ 223 (311)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++|||||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 4679999999999999999999999999999999999986 377899999999999999999999999999864
Q ss_pred cccCCCCCCchhHHHHHHhccchhhhhhhhcCCCCccccchHHHHHHHHHHHHHhhhChHHHhhhcCCceEEEEEEEEcc
Q 021559 224 SFTFDGNNSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFV 303 (311)
Q Consensus 224 ~~~~~~~~~~~~I~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~s~P~V~~~v~~g~L~V~G~~YDi~ 303 (311)
+ .+..|+............ ...........+++||++|+++|+++|+|+ .+++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~-----~~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIP-----DDVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCcc-----CCCEEEEEEEECC
Confidence 3 245566542211100000 011111123356899999999999999999 4899999999999
Q ss_pred CceEEe
Q 021559 304 NGSFEL 309 (311)
Q Consensus 304 TG~v~~ 309 (311)
||+++.
T Consensus 136 tG~v~~ 141 (142)
T cd03379 136 TGKLTE 141 (142)
T ss_pred CCEEEe
Confidence 999985
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.36 E-value=1.1e-08 Score=95.92 Aligned_cols=186 Identities=22% Similarity=0.277 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEecccccC
Q 021559 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (311)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~i----------------fg~~pGD~FVvRNaGN~V 181 (311)
|+.|..+|+.....+ +-+++.+-++|.+..++|+|||+-|... +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677888888765432 2256777899999999999999999877 667899999999999999
Q ss_pred CCCCCccchhh-------HHHHHHHHHhcCccEEEEeccCCCCcccccccccC--C---CCCCchhHHHHHHhccc-hh-
Q 021559 182 PPYDQTKYAGV-------GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--D---GNNSTDFIEDWVKIGIP-AK- 247 (311)
Q Consensus 182 ~~~d~~~~~~v-------~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa~~~~~--~---~~~~~~~I~~wl~~~~p-a~- 247 (311)
+.... |... .++|+.|+..-...||+||||++|-+++....... + .......++.|+....- .+
T Consensus 80 ~~p~~--f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIi 157 (276)
T KOG1578|consen 80 PNPTL--FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENII 157 (276)
T ss_pred CChhh--hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEE
Confidence 86422 1111 13577777788889999999999999997655432 1 11223578999864211 00
Q ss_pred -------------hhhhhhcCCCCccc-c--c---------hHHHHHHHHHHHHHhhhChHHH--hhhcCCceEEEE--E
Q 021559 248 -------------SKVLTEHGDKPFGD-Q--C---------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--G 298 (311)
Q Consensus 248 -------------~~~~~~~~~~~~~~-~--~---------~~~~~~nV~~qv~~L~s~P~V~--~~v~~g~L~V~G--~ 298 (311)
.....+-+..+|.+ | . ..+...|..+|.+|..++.+.. ..+......++| -
T Consensus 158 v~ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k 237 (276)
T KOG1578|consen 158 VIGHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVK 237 (276)
T ss_pred EeccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhh
Confidence 00011111112221 1 0 1122346678888888877776 455555555555 5
Q ss_pred EEEccCceEE
Q 021559 299 YYDFVNGSFE 308 (311)
Q Consensus 299 ~YDi~TG~v~ 308 (311)
+.+...|...
