Query 021563
Match_columns 311
No_of_seqs 137 out of 579
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 4.3E-89 1.5E-93 658.1 21.1 307 3-309 17-323 (390)
2 2vgn_A DOM34; translation term 100.0 9.8E-84 3.3E-88 620.7 33.7 305 3-309 19-329 (386)
3 3j15_A Protein pelota; ribosom 100.0 8.1E-85 2.8E-89 622.4 14.9 293 3-305 14-308 (357)
4 3obw_A Protein pelota homolog; 100.0 3.8E-81 1.3E-85 597.3 29.4 282 3-308 34-316 (364)
5 3oby_A Protein pelota homolog; 100.0 2.3E-81 7.7E-86 596.0 25.8 280 3-307 16-295 (352)
6 3agj_B Protein pelota homolog; 100.0 1.7E-77 5.9E-82 572.4 32.9 286 3-308 16-303 (358)
7 2qi2_A Pelota, cell division p 100.0 4.2E-76 1.4E-80 559.8 19.6 279 3-305 14-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 9.6E-52 3.3E-56 403.3 -6.0 254 27-304 64-332 (441)
9 1dt9_A ERF1, protein (eukaryot 100.0 1E-49 3.6E-54 390.0 -5.3 273 14-304 34-327 (437)
10 3agk_A Peptide chain release f 100.0 1.1E-41 3.7E-46 327.2 17.1 221 61-302 88-324 (373)
11 3ir9_A Peptide chain release f 99.8 4.6E-19 1.6E-23 151.4 8.3 74 231-306 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.7 4.8E-18 1.7E-22 138.3 3.3 68 242-309 3-70 (124)
13 1xbi_A 50S ribosomal protein L 78.6 3.8 0.00013 32.0 5.7 41 262-303 15-55 (120)
14 3j21_Z 50S ribosomal protein L 75.8 4.3 0.00015 30.4 5.1 36 266-302 5-40 (99)
15 2lbw_A H/ACA ribonucleoprotein 73.9 5.5 0.00019 31.1 5.4 31 273-303 16-46 (121)
16 3v7q_A Probable ribosomal prot 70.8 7.3 0.00025 29.3 5.3 32 272-303 14-45 (101)
17 3on1_A BH2414 protein; structu 70.5 7.5 0.00026 29.2 5.3 31 273-303 14-44 (101)
18 4a18_G RPL30; ribosome, eukary 70.3 4.7 0.00016 30.6 4.2 29 275-303 20-48 (104)
19 1w41_A 50S ribosomal protein L 70.1 5.3 0.00018 30.0 4.4 35 267-302 7-41 (101)
20 3v7e_A Ribosome-associated pro 69.3 6.3 0.00022 28.5 4.5 28 276-303 10-37 (82)
21 1vq8_F 50S ribosomal protein L 68.1 9.4 0.00032 29.6 5.6 29 275-303 27-55 (120)
22 3u5e_c L32, RP73, YL38, 60S ri 67.1 9.5 0.00032 28.9 5.3 31 273-303 18-48 (105)
23 2aif_A Ribosomal protein L7A; 64.8 12 0.00042 29.7 5.8 39 264-303 29-67 (135)
24 3iz5_f 60S ribosomal protein L 64.8 11 0.00039 29.0 5.4 32 272-303 21-52 (112)
25 3cpq_A 50S ribosomal protein L 64.6 7.7 0.00026 29.7 4.4 28 276-303 20-47 (110)
26 2fc3_A 50S ribosomal protein L 64.1 10 0.00035 29.6 5.1 28 276-303 27-54 (124)
27 1rlg_A 50S ribosomal protein L 63.8 10 0.00035 29.3 5.0 28 276-303 26-53 (119)
28 3gdz_A Arginyl-tRNA synthetase 63.7 5.1 0.00018 30.7 3.2 28 173-200 59-87 (109)
29 2ale_A SNU13, NHP2/L7AE family 62.6 13 0.00046 29.5 5.6 37 266-303 22-58 (134)
30 3o85_A Ribosomal protein L7AE; 62.0 16 0.00054 28.5 5.8 29 275-303 29-57 (122)
31 3vi6_A 60S ribosomal protein L 59.4 8.1 0.00028 30.4 3.7 29 275-303 25-53 (125)
32 2xzm_U Ribosomal protein L7AE 57.6 13 0.00044 29.3 4.6 39 264-303 12-50 (126)
33 2jnb_A NHP2-like protein 1; sp 47.1 20 0.00069 28.9 4.2 30 274-303 47-76 (144)
34 3u5c_M 40S ribosomal protein S 38.3 36 0.0012 27.5 4.4 40 263-303 27-66 (143)
35 4dey_A Voltage-dependent L-typ 34.7 59 0.002 30.0 5.8 79 185-274 139-229 (337)
36 3r8e_A Hypothetical sugar kina 32.5 82 0.0028 28.0 6.4 71 167-240 240-311 (321)
37 4htl_A Beta-glucoside kinase; 30.2 69 0.0024 28.2 5.4 67 168-241 218-284 (297)
38 3mcp_A Glucokinase; structural 27.5 83 0.0028 29.0 5.6 47 168-215 240-287 (366)
39 2gup_A ROK family protein; sug 26.3 78 0.0027 27.5 5.0 46 168-213 208-253 (292)
40 3vgl_A Glucokinase; ROK family 26.3 1.6E+02 0.0054 26.0 7.2 71 167-240 232-304 (321)
41 3htv_A D-allose kinase, alloki 25.9 91 0.0031 27.7 5.5 68 167-240 219-291 (310)
42 3jyw_G 60S ribosomal protein L 23.7 57 0.002 25.1 3.1 32 272-303 20-51 (113)
43 4db3_A Glcnac kinase, N-acetyl 23.6 1.1E+02 0.0039 27.2 5.7 69 168-240 250-318 (327)
44 4a17_S RPL26, 60S ribosomal pr 23.4 2.7E+02 0.0092 22.1 7.0 81 9-113 35-120 (135)
45 2zkr_f 60S ribosomal protein L 23.1 50 0.0017 29.4 3.0 31 273-303 131-161 (266)
46 2yhw_A Bifunctional UDP-N-acet 20.7 1.5E+02 0.005 26.4 5.8 44 168-213 265-308 (343)
47 2e2o_A Hexokinase; acetate and 20.5 1.2E+02 0.0041 26.3 5.1 45 169-213 221-265 (299)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-89 Score=658.11 Aligned_cols=307 Identities=38% Similarity=0.684 Sum_probs=270.0
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKI 82 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~ 82 (311)
+|+||++||||||||||++||.|+|+|+|||++++++|+++++|++|+|+|+||+++|||++++|||+|+|+++|+++++
T Consensus 17 ~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~~~~~~~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~ 96 (390)
T 3mca_B 17 TMCPEEPEDMWHLYNILQVGDQLKASTVRRVVKVGATGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKM 96 (390)
T ss_dssp BC---CTHHHHHHHHHCCTTCEEBCCCCCC--------------------EECCCEEECTTSSCEEEC-CBCSCCC---C
T ss_pred EEEeCCHHHHHHHHHhcCCCCEEEEEEEEEEEccCCCCCCceEEEEEEEEEEEEEEEecCCCCEEEEEEEEecCCccccc
Confidence 68999999999999999999999999999999988889889999999999999999999999999999999999999999
Q ss_pred ccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCcc
Q 021563 83 GAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIA 162 (311)
Q Consensus 83 G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~s 162 (311)
|+|||++|+||+||+++|++||+|++++|++|++++.++++++|+||+|+|+||+++++++.+++++++++|+||++|.+
T Consensus 97 G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~ 176 (390)
T 3mca_B 97 GSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSS 176 (390)
T ss_dssp CSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEEEETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCH
T ss_pred cceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEEEECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCch
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999988655
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHHH
Q 021563 163 GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREV 242 (311)
Q Consensus 163 ~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~Ev 242 (311)
++++++++||++|++++.+++++.++++||||||||+|++|++||.+++.+..++.|+.+++||+++|+|+||++|++|+
T Consensus 177 ~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Ev 256 (390)
T 3mca_B 177 AYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEI 256 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHHHHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHHHHHHhhccchhhhhhcCeEEEEEcCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999999888888888889999999999999999999
