BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021562
MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIKMSATSEQAAAATAQKPS
KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVR
NKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSR
DEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRH
LKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSKEST
NRILMEVLKIL

High Scoring Gene Products

Symbol, full name Information P value
CRD1
COPPER RESPONSE DEFECT 1
protein from Arabidopsis thaliana 7.8e-126

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021562
        (311 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080560 - symbol:CRD1 "COPPER RESPONSE DEFECT ...  1236  7.8e-126  1


>TAIR|locus:2080560 [details] [associations]
            symbol:CRD1 "COPPER RESPONSE DEFECT 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=IEA] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0046914 "transition metal ion binding"
            evidence=IEA] [GO:0048529 "magnesium-protoporphyrin IX monomethyl
            ester (oxidative) cyclase activity" evidence=IEA;NAS;IMP]
            [GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0003677
            "DNA binding" evidence=TAS] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0006636
            "unsaturated fatty acid biosynthetic process" evidence=RCA]
            [GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009657
            "plastid organization" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0010207 "photosystem II
            assembly" evidence=RCA] [GO:0015994 "chlorophyll metabolic process"
            evidence=RCA] [GO:0019216 "regulation of lipid metabolic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
            "cysteine biosynthetic process" evidence=RCA] [GO:0031408 "oxylipin
            biosynthetic process" evidence=RCA] InterPro:IPR003251
            InterPro:IPR008434 InterPro:IPR009078 Pfam:PF02915
            UniPathway:UPA00668 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0003677 GO:GO:0046914 GO:GO:0009706 HOGENOM:HOG000233491
            GO:GO:0009535 GO:GO:0015979 EMBL:AL138655 SUPFAM:SSF47240
            GO:GO:0015995 EMBL:U38232 EMBL:AF236101 EMBL:AY170319 EMBL:U75599
            IPI:IPI00517126 PIR:T47754 RefSeq:NP_191253.1 UniGene:At.48778
            UniGene:At.70999 ProteinModelPortal:Q9M591 STRING:Q9M591
            PaxDb:Q9M591 PRIDE:Q9M591 EnsemblPlants:AT3G56940.1 GeneID:824861
            KEGG:ath:AT3G56940 TAIR:At3g56940 eggNOG:NOG10633 InParanoid:Q9M591
            KO:K04035 OMA:NPLLAEC PhylomeDB:Q9M591 ProtClustDB:PLN02508
            BioCyc:ARA:AT3G56940-MONOMER BioCyc:MetaCyc:AT3G56940-MONOMER
            Genevestigator:Q9M591 GermOnline:AT3G56940 GO:GO:0048529
            TIGRFAMs:TIGR02029 Uniprot:Q9M591
        Length = 409

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 240/297 (80%), Positives = 251/297 (84%)

Query:     1 MAAEMALVKPISKFSTIATTTKPRFSYPKATCTSLSTRFCTIXXXXXXXXXXX-XXXXXX 59
             MAAEMALVKPISKFS+      P+ S P    +    RF T+                  
Sbjct:     1 MAAEMALVKPISKFSS------PKLSNPSKFLSG--RRFSTVIRMSASSSPPPPTTATSK 52

Query:    60 XXXXNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFV 119
                  K  I+E+LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFV
Sbjct:    53 SKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFV 112

Query:   120 RNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 179
             RNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS
Sbjct:   113 RNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMS 172

Query:   180 RDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 239
             RDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   173 RDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232

Query:   240 HLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLS 296
             HLK NPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDW+AKLW+RFFCLS
Sbjct:   233 HLKENPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWQAKLWSRFFCLS 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       290   0.00089  115 3  11 22  0.44    33
                                                     33  0.43    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  215 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.40u 0.08s 23.48t   Elapsed:  00:00:01
  Total cpu time:  23.40u 0.08s 23.48t   Elapsed:  00:00:01
  Start:  Fri May 10 01:14:13 2013   End:  Fri May 10 01:14:14 2013

Back to top