T Consensus 238 ~~l~~~G~~Y 247 (276)
T KOG1578|consen 238 GFLQVHGGYY 247 (276)
T ss_pred cceeeeeeeE
Confidence 5555555443
No 17
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=70.64 E-value=67 Score=33.61 Aligned_cols=163 Identities=23% Similarity=0.283 Sum_probs=92.9
Q ss_pred ccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCCC------CChHHHHH------
Q 021559 49 PVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD------TKAFDSVE------ 116 (311)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~~------~~p~~~le------ 116 (311)
.=|++|+===+|. -++..++|--+-.-+..++.+-+++......++...++++-..-+ ..| ++++
T Consensus 46 ~RF~~~~W~~~~~--~~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP-~~~~~~~~t~ 122 (532)
T TIGR01838 46 RRFASPAWSSHPF--FDFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNP-EALRLTVETQ 122 (532)
T ss_pred CCCCCchhccChH--HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCH-HHHHHHHHcC
Confidence 3466554222222 467788888777888888888888888888888888877754321 234 3333
Q ss_pred --HHHHHHHHHHhhhc---------cCChhhHHhhh-cCC--------------------------CCcEEEEeecCCCC
Q 021559 117 --RIKEGFIHFKREKY---------EKNPALYSELA-KGQ--------------------------SPKYMVFACSDSRV 158 (311)
Q Consensus 117 --~Ll~GN~rF~~~~~---------~~~p~~~~~La-~gQ--------------------------~Pk~lVItCsDSRV 158 (311)
.|++|-+.|.+... ..+.+.|+--. -++ .|-.+|=+|.
T Consensus 123 g~~l~~G~~~~~~D~~~~~~~~~i~~~~~~~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i---- 198 (532)
T TIGR01838 123 GESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWI---- 198 (532)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCCCCCCccceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECccc----
Confidence 47788888876431 12223232100 122 3333333321
Q ss_pred ChhhhcCCCCC------------ceEEE--ecccccCCCCCCccc--hhhHHHHHHHHHhcCccEEEEeccCCCCcc
Q 021559 159 CPSHVLDFQPG------------EAFVV--RNVANIVPPYDQTKY--AGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (311)
Q Consensus 159 ~Pe~ifg~~pG------------D~FVv--RNaGN~V~~~d~~~~--~~v~aSLEyAV~~L~V~~IVV~GHS~CGav 219 (311)
.-.-|||+.|| ++|++ ||.|---.+.....| ..+.++|++...++|.+.|.++||+ .||+
T Consensus 199 ~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~c-mGGt 274 (532)
T TIGR01838 199 NKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYC-IGGT 274 (532)
T ss_pred ccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEEC-cCcH
Confidence 12235565443 34443 666533222111122 3467788888889999999999994 5554
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=64.54 E-value=3.5 Score=24.76 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.6
Q ss_pred CCCcccCCccccCCCccc
Q 021559 41 PPSLIRNEPVFAAPAPII 58 (311)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (311)
.|-.++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=61.05 E-value=14 Score=40.34 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=25.3
Q ss_pred HhhhChHHHhhhcCC------ceEEEEEEEEccCceEEecC
Q 021559 277 NLLTYPFVREGLVNK------TLALKGGYYDFVNGSFELWG 311 (311)
Q Consensus 277 ~L~s~P~V~~~v~~g------~L~V~G~~YDi~TG~v~~~~ 311 (311)
.|...|-||+.+++. +...+|+..|..|-+|+++|
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d 580 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFD 580 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEc
Confidence 344556666666544 45679999999999999986
No 20
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=46.95 E-value=14 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.3
Q ss_pred CceEEEEEEEEccCceEEec
Q 021559 291 KTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 291 g~L~V~G~~YDi~TG~v~~~ 310 (311)
.++.|+||+++..+|.|+.+
T Consensus 28 ~~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 28 LRLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HHCCCEEEEEECCCCeEEEE
Confidence 35779999999999999864
No 21
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.39 E-value=39 Score=26.17 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHh--hhcCchhhHhhhhH
Q 021559 66 MANQSYEEAIEALKKLLK--EKEDLKPVAAAKVE 97 (311)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~ 97 (311)
|...+||+|+.+|.++++ |.+++..--+.+..