Q ss_pred hcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCCC
Q 021563 243 LDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 309 (311)
Q Consensus 243 l~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~ 309 (311)
|++|+++++|+++++++|.++|++||++|++|+++||||+++|.+|+++|||+||||+|++||++|+
T Consensus 257 l~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~ 323 (390)
T 3mca_B 257 LKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDI 323 (390)
T ss_dssp SSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=9.8e-84 Score=620.67 Aligned_cols=305 Identities=26% Similarity=0.454 Sum_probs=275.7
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCcc---
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEH--- 79 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~--- 79 (311)
+|+||++||||||||||++||.|+|+|+|||++ +++|+ +++|++++|+|+||+++|||++++|||+|+|+++|++
T Consensus 19 ~l~pE~~dDlw~lynli~~gD~v~~~T~Rkv~~-~~~g~-~~~r~~~~L~i~Ve~~~f~~~~~~lri~G~i~~~~~~~~~ 96 (386)
T 2vgn_A 19 TLLPEDKEDLFTVYQIVDKDDELIFKKKFTSKL-DEAGK-KKSTDLVKLKIKVISEDFDMKDEYLKYKGVTVTDESGASN 96 (386)
T ss_dssp EEECCSHHHHHHHHTTCCTTCEEEEEECC---------------CCEEEEEEEEEEEEETTTTEEEEEEEECCCTTSSSS
T ss_pred EEEECCHHHHHHHHHhcCCCCEEEEEEEEEEec-cCCCC-ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEccCCcccc
Confidence 689999999999999999999999999999988 67777 8999999999999999999999999999999999998
Q ss_pred --cccccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCC
Q 021563 80 --VKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKH 157 (311)
Q Consensus 80 --v~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~ 157 (311)
|++|+|||++|+||+||+++||.|++|++++|++|++++.++.+++|+||+|.|+||++++++++++++++.++|+||
T Consensus 97 ~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~iP~K~ 176 (386)
T 2vgn_A 97 VDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKK 176 (386)
T ss_dssp TTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETTEEEEEEECSSCEEEEEEEEC------
T ss_pred ccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECCcEEEEEEECCEEEEEEEEEecCCCCc
Confidence 899999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CCCcch-hhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCcc
Q 021563 158 GPAIAG-YESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYK 236 (311)
Q Consensus 158 ~~~~s~-~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~ 236 (311)
++|||+ +++++++||++|++++.+++++.++++||||||||+|++|++||.+++++..++.|+.+++||+++++|+++.
T Consensus 177 ~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~l~~~~~~~~~~~~~~~~~ki~vv~~s~~~~ 256 (386)
T 2vgn_A 177 RTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYL 256 (386)
T ss_dssp ---CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHHHHHHHHHTTCHHHHTTGGGEEEEECSCSST
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhhccchhhhccCcEEEEECCCCcc
Confidence 887544 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCCC
Q 021563 237 HSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 309 (311)
Q Consensus 237 ~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~ 309 (311)
+|++|+|++|+++++|+++++++|.++|++||+++++|++++|||+++|.+|+++|||+||||+|+++|++|+
T Consensus 257 ~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~ 329 (386)
T 2vgn_A 257 QGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNI 329 (386)
T ss_dssp HHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCH
T ss_pred ccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.1e-85 Score=622.37 Aligned_cols=293 Identities=26% Similarity=0.419 Sum_probs=281.0
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCC-CCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecC-ccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMAS-GSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILEN-EHV 80 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~-g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~-e~v 80 (311)
+|+||++||||||||||++||.|+|+|+|||++++++ ++++++|++++|+|+||+++|||++++|||+|+|+++| +++
T Consensus 14 ~l~pE~~dDlw~ly~li~~gD~v~a~T~Rkv~~~~~~~~~~~~~r~~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v 93 (357)
T 3j15_A 14 KVKAETLDDLWHLYHIIDPGDIVYAKTLRKQAQRADSLRAEKVEVIPVFLGVQAEKINFHKFANQVRVTGPIVYASREDV 93 (357)
T ss_dssp ECCCCSHHHHHHHHHHCCSSCEEECCCCCCCCCCCSSSCCCCCCCCCCCCEEECSCEEEETTTTEEEECCBEEECCCSSC
T ss_pred EEEECChHHHHHHHHhCCCCCEEEEEEEEEEEcCCCCcCCCccEEEEEEEEEEEEEEEecCCCCEEEEEEEEEecccccc
Confidence 6899999999999999999999999999999988766 47789999999999999999999999999999999999 899
Q ss_pred ccccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCC
Q 021563 81 KIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA 160 (311)
Q Consensus 81 ~~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~ 160 (311)
++|+|||++|+||+||+++||.|++|++++|++|++++.++.+++|+||+|+|+||+++++++++++++++++||||+
T Consensus 94 ~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~Vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~-- 171 (357)
T 3j15_A 94 PLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRY-- 171 (357)
T ss_dssp CCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEEEECSSCEEEEEEETTEEEEEECCCCCSCSSSS--
T ss_pred ccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCcc--
Confidence 999999999999999999999999999999999999888889999999999999999999999999999999999986
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHH
Q 021563 161 IAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 161 ~s~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
|+.+++++++||++|++++.+++++.++++||||||||+|++|++||++++++ .++||+++|+|+||.+||+
T Consensus 172 ~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l~~~~~~--------l~~kvv~v~~s~g~~~gl~ 243 (357)
T 3j15_A 172 NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFLKEKYPE--------LAKKVVIEDTSVTGRTGIY 243 (357)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHHHHHSCC--------SSCEECCCCCSCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHHHHhhHH--------hhCeEEEEeCCCCchhhHH
Confidence 56688999999999999999999999999999999999999999999986532 3568889999999999999
Q ss_pred HHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcc
Q 021563 241 EVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 305 (311)