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Leesl~ly 34 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLDDSLKAF 34 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 667789999999988876 45566554444433
No 22
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=40.62 E-value=52 Score=28.10 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=35.9
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcC
Q 021559 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (311)
Q Consensus 130 ~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~ 204 (311)
..-||.+|++..-.+-| ++|+.|.+..+..+.. ..+++-. +..||+ ||+||.+.+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc--------------cHHHHHHHHH
Confidence 34589999988766777 6788888875554432 3444443 334664 5777776643
No 23
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.35 E-value=96 Score=27.71 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHHh
Q 021559 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKR 127 (311)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~~~~p~~~le~Ll~GN~rF~~ 127 (311)
.+||..+++.-|++|=|..+|. +|-.-++.+..=+++.. +.....+-++++.+.....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~l~ 162 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEELE 162 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777776666 56666666666666653 3334556666666655443
No 24
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=34.33 E-value=24 Score=30.59 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=12.8
Q ss_pred CccEEEEeccCCCCc
Q 021559 204 KVSNIVVIGHSACGG 218 (311)
Q Consensus 204 ~V~~IVV~GHS~CGa 218 (311)
.+.+|.|+||.+||=
T Consensus 2 ~~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGK 16 (188)
T ss_dssp TEEEEEEEESTTSSH
T ss_pred CEEEEEEECCCCCCc
Confidence 357899999999993
No 25
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=33.55 E-value=2.2e+02 Score=25.71 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=45.2
Q ss_pred EEEEeecCCCCChhhhcC------CCCCceEE-EecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCccc
Q 021559 148 YMVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (311)
Q Consensus 148 ~lVItCsDSRV~Pe~ifg------~~pGD~FV-vRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~ 220 (311)
.-++||.=--...+.+|. -++||+++ +-+-||-- .++.++|-|. .+|+..|..-|-+ =|.++
T Consensus 83 sS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~-GG~~~ 151 (176)
T COG0279 83 SSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKD-GGKLA 151 (176)
T ss_pred cHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCC-Ccccc
Confidence 345677766677777773 25999877 88888853 4788899764 6788888888764 35555
Q ss_pred ccc
Q 021559 221 GLM 223 (311)
Q Consensus 221 Aa~ 223 (311)
..+
T Consensus 152 ~~~ 154 (176)
T COG0279 152 GLL 154 (176)
T ss_pred ccc
Confidence 443
No 26
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=33.25 E-value=2.4e+02 Score=26.14 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=40.5
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCCC-CceEEE---ecccccCCCCCCccchhhHHHHHHHHHhcC
Q 021559 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQP-GEAFVV---RNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (311)
Q Consensus 133 ~p~~~~~La~gQ~Pk~lVItCsDSRV----~Pe~ifg~~p-GD~FVv---RNaGN~V~~~d~~~~~~v~aSLEyAV~~L~ 204 (311)
.++.+++++++++|.=++.-|...+. +.+.++.... +-++++ ++.|| ++ +|-=.+..+|
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~N------------lG-ai~Rta~a~G 120 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGVTDPHN------------LG-ACLRSADAAG 120 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCCCCcch------------HH-HHHHHHHHcC
Confidence 45667788877777655555554332 2233343222 223333 22233 33 4555667899
Q ss_pred ccEEEEeccCCCC
Q 021559 205 VSNIVVIGHSACG 217 (311)
Q Consensus 205 V~~IVV~GHS~CG 217 (311)
++.|++.+|+.+.
T Consensus 121 ~~~vi~~~~~~~~ 133 (244)
T PRK11181 121 VHAVIVPKDRSAQ 133 (244)
T ss_pred CCEEEECCCCCCC
Confidence 9999999887544
No 27
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=32.79 E-value=5.5e+02 Score=27.27 Aligned_cols=155 Identities=17% Similarity=0.287 Sum_probs=89.0
Q ss_pred HhhhhhHHHHHHHHHHHHhhhcCchhhHhhhhHHHHHHhcCCCC-----CChHHHHH--------HHHHHHHHHHhhh--
Q 021559 65 DMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD-----TKAFDSVE--------RIKEGFIHFKREK-- 129 (311)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~l~~~~~-----~~p~~~le--------~Ll~GN~rF~~~~-- 129 (311)
+...++|--.-+.+..++.+- +|......++...++.+-..-+ ..| ++++ .|++|-+.|.+..
T Consensus 91 ~~~~q~yl~~~~~~~~~~~~~-~l~~~~~~~~~f~~~q~~da~sPsN~~tNP-~~~~~~~~t~G~sl~~G~~~~~~Dl~~ 168 (560)
T TIGR01839 91 RRYLQAYLAWQKQLQDWIGES-DLDPDDRARAQFLINLMTDAMAPSNSLSNP-LAVKELFNTGGKSLLDGVSHLLKDLVH 168 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhCCcCcccCH-HHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 455677776666677777655 5888888888877777654321 233 3333 4678888887743
Q ss_pred -----ccCChhhHHhh-hcCCCCcEEEEeec-----------CCC-------CCh----hhhcCCCCC------------
Q 021559 130 -----YEKNPALYSEL-AKGQSPKYMVFACS-----------DSR-------VCP----SHVLDFQPG------------ 169 (311)
Q Consensus 130 -----~~~~p~~~~~L-a~gQ~Pk~lVItCs-----------DSR-------V~P----e~ifg~~pG------------ 169 (311)
...+.+.|+-- .-+.+|.-+|+..- +.+ ||| .-|||+.|+
T Consensus 169 ~~g~~~~~d~~aF~vG~~~a~TPg~VV~~n~l~eLiqY~P~te~v~~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~qG~ 248 (560)
T TIGR01839 169 NGGMPSQVNMDAFEVGKNLATTEGAVVFRNEVLELIQYKPITEQQHARPLLVVPPQINKFYIFDLSPEKSFVQYCLKNQL 248 (560)
T ss_pred cCCCCCCCChhhcccCCCCCCCCCceeEECCceEEEEeCCCCCCcCCCcEEEechhhhhhheeecCCcchHHHHHHHcCC
Confidence 11233333310 01345554444332 111 111 336787665
Q ss_pred ceEEE--ecccccCCCCCCccc-hhhHHHHHHHHHhcCccEEEEeccCCCCccccc
Q 021559 170 EAFVV--RNVANIVPPYDQTKY-AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (311)
Q Consensus 170 D~FVv--RNaGN~V~~~d~~~~-~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa 222 (311)
++|+| ||.+---...+...| ..+..+|+....+-|.+.|-++|| |-||+-++
T Consensus 249 ~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~Gy-C~GGtl~a 303 (560)
T TIGR01839 249 QVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGA-CAGGLTCA 303 (560)
T ss_pred eEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEE-CcchHHHH
Confidence 67777 565433222111222 367788898888899999999999 45554443
No 28
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=31.36 E-value=18 Score=27.89 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.8
Q ss_pred EEEEEEEEccCceEE
Q 021559 294 ALKGGYYDFVNGSFE 308 (311)
Q Consensus 294 ~V~G~~YDi~TG~v~ 308 (311)
..||+.||+.||++.
T Consensus 65 p~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 65 PCHGWRFDLDTGECV 79 (97)
T ss_dssp TTTTEEEETTTSBEE
T ss_pred CCcCCEEeCCCceEe
Confidence 369999999999864
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=31.11 E-value=31 Score=29.90 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.6
Q ss_pred CccEEEEeccCCCC
Q 021559 204 KVSNIVVIGHSACG 217 (311)
Q Consensus 204 ~V~~IVV~GHS~CG 217 (311)
.+++|+++||++||
T Consensus 1 ~~r~i~ivG~~~~G 14 (194)
T cd01891 1 DIRNIAIIAHVDHG 14 (194)
T ss_pred CccEEEEEecCCCC
Confidence 36799999999999
No 30
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=30.10 E-value=67 Score=26.23 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=37.4
Q ss_pred cccccccccccccCC--CCceEEEeecCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHHhhhcCch
Q 021559 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (311)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (311)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334445577888543 32222 233458999886 3445444555432 1111 24455555544
Q ss_pred hhHhhhhHHHHHHhc
Q 021559 90 PVAAAKVEQITAQLQ 104 (311)
Q Consensus 90 ~~a~~~i~~~~~~l~ 104 (311)
-.++.++.++++-+
T Consensus 68 -~~~~~~~~i~~~~~ 81 (97)
T PRK09778 68 -PSAARLEEITRRAE 81 (97)
T ss_pred -ccHHHHHHHHHHHH
Confidence 33456666655543
No 31
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=28.89 E-value=81 Score=31.10 Aligned_cols=42 Identities=31% Similarity=0.421 Sum_probs=32.0
Q ss_pred hhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEecc
Q 021559 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (311)
Q Consensus 161 e~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GH 213 (311)
.++-++++|| .||.|.||- +++.++---+.++|++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS----------~VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANS----------GVGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCccc----------HHHHHHHHHHHHhCcceEEEeec
Confidence 4567899999 799999995 35545544568999999988754
No 32
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.33 E-value=92 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHh--hhcCchhhHhhhh
Q 021559 68 NQSYEEAIEALKKLLK--EKEDLKPVAAAKV 96 (311)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i 96 (311)
+.|||+|+.+|..+++ |.+++..-.+.+.