Q Consensus 241 Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r 305 (311)
|+|++|+++++|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|+++|
T Consensus 244 Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 308 (357)
T 3j15_A 244 EVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLK 308 (357)
T ss_dssp HHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHT
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.8e-81 Score=597.26 Aligned_cols=282 Identities=21% Similarity=0.298 Sum_probs=253.4
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecC-cccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILEN-EHVK 81 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~-e~v~ 81 (311)
+|+||++||||||||||++||.|+|+|+|||+. |+ +++|++++|+|+||++||||++++|||+|+|+++| ++++
T Consensus 34 ~l~pE~~dDlw~lynlI~~GD~V~a~T~Rkv~~----~~-~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~iv~~~~~~v~ 108 (364)
T 3obw_A 34 KLHIESEDDLWLLHLILEKDDKVVAKTTRDVGL----GK-ESRRIPMTIILKVDYTEFQEFTNRLRIHGIIEDAPERFGI 108 (364)
T ss_dssp EEECCSHHHHHHHHHHCCTTCEEEEEEEEECC--------CCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEECCGGGCC
T ss_pred EEEeCCHHHHHHHHHhccCCCEEEEEEEEEEEc----CC-ceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEeccccccc
Confidence 689999999999999999999999999999974 32 57999999999999999999999999999999988 8999
Q ss_pred cccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCc
Q 021563 82 IGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAI 161 (311)
Q Consensus 82 ~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~ 161 (311)
+|+|||++|+||+||+++||.|++|++++|+++++.. +.+++|+||+|+|+||+|+++++++++++++++|||++
T Consensus 109 ~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~~~--~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~iPkK~~--- 183 (364)
T 3obw_A 109 KGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKR--SRIIIALVDFDEYLIAIPFEQGIKILSEKSLRPLNEEE--- 183 (364)
T ss_dssp TTCEEEEEECTTCEEEEECSCC--------------C--CCEEEEEEETTEEEEEEECSSCEECCCEEECGGGCSST---
T ss_pred cceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhCcC--CCEEEEEEECCcEEEEEEeCCEEEEEEEEEeeCccchh---
Confidence 9999999999999999999999999999999999854 49999999999999999999999999999999999973
Q ss_pred chhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHH
Q 021563 162 AGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 241 (311)
Q Consensus 162 s~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~E 241 (311)
+++++||++|++++.+++++.++++||||||||+|++|++||+++++ +.++.++++|+|+.+||+|
T Consensus 184 ----~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l~~~~~----------~~~i~~vd~s~g~~~gl~E 249 (364)
T 3obw_A 184 ----GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKVNAILK----------NKKIYIDSVSSATRAGLHE 249 (364)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHHHTTTC----------CSEEEEECCSCSSHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHHHHHhh----------cCeEEEEeCCCCchHhHHH
Confidence 58899999999999999999999999999999999999999988652 3578899999999999999
Q ss_pred HhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCC
Q 021563 242 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC 308 (311)
Q Consensus 242 vl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d 308 (311)
+|++|+++++|+++++++|.++|++||+++++|+++||||+++|.+|+++|||+||||+|+++|+.|
T Consensus 250 vl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d 316 (364)
T 3obw_A 250 VLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDE 316 (364)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCH
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 5
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-81 Score=596.03 Aligned_cols=280 Identities=23% Similarity=0.371 Sum_probs=242.8
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKI 82 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~ 82 (311)
+|+||++||||||||||++||.|+|+| |||+.++++++.+++|++++|+|+||+++|||++++|||+|+|+++|++
T Consensus 16 ~l~pE~~dDlw~lynlI~~GD~V~a~T-Rkv~~~~~~~~~~~er~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~--- 91 (352)
T 3oby_A 16 KLIPETLDDLWHLRFIIEKGDVVFATT-KRASQSSDKLRSDKEMVTVRLGIEVEKVEFHRFANRLRVSGKIVAGIEE--- 91 (352)
T ss_dssp EEECCSHHHHHHHHHHSCTTCEEEECC-C---------------CCCCEEEEEEEEEECSSSSCEEEEEEEEEC------
T ss_pred EEEeCChHHHHHHHHhccCCCEEEEEE-EEEeccCCCCCcceEEEEEEEEEEEEEEEecCCCCEEEEEEEEEecCCC---
Confidence 689999999999999999999999999 9999888787444599999999999999999999999999999999987
Q ss_pred ccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCcc
Q 021563 83 GAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIA 162 (311)
Q Consensus 83 G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~s 162 (311)
|+|||++|+||+||+++| +|++|++++|++|++++.++.+|+|+||+|+|+||+|+++++++++++++++|||++ |+
T Consensus 92 G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g--~~ 168 (352)
T 3oby_A 92 SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAGVLRQWGVEEIFEERMGYGKGMG--DS 168 (352)
T ss_dssp -CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEEEEETTEEEEEEEEEC----------C
T ss_pred CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEEEEeCCEEEEEEEEeccCCCccc--hh
Confidence 999999999999999999 899999999999999888889999999999999999999999999999999999874 32
Q ss_pred hhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHHH
Q 021563 163 GYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREV 242 (311)
Q Consensus 163 ~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~Ev 242 (311)
.++||++|++++.++ ++++||||||||+|++|++||.+++++ +++||+++|+|+||.+|++|+
T Consensus 169 -----r~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l~~~~~~--------l~~kvv~v~~s~gg~~gl~Ev 231 (352)
T 3oby_A 169 -----RKEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFLKERYPE--------MAKNAVVVDVSSVGSRGFIEI 231 (352)
T ss_dssp -----CCCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHHHHHCHH--------HHTTEEECCCCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHHHHHHHH--------hhCcEEEEECCCCchhhHHHH
Confidence 389999999999998 799999999999999999999986533 245788999999999999999
Q ss_pred hcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccC
Q 021563 243 LDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLV 307 (311)
Q Consensus 243 l~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~ 307 (311)
|++|+++++|+|+++++|.++|++||++|++| ++||||+++|.+|+++|||+||||+|+++|+.