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~Leesl~l 35 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSLEESLDL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4589999999988776 4455554333333
No 33
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=27.99 E-value=53 Score=27.83 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHhcCccEEEEeccCCCCcccc
Q 021559 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (311)
Q Consensus 190 ~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~A 221 (311)
....+.+++-...||++.|.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45667899999999999999999976 65543
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=27.96 E-value=36 Score=32.28 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=12.1
Q ss_pred ccEEEEeccCCCCc
Q 021559 205 VSNIVVIGHSACGG 218 (311)
Q Consensus 205 V~~IVV~GHS~CGa 218 (311)
=+-|.|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 46899999999994
No 35
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.50 E-value=1e+02 Score=23.77 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHh--hhcCchh
Q 021559 69 QSYEEAIEALKKLLK--EKEDLKP 90 (311)
Q Consensus 69 ~~~~~~~~~~~~~~~--~~~~~~~ 90 (311)
.|||+|+.+|..+++ |++++..
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~L 29 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASL 29 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCH
Confidence 389999999887776 4445554
No 36
>PRK11440 putative hydrolase; Provisional
Probab=26.27 E-value=1.3e+02 Score=26.34 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=31.4
Q ss_pred cCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCccc
Q 021559 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIK 220 (311)
Q Consensus 164 fg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav~ 220 (311)
|...+||.++.++--+-... + .|+.-....|+++++|+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45678898877776554322 1 25555678999999999965554444
No 37
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=25.84 E-value=26 Score=27.11 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=12.4
Q ss_pred EEEEEEEEccCceE
Q 021559 294 ALKGGYYDFVNGSF 307 (311)
Q Consensus 294 ~V~G~~YDi~TG~v 307 (311)
..|||.||+.||+.
T Consensus 61 p~Hg~~fd~~~G~~ 74 (98)
T cd03528 61 PLHGGRFDLRTGKA 74 (98)
T ss_pred CCcCCEEECCCCcc
Confidence 47999999999976
No 38
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=25.79 E-value=39 Score=28.34 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred cEEEEeccCCCC
Q 021559 206 SNIVVIGHSACG 217 (311)
Q Consensus 206 ~~IVV~GHS~CG 217 (311)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 39
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=24.53 E-value=25 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.6
Q ss_pred EEEEEEEEccCceEE
Q 021559 294 ALKGGYYDFVNGSFE 308 (311)
Q Consensus 294 ~V~G~~YDi~TG~v~ 308 (311)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 469999999999753
No 40
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=24.40 E-value=70 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHhhhChHHHhhhcCCceEEEEE
Q 021559 274 SLSNLLTYPFVREGLVNKTLALKGG 298 (311)
Q Consensus 274 qv~~L~s~P~V~~~v~~g~L~V~G~ 298 (311)
-|+.|..+|-+-+.+.+|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 4667889999999999999999985
No 41
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=24.26 E-value=3.2e+02 Score=26.57 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred chhhHhhhhhHHHHHHHHHHHHh-hhcCchhhHhhhhHHHHHHhcCCC--C-CChHHH--H-HHHHHHHHHHHh------
Q 021559 61 NWREDMANQSYEEAIEALKKLLK-EKEDLKPVAAAKVEQITAQLQTPS--D-TKAFDS--V-ERIKEGFIHFKR------ 127 (311)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~~~~l~~~~--~-~~p~~~--l-e~Ll~GN~rF~~------ 127 (311)
+.+.+.-.++.+...+.++++|+ +...-..+..++..++.++.+... + ++..|+ + ++|..-.++|..