T Consensus 232 l~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~ 295 (352)
T 3oby_A 232 LKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEE 295 (352)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHH
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchhcc
Confidence 99999999999999999999999999999999 99999999999999999999999999999864
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=1.7e-77 Score=572.42 Aligned_cols=286 Identities=21% Similarity=0.322 Sum_probs=272.2
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecC-cccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILEN-EHVK 81 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~-e~v~ 81 (311)
+|+||++||||||||||++||.|+|+|+|||++ |+++++|++++|+|+||+++|||+.+.|||+|+|+++| +||+
T Consensus 16 ~l~pe~~dDlw~ly~li~~gD~v~~~t~R~v~~----g~~~~~r~~~~l~i~Ve~~~f~~~~~~Lri~G~i~~~~~~~v~ 91 (358)
T 3agj_B 16 RLRPESEEDLWLLRITLRPGDVVRKRTSRDVPV----GSGRKERVVMTLRIRLDSIEFQPFTGKLRISGIVVEGPDEFGV 91 (358)
T ss_dssp EEECCSHHHHHHHHHHCCTTCEEEEEEEEEECC----SSSCCEEEEEEEEEEEEEEEECTTSCEEEEEEEEEECCGGGCC
T ss_pred EEEECCHHHHHHHHHhCCCCCEEEEEEEEEEec----CCCccEEEEEEEEEEEEEEEcCCCCCEEEEEEEEccCCCcccc
Confidence 689999999999999999999999999999976 66778999999999999999999999999999999999 7999
Q ss_pred cccEEEEEEccCCceEEEEcc-CChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCC
Q 021563 82 IGAFHTLEIELHRAFVLRKDL-WDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA 160 (311)
Q Consensus 82 ~G~~HTl~i~~~~~i~i~K~~-wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~ 160 (311)
+|+|||++|+||+||+++||+ |++|++++|++| ..++.+++|+||+|+|+||++++++++++++++.++|||| +
T Consensus 92 ~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~i~~l~~~~~~~~~~i~~~vpkK~-g- 166 (358)
T 3agj_B 92 KGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFALAVLAGHGMKILEDTSARLPGKD-D- 166 (358)
T ss_dssp TTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEEEEEEESSCEEEEEEEECCCCCTT-S-
T ss_pred cccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEEEEEEeCCEEEEEEEEEecCCCCC-c-
Confidence 999999999999999999987 999999999999 4455999999999999999999999999999999999998 3
Q ss_pred cchhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHH
Q 021563 161 IAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 161 ~s~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
+++++++++||++|++++.+++++.++++||||||||+|++|.+||.++++++ ++.++++|+|+.+|++
T Consensus 167 -~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L~~~~~~~----------~i~~v~~s~g~~~gl~ 235 (358)
T 3agj_B 167 -PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKVQRAMPSL----------KVATVDTSMGGVAGVR 235 (358)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHHHHHSTTS----------EEEEEECSCCHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHHHHHhhhc----------eEEEEEcCCCCchhHH
Confidence 44889999999999999999999889999999999999999999999997542 5688999999999999
Q ss_pred HHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCC
Q 021563 241 EVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC 308 (311)
Q Consensus 241 Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d 308 (311)
|+|++++++++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||||+|+++|++|
T Consensus 236 E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d 303 (358)
T 3agj_B 236 EALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPD 303 (358)
T ss_dssp HHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSS
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=4.2e-76 Score=559.82 Aligned_cols=279 Identities=24% Similarity=0.410 Sum_probs=242.4
Q ss_pred cccccCCchhhhHhhhcCCCCEEEEEeEEEEEecc-CCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCcccc
Q 021563 3 LMEPVDSDDLWFAYNLIAPGDSVMAVTVRKVLRQM-ASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVK 81 (311)
Q Consensus 3 ~l~~E~~dDlw~lynli~~GD~V~~~T~Rkv~~~~-~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~ 81 (311)
+|+||++||||||||||++||.|+|+|+|||++++ .+|+++++|++++|+|+||+++|||++++||++|.++.+|++ +
T Consensus 14 ~l~pE~~dDlw~lynli~~GD~v~a~T~Rkv~~~~~~~g~~~~er~~~~l~i~Ve~v~f~~~~~~Lri~G~vv~~~~~-~ 92 (347)
T 2qi2_A 14 RIRIESLDDLWYLRNILSEGDEVSAITFRRVEESADVQRSRERERIPITIRLKVEKIEFQDFDNRLRILGTVIEGPED-T 92 (347)
T ss_dssp EEECCSSHHHHHHHHHCCTTCEEEEEEC-------------CCEEEEEEEEEEECCTTCSCEEEEEEECC----------
T ss_pred EEEECCHHHHHHHHHhCCCCCEEEEEEEEEEecccccCCCCccEEEEEEEEEEEEEEEccCCCCEEecceEEEEcCCC-C
Confidence 68999999999999999999999999999998854 556778999999999999999999999999999999999988 7
Q ss_pred cccEEEEEEccCCceEEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCCCc
Q 021563 82 IGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAI 161 (311)
Q Consensus 82 ~G~~HTl~i~~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~~~ 161 (311)
+|+|||++++||+||+++| +|++|++++|++|++++.++.+++|+||+|+|+||+++++++++++++++++|||++ |
T Consensus 93 ~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~~l~~~~~~~~~~i~~~~~Kk~~--~ 169 (347)
T 2qi2_A 93 KGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYA--E 169 (347)
T ss_dssp CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEEEECSSCEEEEEEEECCHHHHC----
T ss_pred CccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEEEEECCEEEEEEEEeecCCCccc--c
Confidence 8999999999999999999 999999999999999865669999999999999999999999999999999888875 4
Q ss_pred chhhHHHHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHH
Q 021563 162 AGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 241 (311)
Q Consensus 162 s~~~~~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~E 241 (311)
|++. .++||++|++++.++ + ++||||||||+|++|.+|+.++++ +++.++++|+++.+|++|
T Consensus 170 s~f~--r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l~~~~~-----------~~i~~v~~s~~~~~gl~E 231 (347)
T 2qi2_A 170 GNYS--EASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYCAQRGV-----------NVIGSFPANRTDSGAVYE 231 (347)
T ss_dssp --CC--HHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHHHHTSC-----------CCSCCEECSSSSHHHHHH
T ss_pred chhh--HHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHHHHhhc-----------ceEEEEecCCCccccHHH
Confidence 4432 389999999999998 3 999999999999999999999863 356789999999999999
Q ss_pred HhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcc
Q 021563 242 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 305 (311)
Q Consensus 242 vl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r 305 (311)
+|++|+++++|+++++++|.++|++||+++++| ++|||+++|.+|+++|||++|||+|+++|
T Consensus 232 vl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 232 FITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFR 293 (347)
T ss_dssp HHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHT
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEeccccc
Confidence 999999999999999999999999999999998 99999999999999999999999999986
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.6e-52 Score=403.25 Aligned_cols=254 Identities=20% Similarity=0.255 Sum_probs=117.0
Q ss_pred EEeEE-EEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCcccccccEEEEEEccCCceEEEEc-cCC
Q 021563 27 AVTVR-KVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWD 104 (311)
Q Consensus 27 ~~T~R-kv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~wd 104 (311)
|.|.| |+++.+.+|+.++.+.+++|..+| |.+|.++++|.|+.++ +.|+|||++|+||+||+++|| +|+
T Consensus 64 asnIksk~~r~~v~~ai~s~~~rlkl~~~v------p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~ 134 (441)
T 3e20_C 64 ASNIKSRVNRLSVLSAITSTRERLKLYNKV------PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDN 134 (441)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHTTCSSC------TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEES
T ss_pred hhhhhhhhhccchhhHHHHHHHHHhhhccC------CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCC
Confidence 34445 555555566566677778887777 9999999999999776 468999999999999999999 799
Q ss_pred hhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCC-Ccch------hhHHHHHHHHHHHH
Q 021563 105 SLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQ 177 (311)
Q Consensus 105 ~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~f~~~v~~ 177 (311)
+|++++|++|++++. .+++|+||+++|.++++.+++++++++++.++|+||++ |||+ +++++++||++|++
T Consensus 135 ~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae 212 (441)
T 3e20_C 135 KFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAE 212 (441)
T ss_dssp SCCCTTGGGGC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEecCeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 79999999999999999999999999999999999766 5776 67889999999999
Q ss_pred HHHhccc---ccCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccCCcE-EEEEcCCCccccHHHHhcCchhHHh
Q 021563 178 AFLKHVD---FNVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENKSRI-ILVHTSSGYKHSLREVLDAPNVMNM 251 (311)
Q Consensus 178 ~l~~~~~---~~~~~~iIIaGPGf~k~~f~~--~l~~~~~~~~~~~~~~~~~k~-~~~~~s~~~~~gl~Evl~~~~v~~~ 251 (311)
++.++++ +.++++||||||||+|++|.+ |+.+++. .++ .++++|+|+++|++|+|++ ++++
T Consensus 213 ~l~~~~~~~~~~~v~~lVlaGPg~~k~~f~~~~~l~~~L~-----------~kvv~~vdvs~gg~~Gl~EvL~~--~~~~ 279 (441)
T 3e20_C 213 GAVQHFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQ-----------SRIIKTVDVSYGGDAGFNQAIEL--AADT 279 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcccCcCEEEEECCHHHHHHHHHhcccCHHHH-----------hheEEEEECCCCCccCHHHHHHH--HHHH
Confidence 9999986 578999999999999999998 6765543 233 5789999999999999999 4899
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCc
Q 021563 252 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 304 (311)
Q Consensus 252 l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~ 304 (311)
|+++++++|.++|++|++++++|+++||||+++|.+|+++|||+||||+|++.
T Consensus 280 L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 280 LSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999996
No 9
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=1e-49 Score=390.02 Aligned_cols=273 Identities=14% Similarity=0.165 Sum_probs=239.4
Q ss_pred hHhhhcCCCCEEEEEeEEEEEec--cCCCCccceEEEEEEEEEEEEEee-----cCCCCEEEEEEEEeecCcccccccEE
Q 021563 14 FAYNLIAPGDSVMAVTVRKVLRQ--MASGSRDAERVKLKLEIKVEVVDY-----DKEGSVLRIRGKNILENEHVKIGAFH 86 (311)
Q Consensus 14 ~lynli~~GD~V~~~T~Rkv~~~--~~~g~~~~~r~~~~L~i~Ve~ief-----~~~~~~Lri~G~i~~~~e~v~~G~~H 86 (311)
.+|++|.|||.|.+.|.|++... ++....+.+|..+.++|+++..+| .|.+|.+.++|.+++++. .++||
T Consensus 34 ~isl~I~pgd~v~~~t~rl~~e~~~~~~iks~~~r~~v~~ai~~~~~~l~~~~~~~~~Glvvf~g~~~~~~g---~~~~~ 110 (437)
T 1dt9_A 34 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEG---KEKKV 110 (437)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHTTCSSCCTTCEEEEEEEEECGGG---CEEEE
T ss_pred EEEEEECCCCchhHHHHHHHHHhccccccccchHHHhHHHHHHHHHHHhccCCCCCCCeEEEEeCccccCCC---ceEEE
Confidence 47899999999999999997532 112223678999999999999999 788899999999887663 36899
Q ss_pred EEEEccCCce--EEEEccCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEecceEEEEEEEEEecCCCCCC-Ccch
Q 021563 87 TLEIELHRAF--VLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG 163 (311)
Q Consensus 87 Tl~i~~~~~i--~i~K~~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~~~~~~~~~~i~~~ip~K~~~-~~s~ 163 (311)
|++++|++|| +++| +|++|++++|.+++++.. .+++|+||+|.|+||++++++++++.+++.++|+||++ |||+
T Consensus 111 tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~ 187 (437)
T 1dt9_A 111 NIDFEPFKPINTSLYL-CDNKFHTEALTALLSDDS--KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSA 187 (437)
T ss_dssp EEEECCSCCTTCCEEE-EESSCCCHHHHHHCCCCC--EEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCS
T ss_pred EEEecCCCCCceeEEE-ecChhhHHHHHHHhcCCC--CEEEEEEeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcch
Confidence 9999999999 6766 899999999999999865 89999999999999999999999999999999999887 6775
Q ss_pred ------hhHHHHHHHHHHHHHHHhcccc---cCccEEEEECCcccHHHHHH--HHHHHHHhcccccccccCCcEEEEEcC
Q 021563 164 ------YESALNKFFENVLQAFLKHVDF---NVVRCAVIASPGFTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTS 232 (311)
Q Consensus 164 ------~~~~~~~f~~~v~~~l~~~~~~---~~~~~iIIaGPGf~k~~f~~--~l~~~~~~~~~~~~~~~~~k~~~~~~s 232 (311)
+++++++||++|++++.+++.+ .++++||||||||+|++|.+ ++.+++ . ...+.++++|
T Consensus 188 ~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg~~k~~f~~~~~l~~~L--------~--~~vv~~v~~s 257 (437)
T 1dt9_A 188 LRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRL--------Q--SKVLKLVDIS 257 (437)
T ss_dssp HHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEESTTTTHHHHSCSSSCTTT--------T--TTCCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCHHHHHHHHHhhccChhh--------H--hcEEEEEecC
Confidence 3777889999999999999964 37999999999999999976 343222 1 1134678999
Q ss_pred CCccccHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCc
Q 021563 233 SGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 304 (311)
Q Consensus 233 ~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~ 304 (311)
+|+.+|++|+|++. +++|+++++++|.++|++|++++++|++++|||+++|.+|+++|||+||||+|+++
T Consensus 258 ~g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 258 YGGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp SCTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred CCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 99999999999984 99999999999999999999999999999999999999999999999999999999
No 10
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=1.1e-41 Score=327.17 Aligned_cols=221 Identities=20% Similarity=0.280 Sum_probs=192.0
Q ss_pred cCCCCEEEEEEEEeecCcccccccEEEEEEccCCceEEEEc-cCChhhHHHHHHhcCCCCCCcEEEEEEeCCeEEEEEEe
Q 021563 61 DKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKD-LWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVG 139 (311)
Q Consensus 61 ~~~~~~Lri~G~i~~~~e~v~~G~~HTl~i~~~~~i~i~K~-~wd~~~le~L~ea~~~~~~~~~~~vvid~g~a~i~ll~ 139 (311)
.|.+|..-++|... ..|+|||++++|+.||++.|+ +|++|++++|.+++++.. .+++|+||++.|.||+++
T Consensus 88 ~~~~Gl~vf~~~~~------~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~--~~~vvvvd~~~A~i~~~~ 159 (373)
T 3agk_A 88 TPPNGLVLFCGEDM------STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN--AIGIIIVERDQATIGLLK 159 (373)
T ss_dssp CCTTCEEEEEEC-----------CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSC--EEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEEecCC------CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCC--CEEEEEEeCCcEEEEEEe
Confidence 56777777788552 579999999999999999998 567899999999999865 999999999999999999
Q ss_pred cceEEEEEEEEEecCCCCCC-Ccch------hhHHHHHHHHHHHHHHHhcc---c-ccCccEEEEECCcccHHHHH--HH
Q 021563 140 RSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHV---D-FNVVRCAVIASPGFTKDQFH--RH 206 (311)
Q Consensus 140 ~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~f~~~v~~~l~~~~---~-~~~~~~iIIaGPGf~k~~f~--~~ 206 (311)
++++.++.+++.++|+||++ |+|+ +++.+++||++|++++.+++ + +.++++||||||||+|++|. +|
T Consensus 160 ~~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp~~~k~~f~~~~~ 239 (373)
T 3agk_A 160 GARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGPGLAKQEFVEGNY 239 (373)
T ss_dssp TTEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEESTTHHHHHHHSSC
T ss_pred CcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECChHHHHHhhhhhh
Confidence 99999999999999999877 5776 78889999999999999998 3 47899999999999999999 89
Q ss_pred HHHHHHhcccccccccCCcEE--EEEcCCCccccHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHH
Q 021563 207 LLLEAERRQLRPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 284 (311)
Q Consensus 207 l~~~~~~~~~~~~~~~~~k~~--~~~~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~e 284 (311)
|.+++.. +++ ++++|+++.+|++|++++ +.++|+++++++|.++|++|++++++|++++|||+++