T Consensus 74 gY~~~~~~e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~LTeHLk~hkKD~~ 153 (302)
T PTZ00119 74 GYIGLWQYDDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNLRAHLILRCKDHP 153 (302)
T ss_pred cceecccccchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 33444444455555555666655 233334444555566666666421 1 222221 1 333333333322
Q ss_pred -----------------hhccCChhhHHhhhcCCCCcEEEEeecCCCCCh
Q 021559 128 -----------------EKYEKNPALYSELAKGQSPKYMVFACSDSRVCP 160 (311)
Q Consensus 128 -----------------~~~~~~p~~~~~La~gQ~Pk~lVItCsDSRV~P 160 (311)
--..++++.|..+.+.=.=+-+.|+-+|||=.-
T Consensus 154 SrRGLlkLV~KRRKLLkYLKrkD~erY~~lIkkLGLRkv~f~~~~~~~~~ 203 (302)
T PTZ00119 154 KKRTMSILLARRQKLMKYLYKTDFELYKHTCNLLKIKCILFAIPDSRDRS 203 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCceEEeecccccChh
Confidence 222345666766655445567888999988653
No 42
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=23.71 E-value=38 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=11.1
Q ss_pred EEEEEEccCceEE
Q 021559 296 KGGYYDFVNGSFE 308 (311)
Q Consensus 296 ~G~~YDi~TG~v~ 308 (311)
-|.-|||+||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 5889999999874
No 43
>PRK14445 acylphosphatase; Provisional
Probab=23.60 E-value=86 Score=24.72 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=16.6
Q ss_pred CceEEEEEEEEccCceEEe
Q 021559 291 KTLALKGGYYDFVNGSFEL 309 (311)
Q Consensus 291 g~L~V~G~~YDi~TG~v~~ 309 (311)
.++.|.||+.+..+|.|+.
T Consensus 28 ~~~gl~G~V~N~~dG~Vei 46 (91)
T PRK14445 28 SELNLSGWVRNLPDGTVEI 46 (91)
T ss_pred hhCCCEEEEEECCCCeEEE
Confidence 4578999999999998875
No 44
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=23.28 E-value=1.8e+02 Score=27.97 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=36.2
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCC
Q 021559 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACG 217 (311)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CG 217 (311)
.+.-+.||++|-|- |=|-+.+..+.--=-+|+=|+-++-... -+...|--|+..-|+..+||++ ..=|
T Consensus 77 ~ag~~dPKimvTTS---R~PSsrL~~FaKelkLvfPNaqr~nRG~------~~~~~lv~a~ra~~~Td~iivH-EhRG 144 (290)
T KOG2781|consen 77 WAGEEDPKIMVTTS---RDPSSRLKMFAKELKLVFPNAQRLNRGN------YVVGELVDAARANGVTDLIIVH-EHRG 144 (290)
T ss_pred hccCCCCcEEEEeC---CCchHHHHHHHHhheEeccChhhhcccc------eeHHHHHHHHHHCCCceEEEEe-ccCC
Confidence 35668999888774 4443333322221123444443332211 0223566688889988887774 3444
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=23.12 E-value=45 Score=27.54 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=10.6
Q ss_pred EEEEeccCCCCc
Q 021559 207 NIVVIGHSACGG 218 (311)
Q Consensus 207 ~IVV~GHS~CGa 218 (311)
+|+|+||.+||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 46
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=22.70 E-value=1.6e+02 Score=22.11 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHh--hhcCchhhHhh
Q 021559 70 SYEEAIEALKKLLK--EKEDLKPVAAA 94 (311)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~~~~~a~~ 94 (311)
|||+|+++|..+++ |.+++..-.+.