T Consensus 240 l~~~l~~-----------~vi~~~v~~s~~~~~g~~E~l~~--~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~e 306 (373)
T 3agk_A 240 LDYRLKK-----------ILAPELVDVAYQGLQGLKEAVMK--AEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKD 306 (373)
T ss_dssp SCHHHHT-----------TBCSSCEECCCCHHHHHHHHHHH--CTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHH
T ss_pred cChHhhh-----------CceeEEEccCCCccccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHH
Confidence 9887743 455 789999999999999996 4999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccEEEEecC
Q 021563 285 VEVAHERMAVQTLLITDD 302 (311)
Q Consensus 285 V~~A~e~GAVetLLIsD~ 302 (311)
|.+|+++|||+||||+|+
T Consensus 307 V~~Al~~GaVetLlv~d~ 324 (373)
T 3agk_A 307 VEAALEMGAVKTLLIHES 324 (373)
T ss_dssp HHHHHHTTCEEEEEEETT
T ss_pred HHHHHHhCCccEEEEeCC
Confidence 999999999999999997
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.77 E-value=4.6e-19 Score=151.43 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=71.4
Q ss_pred cCCCccccHHHHhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCccc
Q 021563 231 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 306 (311)
Q Consensus 231 ~s~~~~~gl~Evl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~ 306 (311)
.||||++|++|+|++. +++|+++|+++|.++|++||++|++|++++|||+++|++|+++|||+||||+|+|+|+
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999985 9999999999999999999999999999999999999999999999999999999987
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.69 E-value=4.8e-18 Score=138.34 Aligned_cols=68 Identities=50% Similarity=0.705 Sum_probs=65.6
Q ss_pred HhcCchhHHhhhhhhHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCCcccCCC
Q 021563 242 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 309 (311)
Q Consensus 242 vl~~~~v~~~l~d~k~~~e~~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l~r~~d~ 309 (311)
+|++|+++++|+++++++|.++|++||+++++|++++|||+++|.+|+++|||+||||+|+++|++|+
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~ 70 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDV 70 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999998764
No 13
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=78.64 E-value=3.8 Score=32.02 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 262 QALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 262 ~~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.+.+++++.+..- +++..|.++|.+|++.|-+.-++|+.+.
T Consensus 15 ~l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 15 EIQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp HHHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 3556777777776 8999999999999999999999999765
No 14
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=75.77 E-value=4.3 Score=30.44 Aligned_cols=36 Identities=3% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecC
Q 021563 266 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 302 (311)
Q Consensus 266 ~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~ 302 (311)
..+....+ .++++.|.++|.+|++.|-+.-++++.+
T Consensus 5 ~~L~la~k-agk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 5 FELRKAME-TGKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHH-SSCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHH-hCCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 33444444 4899999999999999999999999987
No 15
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=73.94 E-value=5.5 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred cCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 273 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 273 ~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
...++...|.++|.+|++.|-+.-++|+.+.
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~ 46 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDI 46 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTC
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCC
Confidence 3558999999999999999999999998764
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=70.77 E-value=7.3 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.0
Q ss_pred hcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 272 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 272 ~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+...+++..|.++|.+|++.|-+.-++++.+.
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 33448999999999999999999999998764
No 17
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=70.47 E-value=7.5 Score=29.19 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 273 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 273 ~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
...++++.|.++|.+|++.|-+.-++++.+.
T Consensus 14 ~kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 3448999999999999999999999998764
No 18
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=70.34 E-value=4.7 Score=30.56 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 275 PTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 275 ~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.++++.|.++|.+|++.|-+.-++++.+.
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998764
No 19
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=70.06 E-value=5.3 Score=30.02 Aligned_cols=35 Identities=3% Similarity=0.085 Sum_probs=28.8
Q ss_pred HHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecC
Q 021563 267 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDD 302 (311)
Q Consensus 267 f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~ 302 (311)
++....+ .++...|.++|.+|++.|-+.-++++.+
T Consensus 7 ~L~la~k-agkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 7 ELRKAQD-TGKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHH-HSEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHH-cCCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 3333333 3899999999999999999999999877
No 20
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=69.25 E-value=6.3 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=26.2
Q ss_pred CcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 276 TRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 276 ~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
++...|.++|.+|++.|-++-++|+.+.
T Consensus 10 gk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp SEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred CCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 7999999999999999999999998764
No 21
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=68.12 E-value=9.4 Score=29.61 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.6
Q ss_pred CCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 275 PTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 275 ~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.+++..|.++|.+|++.|-+.-++++.+.
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 37899999999999999999999999765
No 22
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=67.12 E-value=9.5 Score=28.91 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=27.9
Q ss_pred cCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 273 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 273 ~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
...++++.|.++|.+|++.|-+.-+++..+.
T Consensus 18 ~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 18 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 4458999999999999999999999998875
No 23
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=64.82 E-value=12 Score=29.70 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 264 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 264 le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+..++....+. ++.+.|.++|.+|++.|-+.-++++.+.
T Consensus 29 i~~~L~lA~ka-gklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 29 IINLVQQACNY-KQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHHHHHHHHHc-CCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 33455554444 8999999999999999999999998764
No 24
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=64.76 E-value=11 Score=28.99 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=28.1
Q ss_pred hcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 272 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 272 ~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+...++++.|.++|.+|++.|-+.-++|+.+.
T Consensus 21 a~kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 21 VMKSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HHTTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 33458999999999999999999999998775
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=64.61 E-value=7.7 Score=29.67 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=26.4
Q ss_pred CcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 276 TRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 276 ~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 8999999999999999999999998875
No 26
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=64.12 E-value=10 Score=29.62 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.2
Q ss_pred CcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 276 TRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 276 ~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
++...|.++|.+|++.|-+.-++++.+.
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 7999999999999999999999999765
No 27
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=63.84 E-value=10 Score=29.33 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred CcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 276 TRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 276 ~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
++...|.++|.+|++.|-+.-++++.+.
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 7999999999999999999999999765
No 28
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=63.73 E-value=5.1 Score=30.70 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=20.9
Q ss_pred HHHHHHHHhcccc-cCccEEEEECCcccH
Q 021563 173 ENVLQAFLKHVDF-NVVRCAVIASPGFTK 200 (311)
Q Consensus 173 ~~v~~~l~~~~~~-~~~~~iIIaGPGf~k 200 (311)
++|++.+...+.. .-+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 4788888776653 337889999999864
No 29
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=62.57 E-value=13 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 266 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 266 ~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+++....+ .++...|.++|.+|++.|-++-++|+.+.
T Consensus 22 ~~L~lA~k-~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 22 DVVQQAAN-LRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HHHHHHHH-TTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHHHHHHH-cCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 34444443 47899999999999999999999999765
No 30
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=62.03 E-value=16 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=26.8
Q ss_pred CCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 275 PTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 275 ~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.+++..|.++|.+|++.|-+.-++|+.+.
T Consensus 29 agklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 29 LQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp TTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred hCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998775
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=59.35 E-value=8.1 Score=30.45 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 275 PTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 275 ~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.++++.|.++|.+|++.|-+.-++|+.+.
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998764
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=57.62 E-value=13 Score=29.29 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 264 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 264 le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+.+++.... ..++...|.++|.+|++.|-+.-++|..+.
T Consensus 12 l~~~L~~A~-~~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 12 LAKVIKSSN-CQDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp HHHHHTTTT-SSSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred HHHHHHHHH-HcCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 344444333 347899999999999999999999998764
No 33
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=47.11 E-value=20 Score=28.91 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=26.9
Q ss_pred CCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 274 DPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 274 ~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
..++.+.|.++|.+|++.|-++-++|+.+.
T Consensus 47 kagkl~~G~kev~KaI~~gkakLVIIA~D~ 76 (144)
T 2jnb_A 47 NYKQLRKGANEATKTLNRGISEFIVMAADA 76 (144)
T ss_dssp HTTCCCBCHHHHHHHHHHTCEEEEEEETTC
T ss_pred HcCCccccHHHHHHHHHhCCCeEEEEeCCC
Confidence 347899999999999999999999998764
No 34
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=38.29 E-value=36 Score=27.46 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 263 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 263 ~le~f~~~l~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+|.+.++..... +...-|..++.+|++.|-+.-+++.++-
T Consensus 27 aL~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~ 66 (143)
T 3u5c_M 27 ALKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSV 66 (143)
T ss_dssp HHHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCC
T ss_pred HHHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCC
Confidence 455555555544 6899999999999999999999988764
No 35
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=34.70 E-value=59 Score=29.96 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=40.3
Q ss_pred ccCccEEEEECCcc--------cHHHHHHHHHHHHHhcccccccccCCcEEEE----EcCCCccccHHHHhcCchhHHhh
Q 021563 185 FNVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMI 252 (311)
Q Consensus 185 ~~~~~~iIIaGPGf--------~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~----~~s~~~~~gl~Evl~~~~v~~~l 252 (311)
-..++.|||.||-- +++.+.+||..+... +|.+. +.+.+.+..++...++..+.+-+
T Consensus 139 vp~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~-----------~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~ 207 (337)
T 4dey_A 139 VPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG-----------RISITRVTADISLAKRSVLNNPSKHAIIERSN 207 (337)
T ss_dssp ECSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTT-----------SEEEEEECSCGGGC------------------
T ss_pred cCCCCceEEECCccccchhHHHHHHHHHHhhHHhcCC-----------ccceEeecchhhhcchhhhhcccchhhhcccc
Confidence 35678899999986 356677777777643 43222 34555566556666666666667
Q ss_pred hhhhHHHHHHHHHHHHHHHhcC
Q 021563 253 KDTKAAQEVQALKDFFNMLTND 274 (311)
Q Consensus 253 ~d~k~~~e~~~le~f~~~l~~~ 274 (311)
+...+..-..-+++.++...++
T Consensus 208 ~~~~~~ev~seVe~i~~v~~~G 229 (337)
T 4dey_A 208 TRSSLAEVQSEIERIFELARTL 229 (337)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTC
T ss_pred cccchHHHHhHHHHHHHHHhCC
Confidence 7777766656788888877654
No 36
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=32.48 E-value=82 Score=27.98 Aligned_cols=71 Identities=7% Similarity=-0.050 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHH
Q 021563 167 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 167 ~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k-~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
.+++|.+.++..+....+..++..|||+|.-... +.|.+.+.+.+.+...... ..++.+..+..+..+++.
T Consensus 240 ~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~---~~~~~i~~s~l~~~a~~~ 311 (321)
T 3r8e_A 240 VWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYY---TDDMYIGKATLENDAGLL 311 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHH---HTTCEEEECSSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhccccc---CCCCEEEEcCCCCcHHHH
Confidence 3455666666666666666788999999987644 5566777666654322111 122344555556555543
No 37
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=30.25 E-value=69 Score=28.18 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHHH
Q 021563 168 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 241 (311)
Q Consensus 168 ~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~E 241 (311)
+++|.+.++..+...++..++..|||+|.-...+.|.+.+.+.+..... ....+..+..+..+++.=
T Consensus 218 ~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~-------~~~~i~~s~lg~~a~~~G 284 (297)
T 4htl_A 218 ITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGL-------RDTIIETATHKNQAGLLG 284 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTCC-------TTCEEEECSCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhcc-------CCCeEEECCcCChHHHHh
Confidence 4445555555555555666889999999655445666666666543211 223455666666666543
No 38
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=27.50 E-value=83 Score=29.02 Aligned_cols=47 Identities=15% Similarity=-0.002 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCccc-HHHHHHHHHHHHHhcc
Q 021563 168 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQ 215 (311)
Q Consensus 168 ~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~-k~~f~~~l~~~~~~~~ 215 (311)
+++|.+.++..+....+..++ .|||+|.-.- .+.|.+.+.+.+.+..