T Consensus 2 sfEe~l~~Le~Iv~~LE~~~l~Leesl 28 (67)
T TIGR01280 2 SFEEALSELEQIVQKLESGDLALEEAL 28 (67)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58888888887776 34455443333
No 47
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=22.56 E-value=65 Score=28.74 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=32.5
Q ss_pred ccceeecccccccccccccCCCCceEEEeecCC-CCCCCc------ccCCccc---cCCCcccCcchhhHhh
Q 021559 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPVF---AAPAPIINPNWREDMA 67 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~ 67 (311)
-|-..|+|.||.++.+.--.+..|.+.-.-.++ ..+|.. ---+|.- --+.|||+|.-++-|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788889998777663233334333222211 112322 1122211 2368999998776665
No 48
>PRK14440 acylphosphatase; Provisional
Probab=22.03 E-value=60 Score=25.66 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.8
Q ss_pred CceEEEEEEEEccCceEEec
Q 021559 291 KTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 291 g~L~V~G~~YDi~TG~v~~~ 310 (311)
.++.|.||+.+...|.|+.+
T Consensus 27 ~~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 27 IRLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HHcCCEEEEEECCCCCEEEE
Confidence 35779999999999998863
No 49
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=21.88 E-value=51 Score=29.27 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred cEEEEeccCCCCc
Q 021559 206 SNIVVIGHSACGG 218 (311)
Q Consensus 206 ~~IVV~GHS~CGa 218 (311)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4799999999993
No 50
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=21.80 E-value=58 Score=30.58 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=12.5
Q ss_pred ccEEEEeccCCCCc
Q 021559 205 VSNIVVIGHSACGG 218 (311)
Q Consensus 205 V~~IVV~GHS~CGa 218 (311)
.++|.|+||.+||=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 57999999999994
No 51
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=21.71 E-value=45 Score=28.01 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=13.3
Q ss_pred EEEEEEEEccCceEE
Q 021559 294 ALKGGYYDFVNGSFE 308 (311)
Q Consensus 294 ~V~G~~YDi~TG~v~ 308 (311)
..|||-||+.||++.
T Consensus 77 p~Hgw~Fdl~tG~~~ 91 (136)
T cd03548 77 WYHGWTYRLDDGKLV 91 (136)
T ss_pred cCCccEEeCCCccEE
Confidence 479999999999975
No 52
>PRK14441 acylphosphatase; Provisional
Probab=21.39 E-value=1.1e+02 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.2
Q ss_pred CceEEEEEEEEccCceEEec
Q 021559 291 KTLALKGGYYDFVNGSFELW 310 (311)
Q Consensus 291 g~L~V~G~~YDi~TG~v~~~ 310 (311)
..+.|.||+.+...|.|+.+
T Consensus 29 ~~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 29 RRLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hhcCcEEEEEECCCCEEEEE
Confidence 45889999999999988763
No 53
>PRK14432 acylphosphatase; Provisional
Probab=21.36 E-value=60 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.9
Q ss_pred ceEEEEEEEEccCceEEe
Q 021559 292 TLALKGGYYDFVNGSFEL 309 (311)
Q Consensus 292 ~L~V~G~~YDi~TG~v~~ 309 (311)
++.|.||+.+..+|.|+.