T Consensus 240 l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~ 287 (366)
T 3mcp_A 240 FEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQT 287 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhc
Confidence 455555555555666666678 9999987654 3566677777766543
No 39
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=26.34 E-value=78 Score=27.49 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 021563 168 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 213 (311)
Q Consensus 168 ~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~ 213 (311)
++++.+.++..+....+..++..|||+|.-...+.|.+.+.+.+.+
T Consensus 208 ~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~ 253 (292)
T 2gup_A 208 IERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVED 253 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHH
Confidence 3455555555555555556788999999875445666666555543
No 40
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=26.33 E-value=1.6e+02 Score=26.04 Aligned_cols=71 Identities=6% Similarity=-0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCcccH-HHHHHHHHHHHHhccc-ccccccCCcEEEEEcCCCccccHH
Q 021563 167 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 167 ~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k-~~f~~~l~~~~~~~~~-~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
.+++|.+.++..+....+..++..|||+|.-... +.|.+.+.+.+.+... ... ...+.+..+..+..+++.
T Consensus 232 ~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 232 SFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 3456666666666666666678999999965443 3445556555543221 111 123345555556666554
No 41
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=25.94 E-value=91 Score=27.65 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcccccCccEEEEECCc-----ccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHH
Q 021563 167 ALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 167 ~~~~f~~~v~~~l~~~~~~~~~~~iIIaGPG-----f~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
...+++++.+..+...++..++..|||+|.- +..+.+.+.+.+... ... ...++.+..++.+..+|+.
T Consensus 219 ~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~----~~~--~~~~~~i~~s~lg~~ag~~ 291 (310)
T 3htv_A 219 FVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYLR----RPL--PHQVVRFIAASSSDFNGAQ 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTSC----TTT--TTTTCEEEECCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHhh----ccc--ccCCcEEEEcCCCCcHHHH
Confidence 4556777777777777777789999999953 334445544443321 111 1123445666667666543
No 42
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=23.71 E-value=57 Score=25.06 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.5
Q ss_pred hcCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 272 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 272 ~~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
.+.|.....|.++|.+|++.|-++-++|..+.
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~ 51 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDV 51 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCC
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCC
Confidence 46777889999999999999999999998764
No 43
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=23.59 E-value=1.1e+02 Score=27.19 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHhcccccccccCCcEEEEEcCCCccccHH
Q 021563 168 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 240 (311)
Q Consensus 168 ~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~~~~~~~~~~~~k~~~~~~s~~~~~gl~ 240 (311)
+++|.+.++..+....+..++..|||+|.=...+.|.+.+.+.+.+... ....+..+..+..+..+++.
T Consensus 250 ~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~----~~~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 250 VERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLL----SVAKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSC----TTCCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHhc----cccCCCEEEECCCCCcHHHH
Confidence 4455555555555555666789999999544444566555555543221 11123345556666666554
No 44
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=23.39 E-value=2.7e+02 Score=22.06 Aligned_cols=81 Identities=26% Similarity=0.268 Sum_probs=48.8
Q ss_pred CchhhhHhhh----cCCCCEEEEEeEEEEEeccCCCCccceEEEEEEEEEEEEEeecCCCCEEEEEEEEeecCccccccc
Q 021563 9 SDDLWFAYNL----IAPGDSVMAVTVRKVLRQMASGSRDAERVKLKLEIKVEVVDYDKEGSVLRIRGKNILENEHVKIGA 84 (311)
Q Consensus 9 ~dDlw~lynl----i~~GD~V~~~T~Rkv~~~~~~g~~~~~r~~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~e~v~~G~ 84 (311)
..|||.=|++ |..||.|.-.+= .+.| ..+ +|..+ .+..+++.|.|++..-+ -|.
T Consensus 35 SkeLr~ky~vRs~~IkkgD~V~Vi~G------kdKG-k~G---------kV~~V--~~kk~~V~VEgVn~~K~----~G~ 92 (135)
T 4a17_S 35 SKDLRSKYNVRSMPVRKDDEVLIVRG------KFKG-NKG---------KVTQV--YRKKWAIHVEKISKNKL----NGA 92 (135)
T ss_dssp CHHHHHHHTCSEEECCTTCEEEECSS------TTTT-CEE---------EEEEE--ETTTTEEEETTCCEEET----TTE
T ss_pred CHHHHHHhCCCcccccCCCEEEEeec------CCCC-cee---------eEEEE--EcCCCEEEEeCeEEEcC----CCC
Confidence 4689999995 999999966542 1233 212 23333 45567888888776532 142
Q ss_pred EEEEEEccC-CceEEEEccCChhhHHHHHH
Q 021563 85 FHTLEIELH-RAFVLRKDLWDSLALDTLHQ 113 (311)
Q Consensus 85 ~HTl~i~~~-~~i~i~K~~wd~~~le~L~e 113 (311)
+.+.-.+ ..+.|++..+|..-.+.|+.
T Consensus 93 --~~e~pIh~SNV~i~~~k~dk~R~~~ler 120 (135)
T 4a17_S 93 --PYQIPLSASQLVLTKLKLDKSRQSLLTR 120 (135)
T ss_dssp --EECCCBCGGGEEEEECCCCHHHHHHHHH
T ss_pred --EEEcccchHHEEEEcccCCcHHHHHhhh
Confidence 2222222 56888888888755555553
No 45
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.12 E-value=50 Score=29.41 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=28.1
Q ss_pred cCCCcEEEcHHHHHHHHhcCCccEEEEecCC
Q 021563 273 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 303 (311)
Q Consensus 273 ~~~~~~~YG~~eV~~A~e~GAVetLLIsD~l 303 (311)
+.++.+..|.++|.+|++.|-+.-++|+.+.
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Da 161 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDV 161 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCC
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCC
Confidence 4578899999999999999999999999875
No 46
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=20.65 E-value=1.5e+02 Score=26.44 Aligned_cols=44 Identities=2% Similarity=-0.131 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 021563 168 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 213 (311)
Q Consensus 168 ~~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~ 213 (311)
+++|.+.++..+....+..++..|||+|.-. +.|.+.+.+.+.+
T Consensus 265 l~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~ 308 (343)
T 2yhw_A 265 LRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQ 308 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHH
Confidence 4455556666666655666788999999753 5677777776654
No 47
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=20.48 E-value=1.2e+02 Score=26.31 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcccccCccEEEEECCcccHHHHHHHHHHHHHh
Q 021563 169 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 213 (311)
Q Consensus 169 ~~f~~~v~~~l~~~~~~~~~~~iIIaGPGf~k~~f~~~l~~~~~~ 213 (311)
+++.+.++..+....+..++..|||+|.-+..+.|.+.+.+.+.+
T Consensus 221 ~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~~ 265 (299)
T 2e2o_A 221 KQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLEK 265 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCCC
Confidence 344444444555555555788999999765556666767666543
Done!