T Consensus 27 ~lgl~G~V~N~~dG~Vei 44 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEI 44 (93)
T ss_pred HhCCEEEEEECCCCCEEE
Confidence 477999999999998875
No 54
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.32 E-value=1.1e+02 Score=24.58 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCccEEEEeccCCCCccccc
Q 021559 191 GVGAAVEYAVLHLKVSNIVVIGHSACGGIKGL 222 (311)
Q Consensus 191 ~v~aSLEyAV~~L~V~~IVV~GHS~CGav~Aa 222 (311)
.+...|.-.+...+-..|+|.|||==|++..+
T Consensus 49 ~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l 80 (140)
T PF01764_consen 49 QILDALKELVEKYPDYSIVITGHSLGGALASL 80 (140)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHhcccCccchhhccchHHHHHHH
Confidence 34455655666667789999999987776653
No 55
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=21.19 E-value=39 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=12.5
Q ss_pred EEEEEEEEccCceE
Q 021559 294 ALKGGYYDFVNGSF 307 (311)
Q Consensus 294 ~V~G~~YDi~TG~v 307 (311)
..||+.||+.||+.
T Consensus 63 P~Hg~~Fdl~tG~~ 76 (101)
T TIGR02377 63 PKHAGCFDYRTGEA 76 (101)
T ss_pred CccCCEEECCCCcc
Confidence 47999999999986
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.04 E-value=64 Score=28.00 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.5
Q ss_pred cCccEEEEeccCCCCc
Q 021559 203 LKVSNIVVIGHSACGG 218 (311)
Q Consensus 203 L~V~~IVV~GHS~CGa 218 (311)
-++..|+|+||++||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3467999999999993
No 57
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.91 E-value=1.4e+02 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred hHhhhhhHHHHHHHHHHHHh--hhcCchhhHhhh
Q 021559 64 EDMANQSYEEAIEALKKLLK--EKEDLKPVAAAK 95 (311)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~ 95 (311)
+++.+.+||+|+++|..+++ +.+++..-.+.+
T Consensus 5 ~~~~~~sfEea~~~LEeIv~~LE~~~l~Lees~~ 38 (80)
T PRK00977 5 KKSKPLSFEEALAELEEIVTRLESGDLPLEESLA 38 (80)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 34456789999999988876 444555433333
No 58
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=20.58 E-value=3.8e+02 Score=22.52 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=57.8
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEecccccCCCCCCccchhhHHHHHHHHHhcCccEEEEeccCCCCcc
Q 021559 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (311)
Q Consensus 140 La~gQ~Pk~lVItCsDSRV~Pe~ifg~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~V~~IVV~GHS~CGav 219 (311)
+..|-.|...+|-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999888777777655444 55678899999999875 36678889977766678888888777666
Q ss_pred cccccc
Q 021559 220 KGLMSF 225 (311)
Q Consensus 220 ~Aa~~~ 225 (311)
-+.+..
T Consensus 78 Pail~a 83 (121)
T PF04019_consen 78 PAILYA 83 (121)
T ss_pred HHHHhC
Confidence 554433
No 59
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=20.54 E-value=62 Score=26.54 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.2
Q ss_pred cEEEEeccCCCCc
Q 021559 206 SNIVVIGHSACGG 218 (311)
Q Consensus 206 ~~IVV~GHS~CGa 218 (311)
+.|+|+||++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 4699999999993
No 60
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=20.26 E-value=39 Score=26.77 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=12.2
Q ss_pred EEEEEEEEccCceE
Q 021559 294 ALKGGYYDFVNGSF 307 (311)
Q Consensus 294 ~V~G~~YDi~TG~v 307 (311)
..|||.||+.||+.
T Consensus 68 p~Hg~~Fdl~tG~~ 81 (105)
T TIGR02378 68 PLHKRNFRLEDGRC 81 (105)
T ss_pred CcCCCEEEcCCccc
Confidence 46999999999975
No 61
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=20.00 E-value=34 Score=27.74 Aligned_cols=14 Identities=21% Similarity=0.365 Sum_probs=12.4
Q ss_pred EEEEEEEEccCceE
Q 021559 294 ALKGGYYDFVNGSF 307 (311)
Q Consensus 294 ~V~G~~YDi~TG~v 307 (311)
..|||.||+.||+.
T Consensus 71 P~H~~~Fdl~TG~~ 84 (108)
T PRK09511 71 PLKKQRFRLSDGLC 84 (108)
T ss_pred CCCCCEEECCCccc
Confidence 47999999999975
Done!